Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 89 of 218
Found at i:25797907 original size:132 final size:132
Alignment explanation
Indices: 25797670--25798259 Score: 1054
Period size: 132 Copynumber: 4.5 Consensus size: 132
25797660 CTGCATTGAC
* *
25797670 AGTGGAGCAGATCGAAAACGACGAATCTTATCTTTCCAAGATAGTGGGAAACAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
25797735 CAAGCCTTGTCTCCCTAAGCAGTAGCGGAGGAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTAAGCAGTAGCGGAGGAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
25797800 GT
131 GT
* *
25797802 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
25797867 TAAGCCTTGTCTCCCTAAGCAGTAGTGGAGGAGGTTGAAGATTATAGATCTTATCTCCCTAAGTA
66 CAAGCCTTGTCTCCCTAAGCAGTAGCGGAGGAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
25797932 GT
131 GT
*
25797934 AGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
25797999 CAAGCCTTGTCTCCCTAAGTAGTAGCGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGAA
66 CAAGCCTTGTCTCCCTAAGCAGTAGCGGAGGAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
25798064 GT
131 GT
25798066 AGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
25798131 CAAGCCTTGTCTCCCTAAGCAGTAGTGGAGGAGGTTGAAGATTATAGATCTTATCTCCCTAAACA
66 CAAGCCTTGTCTCCCTAAGCAGTAGCGGAGGAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
25798196 GT
131 GT
*
25798198 AGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTAAAGC
1 AGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
25798260 TGACAATCCT
Statistics
Matches: 438, Mismatches: 20, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 438 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTAAGCAGTAGCGGAGGAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
GT
Found at i:25798603 original size:14 final size:14
Alignment explanation
Indices: 25798584--25798630 Score: 94
Period size: 14 Copynumber: 3.4 Consensus size: 14
25798574 AAGCCCAAAA
25798584 CCAAATTCAGTGGC
1 CCAAATTCAGTGGC
25798598 CCAAATTCAGTGGC
1 CCAAATTCAGTGGC
25798612 CCAAATTCAGTGGC
1 CCAAATTCAGTGGC
25798626 CCAAA
1 CCAAA
25798631 CAAACATGGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.19
Consensus pattern (14 bp):
CCAAATTCAGTGGC
Found at i:25798971 original size:18 final size:16
Alignment explanation
Indices: 25798925--25798975 Score: 68
Period size: 15 Copynumber: 3.1 Consensus size: 16
25798915 ATATTTGCGT
*
25798925 TTCTATTTGTTT-TTA
1 TTCTATTTTTTTATTA
25798940 TTCTATTTTTTTATTA
1 TTCTATTTTTTTATTA
25798956 TATCTATTTATTTTATTA
1 T-TCTATTT-TTTTATTA
25798974 TT
1 TT
25798976 TTTATAAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
15 11 0.34
16 4 0.12
17 8 0.25
18 9 0.28
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.73
Consensus pattern (16 bp):
TTCTATTTTTTTATTA
Found at i:25800127 original size:12 final size:12
Alignment explanation
Indices: 25800112--25800136 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25800102 ATTTGTGCTT
25800112 TCATTTATATTA
1 TCATTTATATTA
25800124 TCATTTATATTA
1 TCATTTATATTA
25800136 T
1 T
25800137 GTTGCTCGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (12 bp):
TCATTTATATTA
Found at i:25800523 original size:98 final size:98
Alignment explanation
Indices: 25800401--25800590 Score: 319
Period size: 98 Copynumber: 1.9 Consensus size: 98
25800391 AATCATGAAG
* *
25800401 GAAATATTCCGTGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTTAAA
1 GAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTTAAA
25800466 TCTTGGATAAGTGGATGTTCTTTTAAATTAAAA
66 TCTTGGATAAGTGGATGTTCTTTTAAATTAAAA
* *
25800499 GAAATATTCCGAGTTT-AGGATTCTAAAGGGATCGTGCCCTAACGTATTGGGTGTGGTTTCTTAA
1 GAAATATTCCGAGTTTGA-GATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTTAA
*
25800563 ATCTTGGATGAGTGGATGTTCTTTTAAA
65 ATCTTGGATAAGTGGATGTTCTTTTAAA
25800591 ATTTTTATAT
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
97 1 0.01
98 85 0.99
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.38
Consensus pattern (98 bp):
GAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTTAAA
TCTTGGATAAGTGGATGTTCTTTTAAATTAAAA
Found at i:25811018 original size:195 final size:185
Alignment explanation
Indices: 25810603--25811041 Score: 483
Period size: 195 Copynumber: 2.3 Consensus size: 185
25810593 TGAGTAAAGG
* ** *
25810603 ATTTGATCTTGCTCATGATTCCACTATGTGGTGAAATTGAGTTG-GACCACCATTT-CAATGTAT
1 ATTTGATCTCGCTCACCATTCCACTATGTGGTGAAATTGAGTTGTG-CCACCATTTGCAATATAT
* * * * *
25810666 GAATTTATTTAATTATGGTATTTATTTTTTTAAAATTTATTATATATAATGAATGTTTGATGTTT
65 GAATTTATATAATTATGATATTTATTTTTTAAAAATTTATTATATATAATGAATATTTGATATTT
* * * * * *
25810731 AATATGAATTTATCATGATTTTTTAATTGTTATGGTATTTTATAGTGAGGGTGAAGG
130 AATATGAATTTATCATAATTTTTTAA-TATTATGATATTTTAAACTGAGGGTGAAGA
* * *
25810788 ATTTGATCTCTCTTATCATTCCACTATGTGGTGAAATTGAGTTGTGCCACCATTTGCAATATATG
1 ATTTGATCTCGCTCACCATTCCACTATGTGGTGAAATTGAGTTGTGCCACCATTTGCAATATATG
*
25810853 ATATTT-TATAATTATGATATTTTATTTTTTAAAAATTTATTACATATGATGAATATTTAATATT
66 A-ATTTATATAATTATGATA-TTTATTTTTTAAAAATTTATT--ATAT-AT--A-A-TGAATATT
*
25810917 TTATAAAATTTAATATGAATTTATCATAATTTTTTAA-ATTATGATATTTTAAACTGAGGGTGAA
122 TGAT---ATTTAATATGAATTTATCATAATTTTTTAATATTATGATATTTTAAACTGAGGGTGAA
25810981 GA
184 GA
* * * * *
25810983 ATTTGAT-TGCGCTCACCATTCTATTATGCGGTGAAATTGAGTTGTACCACAATTTGCAA
1 ATTTGATCT-CGCTCACCATTCCACTATGTGGTGAAATTGAGTTGTGCCACCATTTGCAA
25811042 GGTAAGACAT
Statistics
Matches: 213, Mismatches: 26, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
185 49 0.23
186 21 0.10
187 24 0.11
189 4 0.02
190 2 0.01
192 1 0.00
193 1 0.00
194 10 0.05
195 73 0.34
197 28 0.13
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (185 bp):
ATTTGATCTCGCTCACCATTCCACTATGTGGTGAAATTGAGTTGTGCCACCATTTGCAATATATG
AATTTATATAATTATGATATTTATTTTTTAAAAATTTATTATATATAATGAATATTTGATATTTA
ATATGAATTTATCATAATTTTTTAATATTATGATATTTTAAACTGAGGGTGAAGA
Found at i:25818368 original size:27 final size:27
Alignment explanation
Indices: 25818276--25818369 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 27
25818266 ATCTGCCACG
* * * *
25818276 AAGGCTTCTATTTCTTA-AATCACTACA
1 AAGGCTTCCATCTCTTAGAA-CACCATA
* * * * *
25818303 AAGGTTTCCATATCTTGGATCGCCATA
1 AAGGCTTCCATCTCTTAGAACACCATA
25818330 AAGGCTTCCATCTCTTAGAACACCATA
1 AAGGCTTCCATCTCTTAGAACACCATA
25818357 AAGGCTTCCATCT
1 AAGGCTTCCATCT
25818370 TTGGCGTGTT
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.32
Consensus pattern (27 bp):
AAGGCTTCCATCTCTTAGAACACCATA
Found at i:25822145 original size:26 final size:26
Alignment explanation
Indices: 25822116--25822165 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
25822106 GCTTTTTACA
25822116 ATTTTACCCTTGATAAAATTTTGATG
1 ATTTTACCCTTGATAAAATTTTGATG
* *
25822142 ATTTTGCCCTTGGTAAAATTTTGA
1 ATTTTACCCTTGATAAAATTTTGA
25822166 GAAAATAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.46
Consensus pattern (26 bp):
ATTTTACCCTTGATAAAATTTTGATG
Found at i:25824541 original size:20 final size:20
Alignment explanation
Indices: 25824499--25824556 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
25824489 AACCCAATAG
**
25824499 GTATTGATATTTTTAGATGA
1 GTATTGATATTTTTAGAAAA
*
25824519 GTATTGATATTTTTATAAAA
1 GTATTGATATTTTTAGAAAA
* *
25824539 GTATGGATAATTTT-GAAA
1 GTATTGATATTTTTAGAAA
25824557 TGGTATCGAT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 3 0.09
20 29 0.91
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (20 bp):
GTATTGATATTTTTAGAAAA
Found at i:25831568 original size:16 final size:16
Alignment explanation
Indices: 25831547--25831593 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
25831537 TTATAGATTA
*
25831547 TTGGAAGCTTGATCGG
1 TTGGAAGCTCGATCGG
25831563 TTGGAAGCTCGATCGG
1 TTGGAAGCTCGATCGG
*
25831579 TTGGAATCTCG-TCGG
1 TTGGAAGCTCGATCGG
25831594 AGACCTATGA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
15 4 0.14
16 25 0.86
ACGTcount: A:0.17, C:0.17, G:0.36, T:0.30
Consensus pattern (16 bp):
TTGGAAGCTCGATCGG
Found at i:25832017 original size:21 final size:20
Alignment explanation
Indices: 25831992--25832032 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
25831982 TCGAAATGAC
*
25831992 ATGTTTATATGCATTTGAATG
1 ATGTTTAAAT-CATTTGAATG
*
25832013 ATGTTTAAATCCTTTGAATG
1 ATGTTTAAATCATTTGAATG
25832033 TGTACCCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.29, C:0.07, G:0.17, T:0.46
Consensus pattern (20 bp):
ATGTTTAAATCATTTGAATG
Found at i:25849426 original size:23 final size:22
Alignment explanation
Indices: 25849383--25849428 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
25849373 ATTTTATTCA
*
25849383 ACTTTAACTTTTATTCAAAAAC
1 ACTTTAACTTTTATACAAAAAC
* *
25849405 ACTTTAATTTGTTATACCAAAAC
1 ACTTTAACTT-TTATACAAAAAC
25849428 A
1 A
25849429 TATTATTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.39
Consensus pattern (22 bp):
ACTTTAACTTTTATACAAAAAC
Found at i:25855897 original size:76 final size:76
Alignment explanation
Indices: 25855767--25855907 Score: 176
Period size: 76 Copynumber: 1.9 Consensus size: 76
25855757 AATGAGTGCT
* * *** * *
25855767 TGATATCATTGGTTTATTCGACTAGCGTTGGGCGCAAATCTTTGTTGGTATATCCAACTAGTGCT
1 TGATATCATTGGTTTATCCAACTAGAACTGGGCGCAAATCATTGTTGATATATCCAACTAGTGCT
25855832 AGGCACACATC
66 AGGCACACATC
* * *
25855843 TGATATCATTGGTTTATCCAACTAGAACTGGGTGCAAATCATTGTCT-ATTTATCCGACTAGTGC
1 TGATATCATTGGTTTATCCAACTAGAACTGGGCGCAAATCATTGT-TGATATATCCAACTAGTGC
25855907 T
65 T
25855908 GGGCGTAACT
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
76 53 0.98
77 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (76 bp):
TGATATCATTGGTTTATCCAACTAGAACTGGGCGCAAATCATTGTTGATATATCCAACTAGTGCT
AGGCACACATC
Found at i:25855940 original size:36 final size:36
Alignment explanation
Indices: 25855777--25855943 Score: 109
Period size: 36 Copynumber: 4.5 Consensus size: 36
25855767 TGATATCATT
* * * * * *
25855777 GGTTTATTCGACTAGCGTTGGGCGCAAATCTTTGTT
1 GGTTTATCCAACTAGTGCTGGGCGCAAATCATTGTC
* * * * * *
25855813 GGTATATCCAACTAGTGCTAGGCACACATCTGATATCATT
1 GGTTTATCCAACTAGTGCTGGGCGCAAATC--AT-T-GTC
** *
25855853 GGTTTATCCAACTAGAACTGGGTGCAAATCATTGTC
1 GGTTTATCCAACTAGTGCTGGGCGCAAATCATTGTC
** * * *
25855889 TATTTATCCGACTAGTGCTGGGCGTAACTCATTGTC
1 GGTTTATCCAACTAGTGCTGGGCGCAAATCATTGTC
*
25855925 GGTTTATCCTACTAGTGCT
1 GGTTTATCCAACTAGTGCT
25855944 AGGCACACAT
Statistics
Matches: 97, Mismatches: 30, Indels: 8
0.72 0.22 0.06
Matches are distributed among these distances:
36 67 0.69
37 1 0.01
38 3 0.03
39 1 0.01
40 25 0.26
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (36 bp):
GGTTTATCCAACTAGTGCTGGGCGCAAATCATTGTC
Found at i:25855986 original size:112 final size:112
Alignment explanation
Indices: 25855779--25855992 Score: 266
Period size: 112 Copynumber: 1.9 Consensus size: 112
25855769 ATATCATTGG
* * * *
25855779 TTTATTCGACTAGCGTTGGGCGCAAATCTTTGTTGGTATATCCAACTAGTGCTAGGCACACATCT
1 TTTATCCGACTAGCGCTGGGCGCAAATCATTGTCGGTATATCCAACTAGTGCTAGGCACACATCT
* * *
25855844 GATATCATTGGTTTATCCAACTAGAACTGGGTGCAAATCATTGTCTA
66 GATACCATCGGTTTATCCAACTAGAACTGGGTACAAATCATTGTCTA
* * * * * *
25855891 TTTATCCGACTAGTGCTGGGCGTAACTCATTGTCGGTTTATCCTACTAGTGCTAGGCACACATTT
1 TTTATCCGACTAGCGCTGGGCGCAAATCATTGTCGGTATATCCAACTAGTGCTAGGCACACATCT
* ** **
25855956 GATACCGTCGGTTTATCTGACTAGCGCTGGGTACAAA
66 GATACCATCGGTTTATCCAACTAGAACTGGGTACAAA
25855993 ACTTTGTTAC
Statistics
Matches: 84, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
112 84 1.00
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (112 bp):
TTTATCCGACTAGCGCTGGGCGCAAATCATTGTCGGTATATCCAACTAGTGCTAGGCACACATCT
