Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 88 of 218
Found at i:25498070 original size:105 final size:105
Alignment explanation
Indices: 25497881--25498086 Score: 245
Period size: 105 Copynumber: 2.0 Consensus size: 105
25497871 CTTAATATTT
* * * * *
25497881 TCACGTATAATATATTGATTGATGCACACTGCAAGGATGGAAAGATTTTTGAAGCACTAGATACC
1 TCACATATAATATATTGATTGATGCACACTGCAAGGAAGGAAAGATTTCTAAAGCACAAGATACC
*
25497946 GTTGATACAATGAAGAAGCA-AGGCATTGAGCCTAATTTAG
66 GTTGACACAATGAAGAAGCATA-GCATTGAGCCTAATTTAG
* * * * * ** **
25497986 TCACATATAATATATTGGTTGATGCGCATTGCAAGGAAGGGAAGGTTTCTAAAGCTGAAGATATT
1 TCACATATAATATATTGATTGATGCACACTGCAAGGAAGGAAAGATTTCTAAAGCACAAGATACC
25498051 GTTGACACAATGATA-AAGCATAGCATTGAGCCTAAT
66 GTTGACACAATGA-AGAAGCATAGCATTGAGCCTAAT
25498087 GTTGTTACCT
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
105 82 0.98
106 2 0.02
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (105 bp):
TCACATATAATATATTGATTGATGCACACTGCAAGGAAGGAAAGATTTCTAAAGCACAAGATACC
GTTGACACAATGAAGAAGCATAGCATTGAGCCTAATTTAG
Found at i:25504734 original size:98 final size:99
Alignment explanation
Indices: 25504627--25504868 Score: 317
Period size: 102 Copynumber: 2.4 Consensus size: 99
25504617 AACAGATACC
* *
25504627 GTTGACACAATGAAAAAGCAAGGCATTGAGCCTGATGTTGTT-ATATATTGGTTGATGCGTATTG
1 GTTGACACAATGATAAAGCAAGGCATTGAGCCTGATGTTGTTAATATATTGGTTGATGCGCATTG
* * *
25504691 TAAGGAAGGAATGGTTTCTGAAGCTAAAGATGTT
66 CAAGGAAGGAATGGTTTCTGAAACTAAAGATATT
* * *
25504725 GTTGGCACAATGATAAAGCAAGGCATTGAGCCTGATGTTACATATAATATATTGGTTGTTGCGCA
1 GTTGACACAATGATAAAGCAAGGCATTGAGCCTGATGTT--GT-TAATATATTGGTTGATGCGCA
* *
25504790 TTGCAGGGAAGGAATGGTTTCTGAAACTGAAGATATT
63 TTGCAAGGAAGGAATGGTTTCTGAAACTAAAGATATT
* * *
25504827 GTTGACGCAATGATAAAGCATA-ACATTGAGCCTAATGTTGTT
1 GTTGACACAATGATAAAGCA-AGGCATTGAGCCTGATGTTGTT
25504869 GCCTATAGTG
Statistics
Matches: 124, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
98 37 0.30
99 1 0.01
100 2 0.02
101 1 0.01
102 82 0.66
103 1 0.01
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (99 bp):
GTTGACACAATGATAAAGCAAGGCATTGAGCCTGATGTTGTTAATATATTGGTTGATGCGCATTG
CAAGGAAGGAATGGTTTCTGAAACTAAAGATATT
Found at i:25509033 original size:19 final size:18
Alignment explanation
Indices: 25509005--25509058 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
25508995 ATTCTATATA
*
25509005 AAAATTATTTAAAAA-AG
1 AAAATCATTTAAAAATAG
25509022 TCAAAATCATTTTAAAAATAG
1 --AAAATCA-TTTAAAAATAG
*
25509043 AAAATCATATAAAAAT
1 AAAATCATTTAAAAAT
25509059 TCTATAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
18 8 0.26
19 13 0.42
20 8 0.26
21 2 0.06
ACGTcount: A:0.61, C:0.06, G:0.04, T:0.30
Consensus pattern (18 bp):
AAAATCATTTAAAAATAG
Found at i:25510933 original size:27 final size:27
Alignment explanation
Indices: 25510879--25510933 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
25510869 TTAAAGATAC
* *
25510879 ACAAAATAAAAAAAATGAAAATTCAAA
1 ACAAAATAAAAAAAATAAAAATACAAA
* * *
25510906 ACAATATAAGAAAAATAAAAATAGAAA
1 ACAAAATAAAAAAAATAAAAATACAAA
25510933 A
1 A
25510934 AAATTCAGAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.75, C:0.05, G:0.05, T:0.15
Consensus pattern (27 bp):
ACAAAATAAAAAAAATAAAAATACAAA
Found at i:25518559 original size:221 final size:220
Alignment explanation
Indices: 25518102--25518763 Score: 1184
Period size: 221 Copynumber: 3.0 Consensus size: 220
25518092 AGATGCAATA
* * *
25518102 ATAATTTTAGCAATTGGAGATAAAATTATTTGCAAAGAAAAGATGAAAAAGTAAAGGAGAAAGAA
1 ATAATTTTAGCAGTTGGAGAGAAAATTATTTGCAAAGAAAAGATGAAAAAGAAAAGGAGAAAGAA
*
25518167 ATAGGGAAAAAGAAAGCAAAATTTTAGTTTAATTGGAAAGAAAGCTATAGTTCTTTTGTGATCAG
66 ATAGGGAAAAAGAAAGCAAAATTTTAGTTTAATTGAAAAGAAAGCTATAGTTCTTTTGTGATCAG
*
25518232 GAAAATAGATTAAATACCTAGAC-TTTCTAAATTTGAGGGGTCTGGATGAAAAATTACCCTTTTT
131 GAAAAGAGATTAAATACCTAGACTTTTCTAAATTTGAGGGGTCTGGATGAAAAATTACCCTTTTT
* *
25518296 TCTAAAAATAAAAGGAAAATGGAGG
196 GCTGAAAATAAAAGGAAAATGGAGG
25518321 ATAATTTTAGCAGTTGGAGAGAAAATTATTTGCAAAGAAAAGATGAAAAAGAAAAGGAGAAAGAA
1 ATAATTTTAGCAGTTGGAGAGAAAATTATTTGCAAAGAAAAGATGAAAAAGAAAAGGAGAAAGAA
25518386 ATAGGGAAAAAGAAAGCAAAATTTTAGTTTAATTAGAAAAGAAAGCTATAGTTCTTTTGTGATCA
66 ATAGGGAAAAAGAAAGCAAAATTTTAGTTTAATT-GAAAAGAAAGCTATAGTTCTTTTGTGATCA
*
25518451 GGAAAAGAGATTAAATACCTAGACTTTTCTAAATTTGAGGGGTTTGGATGAAAAATTACCCTTTT
130 GGAAAAGAGATTAAATACCTAGACTTTTCTAAATTTGAGGGGTCTGGATGAAAAATTACCCTTTT
25518516 TGCTGAAAATAAAAGGAAAATGGAGG
195 TGCTGAAAATAAAAGGAAAATGGAGG
25518542 ATAATTTTAGCAGTTGGAGAGAAAATTATTTGCAAAGAAAAGATGAAAAAGAAAAGGAGAAAGAA
1 ATAATTTTAGCAGTTGGAGAGAAAATTATTTGCAAAGAAAAGATGAAAAAGAAAAGGAGAAAGAA
*
25518607 ATAAGGAAAAAGAAAGCAAAATTTTAGTTTAATTGGAAAAGAAAGCTATAGTTCTTTTGTGATCA
66 ATAGGGAAAAAGAAAGCAAAATTTTAGTTTAATT-GAAAAGAAAGCTATAGTTCTTTTGTGATCA
* * *
25518672 GAAAAAGAGATTAAATACCTAGACTTTTCTAAATTTGAGGGGTCTAGATGAAACATTA-CCTTTT
130 GGAAAAGAGATTAAATACCTAGACTTTTCTAAATTTGAGGGGTCTGGATGAAAAATTACCCTTTT
25518736 TGCTGAAAATAAAAGGAAAATGGAGG
195 TGCTGAAAATAAAAGGAAAATGGAGG
25518762 AT
1 AT
25518764 TTTAGCATGA
Statistics
Matches: 427, Mismatches: 14, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
219 96 0.22
220 86 0.20
221 245 0.57
ACGTcount: A:0.45, C:0.07, G:0.21, T:0.27
Consensus pattern (220 bp):
ATAATTTTAGCAGTTGGAGAGAAAATTATTTGCAAAGAAAAGATGAAAAAGAAAAGGAGAAAGAA
ATAGGGAAAAAGAAAGCAAAATTTTAGTTTAATTGAAAAGAAAGCTATAGTTCTTTTGTGATCAG
GAAAAGAGATTAAATACCTAGACTTTTCTAAATTTGAGGGGTCTGGATGAAAAATTACCCTTTTT
GCTGAAAATAAAAGGAAAATGGAGG
Found at i:25519188 original size:19 final size:22
Alignment explanation
Indices: 25519164--25519212 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
25519154 CTGCATTTTT
25519164 GAAAATAAC-T-T-GGTCAACG
1 GAAAATAACTTATAGGTCAACG
* *
25519183 GAAAATGACTTATAGGTTAACG
1 GAAAATAACTTATAGGTCAACG
25519205 GAAAATAA
1 GAAAATAA
25519213 GTCATTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 8 0.33
20 1 0.04
21 1 0.04
22 14 0.58
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.22
Consensus pattern (22 bp):
GAAAATAACTTATAGGTCAACG
Found at i:25519398 original size:15 final size:13
Alignment explanation
Indices: 25519363--25519387 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25519353 TAAAATTTGA
25519363 AAATATTAAAATC
1 AAATATTAAAATC
25519376 AAATATTAAAAT
1 AAATATTAAAAT
25519388 TTCCAATATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
AAATATTAAAATC
Found at i:25525718 original size:13 final size:13
Alignment explanation
Indices: 25525700--25525724 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25525690 GCAAAACCTA
25525700 CAACTATCATTTG
1 CAACTATCATTTG
25525713 CAACTATCATTT
1 CAACTATCATTT
25525725 TTCCAGCAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.04, T:0.40
Consensus pattern (13 bp):
CAACTATCATTTG
Found at i:25529847 original size:25 final size:25
Alignment explanation
Indices: 25529799--25529888 Score: 85
Period size: 25 Copynumber: 3.6 Consensus size: 25
25529789 ACATGTATGT
*
25529799 TCATACGAGCT--ATAAACGGTAAGC
1 TCATACGAGCTGAAT-AACAGTAAGC
* *
25529823 TCCTTCGAGCTGAATAACAGTAAGC
1 TCATACGAGCTGAATAACAGTAAGC
* * *
25529848 TCATACGAGCTGAGTATCGGTAAGC
1 TCATACGAGCTGAATAACAGTAAGC
*
25529873 TCATAAGAGCTAGAAT
1 TCATACGAGCT-GAAT
25529889 TGGTAACCTT
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
24 9 0.17
25 39 0.74
26 5 0.09
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.23
Consensus pattern (25 bp):
TCATACGAGCTGAATAACAGTAAGC
Found at i:25538805 original size:54 final size:54
Alignment explanation
Indices: 25538721--25538959 Score: 313
Period size: 54 Copynumber: 4.4 Consensus size: 54
25538711 ATCATAACCT
* * *
25538721 AAATACCCCCATAGGATAAAATGATCGAAATACCCTCATAGGGTAAAATTATCG
1 AAATACCCCCATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGACCG
* * * ** *
25538775 AAATACCCCTATAGGGTAAAATGATTGAAATATCCTCATAGAATAGAATGACCG
1 AAATACCCCCATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGACCG
* * *
25538829 AAATACCCCTATAGGGTAAAATGATCGAAATACCCT-ACAGGGTAAAATGACCA
1 AAATACCCCCATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGACCG
* *
25538882 AAATACCCCCATAGGGTAAAATGA-CTGAAATA-CCTCTATAGGTTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGATC-GAAATACCCTC-ATAGGGTAAAATGACCG
25538936 AAATACCCCCATAGGGTAAAATGA
1 AAATACCCCCATAGGGTAAAATGA
25538960 CTGTTATACC
Statistics
Matches: 161, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
52 4 0.02
53 41 0.25
54 116 0.72
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.22
Consensus pattern (54 bp):
AAATACCCCCATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGACCG
Found at i:25538970 original size:27 final size:27
Alignment explanation
Indices: 25538721--25538962 Score: 258
Period size: 27 Copynumber: 9.0 Consensus size: 27
25538711 ATCATAACCT
*
25538721 AAATACCCCCATAGGATAAAATGA-TCG
1 AAATACCCCCATAGGGTAAAATGACT-G
* *
25538748 AAATACCCTCATAGGGTAAAATTA-TCG
1 AAATACCCCCATAGGGTAAAATGACT-G
* *
25538775 AAATACCCCTATAGGGTAAAATGATTG
1 AAATACCCCCATAGGGTAAAATGACTG
* * ** * *
25538802 AAATATCCTCATAGAATAGAATGACCG
1 AAATACCCCCATAGGGTAAAATGACTG
*
25538829 AAATACCCCTATAGGGTAAAATGA-TCG
1 AAATACCCCCATAGGGTAAAATGACT-G
* * **
25538856 AAATA-CCCTACAGGGTAAAATGACCA
1 AAATACCCCCATAGGGTAAAATGACTG
25538882 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
* * *
25538909 AAATACCTCTATAGGTTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
25538936 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
25538963 TTATACCCTT
Statistics
Matches: 177, Mismatches: 34, Indels: 8
0.81 0.16 0.04
Matches are distributed among these distances:
26 22 0.12
27 154 0.87
28 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACTG
Found at i:25538971 original size:107 final size:108
Alignment explanation
Indices: 25538721--25538959 Score: 347
Period size: 107 Copynumber: 2.2 Consensus size: 108
25538711 ATCATAACCT
* * * * * *
25538721 AAATACCCCCATAGGATAAAATGATCGAAATACCCTCATAGGGTAAAATTATCGAAATACCCCTA
1 AAATACCCCCATAGGGTAAAATGATCGAAATACCCTCACAGGGTAAAATGACCAAAATACCCCCA
* *
25538786 TAGGGTAAAATGATTGAAATATCCTCATAGAATAGAATGACCG
66 TAGGGTAAAATGACTGAAATATCCTCATAGAATAAAATGACCG
*
25538829 AAATACCCCTATAGGGTAAAATGATCGAAATACCCT-ACAGGGTAAAATGACCAAAATACCCCCA
1 AAATACCCCCATAGGGTAAAATGATCGAAATACCCTCACAGGGTAAAATGACCAAAATACCCCCA
** *
25538893 TAGGGTAAAATGACTGAAATA-CCTCTATAGGTTAAAATGACTG
66 TAGGGTAAAATGACTGAAATATCCTC-ATAGAATAAAATGACCG
25538936 AAATACCCCCATAGGGTAAAATGA
1 AAATACCCCCATAGGGTAAAATGA
25538960 CTGTTATACC
Statistics
Matches: 117, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
106 4 0.03
107 79 0.68
108 34 0.29
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.22
Consensus pattern (108 bp):
AAATACCCCCATAGGGTAAAATGATCGAAATACCCTCACAGGGTAAAATGACCAAAATACCCCCA
