Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 90 of 218
Found at i:26135120 original size:20 final size:20
Alignment explanation
Indices: 26135095--26135134 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
26135085 ACATCAATGC
26135095 CCCTTTGGTAATTAGATATG
1 CCCTTTGGTAATTAGATATG
26135115 CCCTTTGGTAATTAGATATG
1 CCCTTTGGTAATTAGATATG
26135135 GTACTTCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (20 bp):
CCCTTTGGTAATTAGATATG
Found at i:26139645 original size:24 final size:24
Alignment explanation
Indices: 26139613--26139659 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
26139603 TTATAAATAA
26139613 CATTCAACAAAGGGAGGTAATTAG
1 CATTCAACAAAGGGAGGTAATTAG
*
26139637 CATTCAACAAAGGGAGGTTATTA
1 CATTCAACAAAGGGAGGTAATTA
26139660 CTTATTAGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.23
Consensus pattern (24 bp):
CATTCAACAAAGGGAGGTAATTAG
Found at i:26139939 original size:19 final size:19
Alignment explanation
Indices: 26139915--26139968 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
26139905 AATCTTCAAG
*
26139915 GATATGCAATCTTAGTTAT
1 GATATGCAATCTTAGATAT
26139934 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26139953 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
26139969 AGATATGACT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:26139994 original size:22 final size:22
Alignment explanation
Indices: 26139931--26139991 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 22
26139921 CAATCTTAGT
*
26139931 TATGATATGCAAT-CT--TAGA
1 TATGATATGCAATCCTAGAAGA
*
26139950 TATGATATGCAATCTTAGAAGA
1 TATGATATGCAATCCTAGAAGA
* *
26139972 TATGACTTTGTAATCCTAGA
1 TATGA-TATGCAATCCTAGA
26139992 GATTTAATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
19 13 0.39
20 1 0.03
22 8 0.24
23 11 0.33
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (22 bp):
TATGATATGCAATCCTAGAAGA
Found at i:26140591 original size:36 final size:36
Alignment explanation
Indices: 26140516--26140591 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
26140506 CATACATACG
*
26140516 TTTTATAATATATACATATACGTACACATTTTTTAAT
1 TTTTATAATATATACATATACG-ACACATTTTATAAT
* *
26140553 TTTTATAA-ATATATATATAC-ACATACTTTTATATAT
1 TTTTATAATATATACATATACGACACA-TTTTATA-AT
26140589 TTT
1 TTT
26140592 CTATGTTTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 4 0.12
35 6 0.18
36 16 0.47
37 8 0.24
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.51
Consensus pattern (36 bp):
TTTTATAATATATACATATACGACACATTTTATAAT
Found at i:26142384 original size:11 final size:11
Alignment explanation
Indices: 26142370--26142400 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
26142360 TAAAAAAAGT
26142370 ATTTTAAAAAC
1 ATTTTAAAAAC
*
26142381 ATTTTAAAAAT
1 ATTTTAAAAAC
26142392 ATTTTAAAA
1 ATTTTAAAA
26142401 TTAAAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (11 bp):
ATTTTAAAAAC
Found at i:26142426 original size:41 final size:40
Alignment explanation
Indices: 26142381--26142458 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 40
26142371 TTTTAAAAAC
26142381 ATTTTAAAAATATTTTAAAATTAAAAAATAATAAAAAAAGT
1 ATTTTAAAAATATTTTAAAATTAAAAAA-AATAAAAAAAGT
*
26142422 ATTTTAAAAATATTTTAAAATTAAAAAAATTAAAAAA
1 ATTTTAAAAATATTTTAAAATTAAAAAAAATAAAAAA
26142459 TAAATATATT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
40 8 0.22
41 28 0.78
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (40 bp):
ATTTTAAAAATATTTTAAAATTAAAAAAAATAAAAAAAGT
Found at i:26143193 original size:17 final size:17
Alignment explanation
Indices: 26143157--26143192 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
26143147 CAACCTTTAA
26143157 TTTCCATTAAATAATTT
1 TTTCCATTAAATAATTT
*
26143174 TTTCCTTTAAAT-ATTT
1 TTTCCATTAAATAATTT
26143190 TTT
1 TTT
26143193 TTAAATTGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTCCATTAAATAATTT
Found at i:26143657 original size:12 final size:12
Alignment explanation
Indices: 26143640--26143669 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
26143630 TAATCCTCTC
26143640 AATTTCCTTCCA
1 AATTTCCTTCCA
26143652 AATTTCCTTCCA
1 AATTTCCTTCCA
26143664 AATTTC
1 AATTTC
26143670 TCTCAAACCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (12 bp):
AATTTCCTTCCA
Found at i:26143712 original size:51 final size:51
Alignment explanation
Indices: 26143638--26143759 Score: 192
Period size: 51 Copynumber: 2.4 Consensus size: 51
26143628 TCTAATCCTC
*
26143638 TCAATTTCCT-TCCAAATTTCCTTCCAAATTTCTCTCAAACCCATATTTAATT
1 TCAATTTCCTCT-C-AATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATT
*
26143690 TCAATTTCCTCTCAATTTCCTTCCAAAATTCTCTCAAATCCATATTTAATT
1 TCAATTTCCTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATT
*
26143741 TCAATTTCCCCTCAATTTC
1 TCAATTTCCTCTCAATTTC
26143760 ATTTTTTAAA
Statistics
Matches: 66, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
51 54 0.82
52 11 0.17
53 1 0.02
ACGTcount: A:0.28, C:0.30, G:0.00, T:0.43
Consensus pattern (51 bp):
TCAATTTCCTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATT
Found at i:26143803 original size:30 final size:31
Alignment explanation
Indices: 26143767--26143824 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
26143757 TTCATTTTTT
26143767 AAAATAA-TTTAAATTTTTTTATATTTTTAA
1 AAAATAATTTTAAATTTTTTTATATTTTTAA
26143797 AAAATAATTTTAAATTTTTTTATATTTT
1 AAAATAATTTTAAATTTTTTTATATTTT
26143825 CATCAATGGC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
30 7 0.26
31 20 0.74
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (31 bp):
AAAATAATTTTAAATTTTTTTATATTTTTAA
Found at i:26144914 original size:7 final size:7
Alignment explanation
Indices: 26144902--26144926 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26144892 AGTCGATTGA
26144902 TATTTAG
1 TATTTAG
26144909 TATTTAG
1 TATTTAG
26144916 TATTTAG
1 TATTTAG
26144923 TATT
1 TATT
26144927 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:26146132 original size:71 final size:71
Alignment explanation
Indices: 26146014--26146198 Score: 325
Period size: 71 Copynumber: 2.6 Consensus size: 71
26146004 TATTTAAATT
26146014 TATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATACGCATAGAAATTTTTTCGAGTTA
1 TATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATACGCATAGAAATTTTTTCGAGTTA
26146079 TTTTGA
66 TTTTGA
* * *
26146085 TATTATTTGATGTAATAAAATAAAAGTTTATTTGATATAATAGGCATAGAAATTTTTTCGAGTTA
1 TATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATACGCATAGAAATTTTTTCGAGTTA
26146150 TTTTGA
66 TTTTGA
*
26146156 TATTATTTGATATAATAAAATAGAAGTTCTATTTGATGTAATA
1 TATTATTTGATGTAATAAAATAGAAGTT-TATTTGATGTAATA
26146199 AAAACCCTAA
Statistics
Matches: 107, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
71 94 0.88
72 13 0.12
ACGTcount: A:0.38, C:0.03, G:0.14, T:0.45
Consensus pattern (71 bp):
TATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATACGCATAGAAATTTTTTCGAGTTA
TTTTGA
Found at i:26146255 original size:23 final size:23
Alignment explanation
Indices: 26146225--26146369 Score: 101
Period size: 23 Copynumber: 5.4 Consensus size: 23
26146215 TAAAAACCCT
26146225 AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
26146248 AACCCTAAACCCTAATCTAATTTAATTAAA
1 AACCCT-AA--C----CTAATTTAATTAAA
26146278 AACCCTAAAACCTAACCTAATTTAATTAAAA
1 AA-CC------CTAACCTAATTTAATT-AAA
26146309 ACCCTAACCCTAACCTAATTTAATTAAA
1 A----A-CCCTAACCTAATTTAATTAAA
*
26146337 AATCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
26146360 AACCCTAACC
1 AACCCTAACC
26146370 CTAACCTAAT
Statistics
Matches: 100, Mismatches: 3, Indels: 38
0.71 0.02 0.27
Matches are distributed among these distances:
23 35 0.35
24 3 0.03
26 1 0.01
28 4 0.04
29 16 0.16
30 27 0.27
31 6 0.06
34 1 0.01
35 3 0.03
36 2 0.02
37 2 0.02
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.28
Consensus pattern (23 bp):
AACCCTAACCTAATTTAATTAAA
Found at i:26146261 original size:30 final size:29
Alignment explanation
Indices: 26146204--26146411 Score: 320
Period size: 30 Copynumber: 7.3 Consensus size: 29
26146194 TAATAAAAAC
26146204 CCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAA
26146233 CCTAATTTAATTAAAAACCCTAAACCCTAA
1 CCTAATTTAATTAAAAACCCT-AACCCTAA
* *
26146263 TCTAATTTAATTAAAAACCCTAAAACCTAA
1 CCTAATTTAATTAAAAACCCT-AACCCTAA
26146293 CCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAA
26146322 CCTAATTTAATTAAAAA---T---CCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAA
26146345 CCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAA
*
26146374 CCTAATTTAATTAAAAACCTTAAACCCTAA
1 CCTAATTTAATTAAAAACCCT-AACCCTAA
26146404 CCTAATTT
1 CCTAATTT
26146412 TACATAATTT
Statistics
Matches: 166, Mismatches: 5, Indels: 15
0.89 0.03 0.08
Matches are distributed among these distances:
23 22 0.13
26 2 0.01
29 70 0.42
30 72 0.43
ACGTcount: A:0.46, C:0.25, G:0.00, T:0.30
Consensus pattern (29 bp):
CCTAATTTAATTAAAAACCCTAACCCTAA
Found at i:26146348 original size:52 final size:51
Alignment explanation
Indices: 26146284--26146393 Score: 211
Period size: 52 Copynumber: 2.1 Consensus size: 51
26146274 TAAAAACCCT
26146284 AAAACCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
1 AAAACCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
26146335 AAAATCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
1 AAAA-CCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
26146387 AAAACCT
1 AAAACCT
26146394 TAAACCCTAA
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
51 7 0.12
52 51 0.88
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (51 bp):
AAAACCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
Found at i:26146360 original size:82 final size:82