GATACCATCGGTTTATCCAACTAGAACTGGGTACAAATCATTGTCTA
Found at i:25860352 original size:6 final size:6
Alignment explanation
Indices: 25860275--25860351 Score: 147
Period size: 6 Copynumber: 13.0 Consensus size: 6
25860265 AAAACAATTC
25860275 GATTTT GATTTT GATTTT GATTTT GATTTT GATTTT GATTTT GATTTT
1 GATTTT GATTTT GATTTT GATTTT GATTTT GATTTT GATTTT GATTTT
25860323 GATTTT GATTTT GATTTT GATTTT G-TTTT
1 GATTTT GATTTT GATTTT GATTTT GATTTT
25860352 TCTTAACCCA
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
5 4 0.06
6 67 0.94
ACGTcount: A:0.16, C:0.00, G:0.17, T:0.68
Consensus pattern (6 bp):
GATTTT
Found at i:25866137 original size:21 final size:21
Alignment explanation
Indices: 25866111--25866151 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
25866101 TAAGATTCAG
25866111 ATTATATTTTGCCCCATTTAT
1 ATTATATTTTGCCCCATTTAT
*
25866132 ATTATATTTTTCCCCATTTA
1 ATTATATTTTGCCCCATTTA
25866152 CTCAAAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.20, G:0.02, T:0.54
Consensus pattern (21 bp):
ATTATATTTTGCCCCATTTAT
Found at i:25867606 original size:20 final size:20
Alignment explanation
Indices: 25867581--25867621 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
25867571 TCAGATTATT
*
25867581 TAATAATTATAAGATGGCAA
1 TAATAATTATAAGATGACAA
*
25867601 TAATAATTATAGGATGACAA
1 TAATAATTATAAGATGACAA
25867621 T
1 T
25867622 TAATTTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.49, C:0.05, G:0.15, T:0.32
Consensus pattern (20 bp):
TAATAATTATAAGATGACAA
Found at i:25870849 original size:163 final size:162
Alignment explanation
Indices: 25870664--25870997 Score: 596
Period size: 163 Copynumber: 2.0 Consensus size: 162
25870654 GAACAGTACA
25870664 TGAATAAGACAAAGATTACATGAAGACAACCTTAAAAATATGGTAAAATGTAAAATAGCGAGAAG
1 TGAATAAGACAAAGATTACATGAAGACAACCTTAAAAATATGGTAAAATGTAAAATAGCGAGAAG
25870729 AGTTTATGGTCAAAATGGTTGTTCAACTAAGTACAGAAAATCGGTAAATGATGTGCAGAAGGTTT
66 AGTTTATGGTCAAAATGGTTGTTCAACTAAGTACAGAAAATCGGTAAATGATGTGCAGAAGGTTT
25870794 AGATATTTAGAATTTTGAAAGAGTTACACAGT
131 AGATATTTAGAATTTTGAAAGAGTTACACAGT
* *
25870826 TGAATAAGACAAAAGATTACATGAAGACAACCTTAAAAATATGGTAAAATGTAAGATAGTGAGAA
1 TGAATAAGAC-AAAGATTACATGAAGACAACCTTAAAAATATGGTAAAATGTAAAATAGCGAGAA
* *
25870891 GAGTTTATGGTCAAAATGGTTGTTCAACTCAGTATAGAAAATCGGTAAATGATGTGCAGAAGGTT
65 GAGTTTATGGTCAAAATGGTTGTTCAACTAAGTACAGAAAATCGGTAAATGATGTGCAGAAGGTT
* *
25870956 TAGATATTTAGAATTTTGGAAGATTTACACAGT
130 TAGATATTTAGAATTTTGAAAGAGTTACACAGT
25870989 TGAACTAAG
1 TGAA-TAAG
25870998 TAAGATATAT
Statistics
Matches: 164, Mismatches: 6, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
162 10 0.06
163 150 0.91
164 4 0.02
ACGTcount: A:0.43, C:0.08, G:0.21, T:0.28
Consensus pattern (162 bp):
TGAATAAGACAAAGATTACATGAAGACAACCTTAAAAATATGGTAAAATGTAAAATAGCGAGAAG
AGTTTATGGTCAAAATGGTTGTTCAACTAAGTACAGAAAATCGGTAAATGATGTGCAGAAGGTTT
AGATATTTAGAATTTTGAAAGAGTTACACAGT
Found at i:25872928 original size:101 final size:101
Alignment explanation
Indices: 25872796--25872979 Score: 264
Period size: 101 Copynumber: 1.8 Consensus size: 101
25872786 TTTGGTCTTA
* * * * *
25872796 GTTGAATATATGGCATTAGACCATTGAAAGAATTA-TGCATATCAGAA-TAAATGAGCACCTAAT
1 GTTGAATATATCGCATCAGACAACTGAAAGAATTATTG-ATATCA-AATTAAATGAGCACCTAAA
25872859 TCCCACTTATCCCAAGTTTTAGGGTGTCAGAAGCCTTG
64 TCCCACTTATCCCAAGTTTTAGGGTGTCAGAAGCCTTG
* * *
25872897 GTTGAATATATCGCATCAGAGAACTGAAAGAATTATTGGTATCAAATTAAATGAGCATCTAAATC
1 GTTGAATATATCGCATCAGACAACTGAAAGAATTATTGATATCAAATTAAATGAGCACCTAAATC
25872962 CCACTTATCCCAAGTTTT
66 CCACTTATCCCAAGTTTT
25872980 TGGGCTTCAT
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
100 2 0.03
101 69 0.95
102 2 0.03
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (101 bp):
GTTGAATATATCGCATCAGACAACTGAAAGAATTATTGATATCAAATTAAATGAGCACCTAAATC
CCACTTATCCCAAGTTTTAGGGTGTCAGAAGCCTTG
Found at i:25874372 original size:85 final size:83
Alignment explanation
Indices: 25874158--25874382 Score: 254
Period size: 85 Copynumber: 2.7 Consensus size: 83
25874148 GCCTGCATAT
* * * * *
25874158 GAGCTTCGGCACCACCGGCAACCTAGGACGTTGGATGTACGGGAGCCTCAAGCAGCATCAGCACC
1 GAGCTTCGACACCATCGGCAACCTAGGACGTTTGATGTGCGGGAG-CTCGAGCAGCATCAGCACC
25874223 TTTGTGCTTCGATGTGCCG
65 TTTGTGCTTCGATGTGCCG
* * * * *
25874242 GAGCCTCGAACACCATCGGCAACTTAGAACG-TTGGTGGTGCGGGAGCATCGAGCAGCATCGGCA
1 GAGCTTCG-ACACCATCGGCAACCTAGGACGTTTGAT-GTGCGGGAGC-TCGAGCAGCATCAGCA
* * *
25874306 TCTTTGTGCTTGGATGTGCGG
63 CCTTTGTGCTTCGATGTGCCG
* *
25874327 GAGCTTCAGACACCATCAGCAACCTAGGACGTTTGATGTGTGGGAGTCTCGAGCAG
1 GAGCTTC-GACACCATCGGCAACCTAGGACGTTTGATGTGCGGGAG-CTCGAGCAG
25874383 GACCGGCAAC
Statistics
Matches: 116, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
84 11 0.09
85 99 0.85
86 6 0.05
ACGTcount: A:0.21, C:0.26, G:0.32, T:0.21
Consensus pattern (83 bp):
GAGCTTCGACACCATCGGCAACCTAGGACGTTTGATGTGCGGGAGCTCGAGCAGCATCAGCACCT
TTGTGCTTCGATGTGCCG
Found at i:25874390 original size:85 final size:83
Alignment explanation
Indices: 25874158--25874408 Score: 252
Period size: 85 Copynumber: 3.0 Consensus size: 83
25874148 GCCTGCATAT
* * * * * * *
25874158 GAGCTTCGGCACCACCGGCAACCTAGGACGTTGGATGTACGGGAGCCTCAAGCAGCATCAGCACC
1 GAGCTTCGACACCATCGGCAACCTAGGACGTTTGATGTGCGGGAG-CTCGAGCAGCATCGGCAAC
*
25874223 TTTGTGCTTCGATGTGCCG
65 TTTGTGCTTGGATGTGCCG
* * * *
25874242 GAGCCTCGAACACCATCGGCAACTTAGAACG-TTGGTGGTGCGGGAGCATCGAGCAGCATCGGCA
1 GAGCTTCG-ACACCATCGGCAACCTAGGACGTTTGAT-GTGCGGGAGC-TCGAGCAGCATCGGCA
* *
25874306 TCTTTGTGCTTGGATGTGCGG
63 ACTTTGTGCTTGGATGTGCCG
* * * *
25874327 GAGCTTCAGACACCATCAGCAACCTAGGACGTTTGATGTGTGGGAGTCTCGAGCAGGACCGGCAA
1 GAGCTTC-GACACCATCGGCAACCTAGGACGTTTGATGTGCGGGAG-CTCGAGCAGCATCGGCAA
**
25874392 CTCCGTGCCTTGGATGT
64 CTTTGTG-CTTGGATGT
25874409 TTATAAAGAG
Statistics
Matches: 136, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
84 11 0.08
85 110 0.81
86 15 0.11
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (83 bp):
GAGCTTCGACACCATCGGCAACCTAGGACGTTTGATGTGCGGGAGCTCGAGCAGCATCGGCAACT
TTGTGCTTGGATGTGCCG
Found at i:25878630 original size:131 final size:131
Alignment explanation
Indices: 25878393--25878657 Score: 440
Period size: 131 Copynumber: 2.0 Consensus size: 131
25878383 CTCAAAAATT
*
25878393 GGATAAAAAATCTGATACAATGATGAAATTAAAGATGAATACTCTAATGTAATGAGGAAAAAGCT
1 GGATAAAAAATCTGATACAATGATGAAATTAAAGATGAATACTCTAATGTAATGAGGAAAAAACT
* * * * * *
25878458 CTCCCAGAGTATGTATTTCTTAGAAATATGTACAACTATATATACATGCAGCATTGAATTAATTA
66 CTCCCAAAGTATATATTTCTTAGAAATATGTACAACAATATATACATGCAACATTGAATCAACTA
25878523 A
131 A
* *
25878524 GGATAAAAAATCTGATACTATGATGAAATTAAAGATGAATACTCTAATGTATTGAGGAAAAAACT
1 GGATAAAAAATCTGATACAATGATGAAATTAAAGATGAATACTCTAATGTAATGAGGAAAAAACT
*
25878589 CTCTCAAAGTATATATTTCTTAGAAATATGTACAACAATATATACATGCAACATTGAATCAACTA
66 CTCCCAAAGTATATATTTCTTAGAAATATGTACAACAATATATACATGCAACATTGAATCAACTA
25878654 A
131 A
25878655 GGA
1 GGA
25878658 AAGAATATCT
Statistics
Matches: 124, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
131 124 1.00
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.29
Consensus pattern (131 bp):
GGATAAAAAATCTGATACAATGATGAAATTAAAGATGAATACTCTAATGTAATGAGGAAAAAACT
CTCCCAAAGTATATATTTCTTAGAAATATGTACAACAATATATACATGCAACATTGAATCAACTA
A
Found at i:25888321 original size:29 final size:28
Alignment explanation
Indices: 25888288--25888374 Score: 74
Period size: 28 Copynumber: 3.1 Consensus size: 28
25888278 TCATAAGAAC
25888288 ATTTTATGAAATTATATTTAATAATAATT
1 ATTTTAT-AAATTATATTTAATAATAATT
* * *
25888317 A-TTT-TAAATTGTATTAAATCAT-A-T
1 ATTTTATAAATTATATTTAATAATAATT
* *
25888341 ATTTTAATTAAAATATATTTAATATTAATT
1 ATTTT-A-TAAATTATATTTAATAATAATT
25888371 ATTT
1 ATTT
25888375 CAAATATTCA
Statistics
Matches: 44, Mismatches: 8, Indels: 11
0.70 0.13 0.17
Matches are distributed among these distances:
24 2 0.05
25 4 0.09
26 14 0.32
27 1 0.02
28 16 0.36
29 2 0.05
30 5 0.11
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (28 bp):
ATTTTATAAATTATATTTAATAATAATT
Found at i:25888541 original size:67 final size:66
Alignment explanation
Indices: 25888466--25888678 Score: 159
Period size: 67 Copynumber: 3.2 Consensus size: 66
25888456 ATTATAATGT
25888466 ATTT-AATAATAATTATGTTTAAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTA
1 ATTTAAATAATAATTATGTTTAAATATGATTAAA-TATTTATTATTGATATTAATAATCTTATTA
25888530 AA
65 AA
* * ** * * * * * * *
25888532 ATTTAAATAACAATAACAAATTT--CTGCTAATTATAAGAATT-TTATT-AAATT-ATATATTTT
1 ATTTAAATAATAAT--TATGTTTAAAT-ATGATTA-AATATTTATTATTGATATTAATA-ATCTT
25888592 AATTAAA
61 -ATTAAA
* * *
25888599 ATGTATTTAATAATAATTATGTTTAAATATGATTAAGATATTTATTACTGATAATAATAATCTTA
1 A--T-TTAAATAATAATTATGTTTAAATATGATTAA-ATATTTATTATTGATATTAATAATCTTA
25888664 TTAAA
62 TTAAA
25888669 ATTTAAATAA
1 ATTTAAATAA
25888679 CATTAACAAT
Statistics
Matches: 105, Mismatches: 26, Indels: 31
0.65 0.16 0.19
Matches are distributed among these distances:
65 3 0.03
66 12 0.11
67 28 0.27
68 14 0.13
69 16 0.15
70 22 0.21
71 7 0.07
72 3 0.03
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (66 bp):
ATTTAAATAATAATTATGTTTAAATATGATTAAATATTTATTATTGATATTAATAATCTTATTAA
A
Found at i:25888569 original size:137 final size:138
Alignment explanation
Indices: 25888422--25888687 Score: 437
Period size: 137 Copynumber: 1.9 Consensus size: 138
25888412 TAAGAATATG
*
25888422 AATTATTAAGAATTTTATTAAATTATATACCAAAATTATAATGTATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATACCAAAATTAAAATGTATTTAATAATAATTATGTTTA
* *
25888487 AATATGATTAA-ATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AATATGATTAAGA-TATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
25888551 ATTTCTGCT
130 ATTTCTGCT
****
25888560 AATTA-TAAGAATTTTATTAAATTATATATTTTAATTAAAATGTATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATACCAAAATTAAAATGTATTTAATAATAATTATGTTTA
*
25888624 AATATGATTAAGATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAA
66 AATATGATTAAGATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
25888688 TAATCATTTA
Statistics
Matches: 119, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
137 113 0.95
138 6 0.05
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.45
Consensus pattern (138 bp):
AATTATTAAGAATTTTATTAAATTATATACCAAAATTAAAATGTATTTAATAATAATTATGTTTA
AATATGATTAAGATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAA
TTTCTGCT
Found at i:25888720 original size:137 final size:137
Alignment explanation
Indices: 25888428--25888840 Score: 409
Period size: 137 Copynumber: 2.9 Consensus size: 137
25888418 TATGAATTAT
* **** *
25888428 TAAGAATTTTATTAAATTATATACCAAAATTATAATGTATTTAATAATAATTATGTTTAAATATG
1 TAAGAATTTTACTAAATTATATATTTTAATTAAAATGTATTTAATAATAATTATGTTTAAATATG
* * *
25888493 ATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAAATTTCTG
66 ATTAAATTATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAATTTCTA
* *
25888558 CTAATTA
131 CCAATAA
*
25888565 TAAGAATTTTATTAAATTATATATTTTAATTAAAATGTATTTAATAATAATTATGTTTAAATATG
1 TAAGAATTTTACTAAATTATATATTTTAATTAAAATGTATTTAATAATAATTATGTTTAAATATG
*
25888630 ATTAAGA-TATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCA
66 ATTAA-ATTATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAAC-A-AAT--
25888694 TT-TACCAA-AA
126 TTCTACCAATAA
* ** * * * * *
25888704 TAACTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTAT
1 TAA------G--AATTTTACTAA-ATTA-TATATT-T-TA-ATT-A---AAATGTATTTAATAAT
*
25888769 AATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATA
49 AATTATGTTTAAATATGATTAAATTATTTATTACTGATAATAATAATCTTATTAAAATTTAAATA
25888834 ACAATAA
114 ACAATAA
25888841 TCATTTACCA
Statistics
