Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 91 of 218
Found at i:26475604 original size:17 final size:18
Alignment explanation
Indices: 26475582--26475623 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
26475572 ATAAATAAGA
*
26475582 ATTTAATTTATTAAA-AT
1 ATTTAATTAATTAAATAT
*
26475599 ATTTAATTAATTAAATTT
1 ATTTAATTAATTAAATAT
26475617 ATTTAAT
1 ATTTAAT
26475624 AAAAAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTAATTAATTAAATAT
Found at i:26478073 original size:21 final size:21
Alignment explanation
Indices: 26478044--26478088 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
26478034 GTGCACTTGC
26478044 TTTAGTCAAATTTTTAATTAG
1 TTTAGTCAAATTTTTAATTAG
*
26478065 TTTATTCAAATTTTTAATTAG
1 TTTAGTCAAATTTTTAATTAG
26478086 TTT
1 TTT
26478089 TGCGATGCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.58
Consensus pattern (21 bp):
TTTAGTCAAATTTTTAATTAG
Found at i:26481753 original size:19 final size:20
Alignment explanation
Indices: 26481729--26481782 Score: 65
Period size: 19 Copynumber: 2.6 Consensus size: 20
26481719 TATAATAAAA
26481729 CTTAATTAATTAAC-TTCAT
1 CTTAATTAATTAACATTCAT
26481748 CTTAATTAATTATACATTCAT
1 CTTAATTAATTA-ACATTCAT
* *
26481769 ATTCAATTAGTTAA
1 CTT-AATTAATTAA
26481783 TTCTAATGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 12 0.40
20 2 0.07
21 8 0.27
22 8 0.27
ACGTcount: A:0.39, C:0.13, G:0.02, T:0.46
Consensus pattern (20 bp):
CTTAATTAATTAACATTCAT
Found at i:26483717 original size:21 final size:21
Alignment explanation
Indices: 26483688--26483734 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
26483678 ATGCTAGCAA
*
26483688 ATAAAAACATCCAAAATACAT
1 ATAACAACATCCAAAATACAT
26483709 ATAACAACATCCAAAATACAT
1 ATAACAACATCCAAAATACAT
26483730 ATAAC
1 ATAAC
26483735 CACAAGAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.60, C:0.21, G:0.00, T:0.19
Consensus pattern (21 bp):
ATAACAACATCCAAAATACAT
Found at i:26484683 original size:21 final size:20
Alignment explanation
Indices: 26484637--26484685 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
26484627 TGTTTAAAAA
26484637 AAATAATTTTAACACTTTTT
1 AAATAATTTTAACACTTTTT
26484657 --ATAATTCTTAATCA-TTTTT
1 AAATAATT-TTAA-CACTTTTT
26484676 AAATAATTTT
1 AAATAATTTT
26484686 TTATAATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
18 6 0.24
19 9 0.36
20 4 0.16
21 6 0.24
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (20 bp):
AAATAATTTTAACACTTTTT
Found at i:26486227 original size:20 final size:19
Alignment explanation
Indices: 26486204--26486244 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
26486194 ATTTAATTTA
26486204 ATAATAAATAAAATATTTTT
1 ATAATAAAT-AAATATTTTT
* *
26486224 ATAATTAATTAATATTTTT
1 ATAATAAATAAATATTTTT
26486243 AT
1 AT
26486245 TTTTAATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATAATAAATAAATATTTTT
Found at i:26486237 original size:19 final size:19
Alignment explanation
Indices: 26486215--26486254 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
26486205 TAATAAATAA
26486215 AATATTTTTATAATTAATT
1 AATATTTTTATAATTAATT
**
26486234 AATATTTTTATTTTTAATT
1 AATATTTTTATAATTAATT
26486253 AA
1 AA
26486255 AAATTATTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
AATATTTTTATAATTAATT
Found at i:26488608 original size:85 final size:84
Alignment explanation
Indices: 26488550--26488732 Score: 222
Period size: 85 Copynumber: 2.2 Consensus size: 84
26488540 TAGGCTGTGT
* * *
26488550 GGGTAGACCATGTATGGCATACGACCGTGTGAAACCATGCAGGCTGTGTGGGGCACATGGCTGCA
1 GGGTAGACCATGTAGGGCAAACGACCGTGTGAAACCATGCAGGCCGTGTGGGGCACATGGCTG-A
26488615 TGAAATCGTGCAGCCCGTGA
65 TGAAATCGTGCAGCCCGTGA
* * * * * *
26488635 GGTTTGACCATGTAGGGCAAACGACCGTGTGAAACCATGCAGGCCGTGTGGGACAAATGGCCGCG
1 GGGTAGACCATGTAGGGCAAACGACCGTGTGAAACCATGCAGGCCGTGTGGGGCACATGGCTG-A
** *
26488700 TGAAATCACGCAGCCCGTGT
65 TGAAATCGTGCAGCCCGTGA
* *
26488720 GGCTTGACCATGT
1 GGGTAGACCATGT
26488733 GAGATTTTGC
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
85 85 1.00
ACGTcount: A:0.23, C:0.23, G:0.33, T:0.20
Consensus pattern (84 bp):
GGGTAGACCATGTAGGGCAAACGACCGTGTGAAACCATGCAGGCCGTGTGGGGCACATGGCTGAT
GAAATCGTGCAGCCCGTGA
Found at i:26489383 original size:5 final size:5
Alignment explanation
Indices: 26489373--26489423 Score: 50
Period size: 5 Copynumber: 10.2 Consensus size: 5
26489363 TAGGACTTTG
*** *
26489373 TATGA TATGA TCCAA TATGA TATGA TATGA TATGA -ATCGA TATGT TATGA
1 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TAT-GA TATGA TATGA
26489423 T
1 T
26489424 TTATGATTTG
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
4 2 0.06
5 32 0.89
6 2 0.06
ACGTcount: A:0.37, C:0.06, G:0.18, T:0.39
Consensus pattern (5 bp):
TATGA
Found at i:26505165 original size:20 final size:19
Alignment explanation
Indices: 26505142--26505206 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
26505132 AAGCTCAAAC
26505142 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
26505162 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
26505182 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
26505202 GAGCT
1 GAGCT
26505207 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:26527764 original size:28 final size:27
Alignment explanation
Indices: 26527701--26527852 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
26527691 ATATTAAGTC
* * *
26527701 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
26527728 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
26527756 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
26527783 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
26527811 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
26527838 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26527853 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:26527785 original size:55 final size:55
Alignment explanation
Indices: 26527701--26527852 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
26527691 ATATTAAGTC
* * *
26527701 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
26527756 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
26527811 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
26527853 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:26535811 original size:28 final size:27
Alignment explanation
Indices: 26535748--26535899 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
26535738 ATATTAAGTC
* * *
26535748 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
26535775 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
26535803 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
26535830 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
26535858 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
26535885 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26535900 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:26535832 original size:55 final size:55
Alignment explanation
Indices: 26535748--26535899 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
26535738 ATATTAAGTC
* * *
26535748 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
26535803 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
26535858 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
26535900 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:26542309 original size:13 final size:13
Alignment explanation
Indices: 26542291--26542315 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26542281 TACTAATGTA
26542291 ATTAATGAAAGTG
1 ATTAATGAAAGTG
26542304 ATTAATGAAAGT
1 ATTAATGAAAGT
26542316 AATGAGAAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (13 bp):
ATTAATGAAAGTG
Found at i:26542613 original size:27 final size:27
Alignment explanation
Indices: 26542561--26542613 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
26542551 TTCAATAATT
* * *
26542561 ATATAAGTTATTAAAAAATTTCAAAAA
1 ATATAAATTATTAAAAAATATAAAAAA
26542588 ATATAAATTATT-AAAAATAATAAAAA
1 ATATAAATTATTAAAAAAT-ATAAAAA
26542614 TGAAATTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (27 bp):
ATATAAATTATTAAAAAATATAAAAAA
Found at i:26549188 original size:21 final size:21
Alignment explanation
Indices: 26549137--26549189 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
26549127 TTTTTTAAAA
26549137 ATTTT-AAAT-ATATTTTATG
1 ATTTTCAAATAATATTTTATG
*
26549156 A-TTTCTAGATAATATTTTATG
1 ATTTTC-AAATAATATTTTATG
26549177 ATTTTCAAATAAT
1 ATTTTCAAATAAT
26549190 CATATTAGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 3 0.11
19 1 0.04
20 3 0.11
21 17 0.61
22 4 0.14
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.53
Consensus pattern (21 bp):
ATTTTCAAATAATATTTTATG
Found at i:26550715 original size:12 final size:12
Alignment explanation
Indices: 26550692--26550729 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
26550682 ACATGCACAG
*
26550692 TCAGATTCAGAT
1 TCAGATTTAGAT
*
26550704 TTAGATTTAGAT
1 TCAGATTTAGAT
26550716 TCAGATTTAGAT
1 TCAGATTTAGAT
26550728 TC
1 TC
26550730 GGACTCATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.42
Consensus pattern (12 bp):
TCAGATTTAGAT
Found at i:26550717 original size:18 final size:18
Alignment explanation
Indices: 26550694--26550728 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
26550684 ATGCACAGTC
26550694 AGATTCAGATTTAGATTT
1 AGATTCAGATTTAGATTT
26550712 AGATTCAGATTTAGATT
1 AGATTCAGATTTAGATT
26550729 CGGACTCATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.06, G:0.17, T:0.43
Consensus pattern (18 bp):
AGATTCAGATTTAGATTT
Found at i:26553794 original size:17 final size:18
Alignment explanation