Alignment explanation
Indices: 26146258--26146411 Score: 265
Period size: 82 Copynumber: 1.9 Consensus size: 82
26146248 AACCCTAAAC
*
26146258 CCTAATCTAATTTAATTAAAAACCCTAAAACCTAACCTAATTTAATTAAAAACCCT-AACCCTAA
1 CCTAACCTAATTTAATTAAAAACCCT-AAACCTAACCTAATTTAATTAAAAACCCTAAACCCTAA
26146322 CCTAATTTAATTAAAAAT
65 CCTAATTTAATTAAAAAT
* *
26146340 CCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCTTAAACCCTAAC
1 CCTAACCTAATTTAATTAAAAACCCTAAACCTAACCTAATTTAATTAAAAACCCTAAACCCTAAC
26146405 CTAATTT
66 CTAATTT
26146412 TACATAATTT
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
81 27 0.40
82 41 0.60
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.31
Consensus pattern (82 bp):
CCTAACCTAATTTAATTAAAAACCCTAAACCTAACCTAATTTAATTAAAAACCCTAAACCCTAAC
CTAATTTAATTAAAAAT
Found at i:26146475 original size:10 final size:10
Alignment explanation
Indices: 26146460--26146484 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
26146450 TTTGGACTTA
26146460 ATAATTTTAC
1 ATAATTTTAC
26146470 ATAATTTTAC
1 ATAATTTTAC
26146480 ATAAT
1 ATAAT
26146485 GTTAGATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (10 bp):
ATAATTTTAC
Found at i:26149141 original size:124 final size:124
Alignment explanation
Indices: 26148969--26149316 Score: 563
Period size: 124 Copynumber: 2.8 Consensus size: 124
26148959 CAAACTTCCT
* * * *
26148969 ACTGTAGCAAAATCGCGTCCACGAAGGCGCGATTTCACAATTTTTTCTCAAATAGCATTCTAGTA
1 ACTGTAGCAAAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTA
* *
26149034 GAAGCGATATTATACTATTTGCTTAGAAACGTCAAAAAAAATTATTTCTTACATGACCA
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGACCA
* *
26149093 ACTGTAGCAAAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGTATCCTGGTA
1 ACTGTAGCAAAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTA
*
26149158 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGACCT
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGACCA
* * *
26149217 ACTGTAACGAAACCGCGTCCACGAGGGCGA-GATTTCACAATTTCTTCTCAAATAGCATCCTAGT
1 ACTGTAGCAAAATCGCGTCCACGAGGGC-ACGATTTCACAATTTCTTCTCAAATAGCATCCTAGT
*
26149281 AGAACCGATTTTATACTATTTGCTCAGAAACGTCAA
65 AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAA
26149317 CTCGAAATAA
Statistics
Matches: 208, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
124 207 1.00
125 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.30
Consensus pattern (124 bp):
ACTGTAGCAAAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTA
GAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGACCA
Found at i:26149672 original size:12 final size:12
Alignment explanation
Indices: 26149633--26149675 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 12
26149623 TCTCATAAAT
26149633 TTTCTTTTTATTA
1 TTTCTTTTT-TTA
26149646 TTATTCTTTTATTTA
1 -T-TTCTTTT-TTTA
26149661 TTTCTTTTTTTA
1 TTTCTTTTTTTA
26149673 TTT
1 TTT
26149676 TCACGTCCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 7 0.26
13 7 0.26
14 2 0.07
15 10 0.37
16 1 0.04
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTCTTTTTTTA
Found at i:26150235 original size:29 final size:30
Alignment explanation
Indices: 26150191--26150254 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
26150181 ATTTCAGGTC
*
26150191 ATTTTCGTATATAATT-TTTCCTTTGGGTT
1 ATTTTCGTATATAATTAATTCCTTTGGGTT
*
26150220 ATTTTCGTA-ATCAATTAATTCTTTTGGGTT
1 ATTTTCGTATAT-AATTAATTCCTTTGGGTT
26150250 ATTTT
1 ATTTT
26150255 TGAAAAACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 2 0.06
29 13 0.42
30 16 0.52
ACGTcount: A:0.20, C:0.09, G:0.12, T:0.58
Consensus pattern (30 bp):
ATTTTCGTATATAATTAATTCCTTTGGGTT
Found at i:26152266 original size:12 final size:12
Alignment explanation
Indices: 26152241--26152279 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
26152231 ACTCGCTTCT
* *
26152241 TTACTTACTCAC
1 TTACTTGCTTAC
*
26152253 TTACTTGTTTAC
1 TTACTTGCTTAC
26152265 TTACTTGCTTAC
1 TTACTTGCTTAC
26152277 TTA
1 TTA
26152280 AATAACTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:26152604 original size:50 final size:50
Alignment explanation
Indices: 26152528--26152673 Score: 157
Period size: 50 Copynumber: 2.9 Consensus size: 50
26152518 TTTTCTGTAT
* * **
26152528 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * * ** *
26152578 TGCCCATGCCATGTCTCAGACATGGTCATACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* ** * *
26152628 CGCCAACCCCATGTCCCAGACATGGACTTAAATGGGACCTCTCATA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
26152674 ATCTCAATAA
Statistics
Matches: 75, Mismatches: 21, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
50 75 1.00
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:26153044 original size:43 final size:43
Alignment explanation
Indices: 26152933--26153023 Score: 173
Period size: 43 Copynumber: 2.1 Consensus size: 43
26152923 GTACAAAATA
*
26152933 TGATCAAATCTAGCACTTTAGTCTTCAACCTTTTTTCTTTCCC
1 TGATCAAATCTAGCACTTTTGTCTTCAACCTTTTTTCTTTCCC
26152976 TGATCAAATCTAGCACTTTTGTCTTCAACCTTTTTTCTTTCCC
1 TGATCAAATCTAGCACTTTTGTCTTCAACCTTTTTTCTTTCCC
26153019 TGATC
1 TGATC
26153024 TAACTCTGGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.20, C:0.27, G:0.08, T:0.45
Consensus pattern (43 bp):
TGATCAAATCTAGCACTTTTGTCTTCAACCTTTTTTCTTTCCC
Found at i:26159852 original size:12 final size:12
Alignment explanation
Indices: 26159827--26159865 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
26159817 ACTCGCTTCT
* *
26159827 TTACTTACTCAC
1 TTACTTGCTTAC
*
26159839 TTACTTGTTTAC
1 TTACTTGCTTAC
26159851 TTACTTGCTTAC
1 TTACTTGCTTAC
26159863 TTA
1 TTA
26159866 AATAACTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:26160193 original size:50 final size:49
Alignment explanation
Indices: 26160127--26160259 Score: 151
Period size: 50 Copynumber: 2.7 Consensus size: 49
26160117 CAATGTCATA
* ** *
26160127 TCCCAGATATGGTCTTACATAGGAGTTCTCATATCGGTGCGC-ATGCCATG
1 TCCCAGACATGGTCTTACAT-GGACCTCTCATATCGGTGC-CAACGCCATG
** * *
26160177 TCTTAGACATGGTCTTACGGTGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTAC-ATGGACCTCTCATATCGGTGCCAACGCCATG
26160227 TCCCAGACATGGTCTTACATGGGACCTCTCATA
1 TCCCAGACATGGTCTTACAT-GGACCTCTCATA
26160260 ATCTCAATAA
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
49 2 0.03
50 65 0.96
51 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.29
Consensus pattern (49 bp):
TCCCAGACATGGTCTTACATGGACCTCTCATATCGGTGCCAACGCCATG
Found at i:26162205 original size:28 final size:27
Alignment explanation
Indices: 26162170--26162259 Score: 64
Period size: 26 Copynumber: 3.4 Consensus size: 27
26162160 CATATTTGTA
*
26162170 ATATTAT-TAGTATTTATTTTTAAATT
1 ATATTATATTGTATTTATTTTTAAATT
* * *
26162196 ATATTATATTTTAACTTATCTTT-AATT
1 ATATTATATTGT-ATTTATTTTTAAATT
*
26162223 -TATTATATTG--TTAATTTTTTAAATTT
1 ATATTATATTGTATTTA-TTTTTAAA-TT
26162249 ATAATTATATT
1 AT-ATTATATT
26162260 AGTAATCTCA
Statistics
Matches: 49, Mismatches: 8, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
23 2 0.04
24 4 0.08
25 2 0.04
26 18 0.37
27 7 0.14
28 16 0.33
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (27 bp):
ATATTATATTGTATTTATTTTTAAATT
Found at i:26163039 original size:20 final size:22
Alignment explanation
Indices: 26163001--26163048 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
26162991 TAAAATAAAT
*
26163001 AAATAATTCATTAAGTT-AAGA
1 AAATAACTCATTAAGTTAAAGA
*
26163022 AAATAACTC-TTAATTTAAAGA
1 AAATAACTCATTAAGTTAAAGA
26163043 AAATAA
1 AAATAA
26163049 ACGTAATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.31
Consensus pattern (22 bp):
AAATAACTCATTAAGTTAAAGA
Found at i:26163055 original size:20 final size:21
Alignment explanation
Indices: 26163018--26163056 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26163008 TCATTAAGTT
* *
26163018 AAGAAAATAACTCTTAATTTA
1 AAGAAAATAACACGTAATTTA
26163039 AAGAAAATAA-ACGTAATT
1 AAGAAAATAACACGTAATT
26163057 ATCTAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (21 bp):
AAGAAAATAACACGTAATTTA
Found at i:26164773 original size:22 final size:22
Alignment explanation
Indices: 26164740--26164790 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
26164730 CTTAAATTTT
26164740 TTTTGCTTTTGTTTTACTATCA
1 TTTTGCTTTTGTTTTACTATCA
* *
26164762 TTTTG-TTGTTGTTTTGCTGTCA
1 TTTTGCTT-TTGTTTTACTATCA
26164784 TTTTGCT
1 TTTTGCT
26164791 ATTATACTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 2 0.08
22 22 0.88
23 1 0.04
ACGTcount: A:0.08, C:0.12, G:0.16, T:0.65
Consensus pattern (22 bp):
TTTTGCTTTTGTTTTACTATCA
Found at i:26166249 original size:78 final size:78
Alignment explanation
Indices: 26166120--26166278 Score: 309
Period size: 78 Copynumber: 2.0 Consensus size: 78
26166110 TTAGCTGTCA
26166120 CTTGCCATGCATGACTTTGCATGTTTCTTGTCCCTATTTGATTGTCTATATAATACGTGGATCTT
1 CTTGCCATGCATGACTTTGCATGTTTCTTGTCCCTATTTGATTGTCTATATAATACGTGGATCTT
26166185 TTAATATTCAAAC
66 TTAATATTCAAAC
*
26166198 CTTGCCATGCATGACTTTGCATGTTTCTTGTCCCTATTTTATTGTCTATATAATACGTGGATCTT
1 CTTGCCATGCATGACTTTGCATGTTTCTTGTCCCTATTTGATTGTCTATATAATACGTGGATCTT
26166263 TTAATATTCAAAC
66 TTAATATTCAAAC
26166276 CTT
1 CTT
26166279 TGGAGTATTT
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 80 1.00
ACGTcount: A:0.23, C:0.19, G:0.13, T:0.45
Consensus pattern (78 bp):
CTTGCCATGCATGACTTTGCATGTTTCTTGTCCCTATTTGATTGTCTATATAATACGTGGATCTT
TTAATATTCAAAC
Found at i:26172903 original size:21 final size:20
Alignment explanation
Indices: 26172860--26172907 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
26172850 ATACAAATTC
* **
26172860 TAAAATTTTATAAAAATGCA
1 TAAAAATTTATAAAAATAAA
26172880 TAAAAATTTATAAAAGATAAA
1 TAAAAATTTATAAAA-ATAAA