Matches: 233, Mismatches: 20, Indels: 27
0.83 0.07 0.10
Matches are distributed among these distances:
137 111 0.48
138 2 0.01
139 7 0.03
140 4 0.02
141 2 0.01
145 1 0.00
147 8 0.03
148 3 0.01
149 5 0.02
150 1 0.00
151 2 0.01
152 2 0.01
153 1 0.00
155 1 0.00
156 83 0.36
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (137 bp):
TAAGAATTTTACTAAATTATATATTTTAATTAAAATGTATTTAATAATAATTATGTTTAAATATG
ATTAAATTATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAATTTCTA
CCAATAA
Found at i:25888728 original size:156 final size:156
Alignment explanation
Indices: 25888552--25888836 Score: 543
Period size: 156 Copynumber: 1.8 Consensus size: 156
25888542 CAATAACAAA
*
25888552 TTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATGTATTTAATAATAATT
1 TTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATT
*
25888617 ATGTTTAAATATGATTAAGATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAT
66 ATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAT
25888682 TAACAATAATCATTTACCAAAATAAC
131 TAACAATAATCATTTACCAAAATAAC
*
25888708 TTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATT
1 TTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATT
25888773 ATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACA
66 ATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACA
25888837 ATAATCATTT
Statistics
Matches: 126, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
156 126 1.00
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.45
Consensus pattern (156 bp):
TTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATT
ATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAT
TAACAATAATCATTTACCAAAATAAC
Found at i:25888754 original size:18 final size:18
Alignment explanation
Indices: 25888726--25888774 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 18
25888716 AATTATAAGA
25888726 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
25888743 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
25888759 A-TTTAATTATAATTAT
1 ATTTTAATTA-AATTAT
25888775 GTTTAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 8 0.29
16 7 0.25
17 5 0.18
18 8 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:25888760 original size:16 final size:16
Alignment explanation
Indices: 25888726--25888780 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
25888716 AATTATAAGA
25888726 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
25888743 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
25888759 A-TTTAATTATAAT-T
1 ATTTTAATTAAAATAT
25888773 ATGTTTAA
1 AT-TTTAA
25888781 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:25888984 original size:44 final size:45
Alignment explanation
Indices: 25888919--25889009 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
25888909 ACCTCTATTC
* * *
25888919 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
25888963 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
25889008 CA
1 CA
25889010 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:25889011 original size:16 final size:16
Alignment explanation
Indices: 25888990--25889058 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
25888980 GATTAGCTAT
25888990 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
25889006 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
25889023 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
25889039 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
25889055 TACA
1 TACA
25889059 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:25889032 original size:33 final size:32
Alignment explanation
Indices: 25888990--25889058 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
25888980 GATTAGCTAT
25888990 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
25889023 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
25889055 TACA
1 TACA
25889059 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:25890809 original size:75 final size:75
Alignment explanation
Indices: 25890707--25891336 Score: 663
Period size: 75 Copynumber: 8.4 Consensus size: 75
25890697 AGCAAATTGC
* * * * * *
25890707 TAGAAAATCGAGGGTCGAGATATTAAATAAGCGGACCGTAAAAATATCACCTGTGAACGTAGGTC
1 TAGAAAACCAAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAATATCAACTGTGAACGTAGGTC
*
25890772 AACGAGCTGT
66 AGCGAGCTGT
** * * *
25890782 TAGAAAACCAAGGGTCGCGATCTTAAATCAATGGACCATAAAAATATCAACTGTGAACATAGATC
1 TAGAAAACCAAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAATATCAACTGTGAACGTAGGTC
*
25890847 AGCGAGTTGT
66 AGCGAGCTGT
* * *
25890857 TAGAAAACCAAGGGTCGTGATCTTAAATCAGCGGACCGTAAAAATGTCAACTGTGAACATAGGTC
1 TAGAAAACCAAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAATATCAACTGTGAACGTAGGTC
*
25890922 AACGAGCTGT
66 AGCGAGCTGT
** * * * * * *
25890932 TAGAAAACTGAGGGTCGTGATATTAAATCAGCGAACCATAAAAATATCAACAGTGAATGTAGGTC
1 TAGAAAACCAAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAATATCAACTGTGAACGTAGGTC
** *
25890997 AATGAACTGT
66 AGCGAGCTGT
* * * * * *
25891007 TAGAAAACCAAGGGTCGCAATCTTAAATCAGTGAACCATAAAAGTATC-ACTTGTGAATGTAGGT
1 TAGAAAACCAAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAATATCAAC-TGTGAACGTAGGT
*
25891071 CAGCGACCTGT
65 CAGCGAGCTGT
* * * * *
25891082 TAGAAAATCGAA-GGTTGCGATCTTAAATCAGCGAACCCT-AAAATATCAATTGTGAACGTAGGT
1 TAGAAAA-CCAAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAATATCAACTGTGAACGTAGGT
* * *
25891145 TAGCAAGCTAT
65 CAGCGAGCTGT
* * * * * *
25891156 TAGAAAACCGAGGGTCGCGATCTTAAATCAGTGGACCGTAAAAGTATCAGCTGGGAATGTAGGTC
1 TAGAAAACCAAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAATATCAACTGTGAACGTAGGTC
25891221 AGCGAGCTGT
66 AGCGAGCTGT
* * * * * * * *
25891231 TAAAAAACCAATGGTCGTGATCTTAAATTAACAGACCGCAAAAATATCAACTGCGAACGTAGGTC
1 TAGAAAACCAAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAATATCAACTGTGAACGTAGGTC
25891296 AGCGAGCTGT
66 AGCGAGCTGT
* * * * *
25891306 TAGAACACCGATGGTCACGATTTTAAATCAG
1 TAGAAAACCAAGGGTCGCGATCTTAAATCAG
25891337 TGGGACACAA
Statistics
Matches: 460, Mismatches: 90, Indels: 10
0.82 0.16 0.02
Matches are distributed among these distances:
73 2 0.00
74 58 0.13
75 397 0.86
76 3 0.01
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (75 bp):
TAGAAAACCAAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAATATCAACTGTGAACGTAGGTC
AGCGAGCTGT
Found at i:25891106 original size:225 final size:224
Alignment explanation
Indices: 25890707--25891336 Score: 701
Period size: 224 Copynumber: 2.8 Consensus size: 224
25890697 AGCAAATTGC
* * *
25890707 TAGAAAA-TCGAGGGTCGAGATATTAAATAAGCGGACCGTAAAAATATCACCTGTGAACGTAGGT
1 TAGAAAACT-GAGGGTCGAGATATTAAATCAGCGGACCGTAAAAATATCAACTGTGAATGTAGGT
*
25890771 CAACGAGCTGTTAGAAAACCAAGGGTCGCGATCTTAAATCAATGGACCATAAAAATATCAACTGT
65 CAACGAGCTGTTAGAAAACCAAGGGTCGCGATCTTAAATCAATGAACCATAAAAATATCAACTGT
** * * *
25890836 GAACATAGATCAGCGAGTTGTTAGAAAACCAAGGGTCGTGATCTTAAATCAGCGGACCGTAAAAA
130 GAACATAGATCAGCGACCTGTTAGAAAACCAAGGGTCGCGATCTTAAATCAGCGAACCCT-AAAA
* * *
25890901 TGTCAACTGTGAACATAGGTCAACGAGCTGT
194 TATCAACTGTGAACATAGGTCAACAAGCTAT
* * * *
25890932 TAGAAAACTGAGGGTCGTGATATTAAATCAGCGAACCATAAAAATATCAACAGTGAATGTAGGTC
1 TAGAAAACTGAGGGTCGAGATATTAAATCAGCGGACCGTAAAAATATCAACTGTGAATGTAGGTC
* * * * *
25890997 AATGAACTGTTAGAAAACCAAGGGTCGCAATCTTAAATCAGTGAACCATAAAAGTATC-ACTTGT
66 AACGAGCTGTTAGAAAACCAAGGGTCGCGATCTTAAATCAATGAACCATAAAAATATCAAC-TGT
** * * *
25891061 GAATGTAGGTCAGCGACCTGTTAGAAAATCGAA-GGTTGCGATCTTAAATCAGCGAACCCTAAAA
130 GAACATAGATCAGCGACCTGTTAGAAAA-CCAAGGGTCGCGATCTTAAATCAGCGAACCCTAAAA
* * * *
25891125 TATCAATTGTGAACGTAGGTTAGCAAGCTAT
194 TATCAACTGTGAACATAGGTCAACAAGCTAT
* * * * * * *
25891156 TAGAAAACCGAGGGTCGCGATCTTAAATCAGTGGACCGTAAAAGTATCAGCTGGGAATGTAGGTC
1 TAGAAAACTGAGGGTCGAGATATTAAATCAGCGGACCGTAAAAATATCAACTGTGAATGTAGGTC
* * * * * * ** *
25891221 AGCGAGCTGTTAAAAAACCAATGGTCGTGATCTTAAATTAA-CAGACCGCAAAAATATCAACTGC
66 AACGAGCTGTTAGAAAACCAAGGGTCGCGATCTTAAATCAATGA-ACCATAAAAATATCAACTGT
* * * * * * * *
25891285 GAACGTAGGTCAGCGAGCTGTTAGAACACCGATGGTCACGATTTTAAATCAG
130 GAACATAGATCAGCGACCTGTTAGAAAACCAAGGGTCGCGATCTTAAATCAG
25891337 TGGGACACAA
Statistics
Matches: 337, Mismatches: 62, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
223 3 0.01
224 171 0.51
225 159 0.47
226 4 0.01
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (224 bp):
TAGAAAACTGAGGGTCGAGATATTAAATCAGCGGACCGTAAAAATATCAACTGTGAATGTAGGTC
AACGAGCTGTTAGAAAACCAAGGGTCGCGATCTTAAATCAATGAACCATAAAAATATCAACTGTG
AACATAGATCAGCGACCTGTTAGAAAACCAAGGGTCGCGATCTTAAATCAGCGAACCCTAAAATA
TCAACTGTGAACATAGGTCAACAAGCTAT
Found at i:25891410 original size:61 final size:61
Alignment explanation
Indices: 25891302--25891425 Score: 144
Period size: 61 Copynumber: 2.0 Consensus size: 61
25891292 GGTCAGCGAG
* * * ** **
25891302 CTGTTAGAACACCGATGGTCACGATTTTAAATCAGTGGGACACAAAAATATCAGTTGTGAA
1 CTGTTAGAAAACCAATGGTCACGATCTTAAATCAGTCAGACACAAAAATATCAACTGTGAA
*
25891363 CTGTTAGAAAACCAATGGTCGCGATCTTAAATCAG-CAGAC-CGTAAAAATATCAACTGTGAA
1 CTGTTAGAAAACCAATGGTCACGATCTTAAATCAGTCAGACAC--AAAAATATCAACTGTGAA
25891424 CT
1 CT
25891426 TAGGTCAACA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
59 1 0.02
60 3 0.06
61 49 0.92
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (61 bp):
CTGTTAGAAAACCAATGGTCACGATCTTAAATCAGTCAGACACAAAAATATCAACTGTGAA
Found at i:25896770 original size:75 final size:75
Alignment explanation
Indices: 25896679--25896829 Score: 302
Period size: 75 Copynumber: 2.0 Consensus size: 75
25896669 TTCTTGAATG
25896679 ATAGAATCGTAAAAAATCAACACGTATTTGTGCACAGCCTATTCTCTTTCCATTCATGCTTCTCA
1 ATAGAATCGTAAAAAATCAACACGTATTTGTGCACAGCCTATTCTCTTTCCATTCATGCTTCTCA
25896744 AGGCATGGGA
66 AGGCATGGGA
25896754 ATAGAATCGTAAAAAATCAACACGTATTTGTGCACAGCCTATTCTCTTTCCATTCATGCTTCTCA
1 ATAGAATCGTAAAAAATCAACACGTATTTGTGCACAGCCTATTCTCTTTCCATTCATGCTTCTCA
25896819 AGGCATGGGA
66 AGGCATGGGA
25896829 A
1 A
25896830 GCATCTTCCA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (75 bp):
ATAGAATCGTAAAAAATCAACACGTATTTGTGCACAGCCTATTCTCTTTCCATTCATGCTTCTCA
AGGCATGGGA
Found at i:25898009 original size:3 final size:3
Alignment explanation
Indices: 25898001--25898044 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
25897991 ATGAAACAGA
25898001 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
25898045 TAGAGAACTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:25913327 original size:31 final size:31
Alignment explanation
Indices: 25913289--25913350 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
25913279 CTCCGCACCG
25913289 GGCATGTCACCTTGCCCTTGGCTTTCAAACT
1 GGCATGTCACCTTGCCCTTGGCTTTCAAACT
25913320 GGCATGTCACCTTGCCCTTGGCTTTCAAACT
1 GGCATGTCACCTTGCCCTTGGCTTTCAAACT
25913351 ATCTTTTTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.16, C:0.32, G:0.19, T:0.32
Consensus pattern (31 bp):
GGCATGTCACCTTGCCCTTGGCTTTCAAACT
Found at i:25917472 original size:37 final size:37
Alignment explanation
Indices: 25917412--25917497 Score: 113
Period size: 37 Copynumber: 2.3 Consensus size: 37
25917402 TATTCAAAGT
*
25917412 AAAACACGCCAATCGCTCGTAAGAGCTAATCC-ACCTG
1 AAAACACGCCAATCGCTCATAAGAGCTAATCCAACC-G
* *
25917449 ATAACACGCCAGAT-GCTCATAAGAGCTAGTCCAACCG
1 AAAACACGCCA-ATCGCTCATAAGAGCTAATCCAACCG
25917486 AAAACACGCCAA
1 AAAACACGCCAA
25917498 AACAGGGAGT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
36 1 0.02
37 37 0.86
38 5 0.12
ACGTcount: A:0.38, C:0.31, G:0.16, T:0.14
Consensus pattern (37 bp):
AAAACACGCCAATCGCTCATAAGAGCTAATCCAACCG
Found at i:25920546 original size:20 final size:21
Alignment explanation