TAGGGTAAAATGACTGAAATATCCTCATAGAATAAAATGACCG
Found at i:25541439 original size:16 final size:15
Alignment explanation
Indices: 25541414--25541447 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
25541404 AAAGTTGATA
*
25541414 ATAATTAATATATATT
1 ATAATAAATATA-ATT
25541430 ATAATAAATATAATT
1 ATAATAAATATAATT
25541445 ATA
1 ATA
25541448 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:25541571 original size:30 final size:31
Alignment explanation
Indices: 25541513--25541572 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
25541503 CGCCTTTGAA
* *
25541513 AATATTTACAAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAAGAGACACCAAATTTTT
25541544 AATATTTAC-AAAAAGAG-CAACCAAATTTT
1 AATATTTACAAAAAAGAGAC-ACCAAATTTT
25541573 GAAAATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 1 0.04
30 16 0.62
31 9 0.35
ACGTcount: A:0.50, C:0.12, G:0.07, T:0.32
Consensus pattern (31 bp):
AATATTTACAAAAAAGAGACACCAAATTTTT
Found at i:25550400 original size:14 final size:15
Alignment explanation
Indices: 25550361--25550403 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
25550351 ATAAAATGAA
*
25550361 ATTCGAGTTGAATTG
1 ATTCGAGTTAAATTG
* *
25550376 AATCCAGTTAAATTG
1 ATTCGAGTTAAATTG
25550391 -TTCGAGTTAAATT
1 ATTCGAGTTAAATT
25550404 AAAAAATTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (15 bp):
ATTCGAGTTAAATTG
Found at i:25550684 original size:18 final size:18
Alignment explanation
Indices: 25550662--25550697 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
25550652 AAATTTTAGA
*
25550662 ATTTTTATAAAT-ATTTT
1 ATTTTTAAAAATCATTTT
25550679 ATTTTTAAAAATCATTTT
1 ATTTTTAAAAATCATTTT
25550697 A
1 A
25550698 AATTATTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTTTAAAAATCATTTT
Found at i:25553252 original size:10 final size:9
Alignment explanation
Indices: 25553237--25553281 Score: 54
Period size: 10 Copynumber: 4.6 Consensus size: 9
25553227 AATTAACTAC
25553237 TTAAATTTAA
1 TTAAA-TTAA
25553247 TTAAATTAA
1 TTAAATTAA
25553256 TTATAATTAA
1 TTA-AATTAA
25553266 TTAAATGTTAA
1 TTAAA--TTAA
25553277 TTAAA
1 TTAAA
25553282 GTATAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
9 9 0.28
10 14 0.44
11 9 0.28
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (9 bp):
TTAAATTAA
Found at i:25553277 original size:15 final size:14
Alignment explanation
Indices: 25553237--25553280 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 14
25553227 AATTAACTAC
25553237 TTAAATTTAATTAAA
1 TTAAATTTAATT-AA
25553252 TT-AATTATAATTAA
1 TTAAATT-TAATTAA
25553266 TTAAATGTTAATTAA
1 TTAAAT-TTAATTAA
25553281 AGTATAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 8 0.31
15 17 0.65
16 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (14 bp):
TTAAATTTAATTAA
Found at i:25554703 original size:12 final size:11
Alignment explanation
Indices: 25554676--25554701 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
25554666 TTTATATATA
25554676 TTTTAGAATTT
1 TTTTAGAATTT
25554687 TTTTAGAATTT
1 TTTTAGAATTT
25554698 TTTT
1 TTTT
25554702 TAAATATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (11 bp):
TTTTAGAATTT
Found at i:25554711 original size:11 final size:12
Alignment explanation
Indices: 25554671--25554711 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 12
25554661 TTATCTTTAT
*
25554671 ATATATTTTAGA
1 ATATTTTTTAGA
25554683 AT-TTTTTTAGA
1 ATATTTTTTAGA
*
25554694 ATTTTTTTTA-A
1 ATATTTTTTAGA
25554705 ATATTTT
1 ATATTTT
25554712 GAATTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
11 17 0.65
12 9 0.35
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (12 bp):
ATATTTTTTAGA
Found at i:25554764 original size:25 final size:25
Alignment explanation
Indices: 25554735--25554784 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
25554725 TTTTTGTTGA
25554735 GAAAGAAACCAATTTGCTTATTTTC
1 GAAAGAAACCAATTTGCTTATTTTC
25554760 GAAAGAAACCAATTTGCTTATTTTC
1 GAAAGAAACCAATTTGCTTATTTTC
25554785 AAACTTGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (25 bp):
GAAAGAAACCAATTTGCTTATTTTC
Found at i:25557776 original size:22 final size:22
Alignment explanation
Indices: 25557749--25557794 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
25557739 TTTATTAACC
*
25557749 AAAATTAAATTGTA-TATAAATT
1 AAAATT-AATTATATTATAAATT
25557771 AAAATTAATTATATTATAAATT
1 AAAATTAATTATATTATAAATT
25557793 AA
1 AA
25557795 TAAATATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (22 bp):
AAAATTAATTATATTATAAATT
Found at i:25558853 original size:21 final size:20
Alignment explanation
Indices: 25558829--25558946 Score: 80
Period size: 21 Copynumber: 5.7 Consensus size: 20
25558819 AGAGTGTAAA
*
25558829 CAGGGGCACGTAAGTGCAATT
1 CAGGGGTACG-AAGTGCAATT
* *
25558850 CAGGGGTATCGAAGTACAA-A
1 CAGGGGTA-CGAAGTGCAATT
25558870 CAGGGGTACGCAAGTGCAATT
1 CAGGGGTACG-AAGTGCAATT
* * *
25558891 CTGGGGTACCGAAGTACAA-A
1 CAGGGGTA-CGAAGTGCAATT
* *
25558911 CAGGGGCA-GATAAGTGTAATT
1 CAGGGGTACG--AAGTGCAATT
25558932 CAGGGGTACCGAAGT
1 CAGGGGTA-CGAAGT
25558947 ACAGGCAGGG
Statistics
Matches: 74, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
18 1 0.01
19 2 0.03
20 27 0.36
21 39 0.53
22 4 0.05
23 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.33, T:0.18
Consensus pattern (20 bp):
CAGGGGTACGAAGTGCAATT
Found at i:25559025 original size:123 final size:123
Alignment explanation
Indices: 25558826--25559097 Score: 350
Period size: 123 Copynumber: 2.2 Consensus size: 123
25558816 ACCAGAGTGT
* * * *
25558826 AAACAGGGGCACGTAAGTGCAATTCAGGGGTATCGAAGTACAAACAGGGGTACGCAAGTGCAATT
1 AAACAGGGGCACGTATGTGCAATTCAAGGGTATCGAAGTACAAACAGGGGCACACAAGTGCAATT
* *
25558891 CTGGGGTACCGAAGTACAAACAGGGGCA-GATAAGTGTAATTCAGGGGTACCGAAGTAC
66 CAGGGGTACCGAAGTACAAACAGGGGCACG-TAAGTGCAATTCAGGGGTACCGAAGTAC
** * * * * *
25558949 AGGCAGGGGCACGCATGTGCAATTTAAGGGTATCGATGTACAAATAGGGGCATACATA-TGCAAT
1 AAACAGGGGCACGTATGTGCAATTCAAGGGTATCGAAGTACAAACAGGGGCACACA-AGTGCAAT
* * * *
25559013 TCAGGGGTACCGAAGTACGAACAGGGTCACGTATGTGCAATTCATGGGTACCGAAGTAC
65 TCAGGGGTACCGAAGTACAAACAGGGGCACGTAAGTGCAATTCAGGGGTACCGAAGTAC
*
25559072 AAACAGGGGCACGTATGCGCAATTCA
1 AAACAGGGGCACGTATGTGCAATTCA
25559098 TAGAATAATT
Statistics
Matches: 125, Mismatches: 22, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
123 123 0.98
124 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.31, T:0.19
Consensus pattern (123 bp):
AAACAGGGGCACGTATGTGCAATTCAAGGGTATCGAAGTACAAACAGGGGCACACAAGTGCAATT
CAGGGGTACCGAAGTACAAACAGGGGCACGTAAGTGCAATTCAGGGGTACCGAAGTAC
Found at i:25559098 original size:41 final size:41
Alignment explanation
Indices: 25558826--25559097 Score: 312
Period size: 41 Copynumber: 6.6 Consensus size: 41
25558816 ACCAGAGTGT
* *
25558826 AAACAGGGGCACGTAAGTGCAATTCAGGGGTATCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTAC
* * * *
25558867 AAACAGGGGTACGCAAGTGCAATTCTGGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTAC
* *
25558908 AAACAGGGGCA-GATAAGTGTAATTCAGGGGTACCGAAGTAC
1 AAACAGGGGCACG-TATGTGCAATTCAGGGGTACCGAAGTAC
** * * * * *
25558949 AGGCAGGGGCACGCATGTGCAATTTAAGGGTATCGATGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTAC
* *** *
25558990 AAATAGGGGCATACATATGCAATTCAGGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTAC
* * *
25559031 GAACAGGGTCACGTATGTGCAATTCATGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTAC
*
25559072 AAACAGGGGCACGTATGCGCAATTCA
1 AAACAGGGGCACGTATGTGCAATTCA
25559098 TAGAATAATT
Statistics
Matches: 191, Mismatches: 38, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
40 1 0.01
41 189 0.99
42 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.31, T:0.19
Consensus pattern (41 bp):
AAACAGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTAC
Found at i:25559841 original size:23 final size:18
Alignment explanation
Indices: 25559791--25559839 Score: 98
Period size: 18 Copynumber: 2.7 Consensus size: 18
25559781 TTCTTGTCAA
25559791 AAAATAATTAAATATTAT
1 AAAATAATTAAATATTAT
25559809 AAAATAATTAAATATTAT
1 AAAATAATTAAATATTAT
25559827 AAAATAATTAAAT
1 AAAATAATTAAAT
25559840 TATGTTAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
AAAATAATTAAATATTAT
Found at i:25589980 original size:5 final size:5
Alignment explanation
Indices: 25589970--25590006 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
25589960 ATTGTGTTAG
25589970 TTTAT TTTAT TTTAT TTTA- TTT-T TTTATT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT TTT
25590007 TCCCAAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
4 6 0.21
5 18 0.62
6 5 0.17
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (5 bp):
TTTAT
Found at i:25590003 original size:14 final size:14
Alignment explanation
Indices: 25589970--25590007 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
25589960 ATTGTGTTAG
25589970 TTTATTTTATTTTAT
1 TTTATTTT-TTTTAT
25589985 TTTA-TTTTTTTATT
1 TTTATTTTTTTTA-T
25589999 TTTATTTTT
1 TTTATTTTT
25590008 CCCAAATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 5 0.24
14 8 0.38
15 8 0.38
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTATTTTTTTTAT
Found at i:25590687 original size:33 final size:32
Alignment explanation
Indices: 25590641--25590716 Score: 98
Period size: 32 Copynumber: 2.3 Consensus size: 32
25590631 TTTCACACGC
* *
25590641 CCATGTGGACCACATGGGCTAGGCCAATTTAGG
1 CCATGTGGGCCACATGGGC-AAGCCAATTTAGG
* *
25590674 CCATGTGGGCCACATGGGCAAGCCATTTTGGG
1 CCATGTGGGCCACATGGGCAAGCCAATTTAGG
*
25590706 CCGTGTGGGCC
1 CCATGTGGGCC
25590717 CAAATTTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
32 20 0.53
33 18 0.47
ACGTcount: A:0.18, C:0.26, G:0.34, T:0.21
Consensus pattern (32 bp):
CCATGTGGGCCACATGGGCAAGCCAATTTAGG
Found at i:25597155 original size:7 final size:7
Alignment explanation
Indices: 25597142--25597207 Score: 73
Period size: 7 Copynumber: 9.4 Consensus size: 7
25597132 CCCGTTTAGA
25597142 GTTCAAG
1 GTTCAAG
*
25597149 ATTCAAG
1 GTTCAAG
*
25597156 GTTCGAG
1 GTTCAAG
25597163 GTTCAAG
1 GTTCAAG
25597170 GTTCAAG
1 GTTCAAG
25597177 GTTCAAG
1 GTTCAAG
25597184 GTT--AG
1 GTTCAAG
25597189 GTTTCAAG
1 G-TTCAAG
*
25597197 CTTCAGAG
1 GTTCA-AG
25597205 GTT
1 GTT
25597208 GGGGTTTAAG
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
5 3 0.06
6 2 0.04
7 38 0.78
8 6 0.12
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.32
Consensus pattern (7 bp):
GTTCAAG
Found at i:25597206 original size:21 final size:21
Alignment explanation
Indices: 25597150--25597237 Score: 69
Period size: 21 Copynumber: 4.3 Consensus size: 21
25597140 GAGTTCAAGA
25597150 TTCAAGGTTC-GAGGTTCAAGG
1 TTCAAGGTTCAGAGGTT-AAGG
25597171 TTCAAGGTTCA-AGGTT-AGG
1 TTCAAGGTTCAGAGGTTAAGG
* **
25597190 TTTCAAGCTTCAGAGGTTGGGG
1 -TTCAAGGTTCAGAGGTTAAGG
* * *
25597212 TTTAAGGTT-TGAGGTCAAGG
1 TTCAAGGTTCAGAGGTTAAGG