Indices: 26553772--26553810 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26553762 TGGTGAGCTT
*
26553772 TGGAAA-ACAAGACATTG
1 TGGAAATACAAGACAATG
*
26553789 TGGAAATACAAGTCAATG
1 TGGAAATACAAGACAATG
26553807 TGGA
1 TGGA
26553811 GATTCGTGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.44, C:0.10, G:0.26, T:0.21
Consensus pattern (18 bp):
TGGAAATACAAGACAATG
Found at i:26554498 original size:29 final size:29
Alignment explanation
Indices: 26554443--26554515 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 29
26554433 GCCTGAATTA
* * * *
26554443 AATTTAAATAATAAAATTATTTGTAATTTT
1 AATTTAAATAA-AAAAGTATATATAATATT
*
26554473 AATTTAAATGAAAAAGTATATATAATATT
1 AATTTAAATAAAAAAGTATATATAATATT
* *
26554502 AATTAAAATTAAAA
1 AATTTAAATAAAAA
26554516 TTTTTAATTT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 26 0.72
30 10 0.28
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (29 bp):
AATTTAAATAAAAAAGTATATATAATATT
Found at i:26558862 original size:17 final size:17
Alignment explanation
Indices: 26558840--26558913 Score: 58
Period size: 17 Copynumber: 4.4 Consensus size: 17
26558830 TTATGATGGA
*
26558840 GCATGAACTGTTATTTT
1 GCATGAACTATTATTTT
* * **
26558857 GCATGAATTGTTATTCA
1 GCATGAACTATTATTTT
* * *
26558874 GTATGAACTAATATTTC
1 GCATGAACTATTATTTT
**
26558891 AAATGAACTATTATTTT
1 GCATGAACTATTATTTT
26558908 GCATGA
1 GCATGA
26558914 GCTTTCATTT
Statistics
Matches: 42, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 42 1.00
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (17 bp):
GCATGAACTATTATTTT
Found at i:26559766 original size:2 final size:2
Alignment explanation
Indices: 26559759--26559797 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
26559749 GAATTTACAA
26559759 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
26559798 AATAATGCCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:26566329 original size:49 final size:50
Alignment explanation
Indices: 26566231--26566327 Score: 126
Period size: 50 Copynumber: 1.9 Consensus size: 50
26566221 CATTTTATCT
* * *
26566231 TTCTATTAACATTCTTCAATTTTTTTATCTAAATTTTTTTGTCCAAAAGA
1 TTCTACTAACATTCTTAAATTTTTTTATCAAAATTTTTTTGTCCAAAAGA
*
26566281 TTCTACTAACGTTCTTAAATTTTTTATAT-AAATATTTTTTTG-CCAAA
1 TTCTACTAACATTCTTAAATTTTTT-TATCAAA-ATTTTTTTGTCCAAA
26566328 GAATTATACC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
50 29 0.71
51 12 0.29
ACGTcount: A:0.31, C:0.13, G:0.04, T:0.52
Consensus pattern (50 bp):
TTCTACTAACATTCTTAAATTTTTTTATCAAAATTTTTTTGTCCAAAAGA
Found at i:26576224 original size:29 final size:27
Alignment explanation
Indices: 26576191--26576245 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
26576181 TAAATATATT
* *
26576191 TACATGTACATATATATGAAAAAAAATTA
1 TACATATACAAAT-TAT-AAAAAAAATTA
*
26576220 TACATATATAAATTATAAAAAAAATT
1 TACATATACAAATTATAAAAAAAATT
26576246 CATCATGGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 10 0.43
28 3 0.13
29 10 0.43
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.33
Consensus pattern (27 bp):
TACATATACAAATTATAAAAAAAATTA
Found at i:26577071 original size:15 final size:15
Alignment explanation
Indices: 26577047--26577084 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
26577037 TTATTCGTAT
26577047 GTAAAAAAAATAAAA
1 GTAAAAAAAATAAAA
*
26577062 GTAAATAAAATAAAA
1 GTAAAAAAAATAAAA
*
26577077 TTAAAAAA
1 GTAAAAAA
26577085 CTATAAATCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.18
Consensus pattern (15 bp):
GTAAAAAAAATAAAA
Found at i:26577753 original size:45 final size:44
Alignment explanation
Indices: 26577704--26577826 Score: 131
Period size: 45 Copynumber: 2.7 Consensus size: 44
26577694 AGTGCTTCAA
* *
26577704 TCTACTCCACTGTAATGTCAGGGAGGTAGGATTTGATTTCTTGGG
1 TCTACTCCACTGCAAT-TCAGGGAGGTAGGATTTGATTTCTTGAG
* * * *
26577749 TCTACCCCACTGCAATTTCAGGG-GGATAAGACTTGCTTTCTTGAG
1 TCTACTCCACTGCAA-TTCAGGGAGG-TAGGATTTGATTTCTTGAG
* *
26577794 TCTGCTCCACTGCAACTTCAGGGAGATAGGATT
1 TCTACTCCACTGCAA-TTCAGGGAGGTAGGATT
26577827 ATTGGCTTTA
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
44 2 0.03
45 59 0.94
46 2 0.03
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (44 bp):
TCTACTCCACTGCAATTCAGGGAGGTAGGATTTGATTTCTTGAG
Found at i:26578232 original size:44 final size:45
Alignment explanation
Indices: 26578092--26578228 Score: 129
Period size: 44 Copynumber: 3.1 Consensus size: 45
26578082 AAGACTGATG
*
26578092 TCTTCAATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTA
1 TCTTCAATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTA
* * * * ** * * * *
26578137 TTTTTAACCTGCTCCGCTGT-A-ACCTAGGGAGGCAAG-GCTGGTG
1 TCTTCAATCTGCTTCGCTGTCAGTGC-AGGAAGGCAAGATCTGCTA
*
26578180 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCT-
1 TCTTCAATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTA
26578224 TCTTC
1 TCTTC
26578229 GATCCACTTC
Statistics
Matches: 67, Mismatches: 21, Indels: 9
0.69 0.22 0.09
Matches are distributed among these distances:
43 20 0.30
44 26 0.39
45 21 0.31
ACGTcount: A:0.18, C:0.25, G:0.27, T:0.30
Consensus pattern (45 bp):
TCTTCAATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTA
Found at i:26578299 original size:44 final size:43
Alignment explanation
Indices: 26578206--26578575 Score: 390
Period size: 44 Copynumber: 8.5 Consensus size: 43
26578196 CTGTCAGTGC
* *
26578206 AGGAAGGCAAGATCTGCT-TCTTCGATCCACTTCCTACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCC-ACCAATAT
* *
26578249 AGGAAGACAAGATCTGCTATCTTTGATCTACTTCACACCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-CACCAATAT
* * * *
26578293 ATGAAGACAAGATCTACTTTCTTCGATCTACTTTGCCACCAGTAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTAC-TT-CCACCAATAT
* * *
26578338 GGGAAGACAAGATCTGC-ATCTTCGATCCATTTCCTACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCC-ACCAATAT
* * *
26578381 AGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-CACCAATAT
* * * *
26578425 ATGAAGAAAAGATCTGCTTTCTTTGATCTACTTCGCCACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTT--CCACCAATAT
* *
26578470 GGGAAGACAAGA--T-CTAGTCTTCGATCCACTTCCTACCAATAT
1 AGGAAGACAAGATCTGCTA-TCTTCGATCTACTTCC-ACCAATAT
* * *
26578512 AGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-CACCAATAT
*
26578556 ATGAAGACAAGATCTGCTAT
1 AGGAAGACAAGATCTGCTAT
26578576 TTTTTAGCCT
Statistics
Matches: 269, Mismatches: 43, Indels: 29
0.79 0.13 0.09
Matches are distributed among these distances:
41 2 0.01
42 22 0.08
43 54 0.20
44 144 0.54
45 45 0.17
46 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
AGGAAGACAAGATCTGCTATCTTCGATCTACTTCCACCAATAT
Found at i:26578493 original size:87 final size:86
Alignment explanation
Indices: 26578206--26578573 Score: 384
Period size: 87 Copynumber: 4.2 Consensus size: 86
26578196 CTGTCAGTGC
*
26578206 AGGAAGGCAAGATCTGCTTCTTCGATCCACTTCCTACCAATATAGGAAGACAAGATCTGCTATCT
1 AGGAAGACAAGATCTGC-TCTTCGATCCACTTCCTACCAATATAGGAAGACAAGATCTGCTATCT
* * *
26578271 TTGATCTACTTCACACCAATAC
65 TCGATCTACTTCCCACCAATAT
* * * * *
26578293 ATGAAGACAAGATCTACTTTCTTCGATCTACTTTGCC-ACCAGTATGGGAAGACAAGATCTGC-A
1 AGGAAGACAAGATCTGC--TCTTCGATCCAC-TT-CCTACCAATATAGGAAGACAAGATCTGCTA
* * *
26578356 TCTTCGATCCATTTCCTACCAATAT
62 TCTTCGATCTACTTCCCACCAATAT
* * * * * * *
26578381 AGGAAGACAGGATCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGAAAAGATCTGCTTT
1 AGGAAGACAAGATCTGC--TCTTCGATCCACTTC-CTACCAATATAGGAAGACAAGATCTGCTAT
*
26578445 CTTTGATCTACTTCGCCACCAATAT
63 CTTCGATCTACTTC-CCACCAATAT
* *
26578470 GGGAAGACAAGATCTAG-TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCT
1 AGGAAGACAAGATCT-GCTCTTCGATCCACTTCCTACCAATATAGGAAGACAAGATCTGCTATCT
* * *
26578534 TCGATCTACTTCACGCCAATAC
65 TCGATCTACTTCCCACCAATAT
*
26578556 ATGAAGACAAGATCTGCT
1 AGGAAGACAAGATCTGCT
26578574 ATTTTTTAGC
Statistics
Matches: 230, Mismatches: 42, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
85 1 0.00
86 23 0.10
87 85 0.37
88 71 0.31
89 47 0.20
90 3 0.01
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (86 bp):
AGGAAGACAAGATCTGCTCTTCGATCCACTTCCTACCAATATAGGAAGACAAGATCTGCTATCTT
CGATCTACTTCCCACCAATAT
Found at i:26578549 original size:131 final size:131
Alignment explanation
Indices: 26578207--26578573 Score: 610
Period size: 132 Copynumber: 2.8 Consensus size: 131
26578197 TGTCAGTGCA
* *
26578207 GGAAGGCAAGATCTGCTTCTTCGATCCACTTCCTACCAATATAGGAAGACAAGATCTGCTATCTT
1 GGAAGACAAGATCTGC-TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTT
* * * * *
26578272 TGATCTACTTCACACCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTTGCCACCAGTA
65 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATA
26578337 TG
130 TG
*
26578339 GGAAGACAAGATCTGCATCTTCGATCCATTTCCTACCAATATAGGAAGACAGGATCTGCTATCTT
1 GGAAGACAAGATCTGC-TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTT
* *
26578404 CGATCTACTTCACGCCAATACATGAAGAAAAGATCTGCTTTCTTTGATCTACTTCGCCACCAATA
65 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATA
26578469 TG
130 TG
26578471 GGAAGACAAGATCTAG-TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTT
1 GGAAGACAAGATCT-GCTCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTT
26578535 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
65 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
26578574 ATTTTTTAGC
Statistics
Matches: 221, Mismatches: 13, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
131 85 0.38
132 135 0.61
133 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (131 bp):
GGAAGACAAGATCTGCTCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTC
GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATAT
G
Found at i:26580882 original size:42 final size:42
Alignment explanation
Indices: 26580832--26580914 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
26580822 ATTCACGATT
** *
26580832 CTTCGCATATAGTAATATATTTTGGTACCAGGGACGATTATG
1 CTTCGCATATAACAATATATCTTGGTACCAGGGACGATTATG
*
26580874 CTTCGCATATAACAATATATCTTGGTACTAGGGACGATTAT
1 CTTCGCATATAACAATATATCTTGGTACCAGGGACGATTAT
26580915 TATTCTCCAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (42 bp):
CTTCGCATATAACAATATATCTTGGTACCAGGGACGATTATG
Found at i:26593090 original size:18 final size:18
Alignment explanation
Indices: 26593038--26593091 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 18
26593028 TGTATTATAA
* *
26593038 TATTAATTAATAAAACAT
1 TATTACTTAATAAAATAT
*
26593056 TATTACTTATTAAAATAT
1 TATTACTTAATAAAATAT
*
26593074 TATTACTTAATATAATAT
1 TATTACTTAATAAAATAT
26593092 AATTTAAAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (18 bp):
TATTACTTAATAAAATAT
Found at i:26598425 original size:16 final size:16
Alignment explanation
Indices: 26598404--26598436 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
26598394 ACACTTACGC
26598404 TTCCCAAATTGTCAGA
1 TTCCCAAATTGTCAGA
26598420 TTCCCAAATTGTCAGA
1 TTCCCAAATTGTCAGA
26598436 T
1 T
26598437 CTGAGTCGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (16 bp):
TTCCCAAATTGTCAGA
Found at i:26604389 original size:14 final size:14
Alignment explanation
Indices: 26604366--26604396 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26604356 AATAATTACT
*
26604366 AAATATAATAAATA
1 AAATAAAATAAATA
26604380 AAATAAAATAAATA
1 AAATAAAATAAATA
26604394 AAA
1 AAA
26604397 AGAAAAAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAATAAAATAAATA
Found at i:26613299 original size:29 final size:31
Alignment explanation
Indices: 26613239--26613303 Score: 91
Period size: 29 Copynumber: 2.2 Consensus size: 31
26613229 AACAGATATC
*
26613239 AATCATGCAGTGAACAATATGTAATATCATT
1 AATCATGCAGTGAACAATATGTAAAATCATT
26613270 AATCGATGCAGT-AACAATA-G-AAAATCATT
1 AATC-ATGCAGTGAACAATATGTAAAATCATT
26613299 AATCA
1 AATCA
26613304 GTGTAGATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
28 1 0.03
29 12 0.38
30 1 0.03
31 11 0.34
32 7 0.22
ACGTcount: A:0.46, C:0.14, G:0.12, T:0.28
Consensus pattern (31 bp):
AATCATGCAGTGAACAATATGTAAAATCATT
Found at i:26613722 original size:27 final size:26
Alignment explanation
Indices: 26613703--26614352 Score: 662
Period size: 27 Copynumber: 24.3 Consensus size: 26
26613693 GGGTATAACA
*
26613703 GTCATTTTAACCTATGGGGGTATTTC
1 GTCATTTTACCCTATGGGGGTATTTC
*
26613729 GATTATTTTACCCTATGGGGGTATTTC
1 G-TCATTTTACCCTATGGGGGTATTTC
* *
26613756 GATCATTCTACCCTATGAGGGTATTTC
1 G-TCATTTTACCCTATGGGGGTATTTC
26613783 GATCATTTTACCCTATGGGGGTATTTC
1 G-TCATTTTACCCTATGGGGGTATTTC
* * *
26613810 GGCCATTTTACCCTATGAGGGTATTTTG
1 -GTCATTTTACCCTATGGGGGTA-TTTC
*
26613838 GTCATTTTACCCTATAGGGGTATTTC
1 GTCATTTTACCCTATGGGGGTATTTC
*
26613864 AGTCATTTTACCCTATGGGGGTATTTTG
1 -GTCATTTTACCCTATGGGGGTA-TTTC
* *
26613892 GTCATTTTACCCTATAGGGGTATTTTT
1 GTCATTTTACCCTATGGGGGTA-TTTC
* * *
26613919 ATCATTCTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTA-TTTC
*
26613946 GTTATTTTACCCTATGGGGGTATTTC
1 GTCATTTTACCCTATGGGGGTATTTC
**
26613972 GGTCATTTTACCC--TGTAGGTATTTC
1 -GTCATTTTACCCTATGGGGGTATTTC
* ** ** *
26613997 AGTTATTTTACCCGGTGGGGACATTTTG
1 -GTCATTTTACCCTATGGGGGTA-TTTC
* *
26614025 GTCATTTTACCCTATGAGGGTATTCC
1 GTCATTTTACCCTATGGGGGTATTTC
* **
26614051 AGTCATTCTACCCTATGCAGGTATTTC
1 -GTCATTTTACCCTATGGGGGTATTTC
*
26614078 GGTCATTTTACCCTATGAGGGTATTTC
1 -GTCATTTTACCCTATGGGGGTATTTC
26614105 GATCATTTTACCCTATGGGGGTATTTC
1 G-TCATTTTACCCTATGGGGGTATTTC
*
26614132 GGTCATTTTACCCTAT-GAGGTATTTC
1 -GTCATTTTACCCTATGGGGGTATTTC
* * *
26614158 GATCATTCTACCCTAT-AGGGTATTTTG
1 G-TCATTTTACCCTATGGGGGTA-TTTC
*
26614185 GTTATTTTACCCTAT-GGGGTATTTC
1 GTCATTTTACCCTATGGGGGTATTTC
* * *
26614210 TATCATTTTACCTTATAGGGGTATTTC
1 -GTCATTTTACCCTATGGGGGTATTTC
*
26614237 GATCATTTTACCCTATAGGGGTATTTC
1 G-TCATTTTACCCTATGGGGGTATTTC
* * *
26614264 GATCATTTTATCCTATAGGGGTATTCC
1 G-TCATTTTACCCTATGGGGGTATTTC
*
26614291 GGTCATTTTACCTTATGGGGGTATTTC
1 -GTCATTTTACCCTATGGGGGTATTTC
*
26614318 AGTCATTTTATCCTATGGGGGTATTTC
1 -GTCATTTTACCCTATGGGGGTATTTC
26614345 GGTCATTT
1 -GTCATTT
26614353 ATTGACCTCT
Statistics
Matches: 529, Mismatches: 77, Indels: 35
0.83 0.12 0.05
Matches are distributed among these distances:
25 25 0.05
26 65 0.12
27 427 0.81
28 12 0.02
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (26 bp):
GTCATTTTACCCTATGGGGGTATTTC
Found at i:26613778 original size:54 final size:54
Alignment explanation
Indices: 26613703--26614352 Score: 778
Period size: 54 Copynumber: 12.1 Consensus size: 54
26613693 GGGTATAACA
* * *
26613703 GTCATTTTAACCTATGGGGGTATTTCGATTATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCG
* *
26613757 ATCATTCTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCG
* * * * *
26613811 GCCATTTTACCCTATGAGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTCA
1 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCG
* * * * **
26613865 GTCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTTT
1 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCG
* * * * * *
26613919 ATCATTCTACCCTATGGGGGTATTTTGGTTATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCG
* * ** ** *
26613973 GTCATTTTACCCTGT-A-GGTATTTC-AGTTATTTTACCCGGTGGGGACATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCGA-TCATTTTACCCTATGGGGGTATTTCG
* * **
26614025 GTCATTTTACCCTATGAGGGTA-TTCCAGTCATTCTACCCTATGCAGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCGA-TCATTTTACCCTATGGGGGTATTTCG
26614079 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCG
* * *
26614133 GTCATTTTACCCTATGA-GGTATTTCGATCATTCTACCCTAT-AGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCG
* * * *
26614185 GTTATTTTACCCTATG-GGGTATTTCTATCATTTTACCTTATAGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCG
* * * *
26614238 ATCATTTTACCCTAT-AGGGGTATTTCGATCATTTTATCCTATAGGGGTATTCCG
1 GTCATTTTACCCTATGA-GGGTATTTCGATCATTTTACCCTATGGGGGTATTTCG
* * *
26614292 GTCATTTTACCTTATGGGGGTATTTC-AGTCATTTTATCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCGA-TCATTTTACCCTATGGGGGTATTTCG
26614346 GTCATTT
1 GTCATTT
26614353 ATTGACCTCT
Statistics
Matches: 518, Mismatches: 67, Indels: 22
0.85 0.11 0.04
Matches are distributed among these distances:
52 87 0.17
53 50 0.10
54 377 0.73
55 4 0.01
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (54 bp):
GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCG
Found at i:26613818 original size:81 final size:81
Alignment explanation
Indices: 26613704--26614352 Score: 735
Period size: 81 Copynumber: 8.1 Consensus size: 81
26613694 GGTATAACAG
* * * *
26613704 TCATTTTAACCTATGGGGGTATTTCGATTATTTTACCCTATGGGGGTATTTCGATCATTCTACCC
1 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGATCATTTTACCC
26613769 TATGAGGGTATTTCGA
66 TATGAGGGTATTTCGA
* * * *
26613785 TCATTTTACCCTATGGGGGTATTTCGGCCATTTTACCCTATGAGGGTATTTTGGTCATTTTACCC
1 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGATCATTTTACCC
26613850 TAT-AGGGGTATTTC-A
66 TATGA-GGGTATTTCGA
* * ** *
26613865 GTCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTTTATCATTCTACC
1 -TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGATCATTTTACC
* * *
26613930 CTATGGGGGTATTTTGG
65 CTATGAGGGTATTTCGA
* ** *
26613947 TTATTTTACCCTATGGGGGTATTTCGGTCATTTTACCC--TGTAGGTATTTC-AGTTATTTTACC
1 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGA-TCATTTTACC
** * * *
26614009 CGGTG-GGGACATTTTGG
65 CTATGAGGG-TATTTCGA
* * * * ** *
26614026 TCATTTTACCCTATGAGGGTATTCCAGTCATTCTACCCTATGCAGGTATTTCGGTCATTTTACCC
1 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGATCATTTTACCC
26614091 TATGAGGGTATTTCGA
66 TATGAGGGTATTTCGA
* *
26614107 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT-GAGGTATTTCGATCATTCTACCC
1 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGATCATTTTACCC
* *
26614171 TAT-AGGGTATTTTGG
66 TATGAGGGTATTTCGA
* ** * *
26614186 TTATTTTACCCTAT-GGGGTATTTCTATCATTTTACCTTATAGGGGTATTTCGATCATTTTACCC
1 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGATCATTTTACCC
26614250 TAT-AGGGGTATTTCGA
66 TATGA-GGGTATTTCGA
* * * * *
26614266 TCATTTTATCCTATAGGGGTATTCCGGTCATTTTACCTTATGGGGGTATTTC-AGTCATTTTATC
1 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGA-TCATTTTACC
* *
26614330 CTATGGGGGTATTTCGG
65 CTATGAGGGTATTTCGA
26614347 TCATTT
1 TCATTT
26614353 ATTGACCTCT
Statistics
Matches: 485, Mismatches: 68, Indels: 30
0.83 0.12 0.05
Matches are distributed among these distances:
78 27 0.06
79 107 0.22
80 47 0.10
81 301 0.62
82 3 0.01
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (81 bp):
TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGATCATTTTACCC
TATGAGGGTATTTCGA
Found at i:26617710 original size:25 final size:25
Alignment explanation
Indices: 26617668--26617721 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
26617658 AAATGGATGC
*
26617668 GTTTGGAGGGTATATTTGGTTGTGT
1 GTTTGGAGGCTATATTTGGTTGTGT
*
26617693 GTTTGGAGGCTATGTTTGGTTGTGT
1 GTTTGGAGGCTATATTTGGTTGTGT
26617718 -TTTG
1 GTTTG
26617722 TGAGTGATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 4 0.15
25 23 0.85
ACGTcount: A:0.09, C:0.02, G:0.39, T:0.50
Consensus pattern (25 bp):
GTTTGGAGGCTATATTTGGTTGTGT
Found at i:26621935 original size:30 final size:27
Alignment explanation
Indices: 26621870--26621949 Score: 119
Period size: 25 Copynumber: 2.9 Consensus size: 27
26621860 ATCCATATTT