Indices: 25920500--25920547 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
25920490 GACATATATC
* * *
25920500 TTGATTTTATTTTATTCCAAT
1 TTGATTTGATTTTAATCCAAA
25920521 TTGATTTGATTTTAAT-CAAA
1 TTGATTTGATTTTAATCCAAA
25920541 TTGATTT
1 TTGATTT
25920548 AATTGCTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.58
Consensus pattern (21 bp):
TTGATTTGATTTTAATCCAAA
Found at i:25920991 original size:5 final size:5
Alignment explanation
Indices: 25920981--25921005 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
25920971 AATATAAATT
25920981 ATTTA ATTTA ATTTA ATTTA ATTTA
1 ATTTA ATTTA ATTTA ATTTA ATTTA
25921006 TATATAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTTA
Found at i:25920991 original size:20 final size:21
Alignment explanation
Indices: 25920964--25921036 Score: 80
Period size: 20 Copynumber: 3.6 Consensus size: 21
25920954 TTCGTATCTA
*
25920964 ATATTTAAATATAAATTATTT
1 ATATTTAAATATAATTTATTT
*
25920985 A-ATTT-AATTTAATTTAATTT
1 ATATTTAAATATAATTT-ATTT
* *
25921005 ATATATAAATAT-TTTTATTT
1 ATATTTAAATATAATTTATTT
25921025 ATATTTAAATAT
1 ATATTTAAATAT
25921037 TTATTTGCTA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
19 8 0.19
20 24 0.56
21 7 0.16
22 4 0.09
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
ATATTTAAATATAATTTATTT
Found at i:25922839 original size:15 final size:16
Alignment explanation
Indices: 25922799--25922834 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
25922789 TAAATTCTAA
25922799 TTTTAATTATCATAAT
1 TTTTAATTATCATAAT
25922815 TTTTAATTATCATAAT
1 TTTTAATTATCATAAT
25922831 TTTT
1 TTTT
25922835 CTTATATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTAATTATCATAAT
Found at i:25924013 original size:31 final size:29
Alignment explanation
Indices: 25923971--25924046 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 29
25923961 ACAAGCAAAA
*
25923971 AAATAATAAATAAGCATATATCTTA-ATTTTT
1 AAATAA-AAATAAGCATATAT-TTATA-TTAT
* *
25924002 AGATATAAAATAATCATATATTTATATTAT
1 AAATA-AAAATAAGCATATATTTATATTAT
25924032 AAATAAAAATAAGCA
1 AAATAAAAATAAGCA
25924047 CATAAACAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
29 9 0.24
30 10 0.26
31 18 0.47
32 1 0.03
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.37
Consensus pattern (29 bp):
AAATAAAAATAAGCATATATTTATATTAT
Found at i:25928156 original size:347 final size:347
Alignment explanation
Indices: 25927513--25928561 Score: 2026
Period size: 347 Copynumber: 3.0 Consensus size: 347
25927503 ATGTTACAAT
*
25927513 CCAACAATTAATACAACATCAAAGTTAAAGAAAGATCAAAGCCACAATAACAAAAAGAAAAGAAA
1 CCAA-AATTAATACAACATCAAAGTTAAAGAAAGATCAAAGCCACAATAGCAAAAAGAAAAGAAA
25927578 ACGAAAAGCAAAACAAAAAGGAGAAAATTGAAAAGGAAAAGAAAACCAATAATAAAAGAACGTTT
65 ACGAAAAGCAAAACAAAAAGGAGAAAATTGAAAAGGAAAAGAAAACCAATAATAAAAGAACGTTT
25927643 TAGTAAAGAGAGGGAAAAAGGAAATTTAGTTAATAGTAAAAGAAGAAAAAATATACTTAACTACC
130 TAGTAAAGAGAGGGAAAAAGGAAATTTAGTTAATAGTAAAAGAAGAAAAAATATACTTAACTACC
25927708 ACTCGGTGCAAAATATTCCTCATCGCTTGTGTAAAAACTCGAACACGGGACCATAGGTAATATGA
195 ACTCGGTGCAAAATATTCCTCATCGCTTGTGTAAAAACTCGAACACGGGACCATAGGTAATATGA
*
25927773 AACTTAACTATTGAATTAGCAGGCTCATTCTTGAGCCAAGTTAACACAGAAATAAACTTAAGTCG
260 AACTTAACTATTGAATTAGCAGGCTCATTCTTGAGCCAAATTAACACAGAAATAAACTTAAGTCG
25927838 AGGACTCAAGGATAGGGGTTCAA
325 AGGACTCAAGGATAGGGGTTCAA
25927861 CCAAAATTAATACAACATCAAAGTTAAAGAAAGATCAAAGCCACAATAGCAAAAAGAAAAGAAAA
1 CCAAAATTAATACAACATCAAAGTTAAAGAAAGATCAAAGCCACAATAGCAAAAAGAAAAGAAAA
25927926 CGAAAAGCAAAACAAAAAGGAGAAAATTGAAAAGGAAAAGAAAACCAATAATAAAAGAACGTTTT
66 CGAAAAGCAAAACAAAAAGGAGAAAATTGAAAAGGAAAAGAAAACCAATAATAAAAGAACGTTTT
25927991 AGTAAAGAGAGGGAAAAAGGAAATTTAGTTAATAGTAAAAGAAGAAAAAATATACTTAACTACCA
131 AGTAAAGAGAGGGAAAAAGGAAATTTAGTTAATAGTAAAAGAAGAAAAAATATACTTAACTACCA
25928056 CTCGGTGCAAAATATTCCTCATCGCTTGTGTAAAAACTCGAACACGGGACCATAGGTAATATGAA
196 CTCGGTGCAAAATATTCCTCATCGCTTGTGTAAAAACTCGAACACGGGACCATAGGTAATATGAA
*
25928121 ACTTAACTATTGAATTAGCAGGCTCATTTTTGAGCCAAATTAACACAGAAATAAACTTAAGTCGA
261 ACTTAACTATTGAATTAGCAGGCTCATTCTTGAGCCAAATTAACACAGAAATAAACTTAAGTCGA
25928186 GGACTCAAGGATAGGGGTTCAA
326 GGACTCAAGGATAGGGGTTCAA
25928208 CCAAAATTAATACAACATCAAAGTTAAAGAAAGATCAAAGCCACAATAGCAAAAAGAAAAGAAAA
1 CCAAAATTAATACAACATCAAAGTTAAAGAAAGATCAAAGCCACAATAGCAAAAAGAAAAGAAAA
25928273 CGAAAAGCAAAACAAAAAGGAGAAAATTGAAAAGGAAAAGAAAACCAATAATAAAAGAACGTTTT
66 CGAAAAGCAAAACAAAAAGGAGAAAATTGAAAAGGAAAAGAAAACCAATAATAAAAGAACGTTTT
25928338 AGTAAAGAGAGGGAAAAAGGAAATTTAGTTAATAGTAAAAGAAGAAAAAATATACTTAACTACCA
131 AGTAAAGAGAGGGAAAAAGGAAATTTAGTTAATAGTAAAAGAAGAAAAAATATACTTAACTACCA
* *
25928403 CTCGGTGCAAAATATTCCTCATCGCTTGTGTAAAAACTCGAACACAGGACCATAAGTAATATGAA
196 CTCGGTGCAAAATATTCCTCATCGCTTGTGTAAAAACTCGAACACGGGACCATAGGTAATATGAA
* *
25928468 ACTTGACCATTGAATTAGCAGGCTCATTCTTGAGCCAAATTAACACAGAAATAAACTTAAGTCGA
261 ACTTAACTATTGAATTAGCAGGCTCATTCTTGAGCCAAATTAACACAGAAATAAACTTAAGTCGA
25928533 GGACTCAAGGATAGGGGTTCAA
326 GGACTCAAGGATAGGGGTTCAA
25928555 CCAAAAT
1 CCAAAAT
25928562 AAACAATAAA
Statistics
Matches: 693, Mismatches: 8, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
347 689 0.99
348 4 0.01
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (347 bp):
CCAAAATTAATACAACATCAAAGTTAAAGAAAGATCAAAGCCACAATAGCAAAAAGAAAAGAAAA
CGAAAAGCAAAACAAAAAGGAGAAAATTGAAAAGGAAAAGAAAACCAATAATAAAAGAACGTTTT
AGTAAAGAGAGGGAAAAAGGAAATTTAGTTAATAGTAAAAGAAGAAAAAATATACTTAACTACCA
CTCGGTGCAAAATATTCCTCATCGCTTGTGTAAAAACTCGAACACGGGACCATAGGTAATATGAA
ACTTAACTATTGAATTAGCAGGCTCATTCTTGAGCCAAATTAACACAGAAATAAACTTAAGTCGA
GGACTCAAGGATAGGGGTTCAA
Found at i:25930293 original size:24 final size:24
Alignment explanation
Indices: 25930243--25930290 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
25930233 TATGGTGGAA
* * *
25930243 AAATATTTAATTAATAAATATATT
1 AAATATTTAATAAAAAAATAGATT
25930267 AAATATTTAGATAAAAAAATAGAT
1 AAATATTTA-ATAAAAAAATAGAT
25930291 AAAGCTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATTTAATAAAAAAATAGATT
Found at i:25932149 original size:24 final size:24
Alignment explanation
Indices: 25932121--25932172 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
25932111 TTTCTAGAAG
* *
25932121 ATTTAGTATTTATGAATATAATAT
1 ATTTAGCATTTATGAACATAATAT
* *
25932145 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATGAACATAATAT
25932169 ATTT
1 ATTT
25932173 GACTTTGGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAACATAATAT
Found at i:25934788 original size:35 final size:35
Alignment explanation
Indices: 25934717--25934789 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
25934707 CTCTATCTCC
* *
25934717 AAAAATAGATCTAGAAGAGAAATTAAACCTTAAAA
1 AAAAATAGAACTAGAAGAGAAATTAAACCTCAAAA
* *
25934752 AAAAATAGAAGTAGAAGAGAAATTAAACCTCCAAA
1 AAAAATAGAACTAGAAGAGAAATTAAACCTCAAAA
25934787 AAA
1 AAA
25934790 GTATGCCGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.62, C:0.10, G:0.12, T:0.16
Consensus pattern (35 bp):
AAAAATAGAACTAGAAGAGAAATTAAACCTCAAAA
Found at i:25938192 original size:43 final size:43
Alignment explanation
Indices: 25938144--25938290 Score: 149
Period size: 43 Copynumber: 3.5 Consensus size: 43
25938134 ATACCCAGAT
*
25938144 ATGGTCTTACATGTAATCTCATATCGATGCCAATAGCCTAGCC
1 ATGGTCTTACATGTAATCTCATATCGATGCCAATAGCCTAGAC
* * * * *
25938187 ATGGTCTTACATGAAATCACATATTGATGCCAAT-GTCCCAAAC
1 ATGGTCTTACATGTAATCTCATATCGATGCCAATAG-CCTAGAC
* * * * *
25938230 ATGGTCTTACACG-ATTCTCATGTCGATGCC-ATA-TCTCAGAT
1 ATGGTCTTACATGTAATCTCATATCGATGCCAATAGCCT-AGAC
25938271 ATGGTCTTACATGTAATCTC
1 ATGGTCTTACATGTAATCTC
25938291 GGTAACCCTA
Statistics
Matches: 83, Mismatches: 17, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
40 1 0.01
41 16 0.19
42 19 0.23
43 47 0.57
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.32
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCTCATATCGATGCCAATAGCCTAGAC
Found at i:25944183 original size:50 final size:51
Alignment explanation
Indices: 25944068--25944203 Score: 195
Period size: 50 Copynumber: 2.7 Consensus size: 51
25944058 GATAATAACA
**
25944068 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCATCTCATATCGG
* * *
25944119 TGCCCATGCCATGTCCCAGACATGGTCTTACGA-GGGA-CATCTCATCTCGG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTAC-ATGGGATCATCTCATATCGG
*
25944169 TGCCAACGCCATGTCCCAGACATGGTCTTACATGG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGG
25944204 ACCTTTTTAC
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
49 1 0.01
50 41 0.54
51 33 0.43
52 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (51 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCATCTCATATCGG
Found at i:25954756 original size:61 final size:58
Alignment explanation
Indices: 25954647--25954762 Score: 160
Period size: 61 Copynumber: 1.9 Consensus size: 58
25954637 ATCACTTTAA
* *
25954647 TATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAAATC
1 TATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATC
* * *
25954705 TATTAAATTAATAGAATATTTATCTACAATATAAATATTAAATTAAGTTTAATATTAA
1 TATTAAATTAATAGAATACTTA--T-CAAGATAAATATTAAATTAAATTTAATATTAA
25954763 GATCATCACT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
58 20 0.40
60 1 0.02
61 29 0.58
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.42
Consensus pattern (58 bp):
TATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATC
Found at i:25954843 original size:17 final size:17
Alignment explanation
Indices: 25954808--25954840 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
25954798 TAAAGATAAG
*
25954808 TATTAAATTTAATTTAA
1 TATTAAATTTAATTAAA
25954825 TATTAAATTT-ATTAAA
1 TATTAAATTTAATTAAA
25954841 ATAATATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TATTAAATTTAATTAAA
Found at i:25955186 original size:19 final size:19
Alignment explanation
Indices: 25955119--25955186 Score: 66
Period size: 19 Copynumber: 3.5 Consensus size: 19
25955109 CTCAATTCAA
*
25955119 CCAATTTTTGGATCTCA-GT
1 CCAA-TTTTCGATCTCAGGT
* * *
25955138 CTCAATTTTGGATTCTCGGGC
1 C-CAATTTTCGA-TCTCAGGT
25955159 CCAATTTTCGATCTCAGGT
1 CCAATTTTCGATCTCAGGT
25955178 CCAATTTTC
1 CCAATTTTC
25955187 AAGTTCAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
19 23 0.56
20 16 0.39
21 2 0.05
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.40
Consensus pattern (19 bp):
CCAATTTTCGATCTCAGGT
Found at i:25956709 original size:49 final size:49
Alignment explanation
Indices: 25956637--25956732 Score: 165
Period size: 49 Copynumber: 2.0 Consensus size: 49
25956627 TAGGCAATGA
* *
25956637 TAAACTTGGTCTTCCACTTTCTACACTCTTATCACTATTTATACATTGC
1 TAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATACATTGC
*
25956686 TAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATGCATT
1 TAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATACATT
25956733 CTTGAATGTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.25, C:0.26, G:0.06, T:0.43
Consensus pattern (49 bp):
TAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATACATTGC
Found at i:25958032 original size:73 final size:73
Alignment explanation
Indices: 25957936--25958093 Score: 271
Period size: 73 Copynumber: 2.2 Consensus size: 73
25957926 CATTTGAATA
* *
25957936 CATCATCTCATGCAATGGCATGATTCATATCTTCGATCAATACTTGAATTCATTCAAGTTTCACA
1 CATCATCTCATACAACGGCATGATTCATATCTTCGATCAATACTTGAATTCATTCAAGTTTCACA
*
25958001 TCTCAATT
66 TCTCAATC
* *
25958009 CATCATCTCATACAACGGTATGATTCATATCTTTGATCAATACTTGAATTCATTCAAGTTTCACA
1 CATCATCTCATACAACGGCATGATTCATATCTTCGATCAATACTTGAATTCATTCAAGTTTCACA
25958074 TCTCAATC
66 TCTCAATC
25958082 CATCATCTCATA
1 CATCATCTCATA
25958094 TCTTATTTCT
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