26172901 TAAAAAT
1 TAAAAAT
26172908 AAAAATGGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (20 bp):
TAAAAATTTATAAAAATAAA
Found at i:26183245 original size:18 final size:18
Alignment explanation
Indices: 26183210--26183248 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
26183200 GAAAAAATGA
*
26183210 AAAAATAATTAAAAAAAT
1 AAAAATAAATAAAAAAAT
* *
26183228 AAAAATAAATAGATAAAT
1 AAAAATAAATAAAAAAAT
26183246 AAA
1 AAA
26183249 TGAAGGTGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.21
Consensus pattern (18 bp):
AAAAATAAATAAAAAAAT
Found at i:26184621 original size:20 final size:20
Alignment explanation
Indices: 26184596--26184640 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
26184586 CCATGAATTG
*
26184596 TTTTATTGATAAGATTATAA
1 TTTTATTGATAAAATTATAA
* *
26184616 TTTTATTTATAAAATTATTA
1 TTTTATTGATAAAATTATAA
26184636 TTTTA
1 TTTTA
26184641 ATAAATAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (20 bp):
TTTTATTGATAAAATTATAA
Found at i:26184756 original size:18 final size:17
Alignment explanation
Indices: 26184722--26184754 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
26184712 CAAAAAAATG
26184722 TTTTTTAAATATTTTTA
1 TTTTTTAAATATTTTTA
26184739 TTTTTTAAATATTTTT
1 TTTTTTAAATATTTTT
26184755 TAACTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTTTAAATATTTTTA
Found at i:26184762 original size:18 final size:17
Alignment explanation
Indices: 26184724--26184764 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
26184714 AAAAAATGTT
**
26184724 TTTTAAATATTTTTATT
1 TTTTAAATATTTTTAAC
26184741 TTTTAAATATTTTTTAAC
1 TTTTAAATA-TTTTTAAC
26184759 TTTTAA
1 TTTTAA
26184765 CTTTTAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTAAATATTTTTAAC
Found at i:26186915 original size:3 final size:3
Alignment explanation
Indices: 26186898--26186938 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
26186888 TCGCCTTTGC
*
26186898 CTT C-T CTT CCTT CTT CTT CTC CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT -CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
26186939 CTTTGTCCCT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (3 bp):
CTT
Found at i:26188294 original size:23 final size:23
Alignment explanation
Indices: 26188245--26188294 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
26188235 AAAATTAAGT
*
26188245 AAAACATTAAAGCATTCCAATAT
1 AAAACATTAAAGCATTCCAATAC
* *
26188268 AAAACATT-AAGACATTTCAATCC
1 AAAACATTAAAG-CATTCCAATAC
26188291 AAAA
1 AAAA
26188295 GTAACCATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.54, C:0.18, G:0.04, T:0.24
Consensus pattern (23 bp):
AAAACATTAAAGCATTCCAATAC
Found at i:26190046 original size:26 final size:26
Alignment explanation
Indices: 26190017--26190067 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26190007 ATATACCCAT
*
26190017 GAACTGCTTA-ATACCCCAATGAACAA
1 GAACTG-TTATATACCCCAACGAACAA
26190043 GAACTGTTATATACCCCAACGAACA
1 GAACTGTTATATACCCCAACGAACA
26190068 TTGCTTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.41, C:0.27, G:0.12, T:0.20
Consensus pattern (26 bp):
GAACTGTTATATACCCCAACGAACAA
Found at i:26197493 original size:20 final size:20
Alignment explanation
Indices: 26197448--26197493 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
26197438 GGTGATATTT
26197448 TCTTTATAATATTAACAACA
1 TCTTTATAATATTAACAACA
* *
26197468 TATTTATACTATTAATCAA-A
1 TCTTTATAATATTAA-CAACA
26197488 TCTTTA
1 TCTTTA
26197494 ATTGAGTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 19 0.86
21 3 0.14
ACGTcount: A:0.41, C:0.13, G:0.00, T:0.46
Consensus pattern (20 bp):
TCTTTATAATATTAACAACA
Found at i:26203837 original size:92 final size:92
Alignment explanation
Indices: 26203667--26203848 Score: 251
Period size: 92 Copynumber: 2.0 Consensus size: 92
26203657 ACAGAGGAAG
* *
26203667 TAGTCGACAGTTCATTTGCTCGACCAGTGGTTTATCCACAATATATTAGCAACTTTTATCTACAC
1 TAGTCGACAGTTCATCTGCTCGACCAGTGGTTTATCAACAATATATTAGCAACTTTTATCTACAC
26203732 AAATGAATGGTTCATCCACCAATATTC
66 AAATGAATGGTTCATCCACCAATATTC
* * **
26203759 TAGTCGGCAG-TCATCTGCTCGACTAGTGGTTTATCAACAACT-TATTAGCATTTTTTTATCTAC
1 TAGTCGACAGTTCATCTGCTCGACCAGTGGTTTATCAACAA-TATATTAGCA-ACTTTTATCTAC
* * *
26203822 ACAGATGGATGGTTCATCCATCAATAT
64 ACAAATGAATGGTTCATCCACCAATAT
26203849 ATTTATCATT
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
91 35 0.44
92 44 0.56
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (92 bp):
TAGTCGACAGTTCATCTGCTCGACCAGTGGTTTATCAACAATATATTAGCAACTTTTATCTACAC
AAATGAATGGTTCATCCACCAATATTC
Found at i:26206134 original size:71 final size:71
Alignment explanation
Indices: 26206018--26206292 Score: 212
Period size: 71 Copynumber: 3.9 Consensus size: 71
26206008 AAATGATTTC
* * ** * **
26206018 ACACATATTAGTCGGTTTTACCGACCAATGCAGGGCGCATTTATTGTCAGTTATATTGACCAGTG
1 ACACATATTTGTCGGTTTTACCGACCAACGCACAGCACATTTATTGTCAGTTATACCGACCAGTG
26206083 CGGGGA
66 CGGGGA
* * * **
26206089 ACACATATTTGTCAGTTTTACCGACCAGCGTACAGCACATTTATTGTTGGTTATACCGACCAGTG
1 ACACATATTTGTCGGTTTTACCGACCAACGCACAGCACATTTATTGTCAGTTATACCGACCAGTG
* *
26206154 CTGGGC
66 CGGGGA
* * * ** ** ** *
26206160 ACACATATTTATCGGTTTTATCGACTAGTGCAGGGTGCATTTATTGTCAATTATACCGACCAGTG
1 ACACATATTTGTCGGTTTTACCGACCAACGCACAGCACATTTATTGTCAGTTATACCGACCAGTG
* * *
26206225 CTGTGC
66 CGGGGA
* * * * * * *
26206231 ACACATATTTTTTGGTTCTACCGACCAGCGCA-AGACGCATTTATTAT-TGTTTATACCGACCA
1 ACACATATTTGTCGGTTTTACCGACCAACGCACAG-CACATTTATTGTCAG-TTATACCGACCA
26206293 ATGCTACGAA
Statistics
Matches: 163, Mismatches: 39, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
70 1 0.01
71 162 0.99
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (71 bp):
ACACATATTTGTCGGTTTTACCGACCAACGCACAGCACATTTATTGTCAGTTATACCGACCAGTG
CGGGGA
Found at i:26206162 original size:35 final size:35
Alignment explanation
Indices: 26206123--26206297 Score: 100
Period size: 35 Copynumber: 4.9 Consensus size: 35
26206113 CCAGCGTACA
26206123 GCACATTTATTGTTGGTTATACCGACCAGTGCTGG
1 GCACATTTATTGTTGGTTATACCGACCAGTGCTGG
** * * * *
26206158 GCACACATATT-TATCGGTTTTATCGACTAGTGCAGG
1 GCACATTTATTGT-T-GGTTATACCGACCAGTGCTGG
** *** *
26206194 GTGCATTTATTGTCAATTATACCGACCAGTGCTGT
1 GCACATTTATTGTTGGTTATACCGACCAGTGCTGG
** * * * **
26206229 GCACACATATTTTTTGGTTCTACCGACCAGCGCAAG
1 GCACATTTA-TTGTTGGTTATACCGACCAGTGCTGG
* * * * *
26206265 ACGCATTTATTATTGTTTATACCGACCAATGCT
1 GCACATTTATTGTTGGTTATACCGACCAGTGCT
26206298 ACGAACACTC
Statistics
Matches: 95, Mismatches: 41, Indels: 8
0.66 0.28 0.06
Matches are distributed among these distances:
34 1 0.01
35 47 0.49
36 46 0.48
37 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (35 bp):
GCACATTTATTGTTGGTTATACCGACCAGTGCTGG
Found at i:26206273 original size:142 final size:142
Alignment explanation
Indices: 26206017--26206297 Score: 359
Period size: 142 Copynumber: 2.0 Consensus size: 142
26206007 GAAATGATTT
* **
26206017 CACACATATTAGTCGGTTTTACCGACCAATGCAGGGCGCATTTATTGTCAGTTATATTGACCAGT
1 CACACATATTAGTCGGTTTTACCGACCAATGCAGGGCGCATTTATTGTCAATTATACCGACCAGT
* * *
26206082 GCGGGGAACACATATTTGTCAGTTTTACCGACCAGCGTACAGCACATTTATTGTTGGTTATACCG
66 GCGGGGAACACATATTTGTCAGTTCTACCGACCAGCGCACAGCACATTTATTATTGGTTATACCG
*
26206147 ACCAGTGCTGGG
131 ACCAATGCTGGG
* * * *
26206159 CACACATATTTA-TCGGTTTTATCGACTAGTGCAGGGTGCATTTATTGTCAATTATACCGACCAG
1 CACACATA-TTAGTCGGTTTTACCGACCAATGCAGGGCGCATTTATTGTCAATTATACCGACCAG
* * * * ** * *
26206223 TGCTGTGCACACATATTTTTTGGTTCTACCGACCAGCGCA-AGACGCATTTATTATTGTTTATAC
65 TGCGGGGAACACATATTTGTCAGTTCTACCGACCAGCGCACAG-CACATTTATTATTGGTTATAC
26206287 CGACCAATGCT
129 CGACCAATGCT
26206298 ACGAACACTC
Statistics
Matches: 118, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
141 2 0.02
142 113 0.96
143 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (142 bp):
CACACATATTAGTCGGTTTTACCGACCAATGCAGGGCGCATTTATTGTCAATTATACCGACCAGT
GCGGGGAACACATATTTGTCAGTTCTACCGACCAGCGCACAGCACATTTATTATTGGTTATACCG
ACCAATGCTGGG
Found at i:26210690 original size:29 final size:29
Alignment explanation
Indices: 26210666--26210724 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
26210656 GTCACATGGT
26210666 CATGTGTCACACACAGACTACCACACGGC
1 CATGTGTCACACACAGACTACCACACGGC
* * ** *
26210695 CGTGTGTTACACACATCCTACCACAAGGC
1 CATGTGTCACACACAGACTACCACACGGC
26210724 C
1 C
26210725 TGGCACACGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.29, C:0.37, G:0.17, T:0.17
Consensus pattern (29 bp):
CATGTGTCACACACAGACTACCACACGGC
Found at i:26226166 original size:6 final size:6
Alignment explanation
Indices: 26226118--26226168 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
26226108 TTAATTTTCC
* *
26226118 TATTAT TATTATT TATTTT TAGTATTT TA-TTT TATTTT CATTTT TATTTT
1 TATTTT TATT-TT TATTTT TA-T-TTT TATTTT TATTTT TATTTT TATTTT
26226168 T
1 T
26226169 GCAGGAAACA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
5 5 0.13
6 22 0.58
7 6 0.16
8 5 0.13
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.75
Consensus pattern (6 bp):
TATTTT
Found at i:26226622 original size:8 final size:8
Alignment explanation
Indices: 26226611--26226647 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
26226601 ACAATAAAAC
26226611 AAAAAATA
1 AAAAAATA
26226619 AAAAAAT-
1 AAAAAATA
26226626 -AAAAATA
1 AAAAAATA
26226633 AAAAAA-A
1 AAAAAATA
26226640 AAAAAATA
1 AAAAAATA
26226648 CTCCTCTGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
6 6 0.23
7 7 0.27
8 13 0.50
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAATA
Found at i:26226629 original size:15 final size:15
Alignment explanation
Indices: 26226606--26226647 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
26226596 TTTCAACAAT