25597232 TT-AAGG
1 TTCAAGG
25597238 GTTTAGAGCT
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
19 7 0.13
20 19 0.35
21 27 0.49
22 2 0.04
ACGTcount: A:0.24, C:0.10, G:0.34, T:0.32
Consensus pattern (21 bp):
TTCAAGGTTCAGAGGTTAAGG
Found at i:25599713 original size:19 final size:19
Alignment explanation
Indices: 25599689--25599726 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
25599679 GTGTAATTTT
25599689 TAATG-ATTTCATTAAATTG
1 TAATGAATTT-ATTAAATTG
25599708 TAATGAAATTTATTAAATT
1 TAATG-AATTTATTAAATT
25599727 TGAAAAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.29
20 8 0.47
21 4 0.24
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (19 bp):
TAATGAATTTATTAAATTG
Found at i:25602218 original size:10 final size:11
Alignment explanation
Indices: 25602194--25602219 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
25602184 AGATACCAAC
25602194 AAAATTAAATA
1 AAAATTAAATA
25602205 AAAATTAAATA
1 AAAATTAAATA
25602216 AAAA
1 AAAA
25602220 ACAAATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAATTAAATA
Found at i:25604527 original size:41 final size:40
Alignment explanation
Indices: 25604472--25604637 Score: 170
Period size: 41 Copynumber: 4.0 Consensus size: 40
25604462 AAAGTACATC
*
25604472 CAGGGATACCGAAGTACAAACAGGGGCACGTATGTGCAATT
1 CAGGG-TACCGAAGTACAAACAGGGGCAAGTATGTGCAATT
* * ***
25604513 CAGAGGTACTGAAGTGCAAACAGGGGCAAGTATGCATAATT
1 CAG-GGTACCGAAGTACAAACAGGGGCAAGTATGTGCAATT
* * *
25604554 TAGGGGTACCGAAGTGCAAATAGGGGCAAGTATGTGCAATT
1 CA-GGGTACCGAAGTACAAACAGGGGCAAGTATGTGCAATT
* * * * *
25604595 TATGGGTGCCAAAGTACAAACAGGAGCACGTATGTGCAATT
1 CA-GGGTACCGAAGTACAAACAGGGGCAAGTATGTGCAATT
25604636 CA
1 CA
25604638 AAAATATTCT
Statistics
Matches: 103, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
41 100 0.97
42 3 0.03
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (40 bp):
CAGGGTACCGAAGTACAAACAGGGGCAAGTATGTGCAATT
Found at i:25604615 original size:82 final size:82
Alignment explanation
Indices: 25604473--25604628 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 82
25604463 AAGTACATCC
* ** * *
25604473 AGGGATACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAGAGGTACTGAAGTGCAAACAGGG
1 AGGGATACCGAAGTACAAACAGGGGCAAGTATGTGCAATTCAGAGGTACCAAAGTACAAACAGGA
25604538 GCAAGTATGCATAATTT
66 GCAAGTATGCATAATTT
* * * * *
25604555 AGGGGTACCGAAGTGCAAATAGGGGCAAGTATGTGCAATTTATG-GGTGCCAAAGTACAAACAGG
1 AGGGATACCGAAGTACAAACAGGGGCAAGTATGTGCAATTCA-GAGGTACCAAAGTACAAACAGG
*
25604619 AGCACGTATG
65 AGCAAGTATG
25604629 TGCAATTCAA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
82 61 0.98
83 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.31, T:0.19
Consensus pattern (82 bp):
AGGGATACCGAAGTACAAACAGGGGCAAGTATGTGCAATTCAGAGGTACCAAAGTACAAACAGGA
GCAAGTATGCATAATTT
Found at i:25612545 original size:66 final size:66
Alignment explanation
Indices: 25612439--25612562 Score: 194
Period size: 66 Copynumber: 1.9 Consensus size: 66
25612429 ATCCGGAAAG
* * *
25612439 CTGTCAGGTGCGGCGACAATTCTGGACACAATTTGGAATTAACCCATGCAGCGACATTGTGGACA
1 CTGTCAGGTGCGGCGACAATTCTGGACACAATCTAGAATTAACCCATACAGCGACATTGTGGACA
25612504 T
66 T
* * *
25612505 CTGTCAGGTGCGGCGACAATTCTGGACGCAATCTAGAATTAACTCATATAGCGACATT
1 CTGTCAGGTGCGGCGACAATTCTGGACACAATCTAGAATTAACCCATACAGCGACATT
25612563 AATGCAATAA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 52 1.00
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (66 bp):
CTGTCAGGTGCGGCGACAATTCTGGACACAATCTAGAATTAACCCATACAGCGACATTGTGGACA
T
Found at i:25613002 original size:41 final size:41
Alignment explanation
Indices: 25612929--25613043 Score: 133
Period size: 41 Copynumber: 2.8 Consensus size: 41
25612919 CATACATGGG
* * * *
25612929 TACC-AAAGTACAAACAGGAGCATGTATTTGCAATTTAGGGA
1 TACCGAAA-TACAAATAGGGGCATGTATATGCAATTCAGGGA
* *
25612970 TACCGAAATACAAATAGGGGCAAGTATATGCAATTCAGGGG
1 TACCGAAATACAAATAGGGGCATGTATATGCAATTCAGGGA
* * *
25613011 TACTGAAGTACAAATAGGGGCATGTATGTGCAA
1 TACCGAAATACAAATAGGGGCATGTATATGCAA
25613044 GTCAACAATA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 60 0.95
42 3 0.05
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (41 bp):
TACCGAAATACAAATAGGGGCATGTATATGCAATTCAGGGA
Found at i:25617398 original size:42 final size:42
Alignment explanation
Indices: 25617334--25617604 Score: 289
Period size: 42 Copynumber: 6.4 Consensus size: 42
25617324 TTTTTTAGAA
*
25617334 ACAAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTATC
1 ACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTATC
* * * * **
25617376 ACAACCGCCGCTAAAGACCAAGACCTTTAACGCCGATTTCCC
1 ACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTATC
25617418 ACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTT-TCC
1 ACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTAT-C
*
25617460 ACAAATGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTTTAT-
1 ACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGC---TTTATC
* * * *
25617504 ACAAATGCCGCTAAAGACCATGACCTTTAGCGGCACTTTTCGTC
1 ACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGC-TTT-ATC
* * * *
25617548 AAAAACGCCACTATAGATCAA-ACCTTTAGCGGCGCTTCTCA-C
1 ACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTT-T-ATC
*
25617590 AGAAACGCCGCTAAA
1 ACAAACGCCGCTAAA
25617605 AACATAACTT
Statistics
Matches: 194, Mismatches: 27, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
42 125 0.64
43 16 0.08
44 49 0.25
45 3 0.02
46 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (42 bp):
ACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTATC
Found at i:25617600 original size:86 final size:85
Alignment explanation
Indices: 25617334--25617604 Score: 323
Period size: 84 Copynumber: 3.2 Consensus size: 85
25617324 TTTTTTAGAA
* * *
25617334 ACAAACGCCGCTAAAGAACAAGACCTTTAGCGGCGC-TTTATCACAACCGCCGCTAAAGACCAAG
1 ACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGACCAAG
* * * *
25617398 ACCTTTAACGCCGATTTCCC
66 ACCTTTAGCGGCGCTTTCAC
*
25617418 ACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTC-CACAAATGCCGCTAAAGACCAAG
1 ACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGACCAAG
* *
25617482 ACCTTTAGCGGCGCTTTTTTAT
66 ACCTTTAGCGGCGC--TTTCAC
* * * * * * *
25617504 ACAAATGCCGCTAAAGACCATGACCTTTAGCGGCACTTTTCGTCAAAAACGCCACTATAGATCAA
1 ACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTC-TCACAAACGCCGCTAAAGACCAA
25617569 -ACCTTTAGCGGCGCTTCTCAC
65 GACCTTTAGCGGCGCTT-TCAC
*
25617590 AGAAACGCCGCTAAA
1 ACAAACGCCGCTAAA
25617605 AACATAACTT
Statistics
Matches: 159, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
84 67 0.42
85 5 0.03
86 56 0.35
87 14 0.09
88 17 0.11
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (85 bp):
ACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGACCAAG
ACCTTTAGCGGCGCTTTCAC
Found at i:25618827 original size:24 final size:24
Alignment explanation
Indices: 25618798--25618847 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
25618788 CTGATGAAAG
*
25618798 ATGAACCGTTAAATACATACAGAA
1 ATGAACCGTTAAACACATACAGAA
* *
25618822 ATGAACTGTTCAACACATACAGAA
1 ATGAACCGTTAAACACATACAGAA
25618846 AT
1 AT
25618848 AACTTACTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.48, C:0.18, G:0.12, T:0.22
Consensus pattern (24 bp):
ATGAACCGTTAAACACATACAGAA
Found at i:25622581 original size:132 final size:134
Alignment explanation
Indices: 25622347--25622597 Score: 452
Period size: 135 Copynumber: 1.9 Consensus size: 134
25622337 CTAAAATAGA
25622347 TAGTTGTCTATTCATATCAATATGTTACTTTTTTTATTTATTTATCAATGTTTTTTTTAAATCTA
1 TAGTTGTCTATTCATATCAATATGTTACTTTTTTTATTTATTTATCAA--TTTTTTTTAAATCTA
*
25622412 ATATTTAAATATATCAAATGGTTTAGATTAAATA-TTTTAAATATAAAAGCATTAATTTGAAGAA
64 ATATTTAAATATATCAAATAGTTTAGATTAAATATTTTTAAATATAAAAGCATTAATTTGAAGAA
25622476 CTATTT
129 CTATTT
25622482 TAGTTGTCTATTCATATCAATATGTTACTTTTTTTATTTATTTATCAA-TTTTTTTAAATCTAAT
1 TAGTTGTCTATTCATATCAATATGTTACTTTTTTTATTTATTTATCAATTTTTTTTAAATCTAAT
*
25622546 ATTTACATATATCAAATAGTTTAGATTAAATATTTTTAAATATAAAAGCATT
66 ATTTAAATATATCAAATAGTTTAGATTAAATATTTTTAAATATAAAAGCATT
25622598 TTTAAATATA
Statistics
Matches: 113, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
132 46 0.41
133 19 0.17
135 48 0.42
ACGTcount: A:0.36, C:0.07, G:0.06, T:0.50
Consensus pattern (134 bp):
TAGTTGTCTATTCATATCAATATGTTACTTTTTTTATTTATTTATCAATTTTTTTTAAATCTAAT
ATTTAAATATATCAAATAGTTTAGATTAAATATTTTTAAATATAAAAGCATTAATTTGAAGAACT
ATTT
Found at i:25623950 original size:41 final size:41
Alignment explanation
Indices: 25623837--25624028 Score: 273
Period size: 41 Copynumber: 4.7 Consensus size: 41
25623827 AGATTTTATT
*
25623837 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGG-TC-AGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCACGAGC
* *
25623876 ATTAGCGGCGCTTTTTTCAGAAACGCCGCTAAAGGCACGAGT
1 ATTAGCGGCGC-TTTTTCAAAAACGCCGCTAAAGGCACGAGC
* *
25623918 ATTAGCAGCGCTTTATCAAAAACGCCGCTAAAGGTCA-GAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGG-CACGAGC
* *
25623959 ATTAGCGGCGCTTTTTCAAAAACGTCGCTAAAAGCACGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCACGAGC
*
25624000 ATTAGCGGCGCTTTTCCAAAAACGCCGCT
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCT
25624029 TAATGCCCCA
Statistics
Matches: 135, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 11 0.08
40 24 0.18
41 86 0.64
42 14 0.10
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCACGAGC
Found at i:25624120 original size:39 final size:39
Alignment explanation
Indices: 25624071--25624206 Score: 132
Period size: 40 Copynumber: 3.4 Consensus size: 39
25624061 TGGGCTTAGG
* *
25624071 TTTTTTGCGGCGCTTTTTGGAAAA-CGCCGCTAATGCTTA
1 TTTTTAGCGGCG-TTTTTGCAAAATCGCCGCTAATGCTTA
* * * *
25624110 TTTTTGGCGGCG-TTTTCCAAAATTCACCGCTAATGCTCGA
1 TTTTTAGCGGCGTTTTTGCAAAA-TCGCCGCTAATGCT-TA
* * *
25624150 TCTTTAGCGGCGTTTTTGTAAAAGCGCCGCTAATGCTTGA
1 TTTTTAGCGGCGTTTTTGCAAAATCGCCGCTAATGCTT-A
*
25624190 TTTTTAGTGGCGTTTTT
1 TTTTTAGCGGCGTTTTT
25624207 AATTCAAACG
Statistics
Matches: 78, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
37 8 0.10
39 23 0.29
40 39 0.50
41 8 0.10
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.40
Consensus pattern (39 bp):
TTTTTAGCGGCGTTTTTGCAAAATCGCCGCTAATGCTTA
Found at i:25624229 original size:12 final size:12
Alignment explanation
Indices: 25624212--25624237 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
25624202 TTTTTAATTC
25624212 AAACGCCGCTAA
1 AAACGCCGCTAA
25624224 AAACGCCGCTAA
1 AAACGCCGCTAA
25624236 AA
1 AA
25624238 GCCTGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:25627255 original size:17 final size:17
Alignment explanation
Indices: 25627233--25627267 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
25627223 GACTGTGTGC
25627233 CTACATACAACCCGTTG