73 80 1.00
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (73 bp):
CATCATCTCATACAACGGCATGATTCATATCTTCGATCAATACTTGAATTCATTCAAGTTTCACA
TCTCAATC
Found at i:25963330 original size:72 final size:72
Alignment explanation
Indices: 25963249--25963404 Score: 258
Period size: 72 Copynumber: 2.2 Consensus size: 72
25963239 CATTTGAATA
* *
25963249 CATCATCTCATGCAATGCATGATTCATATCTTCGATCAATACTTGAATTCATTCAAGTTTCACAT
1 CATCATCTCATACAAGGCATGATTCATATCTTCGATCAATACTTGAATTCATTCAAGTTTCACAT
*
25963314 CTCAATT
66 CTCAATC
* * *
25963321 CATCATCTCATACACGGTATGATTCATATCTTTGATCAATACTTGAATTCATTCAAGTTTCACAT
1 CATCATCTCATACAAGGCATGATTCATATCTTCGATCAATACTTGAATTCATTCAAGTTTCACAT
25963386 CTCAATC
66 CTCAATC
25963393 CATCATCTCATA
1 CATCATCTCATA
25963405 TCTTATTTCT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 78 1.00
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (72 bp):
CATCATCTCATACAAGGCATGATTCATATCTTCGATCAATACTTGAATTCATTCAAGTTTCACAT
CTCAATC
Found at i:25965814 original size:19 final size:19
Alignment explanation
Indices: 25965747--25965814 Score: 66
Period size: 19 Copynumber: 3.5 Consensus size: 19
25965737 CTCAATTCAA
*
25965747 CCAATTTTTGGATCTCA-GT
1 CCAA-TTTTCGATCTCAGGT
* * *
25965766 CTCAATTTTGGATTCTCGGGC
1 C-CAATTTTCGA-TCTCAGGT
25965787 CCAATTTTCGATCTCAGGT
1 CCAATTTTCGATCTCAGGT
25965806 CCAATTTTC
1 CCAATTTTC
25965815 AAGTTCAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
19 23 0.56
20 16 0.39
21 2 0.05
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.40
Consensus pattern (19 bp):
CCAATTTTCGATCTCAGGT
Found at i:25967336 original size:49 final size:49
Alignment explanation
Indices: 25967264--25967359 Score: 165
Period size: 49 Copynumber: 2.0 Consensus size: 49
25967254 TAGGCAATGA
* *
25967264 TAAACTTGGTCTTCCACTTTCTACACTCTTATCACTATTTATACATTGC
1 TAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATACATTGC
*
25967313 TAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATGCATT
1 TAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATACATT
25967360 CTTGAATGTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.25, C:0.26, G:0.06, T:0.43
Consensus pattern (49 bp):
TAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATACATTGC
Found at i:25968658 original size:73 final size:73
Alignment explanation
Indices: 25968562--25968719 Score: 271
Period size: 73 Copynumber: 2.2 Consensus size: 73
25968552 CATTTGAATA
* *
25968562 CATCATCTCATGCAATGGCATGATTCATATCTTCGATCAATACTTGAATTCATTCAAGTTTCACA
1 CATCATCTCATACAACGGCATGATTCATATCTTCGATCAATACTTGAATTCATTCAAGTTTCACA
*
25968627 TCTCAATT
66 TCTCAATC
* *
25968635 CATCATCTCATACAACGGTATGATTCATATCTTTGATCAATACTTGAATTCATTCAAGTTTCACA
1 CATCATCTCATACAACGGCATGATTCATATCTTCGATCAATACTTGAATTCATTCAAGTTTCACA
25968700 TCTCAATC
66 TCTCAATC
25968708 CATCATCTCATA
1 CATCATCTCATA
25968720 TCTTATTTCT
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
73 80 1.00
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (73 bp):
CATCATCTCATACAACGGCATGATTCATATCTTCGATCAATACTTGAATTCATTCAAGTTTCACA
TCTCAATC
Found at i:25970038 original size:15 final size:15
Alignment explanation
Indices: 25970018--25970050 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
25970008 TGTTTTCATT
*
25970018 TTATTATCTTTATTA
1 TTATTATCATTATTA
25970033 TTATTATCATTATTA
1 TTATTATCATTATTA
25970048 TTA
1 TTA
25970051 AAGTTACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (15 bp):
TTATTATCATTATTA
Found at i:25976158 original size:20 final size:21
Alignment explanation
Indices: 25976121--25976160 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
25976111 TTGTTTAATT
*
25976121 TTTTATTTTTAATTAATAAATA
1 TTTTATTTATAA-TAATAAATA
25976143 TTTTATTTATAA-AATAAA
1 TTTTATTTATAATAATAAA
25976161 ATAATAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTTATTTATAATAATAAATA
Found at i:25976336 original size:16 final size:18
Alignment explanation
Indices: 25976305--25976337 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
25976295 TGAAAATTAA
25976305 ATATTATACATAAAAATT
1 ATATTATACATAAAAATT
25976323 ATATT-TAC-TAAAAAT
1 ATATTATACATAAAAAT
25976338 AATGATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (18 bp):
ATATTATACATAAAAATT
Found at i:25978304 original size:12 final size:12
Alignment explanation
Indices: 25978284--25978319 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
25978274 TTTTTAATTA
*
25978284 ATTAATATTATT
1 ATTACTATTATT
25978296 ATTACTATTATT
1 ATTACTATTATT
*
25978308 ATTGCTATTATT
1 ATTACTATTATT
25978320 TATATATTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (12 bp):
ATTACTATTATT
Found at i:25978544 original size:9 final size:9
Alignment explanation
Indices: 25978517--25978571 Score: 53
Period size: 9 Copynumber: 6.2 Consensus size: 9
25978507 TATATTTTTA
25978517 TATTTTA-T
1 TATTTTATT
*
25978525 AATTTTATT
1 TATTTTATT
*
25978534 TATTTTCTT
1 TATTTTATT
25978543 TATTGTTA-T
1 TATT-TTATT
25978552 TATTATTATT
1 TATT-TTATT
25978562 TA-TTTATT
1 TATTTTATT
25978570 TA
1 TA
25978572 CGTGCCTCTT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
8 13 0.33
9 21 0.54
10 5 0.13
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (9 bp):
TATTTTATT
Found at i:25981150 original size:44 final size:47
Alignment explanation
Indices: 25981091--25981182 Score: 145
Period size: 44 Copynumber: 2.0 Consensus size: 47
25981081 AAAATGGTTG
25981091 AACCAATTTATAAATTTTT-AAA-ATAT-TTTTTTAAAAAAGTATGC
1 AACCAATTTATAAATTTTTAAAATATATATTTTTTAAAAAAGTATGC
* *
25981135 AACCGATTTATAAATTTTTAAAATATATATTTTTTTAAAAAGTATGC
1 AACCAATTTATAAATTTTTAAAATATATATTTTTTAAAAAAGTATGC
25981182 A
1 A
25981183 TTTTTATTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
44 18 0.42
45 3 0.07
46 4 0.09
47 18 0.42
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (47 bp):
AACCAATTTATAAATTTTTAAAATATATATTTTTTAAAAAAGTATGC
Found at i:25981189 original size:44 final size:43
Alignment explanation
Indices: 25981096--25981182 Score: 129
Period size: 47 Copynumber: 1.9 Consensus size: 43
25981086 GGTTGAACCA
25981096 ATTTATAAATTTTTAAAATATTTTTTTAAAAAAGTATGCAACCG
1 ATTTATAAATTTTTAAAATATTTTTTTAAAAAAGTATGCAA-CG
*
25981140 ATTTATAAATTTTTAAAATATATATTTTTTTAAAAAGTATGCA
1 ATTTATAAATTTTT-AAA-ATAT-TTTTTTAAAAAAGTATGCA
25981183 TTTTTATTTG
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
44 14 0.36
45 3 0.08
46 4 0.10
47 18 0.46
ACGTcount: A:0.44, C:0.05, G:0.06, T:0.46
Consensus pattern (43 bp):
ATTTATAAATTTTTAAAATATTTTTTTAAAAAAGTATGCAACG
Found at i:25985586 original size:3 final size:3
Alignment explanation
Indices: 25985580--25985634 Score: 55
Period size: 3 Copynumber: 19.0 Consensus size: 3
25985570 TCTTGTAAGC
*
25985580 TAA TAA TAA TAA -AA TAA TAA CTAA -ATC TAA TAA TAA T-A TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA -TAA TA-A TAA TAA TAA TAA TAA TAA
25985624 T-A TAA TAA TAA
1 TAA TAA TAA TAA
25985635 ATGAAAATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
2 7 0.16
3 33 0.75
4 4 0.09
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:25985597 original size:11 final size:11
Alignment explanation
Indices: 25985581--25985689 Score: 69
Period size: 11 Copynumber: 9.2 Consensus size: 11
25985571 CTTGTAAGCT
25985581 AATAATAATAA
1 AATAATAATAA
25985592 AATAATAACTAA
1 AATAATAA-TAA
*
25985604 ATCTAATAATAA
1 A-ATAATAATAA
* *
25985616 TATAATAATAT
1 AATAATAATAA
25985627 AATAATAAATGAA
1 AATAAT-AAT-AA
*
25985640 AATAATGAACCAA
1 AATAAT-AA-TAA
25985653 TTAA-ATATAAT-A
1 --AATA-ATAATAA
25985665 AATATATAATAA
1 AATA-ATAATAA
*
25985677 AATAATAAGAA
1 AATAATAATAA
25985688 AA
1 AA
25985690 ATAAATGGAA
Statistics
Matches: 78, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
10 2 0.03
11 36 0.46
12 16 0.21
13 17 0.22
14 3 0.04
15 4 0.05
ACGTcount: A:0.65, C:0.04, G:0.03, T:0.28
Consensus pattern (11 bp):
AATAATAATAA
Found at i:25985695 original size:37 final size:40
Alignment explanation
Indices: 25985614--25985695 Score: 91
Period size: 42 Copynumber: 2.1 Consensus size: 40
25985604 ATCTAATAAT
*
25985614 AATATAATAATATAATAATAAATGAAAATAATGAACCAATTA
1 AATATAATAATATAATAATAAA-GAAAATAATGAA-CAAATA
*
25985656 AATATAATAA-ATATATAATAAA-ATAATAA-GAA-AAATA
1 AATATAATAATATA-ATAATAAAGAAAATAATGAACAAATA
25985693 AAT
1 AAT
25985696 GGAAATGATC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
37 7 0.19
39 3 0.08
40 6 0.16
41 3 0.08
42 18 0.49
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (40 bp):
AATATAATAATATAATAATAAAGAAAATAATGAACAAATA
Found at i:25992865 original size:22 final size:22
Alignment explanation
Indices: 25992840--25992884 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
25992830 GCTTGTATGG
* *
25992840 GTTTAGCACTTCAGTGCTCTCT
1 GTTTAGAACTACAGTGCTCTCT
*
25992862 GTTTAGAACTACGGTGCTCTCT
1 GTTTAGAACTACAGTGCTCTCT
25992884 G
1 G
25992885 GTATGGTGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (22 bp):
GTTTAGAACTACAGTGCTCTCT
Found at i:25996306 original size:19 final size:19
Alignment explanation
Indices: 25996260--25996306 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
25996250 TGTAAACGTG
*
25996260 TCAAAATTAAAAGAAACTT
1 TCAAAATTAAAAGAAACTA
*
25996279 TAGAAAATTAAAAGAATA-TA
1 T-CAAAATTAAAAGAA-ACTA
25996299 TCAAAATT
1 TCAAAATT
25996307 TTGAAATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 7 0.30
20 15 0.65
21 1 0.04
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.28
Consensus pattern (19 bp):
TCAAAATTAAAAGAAACTA
Found at i:25998033 original size:53 final size:54
Alignment explanation
Indices: 25997970--25998078 Score: 166
Period size: 53 Copynumber: 2.0 Consensus size: 54
25997960 AAAAAAATAT
* *
25997970 TATTATTACTTATCAAAAAATAAATAGT-AAAAGACATGAAATTACCATTTAAA
1 TATTATTACTTATCAAAAAATAAACAGTAAAAAAACATGAAATTACCATTTAAA
* * *
25998023 TATTATTACTTATCAAAAAATGAACATTAAAAAAATATGAAATTACCATTTAAA
1 TATTATTACTTATCAAAAAATAAACAGTAAAAAAACATGAAATTACCATTTAAA
25998077 TA
1 TA
25998079 ATTAATTTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 25 0.50
54 25 0.50
ACGTcount: A:0.53, C:0.09, G:0.05, T:0.33
Consensus pattern (54 bp):
TATTATTACTTATCAAAAAATAAACAGTAAAAAAACATGAAATTACCATTTAAA
Found at i:25999478 original size:22 final size:21
Alignment explanation
Indices: 25999453--25999517 Score: 51
Period size: 22 Copynumber: 2.9 Consensus size: 21
25999443 ATTCAAGACA
25999453 AATTAGTTACATATGCAGAAAC
1 AATTAGTT-CATATGCAGAAAC
*
25999475 AATTTTAGTTTCATATACAG-AAC
1 AA--TTAG-TTCATATGCAGAAAC
*
25999498 AGATTAAATTCATATGCAGA
1 A-ATT-AGTTCATATGCAGA
25999518 TTTTCCTAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 11
0.71 0.06 0.23
Matches are distributed among these distances:
22 14 0.41
23 5 0.15
24 13 0.38
25 2 0.06
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.32
Consensus pattern (21 bp):
AATTAGTTCATATGCAGAAAC
Found at i:26000186 original size:63 final size:63
Alignment explanation
Indices: 26000044--26000197 Score: 200
Period size: 63 Copynumber: 2.4 Consensus size: 63
26000034 CGTGTGGCTC
** *
26000044 ACACGGCCTGGGCACACTTCCATGTCCTCTGTCAGTGTGGTTCTAAAACGTAAACAGAAAGTT
1 ACACGGCCTGGGCACACACCCATGTCCTCTGCCAGTGTGGTTCTAAAACGTAAACAGAAAGTT
* * * * *
26000107 ACACAGCTTGGGCACACACCCATGTCCTCTGCCTGTGTGGTTCTAAAGCGTAAACAGAGAGTT
1 ACACGGCCTGGGCACACACCCATGTCCTCTGCCAGTGTGGTTCTAAAACGTAAACAGAAAGTT
* * * *
26000170 ACATGGCCTGGACACACGCCCGTGTCCT
1 ACACGGCCTGGGCACACACCCATGTCCT
26000198 TGCTCGAGTG
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 77 1.00
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (63 bp):
ACACGGCCTGGGCACACACCCATGTCCTCTGCCAGTGTGGTTCTAAAACGTAAACAGAAAGTT