*
26226606 AAAACAAAAAAT-AA
1 AAAAAAAAAAATAAA
*
26226620 AAAAATAAAAATAAA
1 AAAAAAAAAAATAAA
26226635 AAAAAAAAAAATA
1 AAAAAAAAAAATA
26226648 CTCCTCTGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 10 0.42
15 14 0.58
ACGTcount: A:0.88, C:0.02, G:0.00, T:0.10
Consensus pattern (15 bp):
AAAAAAAAAAATAAA
Found at i:26226630 original size:21 final size:21
Alignment explanation
Indices: 26226606--26226647 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
26226596 TTTCAACAAT
*
26226606 AAAACAAAAAATAAAAAAATA
1 AAAACAAAAAAAAAAAAAATA
*
26226627 AAAATAAAAAAAAAAAAAATA
1 AAAACAAAAAAAAAAAAAATA
26226648 CTCCTCTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.88, C:0.02, G:0.00, T:0.10
Consensus pattern (21 bp):
AAAACAAAAAAAAAAAAAATA
Found at i:26226644 original size:14 final size:14
Alignment explanation
Indices: 26226606--26226644 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
26226596 TTTCAACAAT
*
26226606 AAAACAAAAAATAA
1 AAAAAAAAAAATAA
*
26226620 AAAAATAAAAATAA
1 AAAAAAAAAAATAA
26226634 AAAAAAAAAAA
1 AAAAAAAAAAA
26226645 ATACTCCTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.90, C:0.03, G:0.00, T:0.08
Consensus pattern (14 bp):
AAAAAAAAAAATAA
Found at i:26242264 original size:46 final size:47
Alignment explanation
Indices: 26242148--26242278 Score: 115
Period size: 46 Copynumber: 2.9 Consensus size: 47
26242138 TAATATTACG
* * * ***
26242148 TATTCTCTAGTTCGCAACATATGCA-AGAGTTGGGACCCTAAATTTG
1 TATTCTCTAGTCCGCAACATATGCAGAGAGATGGGAACCTAAATCCA
* * ** * *
26242194 TATTCTCAAATCCATAAAAAATGCAGAG-GATGGGAACCTAAATCCA
1 TATTCTCTAGTCCGCAACATATGCAGAGAGATGGGAACCTAAATCCA
* *
26242240 TATTCTCTAGTCCGCAACATATGCAG-GAGCTAGGAACCT
1 TATTCTCTAGTCCGCAACATATGCAGAGAGATGGGAACCT
26242279 GGGCAAAAAT
Statistics
Matches: 63, Mismatches: 20, Indels: 4
0.72 0.23 0.05
Matches are distributed among these distances:
45 1 0.02
46 60 0.95
47 2 0.03
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (47 bp):
TATTCTCTAGTCCGCAACATATGCAGAGAGATGGGAACCTAAATCCA
Found at i:26251151 original size:25 final size:25
Alignment explanation
Indices: 26251114--26251161 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
26251104 TAAGTAGGCC
26251114 CATATTCACAACTCATGTGAGCATT
1 CATATTCACAACTCATGTGAGCATT
* *
26251139 CATATTCATAACTCGTGTGAGCA
1 CATATTCACAACTCATGTGAGCA
26251162 ATTCTATCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (25 bp):
CATATTCACAACTCATGTGAGCATT
Found at i:26253496 original size:19 final size:19
Alignment explanation
Indices: 26253472--26253511 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
26253462 ATTAATTTTG
*
26253472 ATCAAATGAAATGAAATTA
1 ATCAAATGAAATAAAATTA
* *
26253491 ATCAAATTAATTAAAATTA
1 ATCAAATGAAATAAAATTA
26253510 AT
1 AT
26253512 ATGATATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (19 bp):
ATCAAATGAAATAAAATTA
Found at i:26254261 original size:13 final size:12
Alignment explanation
Indices: 26254221--26254258 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
26254211 TGTGGCTGGT
26254221 AATTTTTGTGAA
1 AATTTTTGTGAA
*
26254233 AATTTTT-TGCGA
1 AATTTTTGTG-AA
26254245 AATTTTTGTGAA
1 AATTTTTGTGAA
26254257 AA
1 AA
26254259 ATTATCAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
11 2 0.09
12 18 0.82
13 2 0.09
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (12 bp):
AATTTTTGTGAA
Found at i:26255138 original size:93 final size:94
Alignment explanation
Indices: 26255034--26255269 Score: 318
Period size: 93 Copynumber: 2.5 Consensus size: 94
26255024 TTAATGGTGC
* *
26255034 AAAAAA-ACCCTCAAACTTTTTCAAAAAAAGTAATTTAGCCTCTGCTTTTTTTTTTTTGCACTCA
1 AAAAAAGACCCTCAAACTTTTTCAAAAAAAGTAATTAAGCCCCTGCTTTTTTTTTTTTGCACTCA
*
26255098 ATTGGGTACTTGAACTTTCAAAATCCAT-
66 ATTGGGTACTTGAACCTTCAAAATCCATA
* * * * *
26255126 CAAAAAGGCCCTCAAACCTTTTCAAAAAAAAATAATTAAGCCCCTAC--TTTTTTTTTTGCACTC
1 AAAAAAGACCCTCAAACTTTTTC-AAAAAAAGTAATTAAGCCCCTGCTTTTTTTTTTTTGCACTC
*
26255189 AATTGGGTACTTGAACCTTCAAAATGCATA
65 AATTGGGTACTTGAACCTTCAAAATCCATA
* **
26255219 AAAAAATACCCTCAAACTTATTAAAAAAAAAGTAATTAAGCCCCTGCTTTT
1 AAAAAAGACCCTCAAACTT-TTTCAAAAAAAGTAATTAAGCCCCTGCTTTT
26255270 ATTAAAAATT
Statistics
Matches: 121, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
92 48 0.40
93 50 0.41
94 21 0.17
95 2 0.02
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (94 bp):
AAAAAAGACCCTCAAACTTTTTCAAAAAAAGTAATTAAGCCCCTGCTTTTTTTTTTTTGCACTCA
ATTGGGTACTTGAACCTTCAAAATCCATA
Found at i:26255196 original size:92 final size:93
Alignment explanation
Indices: 26255034--26255269 Score: 311
Period size: 92 Copynumber: 2.5 Consensus size: 93
26255024 TTAATGGTGC
* * * *
26255034 AAAAAA-ACCCTCAAACTTTTTC-AAAAAAAGTAATTTAGCCTCTGCTTTTTTTTTTTTGCACTC
1 AAAAAAGACCCTCAAACCTTTTCAAAAAAAAATAATTAAGCCCCTGC--TTTTTTTTTTGCACTC
*
26255097 AATTGGGTACTTGAACTTTCAAAATCCAT-
64 AATTGGGTACTTGAACCTTCAAAATCCATA
* * *
26255126 CAAAAAGGCCCTCAAACCTTTTCAAAAAAAAATAATTAAGCCCCTACTTTTTTTTTTGCACTCAA
1 AAAAAAGACCCTCAAACCTTTTCAAAAAAAAATAATTAAGCCCCTGCTTTTTTTTTTGCACTCAA
*
26255191 TTGGGTACTTGAACCTTCAAAATGCATA
66 TTGGGTACTTGAACCTTCAAAATCCATA
*
26255219 AAAAAATACCCTCAAA-CTTATT-AAAAAAAAAGTAATTAAGCCCCTGCTTTT
1 AAAAAAGACCCTCAAACCTT-TTCAAAAAAAAA-TAATTAAGCCCCTGCTTTT
26255270 ATTAAAAATT
Statistics
Matches: 126, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
92 60 0.48
93 47 0.37
94 19 0.15
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (93 bp):
AAAAAAGACCCTCAAACCTTTTCAAAAAAAAATAATTAAGCCCCTGCTTTTTTTTTTGCACTCAA
TTGGGTACTTGAACCTTCAAAATCCATA
Found at i:26255387 original size:17 final size:19
Alignment explanation
Indices: 26255365--26255401 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
26255355 AAATTTATTA
26255365 AAAATT-AGAAAAA-ATAT
1 AAAATTCAGAAAAATATAT
*
26255382 AAAATTCATAAAAATATAT
1 AAAATTCAGAAAAATATAT
26255401 A
1 A
26255402 TAAAAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 6 0.35
19 5 0.29
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.27
Consensus pattern (19 bp):
AAAATTCAGAAAAATATAT
Found at i:26255395 original size:10 final size:9
Alignment explanation
Indices: 26255346--26255435 Score: 56
Period size: 9 Copynumber: 9.2 Consensus size: 9
26255336 CAAAAAATTC
*
26255346 AAATTTTAA
1 AAATTATAA
26255355 AAATTTATTAA
1 AAA-TTA-TAA
*
26255366 AAATTAGAA
1 AAATTATAA
*
26255375 AAAATAT-A
1 AAATTATAA
26255383 AAATTCATAAA
1 AAATT-AT-AA
26255394 AATATATATAAA
1 AA-AT-TAT-AA
26255406 AAATTATAA
1 AAATTATAA
*
26255415 AATTTTATAA
1 AA-ATTATAA
*
26255425 AAATCATAA
1 AAATTATAA
26255434 AA
1 AA
26255436 TATAATATAT
Statistics
Matches: 65, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
8 5 0.08
9 23 0.35
10 16 0.25
11 11 0.17
12 9 0.14
13 1 0.02
ACGTcount: A:0.63, C:0.02, G:0.01, T:0.33
Consensus pattern (9 bp):
AAATTATAA
Found at i:26255406 original size:12 final size:11
Alignment explanation
Indices: 26255352--26255428 Score: 53
Period size: 10 Copynumber: 7.6 Consensus size: 11
26255342 ATTCAAATTT
26255352 TAAAAAT-TTA
1 TAAAAATATTA
*
26255362 TTAAAA-ATTA
1 TAAAAATATTA
*
26255372 GAAAAA-A-TA
1 TAAAAATATTA
*
26255381 T-AAAAT-TCA
1 TAAAAATATTA
26255390 TAAAAATATATA
1 TAAAAATAT-TA
26255402 TAAAAA-ATTA
1 TAAAAATATTA
*
26255412 T-AAAATTTTA
1 TAAAAATATTA
26255422 TAAAAAT
1 TAAAAAT
26255429 CATAAAATAT
Statistics
Matches: 52, Mismatches: 7, Indels: 15
0.70 0.09 0.20
Matches are distributed among these distances:
8 4 0.08
9 8 0.15
10 25 0.48
11 8 0.15
12 7 0.13
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (11 bp):
TAAAAATATTA
Found at i:26255710 original size:19 final size:19
Alignment explanation
Indices: 26255681--26255795 Score: 85
Period size: 19 Copynumber: 6.2 Consensus size: 19
26255671 TCGTTAATTT
*
26255681 TTTTATGATTTTTATAAAA
1 TTTTATAATTTTTATAAAA
* ***
26255700 TTTTGTAATTTTT-TATTT
1 TTTTATAATTTTTATAAAA
**
26255718 TTTTACGATTTTTATAAAA
1 TTTTATAATTTTTATAAAA
** *
26255737 -AATATAAATTTTA-ATAAA
1 TTTTATAATTTTTATA-AAA
26255755 TTTTAT-ATTTTTATTAAAA
1 TTTTATAATTTTTA-TAAAA
*
26255774 TTTAATAATTTTTATAAAA
1 TTTTATAATTTTTATAAAA
26255793 TTT
1 TTT
26255796 ATTATTTATT
Statistics
Matches: 70, Mismatches: 20, Indels: 12
0.69 0.20 0.12
Matches are distributed among these distances:
17 1 0.01
18 29 0.41
19 32 0.46
20 8 0.11
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (19 bp):
TTTTATAATTTTTATAAAA
Found at i:26255747 original size:37 final size:37
Alignment explanation
Indices: 26255677--26255748 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
26255667 GTGGTCGTTA
* * * *
26255677 ATTTTTTTATGATTTTTATAAAATTTTGTAATTTTTT
1 ATTTTTTTACGATTTTTATAAAAATATGAAATTTTTT
26255714 ATTTTTTTACGATTTTTATAAAAAATAT-AAATTTT
1 ATTTTTTTACGATTTTTAT-AAAAATATGAAATTTT
26255749 AATAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 24 0.80
38 6 0.20
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.61
Consensus pattern (37 bp):
ATTTTTTTACGATTTTTATAAAAATATGAAATTTTTT
Found at i:26255786 original size:20 final size:18
Alignment explanation
Indices: 26255725--26255807 Score: 71
Period size: 19 Copynumber: 4.4 Consensus size: 18
26255715 TTTTTTTACG
*
26255725 ATTTTTATAAAAAATATAA-
1 ATTTTTAT--AAAATTTAAT
* *
26255744 ATTTTAAT-AAATTTTAT
1 ATTTTTATAAAATTTAAT
26255761 ATTTTTATTAAAATTTAAT
1 ATTTTTA-TAAAATTTAAT
*
26255780 AATTTTTATAAAATTTATT
1 -ATTTTTATAAAATTTAAT
26255799 ATTTATTAT
1 ATTT-TTAT
26255808 TTTTATAATT
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
16 6 0.11
17 6 0.11
18 5 0.09
19 29 0.55
20 7 0.13
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTTATAAAATTTAAT
Found at i:26255985 original size:91 final size:92
Alignment explanation