26621870 ATGGAAAGTCAAAGATATGGGTATCAA
1 ATGGAAAGTCAAAGATATGGGTATCAA
26621897 AT--AAAGTCAAAGATATGGGTATCAAA
1 ATGGAAAGTCAAAGATATGGGTATC-AA
26621923 TATTGGAAAGTCAAAGATATGGGTATC
1 -A-TGGAAAGTCAAAGATATGGGTATC
26621950 GCGATATTGG
Statistics
Matches: 48, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
25 21 0.44
26 2 0.04
27 3 0.06
28 1 0.02
30 21 0.44
ACGTcount: A:0.44, C:0.07, G:0.24, T:0.25
Consensus pattern (27 bp):
ATGGAAAGTCAAAGATATGGGTATCAA
Found at i:26622111 original size:2 final size:2
Alignment explanation
Indices: 26622104--26622144 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
26622094 AAGGTATTGT
26622104 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
26622145 TTGTAAATTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:26626533 original size:30 final size:30
Alignment explanation
Indices: 26626469--26626557 Score: 116
Period size: 30 Copynumber: 3.1 Consensus size: 30
26626459 TCCATATTTA
*
26626469 TGGAAAGTCAAAGTTATGGGTATC-AA-A-
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
26626496 T--AAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
26626524 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
26626555 TGG
1 TGG
26626558 CATAAGAAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 8
0.84 0.03 0.12
Matches are distributed among these distances:
25 20 0.37
26 2 0.04
27 2 0.04
28 1 0.02
30 21 0.39
31 8 0.15
ACGTcount: A:0.40, C:0.07, G:0.26, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:26631993 original size:16 final size:16
Alignment explanation
Indices: 26631968--26631999 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26631958 AGATCATAAA
26631968 ATATAGATATGTATAT
1 ATATAGATATGTATAT
*
26631984 ATATATATATGTATAT
1 ATATAGATATGTATAT
26632000 GTTTTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (16 bp):
ATATAGATATGTATAT
Found at i:26635218 original size:22 final size:23
Alignment explanation
Indices: 26635193--26635246 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
26635183 TTATAAATTC
26635193 AATTTAA-ATGATATAAT-ATAAT
1 AATTTAACAT-ATATAATAATAAT
*
26635215 AATTTCAAGCATATTTAATAATAAT
1 AATTT-AA-CATATATAATAATAAT
26635240 AATTTAA
1 AATTTAA
26635247 TTATAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 5 0.19
23 2 0.07
24 8 0.30
25 12 0.44
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.41
Consensus pattern (23 bp):
AATTTAACATATATAATAATAAT
Found at i:26637126 original size:21 final size:20
Alignment explanation
Indices: 26637100--26637148 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
26637090 ATTATTTAGT
26637100 TATTATTATATATATTATTA
1 TATTATTATATATATTATTA
* * *
26637120 CTATTATCATCTTTATTATTA
1 -TATTATTATATATATTATTA
26637141 TAGTTATT
1 TA-TTATT
26637149 TTTATAGTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (20 bp):
TATTATTATATATATTATTA
Found at i:26637147 original size:12 final size:11
Alignment explanation
Indices: 26637088--26637165 Score: 54
Period size: 12 Copynumber: 6.9 Consensus size: 11
26637078 TTTAGCAATT
26637088 TTATTATT-TA
1 TTATTATTATA
26637098 GTTATTATTATA
1 -TTATTATTATA
26637110 TATATTATTACTA
1 T-TATTATTA-TA
* *
26637123 TTATCA-TCT-
1 TTATTATTATA
26637132 TTATTATTATA
1 TTATTATTATA
*
26637143 GTTATTTTTATA
1 -TTATTATTATA
*
26637155 GTTATTTTTAT
1 -TTATTATTAT
26637166 TTACTTATGT
Statistics
Matches: 56, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
9 5 0.09
10 3 0.05
11 10 0.18
12 35 0.62
13 3 0.05
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (11 bp):
TTATTATTATA
Found at i:26643785 original size:170 final size:170
Alignment explanation
Indices: 26643503--26644698 Score: 1655
Period size: 170 Copynumber: 7.0 Consensus size: 170
26643493 ATTATACACA
* * *
26643503 TCTTATTTCCCTAAGATTACGGTGGAACAGACCGAAAAATTACAGATCTTATCTCCCTGAGATTA
1 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTACAGATCTTATCTCCCTGAGATTA
** *
26643568 CAGCGGAGCAGATTGAATATAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAAGAT
66 CAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGGAT
*
26643633 CTTATCTCTCTGAAGTTACAGTAGAGTAGATCACACCAGG
131 CTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGG
*
26643673 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAAAATTACAGATCTTATCTCCCTGAGATTA
1 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTACAGATCTTATCTCCCTGAGATTA
**
26643738 CAGCGGAGCAGATTGAATATAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGGAT
66 CAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGGAT
26643803 CTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGG
131 CTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGG
**
26643843 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTTAGATCTTATCTCCCTGAGATTA
1 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTACAGATCTTATCTCCCTGAGATTA
*
26643908 CAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAGGAT
66 CAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGGAT
* *
26643973 CTTATCTCTCTAAAGTTACAGTAGAGTAGATCGTACCAGG
131 CTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGG
**
26644013 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTTAGATCTTATCTCCCTGAGATTA
1 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTACAGATCTTATCTCCCTGAGATTA
26644078 CAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGGAT
66 CAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGGAT
* * *
26644143 CTTATCTCTCTAAAGTTACAGTAGAATAGATCGCACCATG
131 CTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGG
* *
26644183 TTTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTA
1 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTACAGATCTTATCTCCCTGAGATTA
*
26644248 CAACGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGGAT
66 CAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGGAT
* * *
26644313 CTTATCTCTCTGAAGTTACAGTAGAGTGGATCGTATCAGG
131 CTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGG
* * * *
26644353 TCTTATCTACTTGAGATTACAGTGGAGCAGACCGAAGAATTACAGATCTTATCTCCCTGAGATTA
1 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTACAGATCTTATCTCCCTGAGATTA
** * * * * **
26644418 CAGCGGAGCAGATCAAAGATAGTAATCTTATCTCCCTAAGGTTACAGTGGAGCAGACCGAAGAAT
66 CAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGC-G---GATTAA-
* * ** * ** ** *
26644483 TGCAGATCTTATCTCCCT-AAGATTACAGCGGAGCAGATCAAAGATAGTAA
126 AG--GATCTTATCTCTCTGAAG-TTACAGTAGAGTAGATCGCA-CCAG--G
* ** * ** * *
26644533 TCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAG-A-TAGTA-ATCTTATCTCCGTGAGATT
1 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTA-CAGATCTTATCTCCCTGAGATT
* * *
26644595 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGA-AGTTGCAGCGGAGCGGATTAAAGC
65 ACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA-TTACAGTGGAGCGGATTAAAG-
*
26644659 CACAGATCTTATCTCTCTGAAGTTACAGTAGAGTGGATCG
128 ----GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
26644699 TATCAGGCCT
Statistics
Matches: 932, Mismatches: 77, Indels: 28
0.90 0.07 0.03
Matches are distributed among these distances:
170 760 0.82
171 1 0.00
173 1 0.00
174 8 0.01
175 1 0.00
176 31 0.03
177 31 0.03
178 66 0.07
179 2 0.00
180 31 0.03
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (170 bp):
TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTACAGATCTTATCTCCCTGAGATTA
CAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGGAT
CTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGG
Found at i:26645272 original size:22 final size:20
Alignment explanation
Indices: 26645247--26645286 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
26645237 TGCCACTGCA
26645247 GCCACGTCACGTCACCGCCAAC
1 GCCACGTCAC--CACCGCCAAC
26645269 GCCACGTCACCACCGCCA
1 GCCACGTCACCACCGCCA
26645287 CGGTCATGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
22 10 0.56
ACGTcount: A:0.23, C:0.53, G:0.17, T:0.07
Consensus pattern (20 bp):
GCCACGTCACCACCGCCAAC
Found at i:26646272 original size:3 final size:3
Alignment explanation
Indices: 26646255--26646339 Score: 52
Period size: 3 Copynumber: 27.7 Consensus size: 3
26646245 TTTAGCAATT
* *
26646255 TTA TTA TTTA GTTA TTA TTA TTA -TA TCTA TTA TTA CTA TTA TCA TCT-
1 TTA TTA -TTA -TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T-TA
* *
26646302 TTA CTA TTA TTA -TA GTTA TTA TTA -TA GTTA TTT TTA TT
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA -TTA TTA TTA TT
26646340 TACTTATGTA
Statistics
Matches: 64, Mismatches: 9, Indels: 18
0.70 0.10 0.20
Matches are distributed among these distances:
2 7 0.11
3 44 0.69
4 13 0.20
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:26646287 original size:12 final size:11
Alignment explanation
Indices: 26646267--26646338 Score: 63
Period size: 12 Copynumber: 6.1 Consensus size: 11
26646257 ATTATTTAGT
26646267 TATTATTATTA
1 TATTATTATTA
26646278 TATCTATTATTA
1 TAT-TATTATTA
* *
26646290 CTATTATCATCTT
1 -TATTATTAT-TA
*
26646303 TACTATTATTA
1 TATTATTATTA
26646314 TAGTTATTATTA
1 TA-TTATTATTA
*
26646326 TAGTTATTTTTA
1 TA-TTATTATTA
26646338 T
1 T
26646339 TTACTTATGT
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
11 6 0.12
12 40 0.80
13 4 0.08
ACGTcount: A:0.31, C:0.07, G:0.03, T:0.60
Consensus pattern (11 bp):
TATTATTATTA
Found at i:26646667 original size:16 final size:16
Alignment explanation
Indices: 26646630--26646667 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
26646620 TTTGAATGAA
26646630 TGTTTTTAATTTTTAT
1 TGTTTTTAATTTTTAT
26646646 TCGTTTTT-ATATTTTAT
1 T-GTTTTTAAT-TTTTAT
26646663 TGTTT
1 TGTTT