Found at i:26003177 original size:15 final size:14
Alignment explanation
Indices: 26003153--26003188 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
26003143 ACTTTTTGTA
*
26003153 TTTTTAAATAATGT
1 TTTTTAAATAATAT
26003167 TTTTATAAATAATAT
1 TTTT-TAAATAATAT
26003182 TTTTTAA
1 TTTTTAA
26003189 TCATAATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (14 bp):
TTTTTAAATAATAT
Found at i:26004427 original size:15 final size:15
Alignment explanation
Indices: 26004407--26004435 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26004397 ATAATAAATA
26004407 TATTTTTTATTTTTT
1 TATTTTTTATTTTTT
26004422 TATTTTTTATTTTT
1 TATTTTTTATTTTT
26004436 AAAATAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (15 bp):
TATTTTTTATTTTTT
Found at i:26008449 original size:21 final size:20
Alignment explanation
Indices: 26008419--26008466 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
26008409 TTCTAGATTC
* *
26008419 TATATATATTTGAATTTTATA
1 TATATTTATTTCAATTTT-TA
*
26008440 TATATTTATTTCTATTTTTA
1 TATATTTATTTCAATTTTTA
26008460 TATATTT
1 TATATTT
26008467 TTAGTGTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (20 bp):
TATATTTATTTCAATTTTTA
Found at i:26014111 original size:12 final size:13
Alignment explanation
Indices: 26014094--26014130 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
26014084 GAACCGGACA
26014094 CGAACCGAA-CTC
1 CGAACCGAAGCTC
26014106 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
26014118 CGAACCGTAGCTC
1 CGAACCGAAGCTC
26014131 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:26020534 original size:105 final size:105
Alignment explanation
Indices: 26020342--26020951 Score: 749
Period size: 105 Copynumber: 5.8 Consensus size: 105
26020332 TTATAAATGC
* * * *
26020342 TGATTTTTCAAAGGTTAGTTGATTTAAGATCACAACTTATTCATCTTTGAGTTAGCTGATTTAAT
1 TGATTTTACAAAGGTTAGTTGATTTAAGATCGCAACCTATTCATCTTTGAGTTAGCTGATTTAAG
* ***
26020407 ATCGCAACTTCTAAATTGCTCGATGACCTACGTTCACGGT
66 ATCGCAACTCCTAAACAACTCGATGACCTACGTTCACGGT
* * * *
26020447 CGAATTTACAAAGGTTAGATGATTTAAGATTGCAACCTATTCATCTTTGAGTTAGCTGATTTAAG
1 TGATTTTACAAAGGTTAGTTGATTTAAGATCGCAACCTATTCATCTTTGAGTTAGCTGATTTAAG
* * *
26020512 ATCGCAATTTCTAAACAACTCGATGACCTACGTTTACGGT
66 ATCGCAACTCCTAAACAACTCGATGACCTACGTTCACGGT
* ** *
26020552 TGATTTTACAAAGGTTAGTTGATTTAATATCGTGACAC-ATTCATATTTGAGTTAGCTGATTTAA
1 TGATTTTACAAAGGTTAGTTGATTTAAGATCGCAAC-CTATTCATCTTTGAGTTAGCTGATTTAA
* * * * * **
26020616 GATCGCAAATCCTAAATAGCTCGACGACCTAAGTTCACAAT
65 GATCGCAACTCCTAAACAACTCGATGACCTACGTTCACGGT
*
26020657 TGATTTTACAAAGGTTAGCTGATTTAAGATCGCAACCTATTCATCTTTGAGTTAGCTGATTTAAG
1 TGATTTTACAAAGGTTAGTTGATTTAAGATCGCAACCTATTCATCTTTGAGTTAGCTGATTTAAG
* * * * * * *
26020722 ATCGCAGCTCCTAAATAGCTCGATGACCCATGTTCACAGC
66 ATCGCAACTCCTAAACAACTCGATGACCTACGTTCACGGT
* * *
26020762 T-ATTCTTACAAAGGTTAGTTGATTTAAGATCGCAACCTATCCATATTTGAGTTAGTTGATTTAA
1 TGATT-TTACAAAGGTTAGTTGATTTAAGATCGCAACCTATTCATCTTTGAGTTAGCTGATTTAA
* * * *
26020826 GATCACAGCTCCTAAACAACTCGATAACCTACGTTCACGAT
65 GATCGCAACTCCTAAACAACTCGATGACCTACGTTCACGGT
* * *
26020867 TGATTTTACAAAGGTTAGTTGATTTAATATCGCAACCTATCCAT-TTCTAAGTTAGCTGATTTAA
1 TGATTTTACAAAGGTTAGTTGATTTAAGATCGCAACCTATTCATCTT-TGAGTTAGCTGATTTAA
* **
26020931 GATCGCGACTTTTAAACAACT
65 GATCGCAACTCCTAAACAACT
26020952 TGATAATCTG
Statistics
Matches: 437, Mismatches: 63, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
104 6 0.01
105 427 0.98
106 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (105 bp):
TGATTTTACAAAGGTTAGTTGATTTAAGATCGCAACCTATTCATCTTTGAGTTAGCTGATTTAAG
ATCGCAACTCCTAAACAACTCGATGACCTACGTTCACGGT
Found at i:26020922 original size:315 final size:315
Alignment explanation
Indices: 26020342--26020936 Score: 881
Period size: 315 Copynumber: 1.9 Consensus size: 315
26020332 TTATAAATGC
* * * *
26020342 TGATTTTTCAAAGGTTAGTTGATTTAAGATCACAACTTATTCATCTTTGAGTTAGCTGATTTAAT
1 TGATTTTACAAAGGTTAGCTGATTTAAGATCACAACCTATTCATCTTTGAGTTAGCTGATTTAAG
* * * *
26020407 ATCGCAACTTCTAAATTGCTCGATGACCTACGTTCACGGTCGAATTTACAAAGGTTAGATGATTT
66 ATCGCAACTCCTAAATAGCTCGATGACCCACGTTCACAGTCGAATTTACAAAGGTTAGATGATTT
* * * * * * *
26020472 AAGATTGCAACCTATTCATCTTTGAGTTAGCTGATTTAAGATCGCAATTTCTAAACAACTCGATG
131 AAGATCGCAACCTATCCATATTTGAGTTAGCTGATTTAAGATCACAACTCCTAAACAACTCGATA
* * ** * *
26020537 ACCTACGTTTACGGTTGATTTTACAAAGGTTAGTTGATTTAATATCGTGACACATTCATATTTGA
196 ACCTACGTTCACGATTGATTTTACAAAGGTTAGTTGATTTAATATCGCAACACATCCATATTTAA
26020602 GTTAGCTGATTTAAGATCGCAAATCCTAAATAGCTCGACGACCTAAGTTCACAAT
261 GTTAGCTGATTTAAGATCGCAAATCCTAAATAGCTCGACGACCTAAGTTCACAAT
*
26020657 TGATTTTACAAAGGTTAGCTGATTTAAGATCGCAACCTATTCATCTTTGAGTTAGCTGATTTAAG
1 TGATTTTACAAAGGTTAGCTGATTTAAGATCACAACCTATTCATCTTTGAGTTAGCTGATTTAAG
* * * * *
26020722 ATCGCAGCTCCTAAATAGCTCGATGACCCATGTTCACAG-CTATTCTTACAAAGGTTAGTTGATT
66 ATCGCAACTCCTAAATAGCTCGATGACCCACGTTCACAGTCGAAT-TTACAAAGGTTAGATGATT
* *
26020786 TAAGATCGCAACCTATCCATATTTGAGTTAGTTGATTTAAGATCACAGCTCCTAAACAACTCGAT
130 TAAGATCGCAACCTATCCATATTTGAGTTAGCTGATTTAAGATCACAACTCCTAAACAACTCGAT
26020851 AACCTACGTTCACGATTGATTTTACAAAGGTTAGTTGATTTAATATCGCAAC-CTATCCAT-TTC
195 AACCTACGTTCACGATTGATTTTACAAAGGTTAGTTGATTTAATATCGCAACAC-ATCCATATT-
26020914 TAAGTTAGCTGATTTAAGATCGC
258 TAAGTTAGCTGATTTAAGATCGC
26020937 GACTTTTAAA
Statistics
Matches: 248, Mismatches: 29, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
314 6 0.02
315 242 0.98
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (315 bp):
TGATTTTACAAAGGTTAGCTGATTTAAGATCACAACCTATTCATCTTTGAGTTAGCTGATTTAAG
ATCGCAACTCCTAAATAGCTCGATGACCCACGTTCACAGTCGAATTTACAAAGGTTAGATGATTT
AAGATCGCAACCTATCCATATTTGAGTTAGCTGATTTAAGATCACAACTCCTAAACAACTCGATA
ACCTACGTTCACGATTGATTTTACAAAGGTTAGTTGATTTAATATCGCAACACATCCATATTTAA
GTTAGCTGATTTAAGATCGCAAATCCTAAATAGCTCGACGACCTAAGTTCACAAT
Found at i:26030203 original size:3 final size:3
Alignment explanation
Indices: 26030195--26030223 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
26030185 ATAAAAAACT
26030195 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
26030224 TTTTAACTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:26030856 original size:29 final size:30
Alignment explanation
Indices: 26030811--26030869 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 30
26030801 GAATTTGATC
*
26030811 AAATCAAAATTTCATGTATAAAATTACACA
1 AAATCAAAATTACATGTATAAAATTACACA
26030841 AAATCAAAA-TACATGTATAAAATTACACA
1 AAATCAAAATTACATGTATAAAATTACACA
26030870 TTAAATTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 19 0.68
30 9 0.32
ACGTcount: A:0.56, C:0.14, G:0.03, T:0.27
Consensus pattern (30 bp):
AAATCAAAATTACATGTATAAAATTACACA
Found at i:26031774 original size:27 final size:27
Alignment explanation
Indices: 26031744--26031840 Score: 83
Period size: 27 Copynumber: 3.6 Consensus size: 27
26031734 GTTAAAATTT
*
26031744 TAAAAAATTCAAAAAAAAATGAAAATA
1 TAAAAAATTCAAAAAAAAATCAAAATA
* * **
26031771 TAAAAAAATC-AAAAAAATTTTAAAT-
1 TAAAAAATTCAAAAAAAAATCAAAATA
** *
26031796 TTCAAAATTACAAAAAAAAATTCAAAAAA
1 TAAAAAATT-CAAAAAAAAA-TCAAAATA
26031825 T-AAAAATTCAAAAAAA
1 TAAAAAATTCAAAAAAA
26031841 GATATTGGCA
Statistics
Matches: 54, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
25 6 0.11
26 13 0.24
27 24 0.44
28 10 0.19
29 1 0.02
ACGTcount: A:0.71, C:0.06, G:0.01, T:0.22
Consensus pattern (27 bp):
TAAAAAATTCAAAAAAAAATCAAAATA
Found at i:26031831 original size:15 final size:14
Alignment explanation
Indices: 26031807--26031840 Score: 59
Period size: 15 Copynumber: 2.4 Consensus size: 14
26031797 TCAAAATTAC
26031807 AAAAAAAAATTCAA
1 AAAAAAAAATTCAA
26031821 AAAATAAAAATTCAA
1 AAAA-AAAAATTCAA
26031836 AAAAA
1 AAAAA
26031841 GATATTGGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.79, C:0.06, G:0.00, T:0.15
Consensus pattern (14 bp):
AAAAAAAAATTCAA
Found at i:26032102 original size:18 final size:18
Alignment explanation
Indices: 26032079--26032113 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26032069 ATTTTTTAAT
26032079 TTTTTGAATTATTATAAA
1 TTTTTGAATTATTATAAA
*
26032097 TTTTTGAATTTTTATAA
1 TTTTTGAATTATTATAA
26032114 TATATATTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (18 bp):
TTTTTGAATTATTATAAA
Found at i:26032806 original size:42 final size:42
Alignment explanation
Indices: 26032747--26032833 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
26032737 AGAACACATA
26032747 GTTTACCATGCAATAAACATGGTAGAATTACTCGTTCATCTT
1 GTTTACCATGCAATAAACATGGTAGAATTACTCGTTCATCTT
26032789 GTTTACCATGCAATAAACATGGTAGAATTACTCGTTCATCTT
1 GTTTACCATGCAATAAACATGGTAGAATTACTCGTTCATCTT
26032831 GTT
1 GTT
26032834 ACAATTGAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (42 bp):
GTTTACCATGCAATAAACATGGTAGAATTACTCGTTCATCTT
Found at i:26036144 original size:25 final size:24
Alignment explanation
Indices: 26036100--26036152 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
26036090 AATTTCAAGC
26036100 GAGCCATATCAAGAATCTCACAAA
1 GAGCCATATCAAGAATCTCACAAA
* *
26036124 GAGCCTATATCAGGACA-CTCATAAA
1 GAGCC-ATATCAAGA-ATCTCACAAA
26036149 GAGC
1 GAGC
26036153 TACGGTATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.20
25 19 0.76
26 1 0.04
ACGTcount: A:0.42, C:0.25, G:0.17, T:0.17
Consensus pattern (24 bp):
GAGCCATATCAAGAATCTCACAAA
Found at i:26036240 original size:64 final size:64
Alignment explanation
Indices: 26036129--26036250 Score: 154
Period size: 64 Copynumber: 1.9 Consensus size: 64
26036119 ACAAAGAGCC
* * * * * ** * *
26036129 TATATCAGGACACTCATAAAGAGCTACGGTATGTCTGCAGTATATGCAGGATCCATACCGATCA
1 TATAACAGGACACTCACAAAGAGCTACGATATGACCGCAACACATGCAGGATCAATACCGATCA
*
26036193 TATAACAGGACGCTCACAAAGAGCTACGATATGACCGCAACACATGCAGGATCAATAC
1 TATAACAGGACACTCACAAAGAGCTACGATATGACCGCAACACATGCAGGATCAATAC
26036251 AGATTAGGAT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
64 48 1.00
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (64 bp):
TATAACAGGACACTCACAAAGAGCTACGATATGACCGCAACACATGCAGGATCAATACCGATCA
Found at i:26046756 original size:26 final size:26
Alignment explanation
Indices: 26046716--26046788 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
26046706 AACTTTCTCG
* *
26046716 AAATTTTATCGAGGGTAAAATCGTC-A
1 AAATTTTA-CAAGGGTAAAATCGCCAA
*
26046742 AAATTTTACCAAGGGTAAAATTGCCAA
1 AAATTTTA-CAAGGGTAAAATCGCCAA
* *
26046769 AAACTTTACTAGGGTAAAAT
1 AAATTTTACAAGGGTAAAAT
26046789 TGGGATGAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
26 32 0.80
27 8 0.20
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.29
Consensus pattern (26 bp):
AAATTTTACAAGGGTAAAATCGCCAA
Found at i:26049492 original size:34 final size:34
Alignment explanation
Indices: 26049454--26049641 Score: 214
Period size: 34 Copynumber: 5.5 Consensus size: 34
26049444 TTACAGTGGT
* * * *
26049454 ATTTGGTGTGCTAGATAGATTAGTTAATACGAGC
1 ATTTGGTGTGCTGGATGGATTAGCTCATACGAGC
* * *
26049488 ATTTGGTATGTTGGATGGATTAGCTCATATGAGC
1 ATTTGGTGTGCTGGATGGATTAGCTCATACGAGC
* * *
26049522 ATTTGCTGTGCTAGATGAATTAGCTCATACGAGC
1 ATTTGGTGTGCTGGATGGATTAGCTCATACGAGC
* * * * *
26049556 ATTTGCTGTGCTGGATTGATTAGCTTATATGAAC
1 ATTTGGTGTGCTGGATGGATTAGCTCATACGAGC
*
26049590 ATTTGGTGTGCTGGATGGATTAGCTCATACGAGA
1 ATTTGGTGTGCTGGATGGATTAGCTCATACGAGC
* *
26049624 ATCTGGTGTGTTGGATGG
1 ATTTGGTGTGCTGGATGG
26049642 TTAACTGTGT
Statistics
Matches: 127, Mismatches: 27, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 127 1.00
ACGTcount: A:0.24, C:0.11, G:0.29, T:0.36
Consensus pattern (34 bp):
ATTTGGTGTGCTGGATGGATTAGCTCATACGAGC
Found at i:26049537 original size:68 final size:67
Alignment explanation