1 CTACATACAACCCGTTG
25627250 CTACATACAACCCGTTG
1 CTACATACAACCCGTTG
25627267 C
1 C
25627268 CTTAAAGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.37, G:0.11, T:0.23
Consensus pattern (17 bp):
CTACATACAACCCGTTG
Found at i:25629362 original size:3 final size:3
Alignment explanation
Indices: 25629354--25629384 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
25629344 TATAAATTTA
25629354 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
25629385 TATAGATCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:25632009 original size:12 final size:12
Alignment explanation
Indices: 25631992--25632018 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
25631982 CAAAATTCAA
25631992 ATTTTAAAAAAT
1 ATTTTAAAAAAT
25632004 ATTTTAAAAAAT
1 ATTTTAAAAAAT
25632016 ATT
1 ATT
25632019 ACAAAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
ATTTTAAAAAAT
Found at i:25632071 original size:17 final size:17
Alignment explanation
Indices: 25632037--25632071 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
25632027 ATTGACAATT
* *
25632037 TAAAAAAATTATTTAAA
1 TAAAAAAATTACTAAAA
25632054 TAAAAAAATTACTAAAA
1 TAAAAAAATTACTAAAA
25632071 T
1 T
25632072 TTTCCAAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
TAAAAAAATTACTAAAA
Found at i:25632153 original size:16 final size:17
Alignment explanation
Indices: 25632118--25632162 Score: 60
Period size: 15 Copynumber: 2.8 Consensus size: 17
25632108 AATAATCAGA
25632118 AAAAATAA-AATACATT
1 AAAAATAATAATACATT
25632134 -AAAATAATAA-ACATT
1 AAAAATAATAATACATT
25632149 AAAAATATATAATA
1 AAAAATA-ATAATA
25632163 TTCTTACCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.48
16 8 0.32
17 4 0.16
18 1 0.04
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAAATAATAATACATT
Found at i:25637165 original size:14 final size:15
Alignment explanation
Indices: 25637137--25637165 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
25637127 TTTATTTTAT
25637137 TATATCATAGTTAGA
1 TATATCATAGTTAGA
25637152 TATATCAT-GTTAGA
1 TATATCATAGTTAGA
25637166 GGGTGTGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (15 bp):
TATATCATAGTTAGA
Found at i:25638417 original size:64 final size:64
Alignment explanation
Indices: 25638349--25638560 Score: 180
Period size: 64 Copynumber: 3.3 Consensus size: 64
25638339 ATCATTAAGA
*
25638349 TTAGCTGATTTAATATCGTAACCTAAGTTCATTTGATTTAAGATCATGAAAAATTTTATTTGAG
1 TTAGCTGATTTAATATCGCAACCTAAGTTCATTTGATTTAAGATCATGAAAAATTTTATTTGAG
* ** * * * * **
25638413 TTAGCTGATTTAATATCGCAACTCCAAACAACTCA-CTAATTTAAGATC--G-CAACTGATATCA
1 TTAGCTGATTTAATATCGCAA--CC-TA-AGTTCATTTGATTTAAGATCATGAAAAATTTTAT--
*
25638474 TTAAGG
60 TTGA-G
* * * * *
25638480 TTAGTTGATTTAATATCGCAATCTAAGTTCGTTTGATTCAAGATCATGAACAATTTTATTTGAG
1 TTAGCTGATTTAATATCGCAACCTAAGTTCATTTGATTTAAGATCATGAAAAATTTTATTTGAG
*
25638544 TTAGTTGATTTAATATC
1 TTAGCTGATTTAATATC
25638561 ATAGCTCTGA
Statistics
Matches: 111, Mismatches: 26, Indels: 22
0.70 0.16 0.14
Matches are distributed among these distances:
63 3 0.03
64 55 0.50
65 5 0.05
66 6 0.05
67 38 0.34
68 4 0.04
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (64 bp):
TTAGCTGATTTAATATCGCAACCTAAGTTCATTTGATTTAAGATCATGAAAAATTTTATTTGAG
Found at i:25638587 original size:131 final size:131
Alignment explanation
Indices: 25638260--25638560 Score: 449
Period size: 131 Copynumber: 2.3 Consensus size: 131
25638250 TATTTTATCT
* * *
25638260 ATCATGAACAATTTTATTTGAGTTAACTGATTTAAGATCGCATCTCCGAACAACTCGCTGATTTA
1 ATCATGAACAATTTTATTTGAGTTAGCTGATTTAATATCGCAACTCCGAACAACTCGCTGATTTA
* * * * *
25638325 ATATTGCAGCTGATATCATTAAGATTAGCTGATTTAATATCGTAACCTAAGTTCATTTGATTTAA
66 AGATCGCAACTGATATCATTAAGATTAGCTGATTTAATATCGCAACCTAAGTTCATTTGATTCAA
25638390 G
131 G
* * * *
25638391 ATCATGAAAAATTTTATTTGAGTTAGCTGATTTAATATCGCAACTCCAAACAACTCACTAATTTA
1 ATCATGAACAATTTTATTTGAGTTAGCTGATTTAATATCGCAACTCCGAACAACTCGCTGATTTA
* * * *
25638456 AGATCGCAACTGATATCATTAAGGTTAGTTGATTTAATATCGCAATCTAAGTTCGTTTGATTCAA
66 AGATCGCAACTGATATCATTAAGATTAGCTGATTTAATATCGCAACCTAAGTTCATTTGATTCAA
25638521 G
131 G
*
25638522 ATCATGAACAATTTTATTTGAGTTAGTTGATTTAATATC
1 ATCATGAACAATTTTATTTGAGTTAGCTGATTTAATATC
25638561 ATAGCTCTGA
Statistics
Matches: 152, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
131 152 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (131 bp):
ATCATGAACAATTTTATTTGAGTTAGCTGATTTAATATCGCAACTCCGAACAACTCGCTGATTTA
AGATCGCAACTGATATCATTAAGATTAGCTGATTTAATATCGCAACCTAAGTTCATTTGATTCAA
G
Found at i:25638651 original size:95 final size:95
Alignment explanation
Indices: 25638485--25638688 Score: 275
Period size: 95 Copynumber: 2.1 Consensus size: 95
25638475 TAAGGTTAGT
** * *
25638485 TGATTTAATATCGCAATCTAAGTTCGTTTGATTCAAGATCATGAACAATTTTATTTGAGTTAGTT
1 TGATTTAATATCATAACCTAAGTTCATTTGATTCAAGATCATGAACAATTTTATTTGAGTTAGTT
* * * *
25638550 GATTTAATATCATAGCTCTGAATAGCTCGC
66 GATTTAAGATCACAACTCCGAATAGCTCGC
* *
25638580 TGGTTTAATATCATAACCTAAGTTCATTT-AGTTTAAGATCATGAACAATTTTATTTGAGTTAGT
1 TGATTTAATATCATAACCTAAGTTCATTTGA-TTCAAGATCATGAACAATTTTATTTGAGTTAGT
* *
25638644 TGATTTAAGATCGCAACTCCGGATAGCTCGC
65 TGATTTAAGATCACAACTCCGAATAGCTCGC
*
25638675 TGATTTAAGATCAT
1 TGATTTAATATCAT
25638689 GACTGATATC
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
94 1 0.01
95 93 0.99
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (95 bp):
TGATTTAATATCATAACCTAAGTTCATTTGATTCAAGATCATGAACAATTTTATTTGAGTTAGTT
GATTTAAGATCACAACTCCGAATAGCTCGC
Found at i:25638755 original size:226 final size:226
Alignment explanation
Indices: 25638352--25638882 Score: 713
Period size: 226 Copynumber: 2.3 Consensus size: 226
25638342 ATTAAGATTA
25638352 GCTGATTTAATATCGTAACCTAAGTTCATTTGATTTAAGATCATGAAAAATTTTATTTGAGTTAG
1 GCTGATTTAATATCGTAACCTAAGTTCATTTGATTTAAGATCATGAAAAATTTTATTTGAGTTAG
* *
25638417 CTGATTTAATATCGCAACTCCAAACAACTCACTAATTTAAGATCGCAACTGATATCATTAAGGTT
66 CTGATTTAAGATCGCAACTCCAAACAACTCACTAATTTAAGATCACAACTGATATCATTAAGGTT
* * * * * * *
25638482 AGTTGATTTAATATCGCAATCTAAGTTCGTTTGATTCAAGATCATGAACAATTTTATTTGAGTTA
131 AGCTAATTTAAGATCGCAACCTAAGTTCATTTGATTCAAGATCATGAACAATTTCACTTGAGTTA
* * * * *
25638547 GTTGATTTAATATCATAGCTCTGAATAGCTC
196 GTTGATTTAAGATCACAACTCCGAACAGCTC
* * *
25638578 GCTGGTTTAATATCATAACCTAAGTTCATTT-AGTTTAAGATCATGAACAATTTTATTTGAGTTA
1 GCTGATTTAATATCGTAACCTAAGTTCATTTGA-TTTAAGATCATGAAAAATTTTATTTGAGTTA
* ** * * * * **
25638642 GTTGATTTAAGATCGCAACTCCGGATAGCTCGCTGATTTAAGATCATGACTGATATCATTAAGGT
65 GCTGATTTAAGATCGCAACTCCAAACAACTCACTAATTTAAGATCACAACTGATATCATTAAGGT
* * *
25638707 TAGCTAATTTAAGATCGCAACCTAATTTCATTTGATTTAAGCTCATGAACAATTTCACTTGAGTT
130 TAGCTAATTTAAGATCGCAACCTAAGTTCATTTGATTCAAGATCATGAACAATTTCACTTGAGTT
* *
25638772 AGTTGATTTAAGATCGCAACTCCGAACAGTTC
195 AGTTGATTTAAGATCACAACTCCGAACAGCTC
* * * * * *
25638804 GTTGATTTAAGATCGTAACCTAAGTTCATTTGATTTAAGACCATGAATAATTTTATTTAAGCTAG
1 GCTGATTTAATATCGTAACCTAAGTTCATTTGATTTAAGATCATGAAAAATTTTATTTGAGTTAG
25638869 CTGATTTAAGATCG
66 CTGATTTAAGATCG
25638883 TAGCTAATAT
Statistics
Matches: 263, Mismatches: 40, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
225 1 0.00
226 261 0.99
227 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (226 bp):
GCTGATTTAATATCGTAACCTAAGTTCATTTGATTTAAGATCATGAAAAATTTTATTTGAGTTAG
CTGATTTAAGATCGCAACTCCAAACAACTCACTAATTTAAGATCACAACTGATATCATTAAGGTT
AGCTAATTTAAGATCGCAACCTAAGTTCATTTGATTCAAGATCATGAACAATTTCACTTGAGTTA
GTTGATTTAAGATCACAACTCCGAACAGCTC
Found at i:25639608 original size:12 final size:12
Alignment explanation
Indices: 25639578--25639609 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
25639568 CCTATGTAAC
*
25639578 TTTTCAACCTCT
1 TTTTCAGCCTCT
25639590 TTTTCAGCCTCT
1 TTTTCAGCCTCT
25639602 TTTTCAGC
1 TTTTCAGC
25639610 AAAGGTGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.31, G:0.06, T:0.50
Consensus pattern (12 bp):
TTTTCAGCCTCT
Found at i:25642947 original size:13 final size:13
Alignment explanation
Indices: 25642929--25642954 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25642919 GGCTTCCCCT
25642929 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
25642942 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
25642955 AGTTTAGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.31, G:0.08, T:0.62
Consensus pattern (13 bp):
TTCCTTCTGTTTC
Found at i:25642999 original size:13 final size:13
Alignment explanation
Indices: 25642981--25643006 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25642971 AACTTAGCCG
25642981 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
25642994 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
25643007 AGTTTAGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.31, G:0.08, T:0.62
Consensus pattern (13 bp):
TTCCTTCTGTTTC
Found at i:25645475 original size:91 final size:91
Alignment explanation
Indices: 25645319--25645526 Score: 292
Period size: 91 Copynumber: 2.3 Consensus size: 91
25645309 GAATCCTTAG
* *
25645319 TAAATTCATATAAGAATATTTTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
* *
25645384 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGTAATAATT-ATTATTTTAAATTATA
* *
25645411 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTATA
*
25645476 TGTAATAATTATTTTTTTAAATTATA
66 TGTAATAATTATTATTTTAAATTATA
* * * *
25645502 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
25645527 GTTATAATTA
Statistics
Matches: 104, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
91 85 0.82
92 19 0.18
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:25645703 original size:15 final size:15
Alignment explanation
Indices: 25645668--25645709 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
25645658 TTAAGAATTT
*
25645668 TATTAAATTAT-ATA
1 TATTTAATTATAATA
25645682 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
25645696 TATTTAATAATAAT
1 TATTTAATTATAAT
25645710 TATGTTAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:25645801 original size:61 final size:61
Alignment explanation
Indices: 25645736--25646043 Score: 251
Period size: 61 Copynumber: 5.1 Consensus size: 61
25645726 TTACAGTATC
25645736 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * ** * * * * * * * * * *
25645797 ATATATTTTAATTAAAATATATTTA-ATAATAAT-TGT-GTTAATTTA-TATTTTA-CAGTATC
1 ATATATTATGATTTGAGTAAATTCATATAAGAATAT-TAATT-ATTAAGAATTTTATTA-AATT
25645856 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * * * * *
25645917 ATATATTTTAATTAT-AATATATTTA-ATAA-AA-ATTATGTTAATTTA-TATTTTA-CAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAATATTA-ATT-ATTAAGAATTTTATTA-AATT
25645976 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
25646037 ATATATT
1 ATATATT
25646044 TTAATTAAAA
Statistics
Matches: 179, Mismatches: 50, Indels: 36
0.68 0.19 0.14
Matches are distributed among these distances:
58 7 0.04
59 59 0.33
60 40 0.22
61 66 0.37
62 7 0.04
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.48
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:25645812 original size:18 final size:17
Alignment explanation
Indices: 25645784--25645818 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
25645774 ATTATTAAGA
*
25645784 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
25645801 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
25645819 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:25645820 original size:120 final size:120
Alignment explanation
Indices: 25645542--25646075 Score: 939
Period size: 120 Copynumber: 4.4 Consensus size: 120
25645532 AATTATTTTA
* *
25645542 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCA-
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT--AATTTAT-AT
*
25645604 TTTATAGTATCATATATTATGATTTGAGTAAATTCATATATAGAATATTAATTATTAAG
63 TTTACAGTATCATATATTATGATTTGAGTAAATTCATATA-AGAATATTAATTATTAAG
* *
25645663 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAGTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
25645728 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
25645783 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTGTGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
25645848 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
25645903 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAAAAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
25645968 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
25646023 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
25646076 TAAATATGAT
Statistics
Matches: 397, Mismatches: 13, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
120 308 0.78
121 87 0.22
122 2 0.01
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:25646040 original size:59 final size:59
Alignment explanation
Indices: 25645616--25646040 Score: 240
Period size: 59 Copynumber: 7.1 Consensus size: 59
25645606 TATAGTATCA
25645616 TATATTATGATTTGAGTAAATTCATATATAGAATATTAATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTGAGTAAATTCATATA-AGAATATTAATTATTAAGAATTTTATTAAAT
* * * * * * * * *
25645676 TATA-TAT--TTTAATTATAATAT-ATTTAATAATAATTATGTTAGTTTA-TATTTTA-CAGTAT
1 TATATTATGATTTGAGTA-AAT-TCATATAAGAAT-ATTA-ATTA-TTAAGAATTTTATTA-AAT
25645735 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
* * * ** * * *
25645796 TATA-TAT--TTTAATTAAAAT-ATAT-TTAATAATAATTGTGT--TAATTTATATTTTACAGTA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTAT-TAAGAATTT-TA--TTA-A--A
25645854 T
59 T
25645855 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
* * * * * * * * * *
25645916 TATA-TAT--TTTAATTATAATAT-ATTTAATAAAAATTATGTTAATTTA-TATTTTA-CAGTAT
1 TATATTATGATTTGAGTA-AAT-TCATATAA-GAATATTA-ATT-ATTAAGAATTTTATTA-AAT
25645975 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
25646036 TATAT
1 TATAT
25646041 ATTTTAATTA
Statistics
Matches: 267, Mismatches: 54, Indels: 89
0.65 0.13 0.22
Matches are distributed among these distances:
53 5 0.02
54 12 0.04
55 5 0.02
56 18 0.07
57 19 0.07
58 26 0.10
59 40 0.15
60 18 0.07
61 35 0.13
62 23 0.09
63 20 0.07
64 24 0.09
65 5 0.02
66 12 0.04
67 5 0.02
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (59 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
Found at i:25646052 original size:18 final size:17
Alignment explanation
Indices: 25646024--25646058 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
25646014 ATTATTAAGA
*
25646024 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
25646041 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
25646059 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:25646176 original size:157 final size:157
Alignment explanation
Indices: 25646012--25646328 Score: 598
Period size: 157 Copynumber: 2.0 Consensus size: 157
25646002 ATAAGAATAT
25646012 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
25646077 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
25646142 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
25646169 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
25646234 AAATATGATTAAATTATTTATTATTGATAATAATAATTTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
25646299 TAATCATTTACCAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
25646326 TAA
1 TAA
25646329 GGGTATTCTA
Statistics
Matches: 156, Mismatches: 4, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
157 156 1.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:25646209 original size:18 final size:17
Alignment explanation
Indices: 25646181--25646215 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
25646171 ATTATTAAGA
*
25646181 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
25646198 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
25646216 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:25646249 original size:75 final size:75
Alignment explanation
Indices: 25646013--25646251 Score: 200
Period size: 75 Copynumber: 3.1 Consensus size: 75
25646003 TAAGAATATT
25646013 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
25646078 AATATGATTA
66 AATATGATTA
* ** * * * * *
25646088 AATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATA-A--CAATAATAATT
1 AATTATTAAGAATT-TTATT-A-AA--TTA-TATATTTTAATTAA-AATATATTTAATAATAATT
**** * * *
25646150 -TACCAAAACAAAT-TTCTGCT
59 AT-GTTTAA-ATATGAT-T--A
25646170 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
25646235 AATATGATTA
66 AATATGATTA
25646245 AATTATT
1 AATTATT
25646252 TATTATTGAT
Statistics
Matches: 117, Mismatches: 30, Indels: 34
0.65 0.17 0.19
Matches are distributed among these distances:
75 22 0.19
76 16 0.14
77 8 0.07
78 16 0.14
79 16 0.14
80 8 0.07
81 16 0.14
82 15 0.13
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (75 bp):
AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTA
Found at i:25652911 original size:20 final size:19
Alignment explanation
Indices: 25652879--25652920 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
25652869 TAAAAAATTC
25652879 AAAATTTCAAAAATTATGAA
1 AAAATTTCAAAAATTAT-AA
25652899 AAAATCTTC-AAAATTATAA
1 AAAAT-TTCAAAAATTATAA
25652918 AAA
1 AAA
25652921 TATATTAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.24
20 13 0.62
21 3 0.14
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAATTTCAAAAATTATAA
Found at i:25653774 original size:38 final size:38
Alignment explanation
Indices: 25653723--25653806 Score: 159
Period size: 38 Copynumber: 2.2 Consensus size: 38
25653713 AGGTTTAAAT
*
25653723 GTTTCTAATTGCACTCTTTTAACTACCTTTAGGAGTTG
1 GTTTCAAATTGCACTCTTTTAACTACCTTTAGGAGTTG
25653761 GTTTCAAATTGCACTCTTTTAACTACCTTTAGGAGTTG
1 GTTTCAAATTGCACTCTTTTAACTACCTTTAGGAGTTG
25653799 GTTTCAAA
1 GTTTCAAA
25653807 ACAAACACCA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 45 1.00
ACGTcount: A:0.24, C:0.18, G:0.15, T:0.43
Consensus pattern (38 bp):
GTTTCAAATTGCACTCTTTTAACTACCTTTAGGAGTTG
Found at i:25660039 original size:24 final size:26
Alignment explanation
Indices: 25660012--25660074 Score: 64
Period size: 25 Copynumber: 2.5 Consensus size: 26
25660002 ATTAACTTGC
25660012 ATGAGCTTCTCGATT-A-CGGCTCT-T
1 ATGAGCTTCTCGATTAATC-GCTCTCT
*
25660036 ATGAG-TTGCCCGATTAATCGCTCTCT
1 ATGAGCTT-CTCGATTAATCGCTCTCT
25660062 A-GAGCTTCTCGAT
1 ATGAGCTTCTCGAT
25660075 ATTTGGCTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
23 2 0.06
24 11 0.34
25 14 0.44
26 5 0.16
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (26 bp):
ATGAGCTTCTCGATTAATCGCTCTCT
Found at i:25660112 original size:24 final size:25
Alignment explanation
Indices: 25660078--25660129 Score: 79
Period size: 24 Copynumber: 2.1 Consensus size: 25
25660068 TCTCGATATT
*
25660078 TGGCTCTCTTGAGCTTCCCATT-TA
1 TGGCTCGCTTGAGCTTCCCATTATA
*
25660102 TGGCTCGCTTGAGCTTCCCCTTATA
1 TGGCTCGCTTGAGCTTCCCATTATA
25660127 TGG
1 TGG
25660130 AACACATGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 20 0.80
25 5 0.20
ACGTcount: A:0.12, C:0.29, G:0.21, T:0.38
Consensus pattern (25 bp):
TGGCTCGCTTGAGCTTCCCATTATA
Found at i:25662814 original size:27 final size:26
Alignment explanation
Indices: 25662776--25662916 Score: 131
Period size: 27 Copynumber: 5.3 Consensus size: 26
25662766 ATTCATGGGC
*
25662776 AAATGATAGAAATACTCTCGAAGGGTA
1 AAATGAT-GAAATACCCTCGAAGGGTA
25662803 AAATGACTGAAATACCCTCGAAGGGTA
1 AAATGA-TGAAATACCCTCGAAGGGTA
* ** * *
25662830 AAATAAAAAAATACCCTCAAAGGATA
1 AAATGATGAAATACCCTCGAAGGGTA
* *
25662856 AAATGATTGAAATACCCCCGAAGGGTG
1 AAATGA-TGAAATACCCTCGAAGGGTA
* * *
25662883 AAATGATCAAAATACCC-CCATAGTGTA
1 AAATGAT-GAAATACCCTCGA-AGGGTA
25662910 AAATGAT
1 AAATGAT
25662917 TGTTATACCC
Statistics
Matches: 93, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
26 24 0.26
27 68 0.73
28 1 0.01
ACGTcount: A:0.46, C:0.16, G:0.18, T:0.20
Consensus pattern (26 bp):
AAATGATGAAATACCCTCGAAGGGTA
Found at i:25662867 original size:53 final size:53
Alignment explanation
Indices: 25662776--25662927 Score: 153
Period size: 53 Copynumber: 2.8 Consensus size: 53
25662766 ATTCATGGGC
* * * * *
25662776 AAATGATAGAAATACTCTCGAAGGGTAAAATGACTGAAATACCCTCGAAGGGTA
1 AAATGAAAAAAATACCCTC-AAAGGTAAAATGATTGAAATACCCTCGAAGGGTA
* *
25662830 AAAT-AAAAAAATACCCTCAAAGGATAAAATGATTGAAATACCCCCGAAGGGTG
1 AAATGAAAAAAATACCCTCAAAGG-TAAAATGATTGAAATACCCTCGAAGGGTA
** * * **
25662883 AAATGATCAAAATACCCCCATAGTGTAAAATGATTGTTATACCCT
1 AAATGAAAAAAATACCCTCAAAG-GTAAAATGATTGAAATACCCT
25662928 TAGGAGTTGA
Statistics
Matches: 81, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
52 4 0.05
53 41 0.51
54 35 0.43
55 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.22
Consensus pattern (53 bp):
AAATGAAAAAAATACCCTCAAAGGTAAAATGATTGAAATACCCTCGAAGGGTA
Found at i:25663361 original size:28 final size:28
Alignment explanation
Indices: 25663308--25663370 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
25663298 CCCACATTAC
*
25663308 ACTGTTACTGCTTAGGGATAAGGCCCAG
1 ACTGTTACTGCTTAAGGATAAGGCCCAG
*
25663336 ACTGTTACTGCTTAAGGCTCAA-GCCCAG
1 ACTGTTACTGCTTAAGGAT-AAGGCCCAG
*
25663364 GCTGTTA
1 ACTGTTA
25663371 TTGCATGTCG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 29 0.94
29 2 0.06
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (28 bp):
ACTGTTACTGCTTAAGGATAAGGCCCAG
Found at i:25670225 original size:25 final size:24
Alignment explanation
Indices: 25670197--25670303 Score: 81
Period size: 25 Copynumber: 4.3 Consensus size: 24
25670187 GCTTTTATGT
25670197 GCTTCCCGATTAATGGCTCTCTAGA
1 GCTTCCCGA-TAATGGCTCTCTAGA
* * *
25670222 GCTTCCCGATATTTGGCTCTATTGA
1 GCTTCCCGATA-ATGGCTCTCTAGA
* * *
25670247 GCTTCCCGTTTATGGCTC-GTATGA
1 GCTTCCCGATAATGGCTCTCTA-GA