26646668 GTATGTTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.16, C:0.03, G:0.08, T:0.74
Consensus pattern (16 bp):
TGTTTTTAATTTTTAT
Found at i:26647371 original size:195 final size:195
Alignment explanation
Indices: 26647039--26647436 Score: 742
Period size: 195 Copynumber: 2.0 Consensus size: 195
26647029 AAATGAGTAA
*
26647039 AATTTTGGCATTTTTATGTGTTGGGAATTCGAGACATTGTGTCCTAACTTACTGGATATGATGCT
1 AATTTTGGCATTTTTACGTGTTGGGAATTCGAGACATTGTGTCCTAACTTACTGGATATGATGCT
*
26647104 TTCTTTCTCGATTAACGTGGAATATACCATTTTTTTTAAAAAAAATTCATTTTAATACAAGGATC
66 TTCTTTCTCGATTAACGTGGAATATACCATTTTTTTAAAAAAAAATTCATTTTAATACAAGGATC
*
26647169 ATATTTTTAATTTTTCCAAGTTCTCAATTTTTGACATTAAGACATTAAGTAATCAACTAGGTACC
131 ATATTTTTAATTTTTCCAAGTTCTCAATTTTCGACATTAAGACATTAAGTAATCAACTAGGTACC
*
26647234 AATTTTGGTATTTTTACGTGTTGGGAATTCGAGACATTGTGTCCTAACTTACTGGATATGATGCT
1 AATTTTGGCATTTTTACGTGTTGGGAATTCGAGACATTGTGTCCTAACTTACTGGATATGATGCT
*
26647299 TTCTTTCTCGATTAACGTGGAATATGCCATTTTTTTAAAAAAAAATTCATTTTAATACAAGGATC
66 TTCTTTCTCGATTAACGTGGAATATACCATTTTTTTAAAAAAAAATTCATTTTAATACAAGGATC
*
26647364 ATATTTTTAATTTTTCCAAGTTCTCAATTTTCGACATTATGACATTAAGTAATCAACTAGGTACC
131 ATATTTTTAATTTTTCCAAGTTCTCAATTTTCGACATTAAGACATTAAGTAATCAACTAGGTACC
26647429 AATTTTGG
1 AATTTTGG
26647437 GCGTATCGAG
Statistics
Matches: 197, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
195 197 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.41
Consensus pattern (195 bp):
AATTTTGGCATTTTTACGTGTTGGGAATTCGAGACATTGTGTCCTAACTTACTGGATATGATGCT
TTCTTTCTCGATTAACGTGGAATATACCATTTTTTTAAAAAAAAATTCATTTTAATACAAGGATC
ATATTTTTAATTTTTCCAAGTTCTCAATTTTCGACATTAAGACATTAAGTAATCAACTAGGTACC
Found at i:26647721 original size:3 final size:3
Alignment explanation
Indices: 26647713--26647737 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
26647703 ATAACAAATG
26647713 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
26647738 ACCATCAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:26649574 original size:27 final size:26
Alignment explanation
Indices: 26649517--26649586 Score: 87
Period size: 21 Copynumber: 2.8 Consensus size: 26
26649507 TTGTTGCACC
*
26649517 AGAATGAGAGGCTGAGATTGGAGTTAA
1 AGAATGAGAAGCTGAGATTGGAG-TAA
26649544 AGAATGAGAAGCTGAGATT-G-G---
1 AGAATGAGAAGCTGAGATTGGAGTAA
26649565 AGAATGAGAAGCTGAGATTGGA
1 AGAATGAGAAGCTGAGATTGGA
26649587 ATTAGAGAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
21 19 0.47
22 1 0.03
25 1 0.03
26 1 0.03
27 18 0.45
ACGTcount: A:0.39, C:0.04, G:0.37, T:0.20
Consensus pattern (26 bp):
AGAATGAGAAGCTGAGATTGGAGTAA
Found at i:26649594 original size:27 final size:26
Alignment explanation
Indices: 26649517--26649595 Score: 87
Period size: 27 Copynumber: 3.2 Consensus size: 26
26649507 TTGTTGCACC
* *
26649517 AGAATGAGAGGCTGAGATTGGAGTTAA
1 AGAATGAGAAGCTGAGATTGGA-TTAG
26649544 AGAATGAGAAGCTGAGATT-G----G
1 AGAATGAGAAGCTGAGATTGGATTAG
26649565 AGAATGAGAAGCTGAGATTGGAATTAG
1 AGAATGAGAAGCTGAGATTGG-ATTAG
26649592 AGAA
1 AGAA
26649596 GCTCAAAATG
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
21 19 0.43
22 1 0.02
26 1 0.02
27 23 0.52
ACGTcount: A:0.41, C:0.04, G:0.35, T:0.20
Consensus pattern (26 bp):
AGAATGAGAAGCTGAGATTGGATTAG
Found at i:26650070 original size:12 final size:12
Alignment explanation
Indices: 26650053--26650077 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26650043 CCACTCAACA
26650053 ACCTATCTCATT
1 ACCTATCTCATT
26650065 ACCTATCTCATT
1 ACCTATCTCATT
26650077 A
1 A
26650078 GGTACGTGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.32, G:0.00, T:0.40
Consensus pattern (12 bp):
ACCTATCTCATT
Found at i:26662551 original size:41 final size:41
Alignment explanation
Indices: 26662506--26662657 Score: 164
Period size: 41 Copynumber: 3.7 Consensus size: 41
26662496 TTTTGTAAGT
*
26662506 TCAGGCTTTATGCTTAGCAGGCTTTATGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
* *
26662547 TCAGGCTTTATGCCTAGCAGGC-TCAGTGTCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTA-TGCCGGTGAATTATA
* * * * * * *
26662588 TCAGACCTTATGTCTAGCAGGTTTTGTGCCGGTGAAATGTA
1 TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
* *
26662629 TC-GGTCTTTGTGCCTAGCAAGCTTTATGC
1 TCAGG-CTTTATGCCTAGCAGGCTTTATGC
26662658 ACTACACCAA
Statistics
Matches: 89, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
40 3 0.03
41 85 0.96
42 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (41 bp):
TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
Found at i:26662872 original size:41 final size:41
Alignment explanation
Indices: 26662827--26663386 Score: 719
Period size: 41 Copynumber: 13.7 Consensus size: 41
26662817 GAACTTTCGG
**
26662827 GGGCTTTAGCGGCGTTTTTGAGAAAGCGTTGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
* *
26662868 GGGCTTTAGCGACGTTTTTGAGAAATCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
* *
26662909 GGGCTTTAACGGCGTTTTTGAGAAAGCGCTGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
* * **
26662950 AGGCTTTAGCGGCATTTTTGAGAAAGCATCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
* * * *
26662991 TGGCTTTAGCGGCATTTTT-ATAAAGCGCCGCTAATGCTAA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
* * * * * *
26663031 TGGCATTAGTGGCGTTTTTGAGGAAGCGTCGCTAATGCTCC
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
* * *
26663072 GGGCTTTAACGGCATTTTTGAGGAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
*
26663113 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTAA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
* * *
26663154 AGGCTTTAGCGGTGTTTTTGAGAAAGCACCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
* * * * ** *
26663195 TGGCTTTAGCGGCATTTTTTATAAAGCATCGCTAATGCTAA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
* * *
26663236 TGGCTTTAGCGGCGATTTTGAGGAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
**
26663277 GGGCTTTAGCGGCGTTTTTGACG-AAGCGCATCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGA-GAAAGCGCCGCTAATGCTCA
**
26663318 GGGCTTTAGCGGCGTTTTTGAGGGAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
*
26663359 AGGCTTTAGCGGCGTTTTTGAGAAAGCG
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCG
26663387 TCGCGAATTC
Statistics
Matches: 449, Mismatches: 67, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
40 34 0.08
41 414 0.92
42 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
Found at i:26663695 original size:22 final size:22
Alignment explanation
Indices: 26663626--26663723 Score: 67
Period size: 22 Copynumber: 4.5 Consensus size: 22
26663616 AGGGTTTTTG
* *
26663626 GTTTAGGGTATATGGATTA-GA
1 GTTTAAGGTTTATGGATTATGA
* **
26663647 GTTTAAGGTTTA-GGTGTTACCA
1 GTTTAAGGTTTATGG-ATTATGA
* *
26663669 TTTTAAGGTTTATGAATTATGA
1 GTTTAAGGTTTATGGATTATGA
* * *
26663691 GTTTAGGGGTTATGGTTTATG-
1 GTTTAAGGTTTATGGATTATGA
*
26663712 GTTTATGGTTTA
1 GTTTAAGGTTTA
26663724 AAGGCTGGGG
Statistics
Matches: 58, Mismatches: 16, Indels: 6
0.73 0.20 0.08
Matches are distributed among these distances:
20 2 0.03
21 23 0.40
22 32 0.55
23 1 0.02
ACGTcount: A:0.23, C:0.02, G:0.29, T:0.46
Consensus pattern (22 bp):
GTTTAAGGTTTATGGATTATGA
Found at i:26663712 original size:7 final size:7
Alignment explanation
Indices: 26663670--26663723 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
26663660 GTGTTACCAT
*
26663670 TTTAAGG
1 TTTATGG
*
26663677 TTTATGA
1 TTTATGG
*
26663684 ATTATGAG
1 TTTATG-G
*
26663692 TTTAGGG
1 TTTATGG
*
26663699 GTTATGG
1 TTTATGG
26663706 TTTATGG
1 TTTATGG
26663713 TTTATGG
1 TTTATGG
26663720 TTTA
1 TTTA
26663724 AAGGCTGGGG
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
7 33 0.89
8 4 0.11
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (7 bp):
TTTATGG
Found at i:26663775 original size:14 final size:14
Alignment explanation
Indices: 26663612--26663777 Score: 65
Period size: 14 Copynumber: 11.9 Consensus size: 14
26663602 TATCACTATA
*
26663612 GTTTAGGGTTTTTG
1 GTTTAGGGTTTATG
*
26663626 GTTTAGGGTATATG
1 GTTTAGGGTTTATG
* * *
26663640 GATTAGAGTTTAAG
1 GTTTAGGGTTTATG
*
26663654 GTTTAGGTGTTACCAT-
1 GTTTAGG-GTT--TATG
*
26663670 -TTTAAGGTTTATG
1 GTTTAGGGTTTATG
** * *
26663683 AATTATGAGTTTAGG
1 GTTTA-GGGTTTATG
* *
26663698 GGTTATGGTTTATG
1 GTTTAGGGTTTATG
* *
26663712 GTTTATGGTTTAAAG
1 GTTTAGGGTTT-ATG
* * *
26663727 G-CTGGGGTTTAAG
1 GTTTAGGGTTTATG
26663740 GTTTA--G-TTATG
1 GTTTAGGGTTTATG
*
26663751 TGTTAAGGGTTTATG
1 -GTTTAGGGTTTATG
26663766 GTTTAGGGTTTA
1 GTTTAGGGTTTA
26663778 GATTAACTAG
Statistics
Matches: 109, Mismatches: 31, Indels: 24
0.66 0.19 0.15
Matches are distributed among these distances:
11 4 0.04
12 7 0.06
13 4 0.04
14 68 0.62
15 25 0.23
17 1 0.01
ACGTcount: A:0.21, C:0.02, G:0.31, T:0.46
Consensus pattern (14 bp):
GTTTAGGGTTTATG
Found at i:26664051 original size:14 final size:15
Alignment explanation
Indices: 26664025--26664076 Score: 67
Period size: 14 Copynumber: 3.7 Consensus size: 15
26664015 AATAATTATA
26664025 TATGGATTTAGGGAT
1 TATGGATTTAGGGAT
26664040 TATGGA-TTAGGGAT
1 TATGGATTTAGGGAT
26664054 TATGG-TTTAAGGG-T
1 TATGGATTT-AGGGAT
26664068 TA-GGATTTA
1 TATGGATTTA
26664077 AGGTTTAGGG
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.09
14 21 0.62
15 10 0.29
ACGTcount: A:0.27, C:0.00, G:0.33, T:0.40
Consensus pattern (15 bp):
TATGGATTTAGGGAT
Found at i:26664071 original size:21 final size:23
Alignment explanation
Indices: 26664046--26664129 Score: 61
Period size: 22 Copynumber: 3.8 Consensus size: 23
26664036 GGATTATGGA
*
26664046 TTAGGGA-TTATGGTTTA-AGGG
1 TTAGGGATTTAAGGTTTAGAGGG
*
26664067 TTA-GGATTTAAGGTTTAGGGGG
1 TTAGGGATTTAAGGTTTAGAGGG
* * * *