Indices: 26049454--26049641 Score: 241
Period size: 68 Copynumber: 2.8 Consensus size: 67
26049444 TTACAGTGGT
* * *
26049454 ATTTGGTGTGCTAGATAGATTAGTTAATACGAGCATTTGGTATGTTGGATGGATTAGCTCATATG
1 ATTTGGTGTGCTAGAT-GATTAGCTCATACGAGCATTTGGTGTGTTGGATGGATTAGCTCATATG
*
26049519 AGC
65 AAC
* * * * *
26049522 ATTTGCTGTGCTAGATGAATTAGCTCATACGAGCATTTGCTGTGCTGGATTGATTAGCTTATATG
1 ATTTGGTGTGCTAGATG-ATTAGCTCATACGAGCATTTGGTGTGTTGGATGGATTAGCTCATATG
26049587 AAC
65 AAC
* * *
26049590 ATTTGGTGTGCTGGATGGATTAGCTCATACGAGAATCTGGTGTGTTGGATGG
1 ATTTGGTGTGCTAGAT-GATTAGCTCATACGAGCATTTGGTGTGTTGGATGG
26049642 TTAACTGTGT
Statistics
Matches: 102, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
67 1 0.01
68 100 0.98
69 1 0.01
ACGTcount: A:0.24, C:0.11, G:0.29, T:0.36
Consensus pattern (67 bp):
ATTTGGTGTGCTAGATGATTAGCTCATACGAGCATTTGGTGTGTTGGATGGATTAGCTCATATGA
AC
Found at i:26054123 original size:27 final size:27
Alignment explanation
Indices: 26054093--26054266 Score: 197
Period size: 27 Copynumber: 6.4 Consensus size: 27
26054083 TGAGTCCGCT
* * * *
26054093 CACTCAGTGCTATATAATCAACTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* *
26054120 CACTTAGTGCTACGTAATCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
26054147 CACTTAGTGCTACATAGTCAAACTCGCA
1 CACTTAGTGCTACATAGTCAAA-TCGCA
** * *
26054175 CACTTAGTGCCGCATGGTCAATTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* **
26054202 CACTTAGTGC-ATCATATTCATTTCGCA
1 CACTTAGTGCTA-CATAGTCAAATCGCA
*
26054229 CACTTAGTGCAACATAGTCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
26054256 CACTTAGTGCT
1 CACTTAGTGCT
26054267 GTACAATTTA
Statistics
Matches: 126, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CACTTAGTGCTACATAGTCAAATCGCA
Found at i:26054235 original size:82 final size:81
Alignment explanation
Indices: 26054110--26054265 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26054100 TGCTATATAA
* *
26054110 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26054175 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26054192 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26054256 CACTTAGTGC
65 CACTTAGTGC
26054266 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26082741 original size:26 final size:26
Alignment explanation
Indices: 26082684--26082838 Score: 161
Period size: 26 Copynumber: 5.8 Consensus size: 26
26082674 AAATTGTACA
*
26082684 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGAATATG-T
*
26082711 GCACTAAGTGTGCGA-ATGAATATGAT
1 GCACTAAGTGTGCGATTTGAATATG-T
* * *
26082737 GCACTAAGTGTGCGAATTG-ACATGCG
1 GCACTAAGTGTGCGATTTGAATATG-T
*
26082763 GCACTAAGTGTGCGAGTTTGACTATGT
1 GCACTAAGTGTGCGA-TTTGAATATGT
*
26082790 AGCACTAAGTGTGCGATTTGAATTACGT
1 -GCACTAAGTGTGCGATTTGAA-TATGT
*
26082818 AGCACTAAGTGTGCGAGTTGA
1 -GCACTAAGTGTGCGATTTGA
26082839 TTATATAGCA
Statistics
Matches: 109, Mismatches: 14, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
26 42 0.39
27 25 0.23
28 42 0.39
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTTGAATATGT
Found at i:26082803 original size:28 final size:27
Alignment explanation
Indices: 26082683--26082860 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
26082673 AAAATTGTAC
26082683 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26082710 TGCACTAAGTGTGCGA-ATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
26082735 ATGCACTAAGTGTGCGAATTGAC-ATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26082762 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26082790 AGCACTAAGTGTGCGATTTGAATTACGT
1 AGCACTAAGTGTGCGATTTG-ACTATGT
* * *
26082818 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
26082845 AGCACTGAGTGAGCGA
1 AGCACTAAGTGTGCGA
26082861 CTCAATATAC
Statistics
Matches: 128, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
26 40 0.31
27 46 0.36
28 42 0.33
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26087968 original size:33 final size:33
Alignment explanation
Indices: 26087917--26087985 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
26087907 GGGTTTGGGC
* *
26087917 AAAATCATTAGGCCCGAAAAATGGGCTTGAGCA
1 AAAATCATTAAGCACGAAAAATGGGCTTGAGCA
* * *
26087950 AAAATTATTAAGCACGAAACATGGGCTTGGGCA
1 AAAATCATTAAGCACGAAAAATGGGCTTGAGCA
26087983 AAA
1 AAA
26087986 TAATTAGGCC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.19
Consensus pattern (33 bp):
AAAATCATTAAGCACGAAAAATGGGCTTGAGCA
Found at i:26091763 original size:16 final size:16
Alignment explanation
Indices: 26091733--26091765 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26091723 GTGATATGTG
26091733 ATAAAAAAATATATAA
1 ATAAAAAAATATATAA
26091749 ATAATAAAAAT-TATAA
1 ATAA-AAAAATATATAA
26091765 A
1 A
26091766 AATTATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
ATAAAAAAATATATAA
Found at i:26091793 original size:21 final size:22
Alignment explanation
Indices: 26091763--26091808 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
26091753 TAAAAATTAT
*
26091763 AAAAATTATT-AAATTTTAATA
1 AAAAAATATTAAAATTTTAATA
*
26091784 AAAAAATATTAAAATTTTATTA
1 AAAAAATATTAAAATTTTAATA
26091806 AAA
1 AAA
26091809 TCAGAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAAAATATTAAAATTTTAATA
Found at i:26092023 original size:9 final size:9
Alignment explanation
Indices: 26092009--26092256 Score: 51
Period size: 9 Copynumber: 26.2 Consensus size: 9
26091999 TTTTGGTACG
26092009 ATAATTTTT
1 ATAATTTTT
26092018 ATAATTTTTT
1 ATAA-TTTTT
26092028 ATGAA-TTTT
1 AT-AATTTTT
*
26092037 ATATTTCTTT
1 ATAATT-TTT
* *
26092047 ACATTTTTT
1 ATAATTTTT
* * *
26092056 GT-ACTTCT
1 ATAATTTTT
* * *
26092064 CTACTTTAT
1 ATAATTTTT
*
26092073 AAAATT-TT
1 ATAATTTTT
26092081 ATAATTTTTT
1 ATAA-TTTTT
* *
26092091 CTATATTTCT
1 ATA-ATTTTT
*
26092101 ATATTTTTT
1 ATAATTTTT
26092110 A-AATTTTTT
1 ATAA-TTTTT
*
26092119 ATGATTTTT
1 ATAATTTTT
*
26092128 AT-TTTTATT
1 ATAATTT-TT
*
26092137 TTAAGATTTTT
1 AT-A-ATTTTT
*
26092148 ATATTTTTT
1 ATAATTTTT
*
26092157 ATGATTTTT
1 ATAATTTTT
*
26092166 ATAAAAAATTTT
1 AT---AATTTTT
*
26092178 CTAATTTTT
1 ATAATTTTT
*
26092187 AATAAATTTT
1 -ATAATTTTT
26092197 A-AATGTTTTT
1 ATAA--TTTTT
26092207 ATATATTTCTT
1 ATA-ATTT-TT
* *
26092218 A-AAATTTA
1 ATAATTTTT
26092226 ATAATTTTTT
1 ATAA-TTTTT
*
26092236 ATAACTTTT
1 ATAATTTTT
*
26092245 ATTGATTTTT
1 A-TAATTTTT
26092255 AT
1 AT
26092257 TTTTATTTTT
Statistics
Matches: 169, Mismatches: 44, Indels: 52
0.64 0.17 0.20
Matches are distributed among these distances:
8 17 0.10
9 75 0.44
10 57 0.34
11 10 0.06
12 10 0.06
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.62
Consensus pattern (9 bp):
ATAATTTTT
Found at i:26092090 original size:10 final size:10
Alignment explanation
Indices: 26092077--26092244 Score: 61
Period size: 10 Copynumber: 17.2 Consensus size: 10
26092067 CTTTATAAAA
26092077 TTTTATAATT
1 TTTTATAATT
*
26092087 TTTTCT-ATAT
1 TTTTATAAT-T
*
26092097 TTCTAT-ATT
1 TTTTATAATT
26092106 TTTTA-AATT
1 TTTTATAATT
*
26092115 TTTTATGA-T
1 TTTTATAATT
26092124 TTTTAT--TT
1 TTTTATAATT
* *
26092132 TTATTTTAAGAT
1 TT-TTATAA-TT
26092144 TTTTAT-ATT
1 TTTTATAATT
*
26092153 TTTTATGATT
1 TTTTATAATT
* **
26092163 TTTATAAAAAA
1 TTT-TATAATT
*
26092174 TTTTCTAATT
1 TTTTATAATT
* *
26092184 TTTAATAA-A
1 TTTTATAATT
26092193 TTTTA-AATGT
1 TTTTATAAT-T
26092203 TTTTATATATT
1 TTTTATA-ATT
* *
26092214 TCTTA-AA-A
1 TTTTATAATT
*
26092222 TTTAATAATT
1 TTTTATAATT
26092232 TTTTATAACTT
1 TTTTATAA-TT
26092243 TT
1 TT
26092245 ATTGATTTTT
Statistics
Matches: 113, Mismatches: 28, Indels: 33
0.65 0.16 0.19
Matches are distributed among these distances:
8 8 0.07
9 39 0.35
10 42 0.37
11 19 0.17
12 5 0.04
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTTATAATT
Found at i:26092106 original size:27 final size:27
Alignment explanation
Indices: 26092076--26092135 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
26092066 ACTTTATAAA
*
26092076 ATTTTATAATTTTTTCTAT-ATTTCTAT
1 ATTTTATAAATTTTT-TATGATTTCTAT
* *
26092103 ATTTTTTAAATTTTTTATGATTTTTAT
1 ATTTTATAAATTTTTTATGATTTCTAT
26092130 -TTTTAT
1 ATTTTAT
26092136 TTTAAGATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.25, C:0.03, G:0.02, T:0.70
Consensus pattern (27 bp):
ATTTTATAAATTTTTTATGATTTCTAT
Found at i:26092126 original size:38 final size:38
Alignment explanation
Indices: 26092077--26092167 Score: 105
Period size: 38 Copynumber: 2.4 Consensus size: 38
26092067 CTTTATAAAA
* *
26092077 TTTTATAATTTTT-TCTATATTTCTATA-TTTTTTAAATT
1 TTTTATGATTTTTATCTATATTT-TA-AGATTTTTAAATT
* * *
26092115 TTTTATGATTTTTATTTTTATTTTAAGATTTTTATATT
1 TTTTATGATTTTTATCTATATTTTAAGATTTTTAAATT
26092153 TTTTATGATTTTTAT
1 TTTTATGATTTTTAT
26092168 AAAAAATTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
37 1 0.02
38 38 0.83
39 7 0.15
ACGTcount: A:0.24, C:0.02, G:0.03, T:0.70
Consensus pattern (38 bp):
TTTTATGATTTTTATCTATATTTTAAGATTTTTAAATT
Found at i:26092900 original size:30 final size:28
Alignment explanation
Indices: 26092845--26092901 Score: 78
Period size: 30 Copynumber: 2.0 Consensus size: 28
26092835 AATTGTAGAA
*
26092845 TAAATTGTAAATTTTGAGATATAGGGAC
1 TAAATTGTAAATTTTGAAATATAGGGAC
*
26092873 TAAATTGTGAAATTTTTGAAATTTAGGGA
1 TAAATTGT-AAA-TTTTGAAATATAGGGA
26092902 TTTAAGTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 8 0.32
29 3 0.12
30 14 0.56
ACGTcount: A:0.39, C:0.02, G:0.21, T:0.39
Consensus pattern (28 bp):
TAAATTGTAAATTTTGAAATATAGGGAC
Found at i:26092918 original size:18 final size:19
Alignment explanation
Indices: 26092889--26092924 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26092879 GTGAAATTTT
*
26092889 TGAAATTTAGGGATTTAAG
1 TGAAATTTAGGGAGTTAAG
26092908 TGAAA-TTAGGGAGTTAA
1 TGAAATTTAGGGAGTTAA
26092925 ATCTAGCCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.39, C:0.00, G:0.28, T:0.33
Consensus pattern (19 bp):
TGAAATTTAGGGAGTTAAG
Found at i:26099361 original size:32 final size:31
Alignment explanation
Indices: 26099325--26099385 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
26099315 GTGCAAAATC
* *
26099325 TAAAACAATATTAACAACTAATTAAAATAAAA
1 TAAAACAATAATAACAA-TAATAAAAATAAAA
*
26099357 TAAAATAATAATAACAATAATAAAAATAA
1 TAAAACAATAATAACAATAATAAAAATAA
26099386 TTAACTAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 11 0.42
32 15 0.58
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.25
Consensus pattern (31 bp):
TAAAACAATAATAACAATAATAAAAATAAAA
Found at i:26102053 original size:39 final size:39
Alignment explanation
Indices: 26102001--26102079 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
26101991 CACATTCTGC
26102001 CAACATAGACACAATACATGGGTGGTCATTACCCGCCAA
1 CAACATAGACACAATACATGGGTGGTCATTACCCGCCAA
26102040 CAACATAGACACAATACATGGGTGGTCATTACCCGCCAA
1 CAACATAGACACAATACATGGGTGGTCATTACCCGCCAA
26102079 C
1 C
26102080 TTAACCATGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.35, C:0.29, G:0.18, T:0.18
Consensus pattern (39 bp):
CAACATAGACACAATACATGGGTGGTCATTACCCGCCAA
Found at i:26106344 original size:27 final size:28
Alignment explanation
Indices: 26106306--26106358 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
26106296 AAACAATTTC
26106306 AAGTCATAAAATAT-TTTGAAAACAACT
1 AAGTCATAAAATATATTTGAAAACAACT
* *
26106333 AAGTGCAT-AAATTTATTTGAACACAA
1 AAGT-CATAAAATATATTTGAAAACAA
26106359 AATCAAGGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.30
Consensus pattern (28 bp):
AAGTCATAAAATATATTTGAAAACAACT
Found at i:26116446 original size:14 final size:14
Alignment explanation
Indices: 26116427--26116530 Score: 50
Period size: 14 Copynumber: 7.3 Consensus size: 14
26116417 TATCATTATA