** * *
25670271 GCTTTTCGATAATTGGCTCGCAAGA
1 GCTTCCCGATAA-TGGCTCTCTAGA
25670296 GCTTCCCG
1 GCTTCCCG
25670304 GTTATATAGC
Statistics
Matches: 62, Mismatches: 16, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
23 1 0.02
24 18 0.29
25 42 0.68
26 1 0.02
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.35
Consensus pattern (24 bp):
GCTTCCCGATAATGGCTCTCTAGA
Found at i:25670830 original size:17 final size:17
Alignment explanation
Indices: 25670808--25670850 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
25670798 TTATAGTAAC
25670808 TTGGAAGCTCATTAAGG
1 TTGGAAGCTCATTAAGG
*
25670825 TTGGAAGCTCGTTAAGG
1 TTGGAAGCTCATTAAGG
25670842 TTGGAAGCT
1 TTGGAAGCT
25670851 GGTCGAAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.26, C:0.12, G:0.33, T:0.30
Consensus pattern (17 bp):
TTGGAAGCTCATTAAGG
Found at i:25677645 original size:10 final size:10
Alignment explanation
Indices: 25677621--25677655 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
25677611 TCTTTTGAAC
*
25677621 TTTTAT-TTC
1 TTTTATGTTA
25677630 TTTTATGTTA
1 TTTTATGTTA
25677640 TTTTATGTTA
1 TTTTATGTTA
25677650 TTTTAT
1 TTTTAT
25677656 TATTATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 6 0.25
10 18 0.75
ACGTcount: A:0.17, C:0.03, G:0.06, T:0.74
Consensus pattern (10 bp):
TTTTATGTTA
Found at i:25680080 original size:33 final size:33
Alignment explanation
Indices: 25680034--25680141 Score: 137
Period size: 33 Copynumber: 3.2 Consensus size: 33
25680024 TATACTATTT
*
25680034 TTGGTGTGCTGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
*
25680067 TTGGTGTGATGGTTGGTTTAGCTCTTATGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
* * * *
25680100 TTGGTATGATGGATGGATTGGCTC-GAGTGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTA-TGAGCA
25680133 TCTGGTGTG
1 T-TGGTGTG
25680142 TTTGATTGGT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
32 1 0.02
33 58 0.89
34 6 0.09
ACGTcount: A:0.16, C:0.10, G:0.36, T:0.38
Consensus pattern (33 bp):
TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
Found at i:25680739 original size:15 final size:15
Alignment explanation
Indices: 25680719--25680754 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
25680709 CATTTGGATT
* *
25680719 ATCATTGATACCATG
1 ATCATTGAGACCAGG
25680734 ATCATTGAGACCAGG
1 ATCATTGAGACCAGG
25680749 ATCATT
1 ATCATT
25680755 CCCTTCCCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (15 bp):
ATCATTGAGACCAGG
Found at i:25683562 original size:47 final size:47
Alignment explanation
Indices: 25683508--25683621 Score: 144
Period size: 47 Copynumber: 2.4 Consensus size: 47
25683498 AATGTGGAAG
* * *
25683508 TTATTGGCAGTTTATCTGCAATTGTT-GTGGTTTGTCCACGATTTTGA
1 TTATTGGCAGTTTATCTACAATT-TTGGTGGCTTGTCCACAATTTTGA
*
25683555 TTATTGGCA-TTATATCTACGATTTTGGTGGCTTGTCCACAATTTTGA
1 TTATTGGCAGTT-TATCTACAATTTTGGTGGCTTGTCCACAATTTTGA
25683602 TTATTGG-AGATTTATCTACA
1 TTATTGGCAG-TTTATCTACA
25683622 TTACTGTAAC
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
46 5 0.09
47 51 0.88
48 2 0.03
ACGTcount: A:0.21, C:0.13, G:0.20, T:0.46
Consensus pattern (47 bp):
TTATTGGCAGTTTATCTACAATTTTGGTGGCTTGTCCACAATTTTGA
Found at i:25691690 original size:26 final size:26
Alignment explanation
Indices: 25691631--25691692 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
25691621 TACCTACAGT
*
25691631 AGTTTCAAAATATCATAACATATATC
1 AGTTTCAGAATATCATAACATATATC
* *
25691657 AGTTTCAGAATATCATAGCATGTATC
1 AGTTTCAGAATATCATAACATATATC
25691683 AGTTTCAGAA
1 AGTTTCAGAA
25691693 CACTTACAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (26 bp):
AGTTTCAGAATATCATAACATATATC
Found at i:25691776 original size:14 final size:14
Alignment explanation
Indices: 25691742--25691782 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
25691732 ACTAAGTAGA
*
25691742 AATATTTCAAAACT
1 AATATTTCAAAACC
25691756 AATATTTCAAAGACC
1 AATATTTCAAA-ACC
25691771 AA-ATTT-AAAACC
1 AATATTTCAAAACC
25691783 CATAATCCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 3 0.12
13 3 0.12
14 15 0.60
15 4 0.16
ACGTcount: A:0.51, C:0.17, G:0.02, T:0.29
Consensus pattern (14 bp):
AATATTTCAAAACC
Found at i:25697926 original size:53 final size:52
Alignment explanation
Indices: 25697843--25698054 Score: 171
Period size: 53 Copynumber: 4.0 Consensus size: 52
25697833 CCTCGATGGG
** * * *
25697843 AAAATTACTGAAATACCCTCAAAGGATAAATTATTGAAATACCCCAAAAGGGTA
1 AAAATTACACAAATACCCT-AGAGGGTAAATTACTGAAATACCCC-AAAGGGTA
* * * *
25697897 AAAATTAC-CAAATACCCCTAGAGGGTAAATTATTGAAATACCTTCGATGGGT-
1 AAAATTACACAAATA-CCCTAGAGGGTAAATTACTGAAATACC-CCAAAGGGTA
* * *
25697949 -AAATTACAAAAATACCCTCGATGGGAAAATTACTGAAATACCCTCAAAGGGTA
1 AAAATTACACAAATACCCTAGA-GGGTAAATTACTGAAATACCC-CAAAGGGTA
* * ** *
25698002 AAATTTAC-CTGAATACCCCGGAGGGTAAATTACTGAAATACCCTCGAAGGGTA
1 AAAATTACAC-AAATACCCTAGAGGGTAAATTACTGAAATACCC-CAAAGGGTA
25698055 GAATGATCGT
Statistics
Matches: 130, Mismatches: 20, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
51 13 0.10
52 29 0.22
53 60 0.46
54 28 0.22
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (52 bp):
AAAATTACACAAATACCCTAGAGGGTAAATTACTGAAATACCCCAAAGGGTA
Found at i:25697998 original size:105 final size:105
Alignment explanation
Indices: 25697814--25698054 Score: 301
Period size: 105 Copynumber: 2.3 Consensus size: 105
25697804 AGGCCGTATT
* * ** *
25697814 GGGTAAATTTAC-AAAATACCCTCGATGGGAAAATTACTGAAATACCCTCAAAGGATAAATTATT
1 GGGTAAA-TTACTGAAATACCCTCGATGGGTAAATTACAAAAATACCCTCAAAGGATAAATTACT
25697878 GAAATACCCCAAAAGGGTAAAAATTACC-AAATACCCCTAGA
65 GAAATACCCCAAAAGGGTAAAAATTACCTAAATACCCC-AGA
* * **
25697919 GGGTAAATTATTGAAATACCTTCGATGGGTAAATTACAAAAATACCCTCGATGGGA-AAATTACT
1 GGGTAAATTACTGAAATACCCTCGATGGGTAAATTACAAAAATACCCTC-AAAGGATAAATTACT
* * *
25697983 GAAATACCCTC-AAAGGGTAAAATTTACCTGAATACCCCGGA
65 GAAATACCC-CAAAAGGGTAAAAATTACCTAAATACCCCAGA
*
25698024 GGGTAAATTACTGAAATACCCTCGAAGGGTA
1 GGGTAAATTACTGAAATACCCTCGATGGGTA
25698055 GAATGATCGT
Statistics
Matches: 117, Mismatches: 15, Indels: 8
0.84 0.11 0.06
Matches are distributed among these distances:
104 3 0.03
105 101 0.86
106 13 0.11
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.23
Consensus pattern (105 bp):
GGGTAAATTACTGAAATACCCTCGATGGGTAAATTACAAAAATACCCTCAAAGGATAAATTACTG
AAATACCCCAAAAGGGTAAAAATTACCTAAATACCCCAGA
Found at i:25698053 original size:26 final size:26
Alignment explanation
Indices: 25697814--25698054 Score: 206
Period size: 26 Copynumber: 9.2 Consensus size: 26
25697804 AGGCCGTATT
* *
25697814 GGGTAAATTTAC-AAAATACCCTCGAT
1 GGGTAAA-TTACTGAAATACCCTCGAA
* *
25697840 GGGAAAATTACTGAAATACCCTCAAA
1 GGGTAAATTACTGAAATACCCTCGAA
* * *
25697866 GGATAAATTATTGAAATACCC-CAAAA
1 GGGTAAATTACTGAAATACCCTC-GAA
* *
25697892 GGGTAAAAATTAC-CAAATACCC-CTAGA
1 GGGT--AAATTACTGAAATACCCTCGA-A
* * *
25697919 GGGTAAATTATTGAAATACCTTCGAT
1 GGGTAAATTACTGAAATACCCTCGAA
** *
25697945 GGGTAAATTACAAAAATACCCTCGAT
1 GGGTAAATTACTGAAATACCCTCGAA
* *
25697971 GGGAAAATTACTGAAATACCCTCAAA
1 GGGTAAATTACTGAAATACCCTCGAA
*
25697997 GGGTAAAATTTACCTG-AATACCC-CGGA
1 GGGT-AAA-TTA-CTGAAATACCCTCGAA
25698024 GGGTAAATTACTGAAATACCCTCGAA
1 GGGTAAATTACTGAAATACCCTCGAA
25698050 GGGTA
1 GGGTA
25698055 GAATGATCGT
Statistics
Matches: 174, Mismatches: 29, Indels: 24
0.77 0.13 0.11
Matches are distributed among these distances:
24 3 0.02
25 21 0.12
26 106 0.61
27 25 0.14
28 16 0.09
29 3 0.02
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.23
Consensus pattern (26 bp):
GGGTAAATTACTGAAATACCCTCGAA
Found at i:25698316 original size:26 final size:26
Alignment explanation
Indices: 25698268--25698317 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
25698258 ACACATACTG
* * *
25698268 TACTGGCAGCTCTGCTACGATATTAT
1 TACTGGCAACTATGCTACAATATTAT
*
25698294 TACTGGCAACTATGCTGCAATATT
1 TACTGGCAACTATGCTACAATATT
25698318 GGTGTGTGGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (26 bp):
TACTGGCAACTATGCTACAATATTAT
Found at i:25698766 original size:21 final size:22
Alignment explanation
Indices: 25698742--25698785 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
25698732 TTCAAATAAG
25698742 TTTTCACAACAAACAC-TATTT
1 TTTTCACAACAAACACATATTT
**
25698763 TTTTCGTAACAAACACATATTT
1 TTTTCACAACAAACACATATTT
25698785 T
1 T
25698786 CAACTTCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.36, C:0.20, G:0.02, T:0.41
Consensus pattern (22 bp):
TTTTCACAACAAACACATATTT
Found at i:25705648 original size:23 final size:23
Alignment explanation
Indices: 25705613--25705660 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
25705603 GGAGCGTCGA
*
25705613 CTGCCTTGCTTCTCTGCATATCT
1 CTGCCTTGCTTCTCTGAATATCT
*
25705636 CTGCCTT-CTTTCTTTGAATATCT
1 CTGCCTTGC-TTCTCTGAATATCT
25705659 CT
1 CT
25705661 TTGGCTGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 21 0.95
ACGTcount: A:0.10, C:0.31, G:0.10, T:0.48
Consensus pattern (23 bp):
CTGCCTTGCTTCTCTGAATATCT
Found at i:25706195 original size:26 final size:26
Alignment explanation
Indices: 25706153--25706333 Score: 152
Period size: 26 Copynumber: 6.9 Consensus size: 26
25706143 TAGGCCGTAT
* *
25706153 TGGGTAAATTA-TCAAAAAACCCTCGA
1 TGGGAAAATTACT-AAAATACCCTCGA
*
25706179 TAGGAAAATTACTAAAATACCCTCAGA
1 TGGGAAAATTACTAAAATACCCTC-GA
* * * *
25706206 -GGGTAAATTATTGAAATACCCTCAA
1 TGGGAAAATTACTAAAATACCCTCGA
* *
25706231 AGGGTAAAAATTACTAAAATACCCCTAGA
1 TGGG--AAAATTACTAAAATA-CCCTCGA
* * * *
25706260 -GGGTAAATTACTGAAATACTCTTGA
1 TGGGAAAATTACTAAAATACCCTCGA
* * *
25706285 TGGGTAAATTACTAAGATACCCTCAA
1 TGGGAAAATTACTAAAATACCCTCGA
25706311 TGGGAAAATTACTAAAATACCCT
1 TGGGAAAATTACTAAAATACCCT
25706334 TAAAGGGTAA
Statistics
Matches: 124, Mismatches: 24, Indels: 14
0.77 0.15 0.09
Matches are distributed among these distances:
25 6 0.05
26 95 0.77
27 3 0.02
28 15 0.12
29 5 0.04
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.25
Consensus pattern (26 bp):
TGGGAAAATTACTAAAATACCCTCGA
Found at i:25706253 original size:54 final size:54
Alignment explanation
Indices: 25706183--25706395 Score: 240
Period size: 54 Copynumber: 4.0 Consensus size: 54
25706173 CCTCGATAGG
*
25706183 AAAATTACTAAAATACCCTCAGAGGGTAAATTATTGAAATACCCTCAAAGGGTA
1 AAAATTACTAAAATACCCTCAGAGGGTAAATTACTGAAATACCCTCAAAGGGTA
* ** *
25706237 AAAATTACTAAAATACCC-CTAGAGGGTAAATTACTGAAATACTCTTGATGGGT-
1 AAAATTACTAAAATACCCTC-AGAGGGTAAATTACTGAAATACCCTCAAAGGGTA
* * * *
25706290 -AAATTACTAAGATACCCTCA-ATGGGAAAATTACTAAAATACCCTTAAAGGGTA
1 AAAATTACTAAAATACCCTCAGA-GGGTAAATTACTGAAATACCCTCAAAGGGTA
* * * *
25706343 AAATTTACCT-GAATACCCT-AGAGGGTATATTACTGAAATACCCTCGAAGGGTA
1 AAAATTA-CTAAAATACCCTCAGAGGGTAAATTACTGAAATACCCTCAAAGGGTA
25706396 GAATGACCGT
Statistics
Matches: 133, Mismatches: 19, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
51 1 0.01
52 42 0.32