Indices: 26255827--26256055 Score: 279
Period size: 91 Copynumber: 2.5 Consensus size: 92
26255817 TTTTAATAAG
* * * * *
26255827 AGCAGGGGCTTAATTGC-ATTTTTGAAAAAATTTGAGGGTCTTTTTTATGCATTTTGAAAGTTTA
1 AGCAGGGGCTTAATTGCTTTTTTTG-AAAAGTTTAAGGGTCTTTTTAATGCATTTTGAAAGTTCA
* ****
26255891 AGTGGCCAATTGAGTG-GGGGAAA-AAA
65 AGTGCCCAATTGAGTGCAAAAAAAGAAA
26255917 AGCAGGGGCTTAATTGCTTTTTTTGAAGAAGTTTAAGGGTCTTTTTAATGCATTTTGAAAGTTCA
1 AGCAGGGGCTTAATTGCTTTTTTTGAA-AAGTTTAAGGGTCTTTTTAATGCATTTTGAAAGTTCA
26255982 AGTGCCCAATTGAGTGCAAAAAAAGAAA
65 AGTGCCCAATTGAGTGCAAAAAAAGAAA
* *
26256010 AGAAGAGGGGCTTAATTGCTTTTTTT-TAAAGTTTAAGGG-CTTTTTA
1 AG--CAGGGGCTTAATTGCTTTTTTTGAAAAGTTTAAGGGTCTTTTTA
26256056 CACCCTTAAA
Statistics
Matches: 121, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
90 19 0.16
91 54 0.45
92 10 0.08
93 16 0.13
94 1 0.01
95 21 0.17
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.36
Consensus pattern (92 bp):
AGCAGGGGCTTAATTGCTTTTTTTGAAAAGTTTAAGGGTCTTTTTAATGCATTTTGAAAGTTCAA
GTGCCCAATTGAGTGCAAAAAAAGAAA
Found at i:26260757 original size:20 final size:21
Alignment explanation
Indices: 26260723--26260761 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26260713 ACTTGAATTA
26260723 AAAAAATCCATATTAAAAACC
1 AAAAAATCCATATTAAAAACC
*
26260744 AAAAAATCGA-ATTAAAAA
1 AAAAAATCCATATTAAAAA
26260762 TTTTCAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.67, C:0.13, G:0.03, T:0.18
Consensus pattern (21 bp):
AAAAAATCCATATTAAAAACC
Found at i:26261462 original size:13 final size:13
Alignment explanation
Indices: 26261444--26261468 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26261434 TTTTTGGGTT
26261444 TTTTTTCTTTTTC
1 TTTTTTCTTTTTC
26261457 TTTTTTCTTTTT
1 TTTTTTCTTTTT
26261469 GTGTCATAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTCTTTTTC
Found at i:26263372 original size:14 final size:14
Alignment explanation
Indices: 26263341--26263373 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
26263331 TTGGTTTTTT
*
26263341 ATTTTTAATTAATC
1 ATTTTTAATTAAGC
26263355 -TTTTTAATTAAGC
1 ATTTTTAATTAAGC
26263368 ATTTTT
1 ATTTTT
26263374 TTATTTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (14 bp):
ATTTTTAATTAAGC
Found at i:26263785 original size:15 final size:15
Alignment explanation
Indices: 26263762--26263792 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26263752 TTATTTAACT
26263762 TTATAAATTAAAAAA
1 TTATAAATTAAAAAA
*
26263777 TTATTAATTAAAAAA
1 TTATAAATTAAAAAA
26263792 T
1 T
26263793 AAATTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
TTATAAATTAAAAAA
Found at i:26263869 original size:47 final size:48
Alignment explanation
Indices: 26263777--26263870 Score: 122
Period size: 48 Copynumber: 2.0 Consensus size: 48
26263767 AATTAAAAAA
*
26263777 TTATTAATTAAAAAATAAATTAAAATAAAAAACTTGAAAATAATATAT
1 TTATTAATTAAAAAATAAATTAAAATAAAAAACTTGAAAACAATATAT
* *
26263825 TTATTAATTAAAAATATTAAATT-AGA-AAAAAGCTTG-AAACAATATA
1 TTATTAATTAAAAA-A-TAAATTAAAATAAAAAACTTGAAAACAATATA
26263871 AAATAAAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
47 9 0.22
48 23 0.56
49 3 0.07
50 6 0.15
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.33
Consensus pattern (48 bp):
TTATTAATTAAAAAATAAATTAAAATAAAAAACTTGAAAACAATATAT
Found at i:26280998 original size:23 final size:22
Alignment explanation
Indices: 26280953--26280995 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
26280943 TAACAGATCA
26280953 TCTATAAAAAATGAATAAATTG
1 TCTATAAAAAATGAATAAATTG
26280975 TCTATAAAAAATGAATAAATT
1 TCTATAAAAAATGAATAAATT
26280996 TGTTAACGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.33
Consensus pattern (22 bp):
TCTATAAAAAATGAATAAATTG
Found at i:26286619 original size:21 final size:23
Alignment explanation
Indices: 26286595--26286643 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 23
26286585 CAAATTAAAG
26286595 AAAAAATTAATCATT-TAT-ATT
1 AAAAAATTAATCATTGTATAATT
* * *
26286616 AAAAATTTCATCTTTGTATAATT
1 AAAAAATTAATCATTGTATAATT
26286639 AAAAA
1 AAAAA
26286644 TTAGCATGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 12 0.52
22 3 0.13
23 8 0.35
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (23 bp):
AAAAAATTAATCATTGTATAATT
Found at i:26286621 original size:20 final size:22
Alignment explanation
Indices: 26286596--26286646 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
26286586 AAATTAAAGA
26286596 AAAAATTAATCATT-TAT-ATT
1 AAAAATTAATCATTGTATAATT
* *
26286616 AAAAATTTCATCTTTGTATAATT
1 AAAAA-TTAATCATTGTATAATT
26286639 AAAAATTA
1 AAAAATTA
26286647 GCATGATTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
20 5 0.20
21 7 0.28
22 5 0.20
23 8 0.32
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (22 bp):
AAAAATTAATCATTGTATAATT
Found at i:26287224 original size:18 final size:17
Alignment explanation
Indices: 26287201--26287239 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
26287191 GTTTCCTACA
* *
26287201 TAATATAATTAGATTATT
1 TAATATAAATA-AATATT
26287219 TAATATAAATAAATATT
1 TAATATAAATAAATATT
26287236 TAAT
1 TAAT
26287240 TATGATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (17 bp):
TAATATAAATAAATATT
Found at i:26304941 original size:12 final size:13
Alignment explanation
Indices: 26304920--26304948 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
26304910 TGAGATAATG
26304920 TTTTATTTTTTAT
1 TTTTATTTTTTAT
26304933 TTTTA-TTTTTAT
1 TTTTATTTTTTAT
26304945 TTTT
1 TTTT
26304949 TCTCTCATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:26305678 original size:18 final size:17
Alignment explanation
Indices: 26305651--26305684 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
26305641 GGCCAGGCTA
26305651 TGTGGGCCACACGGGCG
1 TGTGGGCCACACGGGCG
26305668 TGTGAGGCCACACGGGC
1 TGTG-GGCCACACGGGC
26305685 AAGCCATACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.15, C:0.29, G:0.44, T:0.12
Consensus pattern (17 bp):
TGTGGGCCACACGGGCG
Found at i:26312036 original size:12 final size:13
Alignment explanation
Indices: 26312015--26312043 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
26312005 TGAGATAATG
26312015 TTTTATTTTTTAT
1 TTTTATTTTTTAT
26312028 TTTTA-TTTTTAT
1 TTTTATTTTTTAT
26312040 TTTT
1 TTTT
26312044 TCTCTCATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:26312791 original size:18 final size:17
Alignment explanation
Indices: 26312748--26312795 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 17
26312738 AGGCCAATCT
*
26312748 GGGCATGTGGGCTACAC
1 GGGCATGTGGGCCACAC
* *
26312765 GTGCGTGTGGGTCCACAC
1 GGGCATGTGGG-CCACAC
26312783 GGGCATGTGGGCC
1 GGGCATGTGGGCC
26312796 TAGGATTCTG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
17 11 0.44
18 14 0.56
ACGTcount: A:0.12, C:0.25, G:0.44, T:0.19
Consensus pattern (17 bp):
GGGCATGTGGGCCACAC
Found at i:26325413 original size:22 final size:21
Alignment explanation
Indices: 26325387--26325429 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
26325377 ATGACCTTAA
26325387 AATTT-ATCTGTTCGAACGTGTT
1 AATTTCAT-TGTTC-AACGTGTT
*
26325409 AATTTCATTGTTCAATGTGTT
1 AATTTCATTGTTCAACGTGTT
26325430 GTTATTTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 7 0.37
22 10 0.53
23 2 0.11
ACGTcount: A:0.23, C:0.12, G:0.16, T:0.49
Consensus pattern (21 bp):
AATTTCATTGTTCAACGTGTT
Found at i:26326474 original size:34 final size:34
Alignment explanation
Indices: 26326431--26326495 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
26326421 AATGCTTTAG
26326431 ATGTGAATCGATATACATATAGTTAGAATAGAGA
1 ATGTGAATCGATATACATATAGTTAGAATAGAGA
* * *
26326465 ATGTGAATCGGTATATATATAGTTGGAATAG
1 ATGTGAATCGATATACATATAGTTAGAATAG
26326496 GTTAATAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.40, C:0.05, G:0.23, T:0.32
Consensus pattern (34 bp):
ATGTGAATCGATATACATATAGTTAGAATAGAGA
Found at i:26330044 original size:37 final size:36
Alignment explanation
Indices: 26329992--26330121 Score: 156
Period size: 37 Copynumber: 3.6 Consensus size: 36
26329982 TAGTGCTGTG
*
26329992 GCGTGTTATCTGTTGGATTAGCTCTTATGAGCATTT
1 GCGTGTTATCGGTTGGATTAGCTCTTATGAGCATTT
* *
26330028 AGCGTGTTATCGGTTGGATTATCTCTTATGAGCGTTT
1 -GCGTGTTATCGGTTGGATTAGCTCTTATGAGCATTT
* *
26330065 GGCGTGTTATCAGG-TGGATTAGCTCTTATGAGAAATT
1 -GCGTGTTATC-GGTTGGATTAGCTCTTATGAGCATTT
*
26330102 GACGTGTT-TCTGTTGGATTA
1 G-CGTGTTATCGGTTGGATTA
26330122 CTTGTGTACT
Statistics
Matches: 81, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
35 1 0.01
36 10 0.12
37 68 0.84
38 2 0.02
ACGTcount: A:0.18, C:0.12, G:0.28, T:0.42
Consensus pattern (36 bp):
GCGTGTTATCGGTTGGATTAGCTCTTATGAGCATTT
Found at i:26331266 original size:54 final size:54
Alignment explanation
Indices: 26331126--26331272 Score: 206
Period size: 54 Copynumber: 2.7 Consensus size: 54
26331116 GTGGCTTGAC
* *
26331126 TCAGTGAGTTACACGGGCAGGGACATAGGCTAGGACATGACAGTGTGGCCCGAA
1 TCAGTGAGTTACACGGGCAGGGACATAGGCTGGGACATGACAGTGTGGCCCAAA
* * *
26331180 TGAGTGAGTTACACGGGCAGGGACATAGGCTGGGACTTGACCGTGTGGCCCAAA
1 TCAGTGAGTTACACGGGCAGGGACATAGGCTGGGACATGACAGTGTGGCCCAAA
* * *
26331234 TCAGTGAGTTACATGGGCAGGGGCA-CGAGCTGGGACATG
1 TCAGTGAGTTACACGGGCAGGGACATAG-GCTGGGACATG
26331273 GTCGTGTGTC
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 1 0.01
54 81 0.99
ACGTcount: A:0.25, C:0.20, G:0.37, T:0.18
Consensus pattern (54 bp):
TCAGTGAGTTACACGGGCAGGGACATAGGCTGGGACATGACAGTGTGGCCCAAA
Found at i:26332809 original size:152 final size:152
Alignment explanation
Indices: 26332528--26332834 Score: 542
Period size: 152 Copynumber: 2.0 Consensus size: 152
26332518 ACATATCACC
* *
26332528 TTATTACTTGATTCGACGTGTATACTTGTACAAATCACGTATCATTTCACACGTGAAAAGTTTTT