26116427 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
**
26116441 GTTTAGGAG-TTACT
1 GTTTAGG-GTTTAAG
* * *
26116455 ATCTTAAGGTTTATG
1 GT-TTAGGGTTTAAG
* *
26116470 GATTATGGGTTTAGG
1 GTTTA-GGGTTTAAG
* * *
26116485 GATTATGGTTTATG
1 GTTTAGGGTTTAAG
*
26116499 GTTTATGGTTTAAG
1 GTTTAGGGTTTAAG
*
26116513 GGTT-GTGGTTTAAG
1 GTTTAG-GGTTTAAG
26116527 GTTT
1 GTTT
26116531 TGGGGTTAGG
Statistics
Matches: 68, Mismatches: 17, Indels: 10
0.72 0.18 0.11
Matches are distributed among these distances:
14 48 0.71
15 20 0.29
ACGTcount: A:0.20, C:0.02, G:0.32, T:0.46
Consensus pattern (14 bp):
GTTTAGGGTTTAAG
Found at i:26116477 original size:7 final size:7
Alignment explanation
Indices: 26116462--26116530 Score: 66
Period size: 7 Copynumber: 9.7 Consensus size: 7
26116452 ACTATCTTAA
26116462 GGTTTAT
1 GGTTTAT
*
26116469 GGATTAT
1 GGTTTAT
*
26116476 GGGTTTAG
1 -GGTTTAT
*
26116484 GGATTAT
1 GGTTTAT
26116491 GGTTTAT
1 GGTTTAT
26116498 GGTTTAT
1 GGTTTAT
*
26116505 GGTTTAA
1 GGTTTAT
* *
26116512 GGGTTGT
1 GGTTTAT
*
26116519 GGTTTAA
1 GGTTTAT
26116526 GGTTT
1 GGTTT
26116531 TGGGGTTAGG
Statistics
Matches: 48, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
7 43 0.90
8 5 0.10
ACGTcount: A:0.17, C:0.00, G:0.35, T:0.48
Consensus pattern (7 bp):
GGTTTAT
Found at i:26116551 original size:38 final size:39
Alignment explanation
Indices: 26116508--26116581 Score: 96
Period size: 39 Copynumber: 1.9 Consensus size: 39
26116498 GGTTTATGGT
* * *
26116508 TTAAGGGTT-GTGGTTTAAGGTTTTGGGGTTAGGGGTAC
1 TTAAGGGTTAGGGGTTTAAGATTTAGGGGTTAGGGGTAC
* *
26116546 TTAAGGGTTAGGGGTTTATGATTTAGGGTTTAGGGG
1 TTAAGGGTTAGGGGTTTAAGATTTAGGGGTTAGGGG
26116582 ATAGGAGATA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
38 9 0.30
39 21 0.70
ACGTcount: A:0.18, C:0.01, G:0.42, T:0.39
Consensus pattern (39 bp):
TTAAGGGTTAGGGGTTTAAGATTTAGGGGTTAGGGGTAC
Found at i:26117978 original size:86 final size:86
Alignment explanation
Indices: 26117831--26118109 Score: 380
Period size: 86 Copynumber: 3.2 Consensus size: 86
26117821 TCCTTCTACT
* * * **
26117831 TTATAAAAGTTGAAAATTTGGTCTGGTTGTTGGTGAATGCATGAACTTGAACTGTTGATTTTTTC
1 TTATAAAAATTGAAAATTTAGTCTGGTTGTTGGTAAATGCATGAACTTGAACCATTGATTTTTTC
*
26117896 TAATTTGTTGCACATTAGTTG
66 TAATTTGTTGCACATAAGTTG
*
26117917 TTATAAAAATTGAAAATTTAGTCTGGTTGTTGGTAAATGCATGAACTTGAACCATTTATTTTTTC
1 TTATAAAAATTGAAAATTTAGTCTGGTTGTTGGTAAATGCATGAACTTGAACCATTGATTTTTTC
*
26117982 TAATTTGTTGCATATAAGTTG
66 TAATTTGTTGCACATAAGTTG
* * * * * *
26118003 TTATAAATATTGAAAAATTAGTCTGATTTTTGGTAAATACATGAACTTGAACCATTGATTTTTGC
1 TTATAAAAATTGAAAATTTAGTCTGGTTGTTGGTAAATGCATGAACTTGAACCATTGATTTTTTC
* *
26118068 TAATTTGTTGCATATAAATCT-
66 TAATTTGTTGCACATAAGT-TG
* *
26118089 TTATAGAAATTGAAGATTTAG
1 TTATAAAAATTGAAAATTTAG
26118110 CCCTATTGCG
Statistics
Matches: 172, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
86 171 0.99
87 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (86 bp):
TTATAAAAATTGAAAATTTAGTCTGGTTGTTGGTAAATGCATGAACTTGAACCATTGATTTTTTC
TAATTTGTTGCACATAAGTTG
Found at i:26118124 original size:86 final size:85
Alignment explanation
Indices: 26117831--26118187 Score: 351
Period size: 86 Copynumber: 4.1 Consensus size: 85
26117821 TCCTTCTACT
* * * * ** *
26117831 TTATAAAAGTTGAAAATTTGGTCTGGTTGTTGGTGAATGCATGAACTTGAACTGTTGATTTTTTC
1 TTATAAAA-TTGAAAATTTAGTCTGATTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGC
* *
26117896 TAATTTGTTGCACATTAGTTG
65 TAATTTGTTGCACATAAATTG
* * * *
26117917 TTATAAAAATTGAAAATTTAGTCTGGTTGTTGGTAAATGCATGAACTTGAACCATTTATTTTTTC
1 TTAT-AAAATTGAAAATTTAGTCTGATTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGC
* *
26117982 TAATTTGTTGCATATAAGTTG
65 TAATTTGTTGCACATAAATTG
* *
26118003 TTATAAATATTGAAAAATTAGTCTGATTTTTGGTAAATACATGAACTTGAACCATTGATTTTTGC
1 TTATAAA-ATTGAAAATTTAGTCTGATTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGC
*
26118068 TAATTTGTTGCATATAAATCT-
65 TAATTTGTTGCACATAAAT-TG
* * ** * * *
26118089 TTATAGAAATTGAAGATTTAGCCCT-ATTGCGGGTAAATATATGAACTATGAA-TAGTTGATTTG
1 TTATA-AAATTGAAAATTTAG-TCTGATTGTTGGTAAATACATGAACT-TGAACCA-TTGATTTT
* * *
26118152 TGCTATTTTGTTTCACATAAACTG
62 TGCTAATTTGTTGCACATAAATTG
* *
26118176 TTGTAAGATTGA
1 TTATAAAATTGA
26118188 TTTTTGATAA
Statistics
Matches: 234, Mismatches: 29, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
85 3 0.01
86 189 0.81
87 42 0.18
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.43
Consensus pattern (85 bp):
TTATAAAATTGAAAATTTAGTCTGATTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGCT
AATTTGTTGCACATAAATTG
Found at i:26118268 original size:40 final size:40
Alignment explanation
Indices: 26118184--26118260 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
26118174 TGTTGTAAGA
* *
26118184 TTGATTTTTGATAATTTCTTGCATATAAATTATTGAAATG
1 TTGATTTTTGATAATTGCTTACATATAAATTATTGAAATG
26118224 TTGATTTTTGATAATTGCTTACATATTAAA-TATTGAA
1 TTGATTTTTGATAATTGCTTACATA-TAAATTATTGAA
26118261 GTTTTGATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 30 0.88
41 4 0.12
ACGTcount: A:0.34, C:0.05, G:0.12, T:0.49
Consensus pattern (40 bp):
TTGATTTTTGATAATTGCTTACATATAAATTATTGAAATG
Found at i:26121536 original size:43 final size:43
Alignment explanation
Indices: 26121487--26121861 Score: 361
Period size: 43 Copynumber: 8.7 Consensus size: 43
26121477 TCCATAAATG
* *
26121487 CCGCTAAAGAACA-GTACTTTTAGCGGCGTTTGTGGGTAAAGCA
1 CCGCTAAAGATCATGTTC-TTTAGCGGCGTTTGTGGGTAAAGCA
* * *
26121530 CCGCTAAAGATCATGTTCTTTAGCAGTGTTTG-GTGGTAAAGCG
1 CCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTG-GGTAAAGCA
* * *
26121573 CCGCTAAAGGTCATGTTCTTTAGCGGCATTTGTGGGTAAAGCG
1 CCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGTAAAGCA
* * *
26121616 CCGCTAAAGGTCATGTTCTTTAGCGGCATTTGTGGGTAAAGCG
1 CCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGTAAAGCA
* * * *
26121659 CCGCTAAA-AGTCATGATCTATAGCAGCGTTTGTGGGAAAAGCA
1 CCGCTAAAGA-TCATGTTCTTTAGCGGCGTTTGTGGGTAAAGCA
* *
26121702 CCGCTAAA-AGTCATGTT-TTATAACGGCGTTTGTGGGAAAAGCA
1 CCGCTAAAGA-TCATGTTCTT-TAGCGGCGTTTGTGGGTAAAGCA
* * * * *
26121745 TCGCTAAA-AGTCATGATCTATAGCGGCGTTTGTGGGAAAAGCG
1 CCGCTAAAGA-TCATGTTCTTTAGCGGCGTTTGTGGGTAAAGCA
* * * *
26121788 CCACTAAA-AGTCATGATCTATAGCGGCGTTTGTGGGAAAAGCA
1 CCGCTAAAGA-TCATGTTCTTTAGCGGCGTTTGTGGGTAAAGCA
* * *
26121831 CTGCTATAAG-TCATGATCTATAGCGGCGTTT
1 CCGCTA-AAGATCATGTTCTTTAGCGGCGTTT
26121862 ATTTTTAAAA
Statistics
Matches: 294, Mismatches: 30, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
42 2 0.01
43 285 0.97
44 7 0.02
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (43 bp):
CCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGTAAAGCA
Found at i:26121631 original size:86 final size:86
Alignment explanation
Indices: 26121507--26121861 Score: 446
Period size: 86 Copynumber: 4.1 Consensus size: 86
26121497 ACAGTACTTT
* * *
26121507 TAGCGGCGTTTGTGGGTAAAGCACCGCT-AAAGATCATGTTCTTTAGCAGTGTTTG-GTGGTAAA
1 TAGCGGCGTTTGTGGGAAAAGCACCGCTAAAAG-TCATGTTCTTTAGCGGCGTTTGTG-GGTAAA
* * *
26121570 GCGCCGCTAAAGGTCATGTTCTT
64 GCGCCGCTAAAAGTCATGATCTA
* * * * *
26121593 TAGCGGCATTTGTGGGTAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCATTTGTGGGTAAAGC
1 TAGCGGCGTTTGTGGGAAAAGCACCGCTAAAAGTCATGTTCTTTAGCGGCGTTTGTGGGTAAAGC
26121658 GCCGCTAAAAGTCATGATCTA
66 GCCGCTAAAAGTCATGATCTA
* * *
26121679 TAGCAGCGTTTGTGGGAAAAGCACCGCTAAAAGTCATGTT-TTATAACGGCGTTTGTGGGAAAAG
1 TAGCGGCGTTTGTGGGAAAAGCACCGCTAAAAGTCATGTTCTT-TAGCGGCGTTTGTGGGTAAAG
**
26121743 CATCGCTAAAAGTCATGATCTA
65 CGCCGCTAAAAGTCATGATCTA
* * * * *
26121765 TAGCGGCGTTTGTGGGAAAAGCGCCACTAAAAGTCATGATCTATAGCGGCGTTTGTGGGAAAAGC
1 TAGCGGCGTTTGTGGGAAAAGCACCGCTAAAAGTCATGTTCTTTAGCGGCGTTTGTGGGTAAAGC
* * *
26121830 ACTGCTATAAGTCATGATCTA
66 GCCGCTAAAAGTCATGATCTA
26121851 TAGCGGCGTTT
1 TAGCGGCGTTT
26121862 ATTTTTAAAA
Statistics
Matches: 237, Mismatches: 28, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
85 2 0.01
86 230 0.97
87 5 0.02
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (86 bp):
TAGCGGCGTTTGTGGGAAAAGCACCGCTAAAAGTCATGTTCTTTAGCGGCGTTTGTGGGTAAAGC
GCCGCTAAAAGTCATGATCTA
Found at i:26121858 original size:129 final size:128
Alignment explanation
Indices: 26121507--26121861 Score: 453
Period size: 129 Copynumber: 2.8 Consensus size: 128
26121497 ACAGTACTTT
* * * * *
26121507 TAGCGGCGTTTGTGGGTAAAGCACCGCT-AAAGATCATGTTCTTTAGCAGTGTTTG-GTGGTAAA
1 TAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAAG-TCATGATCTATAGCAGCGTTTGTG-GGAAAA
* * * * * * *
26121570 GCGCCGCTAAAGGTCATGTTCTTTAGCGGCATTTGTGGGTAAAGCGCCGCTAAAGGTCATGTTCT
64 GCACCGCTAAA-GTCATGTTCTATAGCGGCGTTTGTGGGAAAAGCACCGCTAAAAGTCATGATCT
*
26121635 T
128 A
*
26121636 TAGCGGCATTTGTGGGTAAAGCGCCGCTAAAAGTCATGATCTATAGCAGCGTTTGTGGGAAAAGC
1 TAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAAGTCATGATCTATAGCAGCGTTTGTGGGAAAAGC
* * *
26121701 ACCGCTAAAAGTCATGTTTTATAACGGCGTTTGTGGGAAAAGCATCGCTAAAAGTCATGATCTA
66 ACCGCT-AAAGTCATGTTCTATAGCGGCGTTTGTGGGAAAAGCACCGCTAAAAGTCATGATCTA
* * *
26121765 TAGCGGCGTTTGTGGGAAAAGCGCCACTAAAAGTCATGATCTATAGCGGCGTTTGTGGGAAAAGC
1 TAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAAGTCATGATCTATAGCAGCGTTTGTGGGAAAAGC
* *
26121830 ACTGCTATAAGTCATGATCTATAGCGGCGTTT
66 ACCGCTA-AAGTCATGTTCTATAGCGGCGTTT
26121862 ATTTTTAAAA
Statistics
Matches: 197, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
128 1 0.01
129 188 0.95
130 8 0.04
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (128 bp):
TAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAAGTCATGATCTATAGCAGCGTTTGTGGGAAAAGC
ACCGCTAAAGTCATGTTCTATAGCGGCGTTTGTGGGAAAAGCACCGCTAAAAGTCATGATCTA
Found at i:26127045 original size:26 final size:26
Alignment explanation
Indices: 26127015--26127090 Score: 84
Period size: 26 Copynumber: 2.9 Consensus size: 26
26127005 TCTCATCCCT
*
26127015 ATTTTACCCTC-GATAATATTTTGATG
1 ATTTTACCC-CAGATAAAATTTTGATG
**
26127041 ATTTTACCCCAGATAAAATTTTGACA
1 ATTTTACCCCAGATAAAATTTTGATG
*
26127067 ATTTTGCCCCA-AGTAAAATTTTGA
1 ATTTTACCCCAGA-TAAAATTTTGA
26127091 AAAAATATGT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
25 2 0.05
26 42 0.95
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (26 bp):
ATTTTACCCCAGATAAAATTTTGATG
Found at i:26129051 original size:26 final size:26
Alignment explanation
Indices: 26129012--26129091 Score: 124
Period size: 26 Copynumber: 3.1 Consensus size: 26
26129002 ATGGTGGTCT
* * *
26129012 TTACGGACTAATACTTGAAATAGTCC
1 TTACGGACTCATACATGGAATAGTCC
*
26129038 TTACAGACTCATACATGGAATAGTCC
1 TTACGGACTCATACATGGAATAGTCC
26129064 TTACGGACTCATACATGGAATAGTCC
1 TTACGGACTCATACATGGAATAGTCC
26129090 TT
1 TT
26129092 GTGGAGTCTT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (26 bp):
TTACGGACTCATACATGGAATAGTCC
Found at i:26131735 original size:42 final size:41
Alignment explanation
Indices: 26131581--26131736 Score: 149
Period size: 42 Copynumber: 3.7 Consensus size: 41
26131571 TATGTTATCG
*
26131581 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGAGATTTA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT--GATTCA
* * ** *
26131623 TGTATAAGACCATGTCTGGGACATCAGCATC-ATATTTGATTTCG
1 TG--TAAGACCACGTCTGGGACGTTGGCATCGATA-TTGA-TTCA
26131667 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTGATT-CA
26131709 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
26131737 TGTCCGATTT
Statistics
Matches: 92, Mismatches: 11, Indels: 22
0.74 0.09 0.18
Matches are distributed among these distances:
41 3 0.03
42 52 0.57
43 8 0.09
44 27 0.29
45 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTGATTCA
Done.