26664089 TTA-GGAGTTAGGGGTTAGGGGG
1 TTAGGGATTTAAGGTTTAGAGGG
*
26664111 TTA-GGAGTTAAGGATTTAG
1 TTAGGGATTTAAGG-TTTAG
26664130 GGTTTAAGAT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
20 3 0.06
21 12 0.23
22 34 0.64
23 4 0.08
ACGTcount: A:0.24, C:0.00, G:0.42, T:0.35
Consensus pattern (23 bp):
TTAGGGATTTAAGGTTTAGAGGG
Found at i:26664092 original size:22 final size:22
Alignment explanation
Indices: 26664064--26664131 Score: 100
Period size: 22 Copynumber: 3.0 Consensus size: 22
26664054 TATGGTTTAA
*
26664064 GGGTTAGGATTTAAGGTTTAGG
1 GGGTTAGGAGTTAAGGTTTAGG
* *
26664086 GGGTTAGGAGTTAGGGGTTAGG
1 GGGTTAGGAGTTAAGGTTTAGG
26664108 GGGTTAGGAGTTAAGGATTTAGG
1 GGGTTAGGAGTTAAGG-TTTAGG
26664131 G
1 G
26664132 TTTAAGATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
22 34 0.85
23 6 0.15
ACGTcount: A:0.22, C:0.00, G:0.47, T:0.31
Consensus pattern (22 bp):
GGGTTAGGAGTTAAGGTTTAGG
Found at i:26664113 original size:15 final size:14
Alignment explanation
Indices: 26664085--26664145 Score: 50
Period size: 15 Copynumber: 4.2 Consensus size: 14
26664075 TAAGGTTTAG
26664085 GGGGTTAGGAGTTA
1 GGGGTTAGGAGTTA
*
26664099 GGGGTTAGGGGGTTA
1 GGGGTTA-GGAGTTA
* *
26664114 GGAGTTAAGGATTTA
1 GGGGTT-AGGAGTTA
* * *
26664129 GGGTTTAAGATTTA
1 GGGGTTAGGAGTTA
26664143 GGG
1 GGG
26664146 ATTCAAGGGT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
14 17 0.45
15 20 0.53
16 1 0.03
ACGTcount: A:0.23, C:0.00, G:0.46, T:0.31
Consensus pattern (14 bp):
GGGGTTAGGAGTTA
Found at i:26664135 original size:7 final size:7
Alignment explanation
Indices: 26664031--26664177 Score: 61
Period size: 7 Copynumber: 20.7 Consensus size: 7
26664021 TATATATGGA
26664031 TTTAGGG
1 TTTAGGG
* *
26664038 ATTATGG
1 TTTAGGG
*
26664045 ATTAGGG
1 TTTAGGG
* *
26664052 ATTATGG
1 TTTAGGG
26664059 TTTAAGGG
1 TTT-AGGG
*
26664067 -TTAGGA
1 TTTAGGG
*
26664073 TTTAAGG
1 TTTAGGG
26664080 TTTAGGGG
1 TTTA-GGG
*
26664088 GTTAGGAG
1 TTTAGG-G
26664096 -TTAGGG
1 TTTAGGG
*
26664102 GTTAGGGG
1 TTTA-GGG
*
26664110 GTTAGGAG
1 TTTAGG-G
* *
26664118 TTAAGGA
1 TTTAGGG
26664125 TTTAGGG
1 TTTAGGG
* *
26664132 TTTAAGA
1 TTTAGGG
26664139 TTTAGGG
1 TTTAGGG
*
26664146 ATTCAAGGG
1 -TT-TAGGG
26664155 -TT-GGG
1 TTTAGGG
26664160 -TTAGGG
1 TTTAGGG
26664166 TTTAGGG
1 TTTAGGG
26664173 TTTAG
1 TTTAG
26664178 ATTAATTAAT
Statistics
Matches: 107, Mismatches: 22, Indels: 22
0.71 0.15 0.15
Matches are distributed among these distances:
5 5 0.05
6 7 0.07
7 68 0.64
8 23 0.21
9 4 0.04
ACGTcount: A:0.23, C:0.01, G:0.40, T:0.36
Consensus pattern (7 bp):
TTTAGGG
Found at i:26664545 original size:14 final size:13
Alignment explanation
Indices: 26664520--26664561 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
26664510 AGATAGAACT
26664520 AATTAGTTTTTTA
1 AATTAGTTTTTTA
26664533 AATTAGCTTTTTTA
1 AATTAG-TTTTTTA
* *
26664547 ATTTA-TATTTTA
1 AATTAGTTTTTTA
26664559 AAT
1 AAT
26664562 ATGTTCTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
12 8 0.32
13 6 0.24
14 11 0.44
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (13 bp):
AATTAGTTTTTTA
Found at i:26664641 original size:14 final size:14
Alignment explanation
Indices: 26664622--26664666 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
26664612 TTAATTATGA
26664622 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
*
26664636 TTATAGTTTATGGT
1 TTATAGTTTAGGGT
* * *
26664650 ATATGGTGTAGGGT
1 TTATAGTTTAGGGT
26664664 TTA
1 TTA
26664667 ATGTTTACGA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:26664710 original size:15 final size:14
Alignment explanation
Indices: 26664690--26664738 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
26664680 ACTATTTTAA
26664690 GGTTTATGGATTAT
1 GGTTTATGGATTAT
*
26664704 GGGTTTAAGGATTAT
1 -GGTTTATGGATTAT
*
26664719 GGTTTATGGTTTAT
1 GGTTTATGGATTAT
*
26664733 TGTTTA
1 GGTTTA
26664739 AGGGTTGGGA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 17 0.57
15 13 0.43
ACGTcount: A:0.20, C:0.00, G:0.29, T:0.51
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:26664710 original size:22 final size:21
Alignment explanation
Indices: 26664685--26664731 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
26664675 GAGTTACTAT
*
26664685 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTAT-GG
*
26664707 TTTAAGGATTATGGTTTATGG
1 TTTAAGGATTATGGATTATGG
26664728 TTTA
1 TTTA
26664732 TTGTTTAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (21 bp):
TTTAAGGATTATGGATTATGG
Found at i:26664724 original size:14 final size:14
Alignment explanation
Indices: 26664690--26664772 Score: 60
Period size: 14 Copynumber: 5.9 Consensus size: 14
26664680 ACTATTTTAA
*
26664690 GGTTTATGGATTAT
1 GGTTTAAGGATTAT
26664704 GGGTTTAAGGATTAT
1 -GGTTTAAGGATTAT
* *
26664719 GGTTTATGGTTTAT
1 GGTTTAAGGATTAT
* * *
26664733 TGTTTAAGGGTT-G
1 GGTTTAAGGATTAT
* *
26664746 GGATTTAAGGGTTAA
1 GG-TTTAAGGATTAT
*
26664761 GGGTTAAGGATT
1 GGTTTAAGGATT
26664773 TAGGGGTTAT
Statistics
Matches: 55, Mismatches: 11, Indels: 5
0.77 0.15 0.07
Matches are distributed among these distances:
13 1 0.02
14 39 0.71
15 15 0.27
ACGTcount: A:0.23, C:0.00, G:0.34, T:0.43
Consensus pattern (14 bp):
GGTTTAAGGATTAT
Found at i:26664774 original size:22 final size:21
Alignment explanation
Indices: 26664736--26664781 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
26664726 GGTTTATTGT
*
26664736 TTAAGGGTTGGGATTTAAGGG
1 TTAAGGGTTAGGATTTAAGGG
*
26664757 TTAAGGGTTAAGGATTTAGGGG
1 TTAAGGGTT-AGGATTTAAGGG
26664779 TTA
1 TTA
26664782 TGTTTTATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.26, C:0.00, G:0.39, T:0.35
Consensus pattern (21 bp):
TTAAGGGTTAGGATTTAAGGG
Found at i:26665558 original size:14 final size:15
Alignment explanation
Indices: 26665539--26665567 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26665529 AAAAATCGAT
26665539 CCCCCCAA-TTCCCC
1 CCCCCCAATTTCCCC
26665553 CCCCCCAATTTCCCC
1 CCCCCCAATTTCCCC
26665568 AAATCGGCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.14, C:0.69, G:0.00, T:0.17
Consensus pattern (15 bp):
CCCCCCAATTTCCCC
Found at i:26668990 original size:43 final size:43
Alignment explanation
Indices: 26668937--26669197 Score: 269
Period size: 43 Copynumber: 6.1 Consensus size: 43
26668927 TTTTTAGTGC
* * * * * *
26668937 CGTTTTTGGGAGAAGCGTCGCTAAAGGTCTTGATCTTTAGCGG
1 CGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGACCTATAGCGG
* ** *
26668980 CGTTTGTGGGAAAAGCGCCGCTAAAGATCAAGACCTTTAGCGG
1 CGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGACCTATAGCGG
* ** ** *
26669023 CGCTTTTTTCGAAAA--GCCGCTAAAGGTCCTGATTTATAACGG
1 CG-TTTGTGGGAAAAGCGCCGCTAAAGGTCCTGACCTATAGCGG
*** *
26669065 CGTTTGTAAAAAAAGCGCCGCTAAAGGTCCT-AGCCTATAACGG
1 CGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGA-CCTATAGCGG
26669108 CGTTTGT-GGAAAAGCGCCGCTAAAGGTCCTGACCTATAGCGG
1 CGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGACCTATAGCGG
* * *
26669150 CGTTTGTGGGGAAAGCGCCGCTAAAGGTCATGATCTATAGCGG
1 CGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGACCTATAGCGG
26669193 CGTTT
1 CGTTT
26669198 ATTTTTAAAA
Statistics
Matches: 183, Mismatches: 29, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
41 8 0.04
42 60 0.33
43 106 0.58
44 9 0.05
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (43 bp):
CGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGACCTATAGCGG
Found at i:26669066 original size:42 final size:43
Alignment explanation
Indices: 26668989--26669214 Score: 135
Period size: 42 Copynumber: 5.3 Consensus size: 43
26668979 GCGTTTGTGG
* ** * * *
26668989 GAAAAGCGCCGCTAAAGATCAAGA-CCTTTAGCGGCGCTTTTTTC
1 GAAAA-CGCCGCTAAAGGTCCTGAGCCTATAACGGCG-TTTTTTA
** * *
26669033 GAAAA-GCCGCTAAAGGTCCTGA-TTTATAACGGCGTTTGTAA
1 GAAAACGCCGCTAAAGGTCCTGAGCCTATAACGGCGTTTTTTA
* * *
26669074 AAAAAGCGCCGCTAAAGGTCCT-AGCCTATAACGGCG-TTTGTG
1 GAAAA-CGCCGCTAAAGGTCCTGAGCCTATAACGGCGTTTTTTA
* ***
26669116 GAAAAGCGCCGCTAAAGGTCCTGA-CCTATAGCGGCGTTTGTGGG
1 GAAAA-CGCCGCTAAAGGTCCTGAGCCTATAACGGCGTTT-TTTA
* * * *
26669160 GAAAGCGCCGCTAAAGGTCATGA-TCTATAGCGGCGTTTATTTTTA
1 GAAAACGCCGCTAAAGGTCCTGAGCCTATAACGGCG--T-TTTTTA
26669205 -AAAACGCCGC
1 GAAAACGCCGC
26669215 AAACATTTGT
Statistics
Matches: 146, Mismatches: 27, Indels: 18
0.76 0.14 0.09
Matches are distributed among these distances:
41 8 0.05
42 57 0.39
43 56 0.38
44 21 0.14
45 2 0.01
46 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (43 bp):
GAAAACGCCGCTAAAGGTCCTGAGCCTATAACGGCGTTTTTTA
Found at i:26669109 original size:85 final size:85
Alignment explanation
Indices: 26668955--26669197 Score: 262
Period size: 85 Copynumber: 2.9 Consensus size: 85
26668945 GGAGAAGCGT
* * *
26668955 CGCTAAAGGTCTTGATCTT-TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGAT-CAAGACCTTT
1 CGCTAAAGGTCCTGAT-TTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCAAGACCTAT
* *
26669018 AGCGGCGCTTTTTTCGAAAA-GC
65 AACGGCG--TTTGTCGAAAACGC
* *** *
26669040 CGCTAAAGGTCCTGATTTATAACGGCGTTTGTAAAAAAAGCGCCGCTAAAGGTCCTAG-CCTATA
1 CGCTAAAGGTCCTGATTTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCAAGACCTATA
*
26669104 ACGGCGTTTGTGGAAAAGCGC
66 ACGGCGTTTGTCGAAAA-CGC
** * * *
26669125 CGCTAAAGGTCCTGACCTATAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGGT-CATGATCTATA
1 CGCTAAAGGTCCTGATTTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCAAGACCTATA
*
26669189 GCGGCGTTT
66 ACGGCGTTT
26669198 ATTTTTAAAA
Statistics
Matches: 131, Mismatches: 22, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
83 9 0.07
84 4 0.03
85 115 0.88
86 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (85 bp):
CGCTAAAGGTCCTGATTTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCAAGACCTATA
ACGGCGTTTGTCGAAAACGC
Found at i:26670217 original size:69 final size:69
Alignment explanation
Indices: 26670139--26670355 Score: 274
Period size: 69 Copynumber: 3.1 Consensus size: 69
26670129 ATGTATTGTG
* * * * ** * *
26670139 TATATGCTGCCCATTTGTTATATATATACTGTTCAATTTTGGTGTAAAAATATTGCTCAATTTGG
1 TATATGCTGCCTATTTGTTATATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGG
*
26670204 TATG
66 TATA
* *
26670208 TATATGCTGCCTAGTTGTTGTATATCTATGCTGTTAAATTTTGGTGT-AAAGTGCTGTTAAATTT
1 TATATGCTGCCTATTTG-T-TATATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTT
26670272 GGTATA
64 GGTATA
** * *
26670278 TATATGCTAACTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGG
1 TATATGCTGCCTATTTGTTATATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGG
26670343 TATA
66 TATA
26670347 TATATGCTG
1 TATATGCTG
26670356 TTAAGTTTTG
Statistics
Matches: 127, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
68 25 0.20
69 46 0.36
70 32 0.25
71 24 0.19
ACGTcount: A:0.27, C:0.09, G:0.19, T:0.45
Consensus pattern (69 bp):
TATATGCTGCCTATTTGTTATATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGG
TATA
Found at i:26670318 original size:24 final size:23
Alignment explanation
Indices: 26670234--26670387 Score: 140
Period size: 24 Copynumber: 6.7 Consensus size: 23
26670224 GTTGTATATC
26670234 TATGCTGTTAAATTTTGGTGTAA
1 TATGCTGTTAAATTTTGGTGTAA
*
26670257 -AGTGCTGTTAAA-TTTGGTATATA
1 TA-TGCTGTTAAATTTTGGTGTA-A
* *
26670280 TATGC---TAACTATTTGCTGTATA
1 TATGCTGTTAAAT-TTTGGTGTA-A
26670302 TATGCTGTTAAATTTTGGTGTAA
1 TATGCTGTTAAATTTTGGTGTAA
* *
26670325 AAGTGCTGTTAAA-TTTGGTATATA
1 TA-TGCTGTTAAATTTTGGTGTA-A
*
26670349 TATGCTGTTAAGTTTTGGTGTAA
1 TATGCTGTTAAATTTTGGTGTAA
*
26670372 AAGTGCTGTTAAATTT
1 TA-TGCTGTTAAATTT
26670388 GGTATGTATA
Statistics
Matches: 106, Mismatches: 13, Indels: 23
0.75 0.09 0.16
Matches are distributed among these distances:
20 3 0.03
22 23 0.22
23 35 0.33
24 41 0.39
25 4 0.04
ACGTcount: A:0.28, C:0.06, G:0.21, T:0.45
Consensus pattern (23 bp):
TATGCTGTTAAATTTTGGTGTAA
Found at i:26670359 original size:47 final size:47
Alignment explanation
Indices: 26670298--26670402 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
26670288 CTATTTGCTG
26670298 TATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTA
1 TATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTA
*
26670345 TATATATGCTGTTAAGTTTTGGTGTAAAAGTGCTGTTAAATTTGGTA
1 TATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTA
*
26670392 TGTATATGCTG
1 TATATATGCTG
26670403 CCCATTTGTT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.28, C:0.05, G:0.23, T:0.45
Consensus pattern (47 bp):
TATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTA
Found at i:26670398 original size:116 final size:116
Alignment explanation
Indices: 26670227--26670480 Score: 352
Period size: 116 Copynumber: 2.2 Consensus size: 116
26670217 CCTAGTTGTT
* *
26670227 GTATATCTATGCTGTTAAATTTTGGTGTAAAGTGCTGTTAAATTTGGTATATATATGCTAACTAT
1 GTATATATATGCTGTTAAATTTTGGTGTAAAGTGCTGTTAAATTTGGTATATATATGCTAACCAT
* * *
26670292 TTGCTGTATATATGCTGT-TAAATTTTGGTGTA-AAAGTGCTGTTAAATTTG
66 TTGCTGTATATAAGCTGTCCAAATTTTAGTGTATAAA-TGCTGTTAAATTTG
* * **
26670342 GTATATATATGCTGTTAAGTTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCTGCCCA
1 GTATATATATGCTGTTAAATTTTGGTGT-AAAGTGCTGTTAAATTTGGTATATATATGCTAACCA
* *
26670407 TTTGTTGTATATAAGCTGTCCAAATTTTAGTGTATAAATGCTGTTTAATTTG
65 TTTGCTGTATATAAGCTGTCCAAATTTTAGTGTATAAATGCTGTTAAATTTG
26670459 GTATATA-ATTGCTGTTCAAATT
1 GTATATATA-TGCTGTT-AAATT
26670481 GATGTATAAG
Statistics
Matches: 122, Mismatches: 12, Indels: 7
0.87 0.09 0.05
Matches are distributed among these distances:
115 26 0.21
116 50 0.41
117 39 0.32
118 7 0.06
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.45
Consensus pattern (116 bp):
GTATATATATGCTGTTAAATTTTGGTGTAAAGTGCTGTTAAATTTGGTATATATATGCTAACCAT
TTGCTGTATATAAGCTGTCCAAATTTTAGTGTATAAATGCTGTTAAATTTG
Found at i:26670465 original size:23 final size:23
Alignment explanation
Indices: 26670235--26670480 Score: 141
Period size: 23 Copynumber: 10.6 Consensus size: 23
26670225 TTGTATATCT
*
26670235 ATGCTGTTAAATTTTGGTGTA-AA
1 ATGCTGTTAAA-TTTGGTATATAA
* *
26670258 GTGCTGTTAAATTTGGTATATAT
1 ATGCTGTTAAATTTGGTATATAA
* * *
26670281 ATGC---TAACTATTTGCTGTATAT
1 ATGCTGTTAA--ATTTGGTATATAA
*
26670303 ATGCTGTTAAATTTTGGTGTA-AA
1 ATGCTGTTAAA-TTTGGTATATAA
*
26670326 AGTGCTGTTAAATTTGGTATATAT
1 A-TGCTGTTAAATTTGGTATATAA
* *
26670350 ATGCTGTTAAGTTTTGGTGTA-AA
1 ATGCTGTTAA-ATTTGGTATATAA
* *
26670373 AGTGCTGTTAAATTTGGTATGTAT
1 A-TGCTGTTAAATTTGGTATATAA
***
26670397 ATGCTG-CCCATTTGTTGTATAT-A
1 ATGCTGTTAAATTTG--GTATATAA
* * *
26670420 A-GCTGTCCAAATTTTAGTGTATAA
1 ATGCTGT-TAAA-TTTGGTATATAA
*
26670444 ATGCTGTTTAATTTGGTATATAA
1 ATGCTGTTAAATTTGGTATATAA
*
26670467 TTGCTGTTCAAATT
1 ATGCTGTT-AAATT
26670481 GATGTATAAG
Statistics
Matches: 171, Mismatches: 32, Indels: 39
0.71 0.13 0.16
Matches are distributed among these distances:
20 3 0.02
22 32 0.19
23 71 0.42
24 54 0.32
25 11 0.06
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.45
Consensus pattern (23 bp):
ATGCTGTTAAATTTGGTATATAA
Found at i:26670488 original size:23 final size:23
Alignment explanation
Indices: 26670437--26670489 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
26670427 CAAATTTTAG
* * *
26670437 TGTATAAATGCTGTTTAATTTGG
1 TGTATAAATGCTGTTCAAATTGA
* *
26670460 TATATAATTGCTGTTCAAATTGA
1 TGTATAAATGCTGTTCAAATTGA
26670483 TGTATAA
1 TGTATAA
26670490 GAGCTGTCCA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.32, C:0.06, G:0.17, T:0.45
Consensus pattern (23 bp):
TGTATAAATGCTGTTCAAATTGA
Found at i:26674600 original size:89 final size:89
Alignment explanation
Indices: 26674445--26675648 Score: 853
Period size: 89 Copynumber: 13.5 Consensus size: 89
26674435 GCTGGTGTTG
* * * *
26674445 TCGATCTGCTTCGCTGCCAGTACA-GAAAGACAAGATCTGCTGTTTTTAGTTTACTCTGCTGTAA
1 TCGATCTGCTTCGCTGCCAGTACAGGAAA-ACAAGATCTGCTATCTTTAGTCTACTCTGCTGCAA
*
26674509 A-CTCAGGGAGGCAAGGCTAGTATCT
65 ACCT-AGGGAGGCAAGGCTAGTGTCT
* * * *
26674534 TTGAT-TGCTTCGCTGCCAATACAGGAAAACAATGATAC-GTTATCTTTAGTCTGCTCTGCTGCA
1 TCGATCTGCTTCGCTGCCAGTACAGGAAAACAA-GAT-CTGCTATCTTTAGTCTACTCTGCTGCA
*
26674597 AACTTAGGGAGGCAAGGCTAGTGTCT
64 AACCTAGGGAGGCAAGGCTAGTGTCT
* ** *
26674623 TCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTACTCTACTGCAAA
1 TCGATCTGCTTCGCTGCCAGTACAGGAAAACAAGATCTGCTATCTTTAGTCTACTCTGCTGCAAA
*
26674688 CCTAGGGAGGCAAGGCTGGTGTCT
66 CCTAGGGAGGCAAGGCTAGTGTCT
* ** *
26674712 TCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCTCTGCTGCAAA
1 TCGATCTGCTTCGCTGCCAGTACAGGAAAACAAGATCTGCTATCTTTAGTCTACTCTGCTGCAAA
* * *
26674777 CCTAGGGAGGCAAGGTTGGTGCCT
66 CCTAGGGAGGCAAGGCTAGTGTCT
* * * ** * * * *
26674801 TTGATCTGCTTCGCTGTCAGTATAGGAAGGCAAGATCTGCTATCTTCAGCCTGCTCCGCTGTC-A
1 TCGATCTGCTTCGCTGCCAGTACAGGAAAACAAGATCTGCTATCTTTAGTCTACTCTGCTG-CAA
* * *
26674865 ACCCAGAGAGGCAAGGCTGGTGTCT
65 ACCTAGGGAGGCAAGGCTAGTGTCT
* *** *** * * * *
26674890 TCGATCTGCTTTGCTATTAGTACAGGAAGGTAATATCTACTATCTTCAGTCTACTCCGCTGCAAA
1 TCGATCTGCTTCGCTGCCAGTACAGGAAAACAAGATCTGCTATCTTTAGTCTACTCTGCTGCAAA
* ** *
26674955 CCCAATGAGGCAAGGCTGGTGTCT
66 CCTAGGGAGGCAAGGCTAGTGTCT
* * * ** * * * *
26674979 TCGATTTGCTTTGCTGTCAGTACAGGAAGGCAAGATTTGCTATCTTCAGTTTACTCCGCTGTCAA
1 TCGATCTGCTTCGCTGCCAGTACAGGAAAACAAGATCTGCTATCTTTAGTCTACTCTGCTG-CAA
* *
26675044 TA-C-AGGAAGGCAAGGCTGGTGTCT
65 -ACCTAGGGAGGCAAGGCTAGTGTCT
* * * * * * * *
26675068 TCGATCTACTTTGCTGTCAGTAC-TGAAAGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTCA
1 TCGATCTGCTTCGCTGCCAGTACAGGAAA-ACAAGATCTGCTATCTTTAGTCTACTCTGCTG-CA
* * * * *
26675132 GTA-C-AAGAAGGCAAGATCTGGTGTCT
64 -AACCTAGGGAGGCAAG-GCTAGTGTCT
* * * * * ** * * * *
26675158 TCAATCTACTTTGCTGTCAGTATAGGAAGGCAAGATATGTTATCTTCAGTCTGCT-TCGCTGTCA
1 TCGATCTGCTTCGCTGCCAGTACAGGAAAACAAGATCTGCTATCTTTAGTCTACTCT-GCTG-CA
* * * *
26675222 GTA-C-AAGAAGGCAAGGCTGGTGTCT
64 -AACCTAGGGAGGCAAGGCTAGTGTCT
* * ** * * *
26675247 TCGATCTGCTTCGTTGTCAGTACAGGAAGTCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTC-A
1 TCGATCTGCTTCGCTGCCAGTACAGGAAAACAAGATCTGCTATCTTTAGTCTACTCTGCTG-CAA
* * * *
26675311 ACCCAAGGAGGCAAGGTTGGTGTCT
65 ACCTAGGGAGGCAAGGCTAGTGTCT
** * ** * * * *
26675336 TCGATCTAG-TTCGCTGTTAGTACTGGAAGGCAAGATCTGCTATCTTTAATTTGCTCCGCTGCAA
1 TCGATCT-GCTTCGCTGCCAGTACAGGAAAACAAGATCTGCTATCTTTAGTCTACTCTGCTGCAA
* *
26675400 ACCCAGGGAGGCAAGGCTGGTGTCT
65 ACCTAGGGAGGCAAGGCTAGTGTCT
* * * * * * * *
26675425 TCGATCTGCTTTGCTGTCAGTATAGGAAGACAATATCTGCTATCTTTAGTCTGCTCCGCTATCAG
1 TCGATCTGCTTCGCTGCCAGTACAGGAAAACAAGATCTGCTATCTTTAGTCTACTCTGCT-GCA-
* * *
26675490 TA--TAGGAAGGCAAGGCTGGTGTCT
64 AACCTAGGGAGGCAAGGCTAGTGTCT
* * *** * *
26675514 TCGATCTACTTCGCTGTCAGTACAGGAAGGGAAGATCTGTTATCTTTAGTCTGCTCTGCTGTCAG
1 TCGATCTGCTTCGCTGCCAGTACAGGAAAACAAGATCTGCTATCTTTAGTCTACTCTGCTG-CA-
* *
26675579 TA-C-AGGAAGGCAAGGCTAGTGTCT
64 AACCTAGGGAGGCAAGGCTAGTGTCT
* * ** ** * *
26675603 TCGATATGCTTCACTATCAGTACAGGAAGGCAAGATTTGCTCTCTT
1 TCGATCTGCTTCGCTGCCAGTACAGGAAAACAAGATCTGCTATCTT
26675649 CAGGCTGGTG
Statistics
Matches: 965, Mismatches: 125, Indels: 50
0.85 0.11 0.04
Matches are distributed among these distances:
87 1 0.00
88 29 0.03
89 821 0.85
90 109 0.11
91 5 0.01
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (89 bp):
TCGATCTGCTTCGCTGCCAGTACAGGAAAACAAGATCTGCTATCTTTAGTCTACTCTGCTGCAAA
CCTAGGGAGGCAAGGCTAGTGTCT
Found at i:26674758 original size:178 final size:177
Alignment explanation