1 TTATTACTTGATTCGACGTGTATACTTGCACAAATCACATATCATTTCACACGTGAAAAGTTTTT
** *
26332593 GGCGTTGTTACCGGGGATCAACAATTTGGTGTAATTTGGTTTGGTTATTTTACTTAATTCCATTA
66 GGCGCCGTTACCAGGGATCAACAATTTGGTGTAATTTGGTTTGGTTATTTTACTTAATTCCATTA
26332658 GTTTTATTTAACTTAGTTTAAT
131 GTTTTATTTAACTTAGTTTAAT
*
26332680 TTATTACTTGATTCGACGTGTATACTTGCACAAATCACATATCATTTCACACGTGACAAGTTTTT
1 TTATTACTTGATTCGACGTGTATACTTGCACAAATCACATATCATTTCACACGTGAAAAGTTTTT
* *
26332745 GGCGCCGTTGCCAGGGATCAACAATTTGGTGTAATTTGGTTTGGTTATTTTACTTAATTTCATTA
66 GGCGCCGTTACCAGGGATCAACAATTTGGTGTAATTTGGTTTGGTTATTTTACTTAATTCCATTA
26332810 GTTTTATTTAACTTAGTTTAAT
131 GTTTTATTTAACTTAGTTTAAT
26332832 TTA
1 TTA
26332835 ATTTCTACAG
Statistics
Matches: 147, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
152 147 1.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.44
Consensus pattern (152 bp):
TTATTACTTGATTCGACGTGTATACTTGCACAAATCACATATCATTTCACACGTGAAAAGTTTTT
GGCGCCGTTACCAGGGATCAACAATTTGGTGTAATTTGGTTTGGTTATTTTACTTAATTCCATTA
GTTTTATTTAACTTAGTTTAAT
Found at i:26332827 original size:15 final size:15
Alignment explanation
Indices: 26332798--26332835 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
26332788 GTTATTTTAC
*
26332798 TTAATTTCA-TTAGT
1 TTAATTTAACTTAGT
*
26332812 TTTATTTAACTTAGT
1 TTAATTTAACTTAGT
26332827 TTAATTTAA
1 TTAATTTAA
26332836 TTTCTACAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (15 bp):
TTAATTTAACTTAGT
Found at i:26343740 original size:20 final size:20
Alignment explanation
Indices: 26343680--26343768 Score: 81
Period size: 20 Copynumber: 4.5 Consensus size: 20
26343670 TATCAATCAT
* * *
26343680 AGTGCAATCAGAGGCACTAG
1 AGTGCAAACAGAGGCACCAA
* * *
26343700 AGTGCAAATAGAGACAACAA
1 AGTGCAAACAGAGGCACCAA
*
26343720 AGTGTGAAA-AGAGGCACCAA
1 AGTG-CAAACAGAGGCACCAA
* *
26343740 AATGCAAACAGAGGCACCGA
1 AGTGCAAACAGAGGCACCAA
26343760 AGTGCAAAC
1 AGTGCAAAC
26343769 TCGTACAAGC
Statistics
Matches: 54, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
19 3 0.06
20 48 0.89
21 3 0.06
ACGTcount: A:0.45, C:0.19, G:0.26, T:0.10
Consensus pattern (20 bp):
AGTGCAAACAGAGGCACCAA
Found at i:26346510 original size:25 final size:25
Alignment explanation
Indices: 26346482--26346556 Score: 97
Period size: 25 Copynumber: 3.2 Consensus size: 25
26346472 ATTTATACCT
26346482 GAATACATAGCTAATACATACATTC
1 GAATACATAGCTAATACATACATTC
*
26346507 GAATATATA--T-ATACAT--ATTC
1 GAATACATAGCTAATACATACATTC
*
26346527 GAATACATAGCTAATACATACATTT
1 GAATACATAGCTAATACATACATTC
26346552 GAATA
1 GAATA
26346557 TATATATACA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
20 12 0.29
22 7 0.17
23 7 0.17
25 16 0.38
ACGTcount: A:0.45, C:0.15, G:0.08, T:0.32
Consensus pattern (25 bp):
GAATACATAGCTAATACATACATTC
Found at i:26346535 original size:45 final size:45
Alignment explanation
Indices: 26346482--26346571 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
26346472 ATTTATACCT
26346482 GAATACATAGCTAATACATACATTCGAATATATATATACATATTC
1 GAATACATAGCTAATACATACATTCGAATATATATATACATATTC
*
26346527 GAATACATAGCTAATACATACATTTGAATATATATATACATATTC
1 GAATACATAGCTAATACATACATTCGAATATATATATACATATTC
26346572 ATCATATACA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.34
Consensus pattern (45 bp):
GAATACATAGCTAATACATACATTCGAATATATATATACATATTC
Found at i:26347023 original size:41 final size:41
Alignment explanation
Indices: 26346921--26347029 Score: 146
Period size: 41 Copynumber: 2.7 Consensus size: 41
26346911 ACCGGCTTTT
* * * * * *
26346921 AGCCTGCTAGACCTATAGTCCGAAATGTATCACCGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGAATTATATCACCGGCATCA
*
26346962 AGCCTGCTAGACGTAAAGTCTGAATTATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAATTATATCACCGGCATCA
*
26347003 AGCCTGCTAGACGTAAAGTCTGTATTA
1 AGCCTGCTAGACGTAAAGTCTGAATTA
26347030 CATTTGATCA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAATTATATCACCGGCATCA
Found at i:26353604 original size:18 final size:18
Alignment explanation
Indices: 26353581--26353617 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
26353571 CAACCAGAAC
26353581 ACAAACCCACAAAATCAA
1 ACAAACCCACAAAATCAA
*
26353599 ACAAACCCTCAAAATCAA
1 ACAAACCCACAAAATCAA
26353617 A
1 A
26353618 ATCAGCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.32, G:0.00, T:0.08
Consensus pattern (18 bp):
ACAAACCCACAAAATCAA
Found at i:26357931 original size:42 final size:42
Alignment explanation
Indices: 26357884--26357966 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
26357874 TACAACATAC
* * *
26357884 AGTAACAATCTGGGACTGATCCCTAAGTAGTAATAGTCTGGT
1 AGTAACAATCTAGGACTGAGCCCTAAGCAGTAATAGTCTGGT
* *
26357926 AGTAACAGTCTAGGCCTGAGCCCTAAGCAGTAATAGTCTGG
1 AGTAACAATCTAGGACTGAGCCCTAAGCAGTAATAGTCTGG
26357967 GCCTGAGCCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (42 bp):
AGTAACAATCTAGGACTGAGCCCTAAGCAGTAATAGTCTGGT
Found at i:26357969 original size:28 final size:28
Alignment explanation
Indices: 26357926--26358031 Score: 133
Period size: 28 Copynumber: 3.8 Consensus size: 28
26357916 ATAGTCTGGT
26357926 AGTAACAGTCTAGGCCTGAGCCCTAAGC
1 AGTAACAGTCTAGGCCTGAGCCCTAAGC
* * *
26357954 AGTAATAGTCTGGGCCTGAGCCATAAGC
1 AGTAACAGTCTAGGCCTGAGCCCTAAGC
* * *
26357982 AGTAATAGTCTAGGCCTTAGCCCAAAGC
1 AGTAACAGTCTAGGCCTGAGCCCTAAGC
* *
26358010 AGTAACAGTGT-GGCCTTAGCCC
1 AGTAACAGTCTAGGCCTGAGCCC
26358032 AATACAGAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
27 11 0.16
28 58 0.84
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.21
Consensus pattern (28 bp):
AGTAACAGTCTAGGCCTGAGCCCTAAGC
Found at i:26358043 original size:27 final size:27
Alignment explanation
Indices: 26357994--26358045 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
26357984 TAATAGTCTA
*
26357994 GGCCTTAGCCCAAAGCAGTAACAGTGT
1 GGCCTTAGCCCAAAGCAGAAACAGTGT
26358021 GGCCTTAGCCCAATA-CAGAAACAGT
1 GGCCTTAGCCCAA-AGCAGAAACAGT
26358046 ACAGTGTAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.33, C:0.27, G:0.23, T:0.17
Consensus pattern (27 bp):
GGCCTTAGCCCAAAGCAGAAACAGTGT
Found at i:26358409 original size:27 final size:26
Alignment explanation
Indices: 26358379--26358653 Score: 246
Period size: 27 Copynumber: 10.2 Consensus size: 26
26358369 TATAAAAATT
**
26358379 ATTTTACCCTAT-AGTGGTATTTTGGTC
1 ATTTTACCCT-TCAG-GGTATTTCAGTC
* * * *
26358406 ATTTTATCTTTCAGGGGTATTTCGGTT
1 ATTTTACCCTTCA-GGGTATTTCAGTC
* * *
26358433 ATTTTACCCTTCGGGGAATTTCGGTC
1 ATTTTACCCTTCAGGGTATTTCAGTC
* * * *
26358459 ATTGTACCTTTCGAGGGTATTTCGGTA
1 ATTTTACCCTTC-AGGGTATTTCAGTC
26358486 ATTTTACCCTTCGAGGGTATTTCAGTC
1 ATTTTACCCTTC-AGGGTATTTCAGTC
* *
26358513 ATTTTACCCTTTGAGGGTATTTCAGTT
1 ATTTTACCC-TTCAGGGTATTTCAGTC
*
26358540 ATTTTACCCTTCGAGGGTATTTTAGTC
1 ATTTTACCCTTC-AGGGTATTTCAGTC
* * *
26358567 ATTTTACACTTCGATGGTATTTTAGTC
1 ATTTTACCCTTC-AGGGTATTTCAGTC
* * *
26358594 ATTTTACCCTTTAAGGGCATTTTAGTC
1 ATTTTACCC-TTCAGGGTATTTCAGTC
*
26358621 ATTTTACCCTTCAAGGGTATTTCTGTC
1 ATTTTACCCTTC-AGGGTATTTCAGTC
26358648 ATTTTA
1 ATTTTA
26358654 GACCTATTAC
Statistics
Matches: 208, Mismatches: 33, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
26 26 0.12
27 177 0.85
28 5 0.02
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.45
Consensus pattern (26 bp):
ATTTTACCCTTCAGGGTATTTCAGTC
Found at i:26358571 original size:81 final size:81
Alignment explanation
Indices: 26358394--26358653 Score: 301
Period size: 81 Copynumber: 3.2 Consensus size: 81
26358384 ACCCTATAGT
* * * * * *
26358394 GGTATTTTGGTCATTTTATCTTTC-AGGGGTATTTCGGTTATTTTACCCTTCG-GGGAATTTCGG
1 GGTATTTTGGTCATTTTACCCTTCGA-GGGTATTTCAGTCATTTTACCCTTTGAGGGAATTTCAG
* *
26358457 TCATTGTACCTTTCGAG
65 TCATTTTACCCTTCGAG
* * *
26358474 GGTATTTCGGTAATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTTGAGGGTATTTCAGT
1 GGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTTGAGGGAATTTCAGT
*
26358539 TATTTTACCCTTCGAG
66 CATTTTACCCTTCGAG
* * * * * * *
26358555 GGTATTTTAGTCATTTTACACTTCGATGGTATTTTAGTCATTTTACCCTTTAAGGGCATTTTAGT
1 GGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTTGAGGGAATTTCAGT
*
26358620 CATTTTACCCTTCAAG
66 CATTTTACCCTTCGAG
26358636 GGTATTTCT-GTCATTTTA
1 GGTATTT-TGGTCATTTTA
26358654 GACCTATTAC
Statistics
Matches: 154, Mismatches: 23, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
80 43 0.28
81 110 0.71
82 1 0.01
ACGTcount: A:0.18, C:0.17, G:0.19, T:0.45
Consensus pattern (81 bp):
GGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTTGAGGGAATTTCAGT
CATTTTACCCTTCGAG
Found at i:26370074 original size:29 final size:29
Alignment explanation
Indices: 26370016--26370074 Score: 68
Period size: 29 Copynumber: 2.0 Consensus size: 29
26370006 CTAGGTTTTC
*
26370016 TTTATTTTTTCTCTGTTCTTTACTTGGGTT
1 TTTATTTTTTCTC-GTTCTTTACTTAGGTT
26370046 TTTA-TTTTTCTC-TTCTTCTACCTTAGGTT
1 TTTATTTTTTCTCGTTCTT-TA-CTTAGGTT
26370075 AGAGTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
27 5 0.19
28 2 0.08
29 15 0.58
30 4 0.15
ACGTcount: A:0.08, C:0.17, G:0.10, T:0.64
Consensus pattern (29 bp):
TTTATTTTTTCTCGTTCTTTACTTAGGTT
Found at i:26371084 original size:16 final size:16
Alignment explanation
Indices: 26371063--26371098 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
26371053 TTTGGTTCGC
26371063 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
26371079 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
26371095 TGTA
1 TGTA
26371099 ATAGCAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:26371355 original size:18 final size:17
Alignment explanation
Indices: 26371334--26371368 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26371324 TTATTATCAA
*
26371334 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