53 29 0.22
54 59 0.44
55 2 0.02
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.26
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTCAGAGGGTAAATTACTGAAATACCCTCAAAGGGTA
Found at i:25706339 original size:106 final size:105
Alignment explanation
Indices: 25706184--25706383 Score: 287
Period size: 106 Copynumber: 1.9 Consensus size: 105
25706174 CTCGATAGGA
* * *
25706184 AAATTACTAAAATACCCTCAGAGGGTAAATTATTGAAATACCCTCAAAGGGTAAAAATTA-CTAA
1 AAATTACTAAAATACCCTCAGAGGGAAAATTACTAAAATACCCTCAAAGGGTAAAAATTACCT-A
25706248 AATACCCCTAGAGGGTAAATTACTGAAATACTCTTGATGGGT
65 AATA-CCCTAGAGGGTAAATTACTGAAATACTCTTGATGGGT
* * * *
25706290 AAATTACTAAGATACCCTCA-ATGGGAAAATTACTAAAATACCCTTAAAGGGTAAAATTTACCTG
1 AAATTACTAAAATACCCTCAGA-GGGAAAATTACTAAAATACCCTCAAAGGGTAAAAATTACCTA
*
25706354 AATACCCTAGAGGGTATATTACTGAAATAC
65 AATACCCTAGAGGGTAAATTACTGAAATAC
25706384 CCTCGAAGGG
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
105 26 0.31
106 56 0.67
107 2 0.02
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.27
Consensus pattern (105 bp):
AAATTACTAAAATACCCTCAGAGGGAAAATTACTAAAATACCCTCAAAGGGTAAAAATTACCTAA
ATACCCTAGAGGGTAAATTACTGAAATACTCTTGATGGGT
Found at i:25710155 original size:22 final size:22
Alignment explanation
Indices: 25710112--25710155 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
25710102 AAAAATAATC
* **
25710112 AAAATTAATAAAAATTTGATAT
1 AAAACTAATAAAAATTCAATAT
*
25710134 AAAACTAATTAAAATTCAATAT
1 AAAACTAATAAAAATTCAATAT
25710156 GTTCATAATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (22 bp):
AAAACTAATAAAAATTCAATAT
Found at i:25716097 original size:15 final size:15
Alignment explanation
Indices: 25716073--25716108 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
25716063 TAAGAGAGTT
25716073 GAGA-GAGAGGATGA
1 GAGATGAGAGGATGA
25716087 GAGATGAGAGGATGA
1 GAGATGAGAGGATGA
*
25716102 GGGATGA
1 GAGATGA
25716109 TGAAAAAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.39, C:0.00, G:0.50, T:0.11
Consensus pattern (15 bp):
GAGATGAGAGGATGA
Found at i:25716100 original size:8 final size:8
Alignment explanation
Indices: 25716077--25716108 Score: 50
Period size: 7 Copynumber: 4.2 Consensus size: 8
25716067 AGAGTTGAGA
25716077 GAGAGGAT
1 GAGAGGAT
25716085 GAGA-GAT
1 GAGAGGAT
25716092 GAGAGGAT
1 GAGAGGAT
25716100 GAG-GGAT
1 GAGAGGAT
25716107 GA
1 GA
25716109 TGAAAAAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
7 13 0.57
8 10 0.43
ACGTcount: A:0.38, C:0.00, G:0.50, T:0.12
Consensus pattern (8 bp):
GAGAGGAT
Found at i:25741149 original size:8 final size:8
Alignment explanation
Indices: 25741136--25741172 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
25741126 ACTAATATCT
*
25741136 TTTTATAC
1 TTTTATAA
25741144 TTTTATAA
1 TTTTATAA
25741152 TTTTATAA
1 TTTTATAA
25741160 TTTTATAA
1 TTTTATAA
25741168 TTTTA
1 TTTTA
25741173 ATTTTAATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (8 bp):
TTTTATAA
Found at i:25741522 original size:18 final size:18
Alignment explanation
Indices: 25741499--25741534 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
25741489 TAATTAACTT
25741499 GTAAATATTAAATAATAA
1 GTAAATATTAAATAATAA
25741517 GTAAATATTAAATAATAA
1 GTAAATATTAAATAATAA
25741535 TATTAACGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (18 bp):
GTAAATATTAAATAATAA
Found at i:25741639 original size:16 final size:16
Alignment explanation
Indices: 25741620--25741652 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
25741610 GATAGGTTTG
25741620 CCTATAATCCAAGACC
1 CCTATAATCCAAGACC
25741636 CCTATAATCCAAGACC
1 CCTATAATCCAAGACC
25741652 C
1 C
25741653 ATAAAGGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.39, G:0.06, T:0.18
Consensus pattern (16 bp):
CCTATAATCCAAGACC
Found at i:25745107 original size:17 final size:17
Alignment explanation
Indices: 25745081--25745114 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
25745071 TGAAAAAAAA
*
25745081 TTATATAAAAATTATAT
1 TTATAAAAAAATTATAT
25745098 TTATAAAAAAATTATAT
1 TTATAAAAAAATTATAT
25745115 CAAAATCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TTATAAAAAAATTATAT
Found at i:25746251 original size:51 final size:50
Alignment explanation
Indices: 25746170--25746269 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 50
25746160 TCAATTATTT
25746170 TCTCAATTTCCTCTCAAATTCCTTCCAAATTTCTCTCAAATCCATATTTAA
1 TCTCAATTTCCTCTCAAATTCCTT-CAAATTTCTCTCAAATCCATATTTAA
* * * *
25746221 TCTCAATTTGCTCTCAATTTTCTCTT-AAATTTCTCTTAAATCCCTATTT
1 TCTCAATTTCCTCTCAA-ATTC-CTTCAAATTTCTCTCAAATCCATATTT
25746270 TTAAATAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
51 37 0.86
52 3 0.07
53 3 0.07
ACGTcount: A:0.26, C:0.27, G:0.01, T:0.46
Consensus pattern (50 bp):
TCTCAATTTCCTCTCAAATTCCTTCAAATTTCTCTCAAATCCATATTTAA
Found at i:25748673 original size:15 final size:15
Alignment explanation
Indices: 25748653--25748706 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
25748643 GACAAACCCT
25748653 AAACCCTTAACTTAA
1 AAACCCTTAACTTAA
*
25748668 AAACCC-TAAC--AC
1 AAACCCTTAACTTAA
*
25748680 TAACCCTTAACTTAA
1 AAACCCTTAACTTAA
25748695 AAACCCTCTAAC
1 AAACCCT-TAAC
25748707 CCTAAATCTC
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
12 6 0.19
13 4 0.13
14 4 0.13
15 13 0.42
16 4 0.13
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.22
Consensus pattern (15 bp):
AAACCCTTAACTTAA
Found at i:25748684 original size:27 final size:27
Alignment explanation
Indices: 25748654--25748789 Score: 111
Period size: 22 Copynumber: 4.9 Consensus size: 27
25748644 ACAAACCCTA
25748654 AACCCTTAACTTAAAAACCCTAACACT
1 AACCCTTAACTTAAAAACCCTAACACT
*
25748681 AACCCTTAACTTAAAAACCCTCTAACCCT
1 AACCCTTAACTTAAAAA-CC-CTAACACT
** * *
25748710 AAATCTCTAACCTTAACCCTTAACCCTAAACCCT
1 AACCCT-TAA-CTTAA----AAACCCT-AACACT
25748744 AACCCTTAACTTAAAAACCCT---A--
1 AACCCTTAACTTAAAAACCCTAACACT
25748766 AACCCTTAACTTAAAAACCCTAAC
1 AACCCTTAACTTAAAAACCCTAAC
25748790 CCTTGACTGG
Statistics
Matches: 89, Mismatches: 8, Indels: 26
0.72 0.07 0.21
Matches are distributed among these distances:
22 21 0.24
27 17 0.19
28 8 0.09
29 11 0.12
30 3 0.03
31 5 0.06
32 5 0.06
33 5 0.06
34 12 0.13
35 2 0.02
ACGTcount: A:0.41, C:0.35, G:0.00, T:0.24
Consensus pattern (27 bp):
AACCCTTAACTTAAAAACCCTAACACT
Found at i:25748732 original size:7 final size:7
Alignment explanation
Indices: 25748720--25748753 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
25748710 AAATCTCTAA
25748720 CCTTAAC
1 CCTTAAC
25748727 CCTTAAC
1 CCTTAAC
*
25748734 CCTAAAC
1 CCTTAAC
25748741 CC-TAAC
1 CCTTAAC
25748747 CCTTAAC
1 CCTTAAC
25748754 TTAAAAACCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 5 0.21
7 19 0.79
ACGTcount: A:0.32, C:0.44, G:0.00, T:0.24
Consensus pattern (7 bp):
CCTTAAC
Found at i:25751019 original size:125 final size:126
Alignment explanation
Indices: 25750777--25751343 Score: 777
Period size: 125 Copynumber: 4.5 Consensus size: 126
25750767 CCCTAACATG
* * **
25750777 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATATCATGAATTCTTCTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTGATAAAGCATCCTGC
* *
25750842 TTGAAGCA-TTTTTATAATATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCCAGGAC
66 TTGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCCAGGAC
* * *
25750902 CTACTGTAGCAAAAGCGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCATAAAGCATCTTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTGATAAAGCATCCTGC
* * *
25750967 TTGAAGCATTTTTTATACTATTTGCTCAGAAAGGTCAACTCGAAATTA-TTTTTGCATGAC
66 TTGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCCAGGAC
* * * *
25751027 CTACTATAGCAAAAGCGCGTACACGTGGGCGCAATTTCACAAATTCTTCTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTGATAAAGCATCCTGC
*
25751092 TTGAAGC-GTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCCAGGAC
66 TTGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCCAGGAC
* * * * *
25751152 ATACTGTAGCAAAAGTGCGTCCACGAGGGCAAGATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTGATAAAGCATCCTGC
* * * * *
25751217 TTGAAGCGTGTTTTATACTATTTTCTCAGAAACGTCAACTCGAAATTA-TTTTTGCAGAAC
66 TTGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCCAGGAC
* * * * * *
25751277 CTACTGTAACAAAAGCTCGTACACGTGGG-A-GTTACTTCAGAAATTCTTCTGATAAAGCATTCT
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACG--ATTTCACAAATTCTTCTGATAAAGCATCCT
25751340 GCTT
64 GCTT
25751344 TGATTTTATC
Statistics
Matches: 390, Mismatches: 47, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
123 1 0.00
124 39 0.10
125 277 0.71
126 73 0.19
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (126 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTGATAAAGCATCCTGC
TTGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCCAGGAC
Found at i:25751233 original size:250 final size:250
Alignment explanation
Indices: 25750777--25751343 Score: 893
Period size: 250 Copynumber: 2.3 Consensus size: 250
25750767 CCCTAACATG
* * * **
25750777 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATATCATGAATTCTTCTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTACACGTGGGCGCAATTTCACAAATTCTTCTGATAAAGCATCCTGC
*
25750842 TTGAAGCATTTTTATAATATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCCAGGACCTACT
66 TTGAAGCATTTTTATAATATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCCAGGACATACT
* *
25750907 GTAGCAAAAGCGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCATAAAGCATCTTGCTTGAA
131 GTAGCAAAAGCGCGTCCACGAGGGCAAGATTTCACAAATTCTTCTCATAAAGCATCCTGCTTGAA
* *
25750972 GCATTTTTTATACTATTTGCTCAGAAAGGTCAACTCGAAATTATTTTTGCATG-AC
196 GCATGTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTGCA-GAAC
*
25751027 CTACTATAGCAAAAGCGCGTACACGTGGGCGCAATTTCACAAATTCTTCTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTACACGTGGGCGCAATTTCACAAATTCTTCTGATAAAGCATCCTGC
* * *
25751092 TTGAAGCGTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCCAGGACATACT
66 TTGAAGCATTTTTATAATATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCCAGGACATACT
*
25751157 GTAGCAAAAGTGCGTCCACGAGGGCAAGATTTCACAAATTCTTCTCATAAAGCATCCTGCTTGAA
131 GTAGCAAAAGCGCGTCCACGAGGGCAAGATTTCACAAATTCTTCTCATAAAGCATCCTGCTTGAA
* *
25751222 GCGTGTTTTATACTATTTTCTCAGAAACGTCAACTCGAAATTATTTTTGCAGAAC
196 GCATGTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTGCAGAAC
* * * ** * * *
25751277 CTACTGTAACAAAAGCTCGTACACGTGGGAGTTACTTCAGAAATTCTTCTGATAAAGCATTCTGC
1 CTACTGTAGCAAAAGCGCGTACACGTGGGCGCAATTTCACAAATTCTTCTGATAAAGCATCCTGC
25751342 TT
66 TT
25751344 TGATTTTATC
Statistics
Matches: 290, Mismatches: 26, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
249 1 0.00
250 289 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (250 bp):
CTACTGTAGCAAAAGCGCGTACACGTGGGCGCAATTTCACAAATTCTTCTGATAAAGCATCCTGC
TTGAAGCATTTTTATAATATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCCAGGACATACT
GTAGCAAAAGCGCGTCCACGAGGGCAAGATTTCACAAATTCTTCTCATAAAGCATCCTGCTTGAA
GCATGTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTGCAGAAC
Found at i:25753930 original size:24 final size:24
Alignment explanation
Indices: 25753874--25753919 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
25753864 ATTTTACATC
*
25753874 AATAAAATTACCACAAATTTTTAA
1 AATAAAATTAACACAAATTTTTAA
25753898 AATAAAATTAACACAAATTTTT
1 AATAAAATTAACACAAATTTTT
25753920 TATGTCAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.35
Consensus pattern (24 bp):
AATAAAATTAACACAAATTTTTAA
Found at i:25755138 original size:26 final size:25
Alignment explanation
Indices: 25755108--25755157 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 25
25755098 TATACTTAGA
25755108 TTAGTT-TTAGTTTAATTTAATTAACC
1 TTAGTTATTAG-TTAA-TTAATTAACC
25755134 TTAGTTAGTTAGTTAATTAATTAA
1 TTAGTTA-TTAGTTAATTAATTAA
25755158 GGCATAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 14 0.64
27 4 0.18
28 4 0.18
ACGTcount: A:0.34, C:0.04, G:0.10, T:0.52
Consensus pattern (25 bp):
TTAGTTATTAGTTAATTAATTAACC
Found at i:25755852 original size:34 final size:35
Alignment explanation
Indices: 25755797--25755863 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
25755787 CAAACACTAG
*
25755797 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
25755832 AAAACATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
25755864 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:25756276 original size:6 final size:6
Alignment explanation
Indices: 25756261--25756350 Score: 135
Period size: 6 Copynumber: 15.0 Consensus size: 6
25756251 AGTACCATTG
* * * *
25756261 ACATAT ACATAA ACATAC ACATAC ACATAT ACATAT ACATAC ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
25756309 ACATAT ACATAT ACATAT ACATAC ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
25756351 TTCAAACGTA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 77 1.00
ACGTcount: A:0.51, C:0.21, G:0.00, T:0.28
Consensus pattern (6 bp):
ACATAT
Found at i:25760864 original size:30 final size:29
Alignment explanation
Indices: 25760828--25760893 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 29
25760818 ACAATTCAAC
*
25760828 CTAAATT-TTGAAATATGAAAAGTAT-AGAGA
1 CTAAATTCCTGAAA-AT-AAAAGTATAAG-GA
*
25760858 CTAAATTCCTGAAAATAGAAGTATAAGGA
1 CTAAATTCCTGAAAATAAAAGTATAAGGA
25760887 CTAAATT
1 CTAAATT
25760894 ACTAATTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 16 0.50
30 11 0.34
31 5 0.16
ACGTcount: A:0.48, C:0.08, G:0.15, T:0.29
Consensus pattern (29 bp):
CTAAATTCCTGAAAATAAAAGTATAAGGA
Found at i:25765077 original size:16 final size:16
Alignment explanation
Indices: 25765056--25765102 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
25765046 ATATTTAAAC
25765056 ATATAATAAATTATTA
1 ATATAATAAATTATTA
**
25765072 ATATAATTTATTATT-
1 ATATAATAAATTATTA
*
25765087 -TTTAATAAATTATTA
1 ATATAATAAATTATTA
25765102 A
1 A
25765103 ATATTTAAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
14 11 0.46
16 13 0.54
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATAATAAATTATTA
Found at i:25765096 original size:79 final size:75
Alignment explanation
Indices: 25764957--25765103 Score: 170
Period size: 79 Copynumber: 1.9 Consensus size: 75
25764947 TTGATAATAA
* * * *
25764957 ATTTTATTTTTATTTTTAAAAATATTTAAAATATTAATATAAAATATTATATTTTTTAAATCTTA
1 ATTTAATTTTTATATTTAAAAATATATAAAATATTAATATAAAATATTATATTTTATAAA--TTA
25765022 TTAAACATACGT
64 TTAAACATACGT
* * **
25765034 ATTTAATTGTTTATATTTAAACATATAATAAATTATTAATATAATTTATTAT-TTTTAATAAATT
1 ATTTAATT-TTTATATTTAAAAATAT-ATAAAATATTAATATAAAATATTATATTTT-ATAAATT
25765098 ATTAAA
63 ATTAAA
25765104 TATTTAAATT
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
77 15 0.25
78 19 0.32
79 25 0.42
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (75 bp):
ATTTAATTTTTATATTTAAAAATATATAAAATATTAATATAAAATATTATATTTTATAAATTATT
AAACATACGT
Found at i:25765332 original size:15 final size:15
Alignment explanation
Indices: 25765314--25765346 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
25765304 GTTTCTGTAC
25765314 TTTTATTTTCAAGAA
1 TTTTATTTTCAAGAA
25765329 TTTTATTTTCAAGAA
1 TTTTATTTTCAAGAA
25765344 TTT
1 TTT
25765347 AGTCCCTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (15 bp):
TTTTATTTTCAAGAA
Found at i:25765869 original size:17 final size:20
Alignment explanation
Indices: 25765832--25765879 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 20
25765822 ATTAGTTGAA
25765832 TTAATATTTTAATATATATT
1 TTAATATTTTAATATATATT
25765852 TTAAT-TTTT-ATA-ATATT
1 TTAATATTTTAATATATATT
*
25765869 TTAATAATTTA
1 TTAATATTTTA
25765880 TTCAATTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 10 0.40
18 6 0.24
19 4 0.16
20 5 0.20
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TTAATATTTTAATATATATT
Found at i:25770707 original size:24 final size:24
Alignment explanation
Indices: 25770675--25770723 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
25770665 AACGGGTATG
25770675 TAGCTATTCTATCAATTGAGGAGC
1 TAGCTATTCTATCAATTGAGGAGC
25770699 TAGCTATTCTATCAATTGAGGAGC
1 TAGCTATTCTATCAATTGAGGAGC
25770723 T
1 T
25770724 GACTCTGTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (24 bp):
TAGCTATTCTATCAATTGAGGAGC
Found at i:25774611 original size:17 final size:18
Alignment explanation
Indices: 25774589--25774625 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
25774579 AGGCCAATTT
25774589 GGGCGTATGGG-CCACAC
1 GGGCGTATGGGCCCACAC
*
25774606 GGGCGTTTGGGCCCACAC
1 GGGCGTATGGGCCCACAC
25774624 GG
1 GG
25774626 ACATGTGGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.14, C:0.30, G:0.43, T:0.14
Consensus pattern (18 bp):
GGGCGTATGGGCCCACAC
Found at i:25778367 original size:150 final size:150
Alignment explanation
Indices: 25778145--25778445 Score: 566
Period size: 150 Copynumber: 2.0 Consensus size: 150
25778135 CAACTTATTG
25778145 TGGTGGTATATGCGTTTGGTATATGAAATGATACATACCTAGTTGTAATTTAAGAGATCGAATGT
1 TGGTGGTATATGCGTTTGGTATATGAAATGATACATACCTAGTTGTAATTTAAGAGATCGAATGT
25778210 CATATATTTGATAGCTATATGGTTTAAATCTTGTAAATATGAGACATGTGTAAATTGGTTTTGTT
66 CATATATTTGATAGCTATATGGTTTAAATCTTGTAAATATGAGACATGTGTAAATTGGTTTTGTT
*
25778275 GTATAACAACTTAGTTCGAA
131 GTATAAAAACTTAGTTCGAA
*
25778295 TGGTGGTATATGCGTTTGGTATATGAAATGATACATACCTAGTTTTAATTTAAGAGATCGAATGT
1 TGGTGGTATATGCGTTTGGTATATGAAATGATACATACCTAGTTGTAATTTAAGAGATCGAATGT
* *
25778360 CATATATTTGATAGCTGTATGGTTTAAATTTTGTAAATATGAGACATGTGTAAATTGGTTTTGTT
66 CATATATTTGATAGCTATATGGTTTAAATCTTGTAAATATGAGACATGTGTAAATTGGTTTTGTT
25778425 GTATAAAAACTTAGTTCGAA
131 GTATAAAAACTTAGTTCGAA
25778445 T
1 T
25778446 ATTTGGAATA
Statistics
Matches: 147, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
150 147 1.00
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.40
Consensus pattern (150 bp):
TGGTGGTATATGCGTTTGGTATATGAAATGATACATACCTAGTTGTAATTTAAGAGATCGAATGT
CATATATTTGATAGCTATATGGTTTAAATCTTGTAAATATGAGACATGTGTAAATTGGTTTTGTT
GTATAAAAACTTAGTTCGAA
Found at i:25784485 original size:14 final size:14
Alignment explanation
Indices: 25784466--25784498 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
25784456 AAGCCCAAAA
25784466 CCAAATTCAGTGGC
1 CCAAATTCAGTGGC
25784480 CCAAATTCAGTGGC
1 CCAAATTCAGTGGC
25784494 CCAAA
1 CCAAA
25784499 CAAACATGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.18
Consensus pattern (14 bp):
CCAAATTCAGTGGC
Found at i:25786009 original size:12 final size:12
Alignment explanation
Indices: 25785994--25786018 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25785984 ATTTGTGCTT
25785994 TCATTTATATTA
1 TCATTTATATTA
25786006 TCATTTATATTA
1 TCATTTATATTA
25786018 T
1 T
25786019 GTTGCTCGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (12 bp):
TCATTTATATTA
Found at i:25786407 original size:98 final size:98
Alignment explanation
Indices: 25786283--25786472 Score: 326
Period size: 98 Copynumber: 1.9 Consensus size: 98
25786273 AATCATGAAG
* *
25786283 GAAATATTTCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTTAAA
1 GAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTTAAA
25786348 TCTTGGATAAGTGGATGTTCTTTTAAATTAAAA
66 TCTTGGATAAGTGGATGTTCTTTTAAATTAAAA
* * *
25786381 GAAATATTCCGAGTTTGGGATTCTAAAGGGATCGTGCCCTAACGTATTGGGTGTGGTTTCTTAAA
1 GAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTTAAA
*
25786446 TCTTGGATGAGTGGATGTTCTTTTAAA
66 TCTTGGATAAGTGGATGTTCTTTTAAA
25786473 ATTTTTATAT
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 86 1.00
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.38
Consensus pattern (98 bp):
GAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTTAAA
TCTTGGATAAGTGGATGTTCTTTTAAATTAAAA
Found at i:25797819 original size:44 final size:43
Alignment explanation
Indices: 25797744--25798230 Score: 260
Period size: 44 Copynumber: 11.1 Consensus size: 43
25797734 CCAAGCCTTG
* * * *
25797744 TCTCCCTAAGCAGTAGCGGAGGAGGTTGAAGATTATAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTA-AGATCTTA
* ***
25797788 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTAAG-ATCTTA
* * * * *
25797832 TCTTTCC-AAG-A-TAGTGGGAAGTAGATTTAAGCCACTAAG-CCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAG--ACTAAGATCTTA
* * *
25797876 TCTCCCTAAGCAGTAGTGGAGGAGGTTGAAGATTATAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTA-AGATCTTA
* * * *
25797920 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGACGAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTAAG-ATCTTA
* * * * * *
25797964 TCTTTCC-AAG-A-TAGTGGGAAGTAGATTTAAGCCACCAAG-CCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAG--ACTAAGATCTTA
* * * * *
25798008 TCTCCCTAAGTAGTAGCGGAGAAGGTTGAAGATTATAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTA-AGATCTTA
* * * *
25798052 TCTCCCTAAGAAGTAGTGGAGCAGATCGAAGACGACGAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTAAG-ATCTTA
* * * * *
25798096 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAG-CCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAG--ACTAAGATCTTA
* * *
25798140 TCTCCCTAAGCAGTAGTGGAGGAGGTTGAAGATTATAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTA-AGATCTTA
* * * *
25798184 TCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGACGAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTAAG-ATCTTA
25798228 TCT
1 TCT
25798231 TTCCAAGATA
Statistics
Matches: 331, Mismatches: 78, Indels: 68
0.69 0.16 0.14
Matches are distributed among these distances:
42 19 0.06
43 28 0.08
44 244 0.74
45 18 0.05
46 22 0.07
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.26
Consensus pattern (43 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTAAGATCTTA
Done.