26371352 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26371369 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26371421 original size:157 final size:157
Alignment explanation
Indices: 26371221--26371537 Score: 571
Period size: 157 Copynumber: 2.0 Consensus size: 157
26371211 TAGAATACCC
*
26371221 TTAGCATAAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* * *
26371286 TTATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATCAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATCAAATATATTATAATTAAAA
26371351 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
* *
26371378 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
*
26371443 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATCAAATATATTATAATTAAAA
26371508 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
26371535 TTA
1 TTA
26371538 ATATTCTTAT
Statistics
Matches: 153, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
157 153 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.47
Consensus pattern (157 bp):
TTAGCAGAAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATCAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:26371508 original size:16 final size:16
Alignment explanation
Indices: 26371471--26371512 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
26371461 TTAATCATAT
*
26371471 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
26371487 TT-AAATATATTATAA
1 TTAAAATATATTATAA
26371502 TTAAAATATAT
1 TTAAAATATAT
26371513 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:26371519 original size:14 final size:15
Alignment explanation
Indices: 26371480--26371521 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
26371470 TTTAAACATA
*
26371480 ATTATTATTAAATAT
1 ATTATAATTAAATAT
26371495 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
26371509 A-TATAATTTAATA
1 ATTATAATTAAATA
26371522 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:26371621 original size:157 final size:154
Alignment explanation
Indices: 26371276--26371622 Score: 333
Period size: 157 Copynumber: 2.2 Consensus size: 154
26371266 AAATTTTAAT
* *
26371276 AAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATCAAATATATT
1 AAGATAATTAATAT-AATAAT-AATATTTTAATCATATTTAAACATAATTATTATCAAATATATT
* * * * * ** *
26371341 TTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAAATTTGTTTTGGTAAATTAT
64 ATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAATTAA
* * * * * * * *
26371406 TATTGTTATTGTTATTTAAATTTTAAT
129 TATTGATACTATAAATGAAAATTT-AG
* * *
26371433 AAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATT
1 AAGATAATTAATAT-AATAAT-AATATTTTAATCATATTTAAACATAATTATTATCAAATATATT
* **
26371498 ATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAA
64 ATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACA--CAAATATG-ATTTACT-AAA
26371563 TCATAATATATGATACTATAAATGAAAATTT-G
125 T--TAATAT-TGATACTATAAATGAAAATTTAG
*
26371595 AA-ATAATTAATAT-ATCAT-ATATTTTAAT
1 AAGATAATTAATATAATAATAATATTTTAAT
26371623 TAAAATATAT
Statistics
Matches: 158, Mismatches: 25, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
157 111 0.70
159 8 0.05
160 4 0.03
161 14 0.09
162 2 0.01
163 5 0.03
164 14 0.09
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.45
Consensus pattern (154 bp):
AAGATAATTAATATAATAATAATATTTTAATCATATTTAAACATAATTATTATCAAATATATTAT
AATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAATTAATA
TTGATACTATAAATGAAAATTTAG
Found at i:26371738 original size:92 final size:91
Alignment explanation
Indices: 26371634--26371870 Score: 232
Period size: 92 Copynumber: 2.6 Consensus size: 91
26371624 AAAATATATG
* * *
26371634 ATTTAATAAAATTT-AAAATAATT-ATAACTAATAAATTATATTTTATGAATTTGTATAATTTAA
1 ATTTAATAAAATTTCAAAA-AATTCATAA-TAATAAATTATATTATATGAATTTATACAATTTAA
*
26371697 AATAA-TAATTATTACATATAATTTAATA
64 AATAATTAA-TATTAAATATAATTTAATA
* * * * * *
26371725 ATTTAAATTAAATTTCATAAAATTCTTGATAATATATTATCTTATATGAATTTATACAATTTAAA
1 ATTT-AATAAAATTTCAAAAAATTCATAATAATAAATTATATTATATGAATTTATACAATTTAAA
26371790 ATAATTAATATTAAATATAATTTAAT-
65 ATAATTAATATTAAATATAATTTAATA
* * * * * *
26371816 AGTGATATATAATTTCATAAAATTCTTAATAATAAAATGT-TCTTATATGAATTTA
1 ATTTA-ATAAAATTTCAAAAAATTCATAATAAT-AAAT-TATATTATATGAATTTA
26371871 CTAAAATCAA
Statistics
Matches: 123, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
90 1 0.01
91 30 0.24
92 83 0.67
93 9 0.07
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (91 bp):
ATTTAATAAAATTTCAAAAAATTCATAATAATAAATTATATTATATGAATTTATACAATTTAAAA
TAATTAATATTAAATATAATTTAATA
Found at i:26384841 original size:10 final size:10
Alignment explanation
Indices: 26384828--26384868 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
26384818 AAAATTAGCC
26384828 TAATTAACTA
1 TAATTAACTA
26384838 TAATTAACTA
1 TAATTAACTA
*
26384848 -AACTTAATTA
1 TAA-TTAACTA
26384858 TAATTAA-TA
1 TAATTAACTA
26384867 TA
1 TA
26384869 GTTGGTAGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
9 6 0.21
10 20 0.71
11 2 0.07
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (10 bp):
TAATTAACTA
Found at i:26387625 original size:22 final size:22
Alignment explanation
Indices: 26387600--26387651 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
26387590 TCAATGTCAC
* **
26387600 GACATCCAGAAGCCAATGTTGT
1 GACATCCAGAAGCAAACATTGT
**
26387622 GACATCCCTAAGCAAACATTGT
1 GACATCCAGAAGCAAACATTGT
26387644 GACATCCA
1 GACATCCA
26387652 ACTTTGAGTC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (22 bp):
GACATCCAGAAGCAAACATTGT
Found at i:26403490 original size:42 final size:42
Alignment explanation
Indices: 26403408--26403587 Score: 172
Period size: 42 Copynumber: 4.3 Consensus size: 42
26403398 CGGTGGATTT
* *
26403408 AGCACTTAGCAACCACC-TTAAATTCAGTGATACAGTGAATC
1 AGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATC
** *
26403449 AATACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATC
1 AGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATC
* * *
26403491 GGCACATAGCAACC-CCTTTCACAA-TCAAATG-TACGGTGGAATC
1 AGCACTTAGCAACCACCTTT-A-AATTC-AGTGATACGG-GGAATC
* * * *
26403534 AGCACTTAGCAACCACCTTTAGAA-TCAATAATTCGAGGAATC
1 AGCACTTAGCAACCACCTTTA-AATTCAGTGATACGGGGAATC
26403576 AGCACTTAGCAA
1 AGCACTTAGCAA
26403588 GCCCTCGGGG
Statistics
Matches: 115, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
41 20 0.17
42 60 0.52
43 30 0.26
44 5 0.04
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (42 bp):
AGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATC
Found at i:26406671 original size:14 final size:14
Alignment explanation
Indices: 26406652--26406678 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26406642 CTATTTTATA
26406652 TCAATAAAATTGGC
1 TCAATAAAATTGGC
26406666 TCAATAAAATTGG
1 TCAATAAAATTGG
26406679 GTTTTCTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (14 bp):
TCAATAAAATTGGC
Found at i:26421899 original size:40 final size:40
Alignment explanation
Indices: 26421817--26421899 Score: 112
Period size: 40 Copynumber: 2.1 Consensus size: 40
26421807 CTCTTCCCAC
* *
26421817 ATGGCCAAAAGGTTATAAATATAGTTTAAGAAATAGGGCA
1 ATGGCCAAAAGGTTATAAATATAGTTTAAGAAACAAGGCA
* * * *
26421857 ATGGCCATAGGGTTATAAATATAGTTTAAGATACAAGTCA
1 ATGGCCAAAAGGTTATAAATATAGTTTAAGAAACAAGGCA
26421897 ATG
1 ATG
26421900 AGATGGAGAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (40 bp):
ATGGCCAAAAGGTTATAAATATAGTTTAAGAAACAAGGCA
Found at i:26424479 original size:14 final size:14
Alignment explanation
Indices: 26424456--26424490 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
26424446 TAAAACTTTT
26424456 CTTT-AAAACATAA
1 CTTTAAAAACATAA
26424469 CTTTAAAAACATAA
1 CTTTAAAAACATAA
*
26424483 CTTGAAAA
1 CTTTAAAA
26424491 CTTATCTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.54, C:0.14, G:0.03, T:0.29
Consensus pattern (14 bp):
CTTTAAAAACATAA
Found at i:26436551 original size:82 final size:82
Alignment explanation
Indices: 26436414--26436572 Score: 273
Period size: 82 Copynumber: 1.9 Consensus size: 82
26436404 AACATATCGA
* * * * *
26436414 CTATCGGCTTAATCATCTTTAGAGCATAAGCCTCCACTTATATCAAAGCGCATAAGTTACGTACG
1 CTATCGCCTCAATCATCTTTAGAGAATAAGCCTCCACTTATATCAAAGCACATAAGTTACATACG
26436479 CATGGTCAGTGACTAAG
66 CATGGTCAGTGACTAAG
26436496 CTATCGCCTCAATCATCTTTAGAGAATAAGCCTCCACTTATATCAAAGCACATAAGTTACATACG
1 CTATCGCCTCAATCATCTTTAGAGAATAAGCCTCCACTTATATCAAAGCACATAAGTTACATACG
26436561 CATGGTCAGTGA
66 CATGGTCAGTGA
26436573 TTAACTCAAG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
82 72 1.00
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (82 bp):
CTATCGCCTCAATCATCTTTAGAGAATAAGCCTCCACTTATATCAAAGCACATAAGTTACATACG
CATGGTCAGTGACTAAG
Found at i:26438061 original size:17 final size:17
Alignment explanation
Indices: 26438039--26438076 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
26438029 TAGATTTGGG
26438039 TTAAGAAAATTA-TTTAA
1 TTAAG-AAATTAGTTTAA
*
26438056 TTAAGAAATTAGTTTAT
1 TTAAGAAATTAGTTTAA
26438073 TTAA
1 TTAA
26438077 ATTAATTGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (17 bp):
TTAAGAAATTAGTTTAA
Found at i:26444423 original size:29 final size:29
Alignment explanation
Indices: 26444377--26444437 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
26444367 TACTGGTTGT
*
26444377 ACCTATTCATTACAACCAATTTCGATTGC
1 ACCTATTCATTACAACCAATTTCAATTGC
* * *
26444406 ACCTATTCATTGCGACCAATTTTAATTGC
1 ACCTATTCATTACAACCAATTTCAATTGC
26444435 ACC
1 ACC
26444438 AGTCGATGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (29 bp):
ACCTATTCATTACAACCAATTTCAATTGC
Found at i:26445795 original size:263 final size:262
Alignment explanation
Indices: 26445327--26445852 Score: 939
Period size: 263 Copynumber: 2.0 Consensus size: 262
26445317 TGTTTTTTAA
*
26445327 ATTAATTTAGTGTCAAAAAAACCCTTATTCCTGCCCTTTGCTCGTATTGTTTTCTCGAATTTTAT
1 ATTAATTTAGTGTCAAAAAAACCCTTATTCCTGCCCTTTGCTCGTATTATTTTCTCGAATTTTAT
* *
26445392 TACTTTCAATAAAAAATATTATTTTTGTATTTTATTATTTTCTATTATTTCAGTACATTTTGTTT
66 TACTTTCAATAAAAAATATTATTTTCGTATTTTATTATTTTATATTATTTCAGTACATTTTGTTT
*
26445457 GAAATATTTGTATTAATTATTTCTGAATTTTTAAAAAATTTAGTAAAACGCTCTTACTTCGGTCA
131 GAAATATTTGTATTAATTATTTCTGAATTTTTAAAAAATTTAGTAAAACACTCTTACTTCGGTCA
26445522 TTTCTTCGTATTTTTTTCTCCGCATTTTATTACTTTAAAAAATATCATAATTTCTAATTTTATAA
196 TTTCTTCGTATTTTTTT-T-CGCATTTTATTACTTTAAAAAATATCATAATTTCTAATTTTATAA
26445587 ATTT
259 ATTT
* *
26445591 ATTAATTTAGTGTCAAAAAAACCCTTATTCTTGCCCTTTGCTCGTATTATTTTC-CTGAATTTTG
1 ATTAATTTAGTGTCAAAAAAACCCTTATTCCTGCCCTTTGCTCGTATTATTTTCTC-GAATTTTA
*
26445655 TTACTTTCAA-AAAAAATATTATTTTCGTATTTTATTATTTTATATTATTTCAGTATATTTTGTT
65 TTACTTTCAATAAAAAATATTATTTTCGTATTTTATTATTTTATATTATTTCAGTACATTTTGTT
26445719 TGAAATATTTGTATTAATTATTTCTGAATTTTTAAAAAATTTAGTAAAACACTCTTACTTCGGTC
130 TGAAATATTTGTATTAATTATTTCTGAATTTTTAAAAAATTTAGTAAAACACTCTTACTTCGGTC
*
26445784 ATTTCTTCGTATTTTTTTTCGCATTTTATTACTTTAAAAAATATCATAATTTCTAATTTTATAAT
195 ATTTCTTCGTATTTTTTTTCGCATTTTATTACTTTAAAAAATATCATAATTTCTAATTTTATAAA
26445849 TTT
260 TTT
26445852 A
1 A
26445853 CTTTATTTCA
Statistics
Matches: 253, Mismatches: 8, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
261 49 0.19
262 1 0.00
263 134 0.53
264 69 0.27
ACGTcount: A:0.30, C:0.12, G:0.07, T:0.51
Consensus pattern (262 bp):
ATTAATTTAGTGTCAAAAAAACCCTTATTCCTGCCCTTTGCTCGTATTATTTTCTCGAATTTTAT
TACTTTCAATAAAAAATATTATTTTCGTATTTTATTATTTTATATTATTTCAGTACATTTTGTTT
GAAATATTTGTATTAATTATTTCTGAATTTTTAAAAAATTTAGTAAAACACTCTTACTTCGGTCA
TTTCTTCGTATTTTTTTTCGCATTTTATTACTTTAAAAAATATCATAATTTCTAATTTTATAAAT
TT
Found at i:26446293 original size:10 final size:10
Alignment explanation
Indices: 26446278--26446403 Score: 88
Period size: 10 Copynumber: 12.6 Consensus size: 10
26446268 TTCTCTTCTC
26446278 CTTTCCTTTT
1 CTTTCCTTTT
26446288 CTTTCCTTCTT
1 CTTTCCTT-TT
26446299 -TTT-CTTTCT
1 CTTTCCTTT-T
*
26446308 TTTTGCTTCTTCTT
1 CTTT-C--CTT-TT
26446322 CTTTCCTTTT
1 CTTTCCTTTT
26446332 CTTTCCTTCTT
1 CTTTCCTT-TT
26446343 -TTT-C-TTT
1 CTTTCCTTTT
* *
26446350 CTTTCCTCTC
1 CTTTCCTTTT
26446360 CTTTCCTTTT
1 CTTTCCTTTT
*
26446370 CTTTCTTTTT
1 CTTTCCTTTT
26446380 CTTT-C-TTT
1 CTTTCCTTTT
26446388 CTTT-CTTCTT
1 CTTTCCTT-TT
26446398 CTTTCC
1 CTTTCC
26446404 CTCTCCTTCT
Statistics
Matches: 94, Mismatches: 7, Indels: 29
0.72 0.05 0.22
Matches are distributed among these distances:
7 2 0.02
8 13 0.14
9 7 0.07
10 55 0.59
11 8 0.09
13 1 0.01
14 7 0.07
15 1 0.01
ACGTcount: A:0.00, C:0.30, G:0.01, T:0.69
Consensus pattern (10 bp):
CTTTCCTTTT
Found at i:26446297 original size:38 final size:39
Alignment explanation
Indices: 26446255--26446403 Score: 173
Period size: 38 Copynumber: 3.8 Consensus size: 39
26446245 CCTTCTTCTT
26446255 CTTCTTCTTT-TTT-TTCTCTTCTCCTTTCCTTTTCTTTC
1 CTTCTTCTTTCTTTCTT-TCTTCTCCTTTCCTTTTCTTTC
26446293 CTTCTT-TTTCTTTCTTTTTGCTTCTTCTTCTTTCCTTTTCTTTC
1 CTTCTTCTTTCTTTC--TTT-CTTC-TC--CTTTCCTTTTCTTTC
*
26446337 CTTCTT-TTTCTTTCTTTCCTCTCCTTTCCTTTTCTTT-
1 CTTCTTCTTTCTTTCTTTCTTCTCCTTTCCTTTTCTTTC
* *
26446374 CTTTTTCTTTCTTTCTTTCTTCTTCTTTCC
1 CTTCTTCTTTCTTTCTTTCTTCTCCTTTCC
26446404 CTCTCCTTCT
Statistics
Matches: 98, Mismatches: 4, Indels: 18
0.82 0.03 0.15
Matches are distributed among these distances:
37 8 0.08
38 44 0.45
40 3 0.03
41 9 0.09
42 5 0.05
44 29 0.30
ACGTcount: A:0.00, C:0.30, G:0.01, T:0.69
Consensus pattern (39 bp):
CTTCTTCTTTCTTTCTTTCTTCTCCTTTCCTTTTCTTTC
Found at i:26446304 original size:44 final size:44
Alignment explanation
Indices: 26446249--26446401 Score: 159
Period size: 44 Copynumber: 3.4 Consensus size: 44
26446239 CTCCCCCCTT
* *
26446249 CTTCTTCTTCTTCTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTC
1 CTTCTTTTTCTTCTTTTTTTTCTCTTCTTCTTTCCTTTTCTTTC
* *
26446293 CTTCTTTTTCTT-TCTTTTTGCTTCTTCTTCTTTCCTTTTCTTTC
1 CTTCTTTTTCTTCTTTTTTTTC-TCTTCTTCTTTCCTTTTCTTTC
*
26446337 CTTCTTTTTCTTTCTTTCCTCTCCTTTC-CTT-TTCTTTCTTTTTCTTTC
1 CTTCTTTTTC-TTCTTT--T-T--TTTCTCTTCTTCTTTCCTTTTCTTTC
*
26446385 TTTCTTTCTTCTTCTTT
1 CTTCTTT-TTCTTCTTT
26446402 CCCTCTCCTT
Statistics
Matches: 92, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
43 7 0.08
44 42 0.46
45 2 0.02
46 2 0.02
48 29 0.32
49 7 0.08
51 3 0.03
ACGTcount: A:0.00, C:0.29, G:0.01, T:0.70
Consensus pattern (44 bp):
CTTCTTTTTCTTCTTTTTTTTCTCTTCTTCTTTCCTTTTCTTTC
Found at i:26446377 original size:14 final size:14
Alignment explanation
Indices: 26446278--26446402 Score: 93
Period size: 14 Copynumber: 9.1 Consensus size: 14
26446268 TTCTCTTCTC
26446278 CTTTCCTTTTCTTT
1 CTTTCCTTTTCTTT
* *
26446292 CCTTCTTTTTCTTT
1 CTTTCCTTTTCTTT
*
26446306 CTTTTTGCTTCTTC-TT
1 C--TTTCCTT-TTCTTT
26446322 CTTTCCTTTTCTTT
1 CTTTCCTTTTCTTT
* *
26446336 CCTTCTTTTTCTTT
1 CTTTCCTTTTCTTT
*
26446350 CTTTCC---TC-TC
1 CTTTCCTTTTCTTT
26446360 CTTTCCTTTTCTTT
1 CTTTCCTTTTCTTT
*
26446374 CTTT-TTCTTTCTTT
1 CTTTCCT-TTTCTTT
26446388 CTTT-CTTCTTCTTT
1 CTTTCCTT-TTCTTT
26446402 C
1 C
26446403 CCTCTCCTTC
Statistics
Matches: 87, Mismatches: 14, Indels: 20
0.72 0.12 0.17
Matches are distributed among these distances:
10 7 0.08
11 2 0.02
13 7 0.08
14 61 0.70
16 7 0.08
17 3 0.03
ACGTcount: A:0.00, C:0.30, G:0.01, T:0.70
Consensus pattern (14 bp):
CTTTCCTTTTCTTT
Found at i:26446411 original size:82 final size:80
Alignment explanation
Indices: 26446216--26446417 Score: 227
Period size: 82 Copynumber: 2.5 Consensus size: 80
26446206 AAAAATTACC
* * *
26446216 TTTTCTTTCTTTCTTTTTCCTTCCTCCC-C-CCTTCTTCTTCTTCTTCTTTTTTTTCTCTTCTCC
1 TTTTCTTTCTTTCTTTTTCCTTCTTCCCTCTCCTT-TTCTTCTCCTTCTTTTTTTTCTCCTCTCC
26446279 TTTCCTTTTCTTTCCT
65 TTTCCTTTTCTTTCCT
* * * *
26446295 TCTT-TTTCTTTCTTTTTGCTTCTTCTTCTTTCCTTTTCTT-TCCTTCTTTTTCTTTCTTTCCTC
1 TTTTCTTTCTTTCTTTTTCCTTCTTC-CCTCTCCTTTTCTTCTCCTTCTTTTT-TTTC--TCCTC
26446358 TCCTTTCCTTTTCTTT-CT
62 TCCTTTCCTTTTCTTTCCT
*
26446376 TTTTCTTTCTTTCTTTCTT-CTTCTTTCCCTCTCCTTCTCTTC
1 TTTTCTTTCTTTCTTT-TTCCTTC-TTCCCTCTCCTTTTCTTC
26446418 CCCCCACCCA
Statistics
Matches: 102, Mismatches: 11, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
78 19 0.19
79 14 0.14
80 9 0.09
81 9 0.09
82 46 0.45
83 5 0.05
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.66
Consensus pattern (80 bp):
TTTTCTTTCTTTCTTTTTCCTTCTTCCCTCTCCTTTTCTTCTCCTTCTTTTTTTTCTCCTCTCCT
TTCCTTTTCTTTCCT
Found at i:26453471 original size:171 final size:173
Alignment explanation
Indices: 26453186--26453529 Score: 557
Period size: 171 Copynumber: 2.0 Consensus size: 173
26453176 GCTAGGAAGG
* ** *
26453186 TATTTGCGTGAGGAATATCATCGTTTACACAAACAGCAGAACAGTTTTGGGACATCACGTCTATT
1 TATTTGCGTGAGGAATATCATCGTTTACACAAACAGCAAAACAGTTTAAGGACATCACGTCTACT
*
26453251 GGTCAGCTAGTAAAATAAATATACTTTCACAATGGAAGGTTCAAGGGTTGATG-CCTA-CCTATG
66 GGTCAGCTAGTAAAATAAATATACTTTCACAAAGGAAGGTTCAAGGGTTGATGTCCTATCCTATG
26453314 CAAATATCGAACATAGAATCTATCACCTCTTTGAGTCTTTAAC
131 CAAATATCGAACATAGAATCTATCACCTCTTTGAGTCTTTAAC
* * * *
26453357 TATTTGCGTGAGGAATATTATCGTTTACATAAACGGCAAAACAGTTTAAGGACATCGCGTCTACT
1 TATTTGCGTGAGGAATATCATCGTTTACACAAACAGCAAAACAGTTTAAGGACATCACGTCTACT
*
26453422 GGTCAGCTAGTAAAGTAAATATACTTTCACAAAGGAAGGTTCAAGGGTTGATGTCTACCTATCCT
66 GGTCAGCTAGTAAAATAAATATACTTTCACAAAGGAAGGTTCAAGGGTTGATG--T-CCTATCCT
26453487 ATGCAAATATCGAACATAGAATCTATCACCTCTTTGAGTCTTT
128 ATGCAAATATCGAACATAGAATCTATCACCTCTTTGAGTCTTT
26453530 TAAGTCTCAT
Statistics
Matches: 158, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
171 108 0.68
175 4 0.03
176 46 0.29
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (173 bp):
TATTTGCGTGAGGAATATCATCGTTTACACAAACAGCAAAACAGTTTAAGGACATCACGTCTACT
GGTCAGCTAGTAAAATAAATATACTTTCACAAAGGAAGGTTCAAGGGTTGATGTCCTATCCTATG
CAAATATCGAACATAGAATCTATCACCTCTTTGAGTCTTTAAC
Found at i:26453697 original size:18 final size:19
Alignment explanation
Indices: 26453674--26453709 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
26453664 TCTCTTGGTT
26453674 TAATA-TTGAATTTTTTTC
1 TAATATTTGAATTTTTTTC
26453692 TAATATTTGAATTTTTTT
1 TAATATTTGAATTTTTTT
26453710 TCATTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.28, C:0.03, G:0.06, T:0.64
Consensus pattern (19 bp):
TAATATTTGAATTTTTTTC
Found at i:26462230 original size:23 final size:24
Alignment explanation
Indices: 26462178--26462224 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
26462168 TTAGCTCTCA
*
26462178 TGAGCTTCCCGTTATATGGTTCTTG
1 TGAGCTTCCCGTTATA-GGCTCTTG
26462203 TGAGCTTCCCGTTATA-GCTCTT
1 TGAGCTTCCCGTTATAGGCTCTT
26462225 CGGAGCATCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
25 16 0.76
ACGTcount: A:0.13, C:0.23, G:0.21, T:0.43
Consensus pattern (24 bp):
TGAGCTTCCCGTTATAGGCTCTTG
Found at i:26467840 original size:14 final size:14
Alignment explanation
Indices: 26467821--26467847 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26467811 TAATAGCTTG
26467821 ATTTATTTATTTAT
1 ATTTATTTATTTAT
26467835 ATTTATTTATTTA
1 ATTTATTTATTTA
26467848 ATGTTTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
ATTTATTTATTTAT
Found at i:26473180 original size:16 final size:17
Alignment explanation
Indices: 26473154--26473189 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
26473144 ATTTAACTAT
*
26473154 TATCTTATAATAGTTTA
1 TATCTTATAATAGTATA
26473171 TATC-TATAATAGTATA
1 TATCTTATAATAGTATA
26473187 TAT
1 TAT
26473190 ACATATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.50
Consensus pattern (17 bp):
TATCTTATAATAGTATA
Done.