Indices: 26674435--26675651 Score: 1283
Period size: 178 Copynumber: 6.8 Consensus size: 177
26674425 AGGTTACTCC
* * * * * * *
26674435 GCTGGTGT-TGTCGATCTGCTTCGCTGCCAGTACAGAAAGACAAGATCTGCTGTTTTTAGTTTAC
1 GCTGGTGTCT-TCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGC
* * * * * *
26674499 TCTGCTGT-AAACTCAGGGAGGCAAGGCTAGTATCTTTGAT-TGCTTCGCTGCCAATACAGGAAA
65 TCTGCTGTCAAA--CAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAG
* * * * * *
26674562 ACAATGATAC-GTTATCTTTAGTCTGCTCTGCTGCAAACTTAGGGAGGCAAG
128 GCAA-GAT-CTGCTATCTTCAGTCTGCTCCGCTGCAAACCTAAGGAGGCAAG
* *
26674613 GCTAGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTACT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCT
*
26674678 CTACTG-CAAACCTAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGG
66 CTGCTGTCAAA-C-AGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGG
* * *
26674742 CAAGATCTGCTATCTTTAGTCTGCTCTGCTGCAAACCTAGGGAGGCAAG
129 CAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACCTAAGGAGGCAAG
* * * * * *
26674791 GTTGGTGCCTTTGATCTGCTTCGCTGTCAGTATAGGAAGGCAAGATCTGCTATCTTCAGCCTGCT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCT
* * * * * * *
26674856 CCGCTGTCAACCCAGAGAGGCAAGGCTGGTGTCTTCGATCTGCTTTGCTATTAGTACAGGAAGGT
66 CTGCTGTCAA-ACAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGC
* * * * *
26674921 AATATCTACTATCTTCAGTCTACTCCGCTGCAAACCCAATGAGGCAAG
130 AAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACCTAAGGAGGCAAG
* * * * * *
26674969 GCTGGTGTCTTCGATTTGCTTTGCTGTCAGTACAGGAAGGCAAGATTTGCTATCTTCAGTTTACT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCT
* * * * * *
26675034 CCGCTGTCAATACAGGAAGGCAAGGCTGGTGTCTTCGATCTACTTTGCTGTCAGTACTGAAAGGC
66 CTGCTGTCAA-ACAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGC
* *
26675099 AAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAGTA-C-AAGAAGGCAAG
130 AAGATCTGCTATCTTCAGTCTGCTCCGCTG-CA-AACCTAAGGAGGCAAG
* * * * * * * *
26675147 ATCTGGTGTCTTCAATCTACTTTGCTGTCAGTATAGGAAGGCAAGATATGTTATCTTCAGTCTGC
1 -GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGC
* * * *
26675212 T-TCGCTGTCAGTACAAGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGTTGTCAGTACAGGAAG
65 TCT-GCTGTCA-AACAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAG
* *
26675276 TCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTC-AACCCAAGGAGGCAAG
128 GCAAGATCTGCTATCTTCAGTCTGCTCCGCTG-CAAACCTAAGGAGGCAAG
* * * * *
26675326 GTTGGTGTCTTCGATCTAG-TTCGCTGTTAGTACTGGAAGGCAAGATCTGCTATCTTTAATTTGC
1 GCTGGTGTCTTCGATCT-GCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGC
* * *
26675390 TCCGCTG-CAAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTTGCTGTCAGTATAGGAAG
65 TCTGCTGTCAAA--CAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAG
* * * * *
26675454 ACAATATCTGCTATCTTTAGTCTGCTCCGCT---ATCAGTATAGGAAGGCAAG
128 GCAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAAC-CTA-AGG-AGGCAAG
* * *
26675504 GCTGGTGTCTTCGATCTACTTCGCTGTCAGTACAGGAAGGGAAGATCTGTTATCTTTAGTCTGCT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCT
* * * * * *
26675569 CTGCTGTCAGTACAGGAAGGCAAGGCTAGTGTCTTCGATATGCTTCACTATCAGTACAGGAAGGC
66 CTGCTGTCA-AACAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGC
* *
26675634 AAGATTTGCTCTCTTCAG
130 AAGATCTGCTATCTTCAG
26675652 GCTGGTGTCT
Statistics
Matches: 879, Mismatches: 136, Indels: 48
0.83 0.13 0.05
Matches are distributed among these distances:
175 2 0.00
176 2 0.00
177 8 0.01
178 680 0.77
179 185 0.21
180 2 0.00
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (177 bp):
GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCT
CTGCTGTCAAACAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCA
AGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACCTAAGGAGGCAAG
Found at i:26674789 original size:45 final size:44
Alignment explanation
Indices: 26674574--26674791 Score: 148
Period size: 44 Copynumber: 4.9 Consensus size: 44
26674564 AATGATACGT
*
26674574 TATCTTTAGTCTGCTCTGCTGCAAACTTAGGGAGGCAAGGCTAG-
1 TATCTTTAGTCTGCTCTGCTGCAAACCTAGGGAGGCAAGGCT-GC
* * * * *
26674618 TGTC-TTCGATCTGCT-TCGCTGTCAGTA-C-AGGAAGGCAAGATCTGC
1 TATCTTTAG-TCTGCTCT-GCTG-CA-AACCTAGGGAGGCAAG-GCTGC
* * *
26674663 TATCTTTAGTCTACTCTACTGCAAACCTAGGGAGGCAAGGCTGG
1 TATCTTTAGTCTGCTCTGCTGCAAACCTAGGGAGGCAAGGCTGC
* * * * *
26674707 TGTC-TTCGATCTGCT-TCGCTGTCAGTA-C-AGGAAGGCAAGATCTGC
1 TATCTTTAG-TCTGCTCT-GCTG-CA-AACCTAGGGAGGCAAG-GCTGC
26674752 TATCTTTAGTCTGCTCTGCTGCAAACCTAGGGAGGCAAGG
1 TATCTTTAGTCTGCTCTGCTGCAAACCTAGGGAGGCAAGG
26674792 TTGGTGCCTT
Statistics
Matches: 128, Mismatches: 27, Indels: 38
0.66 0.14 0.20
Matches are distributed among these distances:
43 10 0.08
44 54 0.42
45 54 0.42
46 10 0.08
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (44 bp):
TATCTTTAGTCTGCTCTGCTGCAAACCTAGGGAGGCAAGGCTGC
Found at i:26674914 original size:267 final size:266
Alignment explanation
Indices: 26674435--26675651 Score: 1296
Period size: 267 Copynumber: 4.6 Consensus size: 266
26674425 AGGTTACTCC
* * * * * * *
26674435 GCTGGTGT-TGTCGATCTGCTTCGCTGCCAGTACAGAAAGACAAGATCTGCTGTTTTTAGTTTAC
1 GCTGGTGTCT-TCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGC
* * * * * * *
26674499 TCTGCTGT-AAACTCAGGGAGGCAAGGCTAGTATCTTTGAT-TGCTTCGCTGCCAATACAGGAAA
65 TCTGCTGTCAAA--CAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTATAGGAAG
* * * * ** * *
26674562 ACAATGATAC-GTTATCTTTAGTCTGCTCTGCTGCAAACTTAGGGAGGCAAGGCTAGTGTCTTCG
128 GCAA-GAT-CTGCTATCTTCAGTCTGCTCCGCTGCAAACCCAGAGAGGCAAGGCTGGTGTCTTCG
* * **
26674626 ATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTACTCTACTGCA-AACC
191 ATCTGCTTTGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTACTCCGCTGCAGAA-C
* *
26674690 TAGGGAGGCAAG
255 TAAGAAGGCAAG
26674702 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCT
* * *
26674767 CTGCTG-CAAACCTAGGGAGGCAAGGTTGGTGCCTTTGATCTGCTTCGCTGTCAGTATAGGAAGG
66 CTGCTGTCAAA-C-AGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTATAGGAAGG
*
26674831 CAAGATCTGCTATCTTCAGCCTGCTCCGCTGTC-AACCCAGAGAGGCAAGGCTGGTGTCTTCGAT
129 CAAGATCTGCTATCTTCAGTCTGCTCCGCTG-CAAACCCAGAGAGGCAAGGCTGGTGTCTTCGAT
* * * * * *
26674895 CTGCTTTGCTATTAGTACAGGAAGGTAATATCTACTATCTTCAGTCTACTCCGCTGCA-AACCCA
193 CTGCTTTGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTACTCCGCTGCAGAA-CTA
26674959 ATG-AGGCAAG
257 A-GAAGGCAAG
* * * * * *
26674969 GCTGGTGTCTTCGATTTGCTTTGCTGTCAGTACAGGAAGGCAAGATTTGCTATCTTCAGTTTACT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCT
* * * * *
26675034 CCGCTGTCAATACAGGAAGGCAAGGCTGGTGTCTTCGATCTACTTTGCTGTCAGTACT-GAAAGG
66 CTGCTGTCAA-ACAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTA-TAGGAAGG
* * * *
26675098 CAAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAGTA-CAAGA-AGGCAAGATCTGGTGTCTTCA
129 CAAGATCTGCTATCTTCAGTCTGCTCCGCTG-CA-AACCCAGAGAGGCAAG-GCTGGTGTCTTCG
* * * * * * *
26675161 ATCTACTTTGCTGTCAGTATAGGAAGGCAAGATATGTTATCTTCAGTCTGCTTCGCTGTCAGTAC
191 ATCTGCTTTGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTACTCCGCTG-CAGAAC
26675226 -AAGAAGGCAAG
255 TAAGAAGGCAAG
* * *
26675237 GCTGGTGTCTTCGATCTGCTTCGTTGTCAGTACAGGAAGTCAAGATCTGCTATCTTCAGTCTGCT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCT
* * * * *
26675302 CCGCTGTCAACCCAAGGAGGCAAGGTTGGTGTCTTCGATCTAG-TTCGCTGTTAGTACT-GGAAG
66 CTGCTGTCAA-ACAGGGAGGCAAGGCTGGTGTCTTCGATCT-GCTTCGCTGTCAGTA-TAGGAAG
* * * *
26675365 GCAAGATCTGCTATCTTTAATTTGCTCCGCTGCAAACCCAGGGAGGCAAGGCTGGTGTCTTCGAT
128 GCAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACCCAGAGAGGCAAGGCTGGTGTCTTCGAT
* * * * * * *
26675430 CTGCTTTGCTGTCAGTATAGGAAGACAATATCTGCTATCTTTAGTCTGCTCCGCTATCAGTA-TA
193 CTGCTTTGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTACTCCGCT-GCAGAACTA
*
26675494 GGAAGGCAAG
257 AGAAGGCAAG
* * *
26675504 GCTGGTGTCTTCGATCTACTTCGCTGTCAGTACAGGAAGGGAAGATCTGTTATCTTTAGTCTGCT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCT
* * * * * * *
26675569 CTGCTGTCAGTACAGGAAGGCAAGGCTAGTGTCTTCGATATGCTTCACTATCAGTACAGGAAGGC
66 CTGCTGTCA-AACAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTATAGGAAGGC
* *
26675634 AAGATTTGCTCTCTTCAG
130 AAGATCTGCTATCTTCAG
26675652 GCTGGTGTCT
Statistics
Matches: 804, Mismatches: 122, Indels: 48
0.83 0.13 0.05
Matches are distributed among these distances:
266 4 0.00
267 546 0.68
268 248 0.31
269 5 0.01
270 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (266 bp):
GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCT
CTGCTGTCAAACAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTATAGGAAGGCA
AGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACCCAGAGAGGCAAGGCTGGTGTCTTCGATCTG
CTTTGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTACTCCGCTGCAGAACTAAGAA
GGCAAG
Found at i:26675042 original size:45 final size:45
Alignment explanation
Indices: 26674627--26675651 Score: 592
Period size: 45 Copynumber: 23.0 Consensus size: 45
26674617 GTGTCTTCGA
*
26674627 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAG
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* * * * * * *
26674672 TCTAC-TCTACTG-CA-AACCTAGGGAGGCAAG-GCTGGTGTCTTC-G
1 TCTGCTTC-GCTGTCAGTA-C-AGGAAGGCAAGATCTGCTATCTTCAG
*
26674715 ATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAG
1 -TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* * * * ** *
26674761 TCTGC-TCTGCTG-CA-AACCTAGGGAGGCAAGGT-TGGTGCCTT-TG
1 TCTGCTTC-GCTGTCAGTA-C-AGGAAGGCAAGATCTGCTATCTTCAG
*
26674804 ATCTGCTTCGCTGTCAGTATAGGAAGGCAAGATCTGCTATCTTCAG
1 -TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* * *** * * *
26674850 CCTGCTCCGCTGTCAACCCA-GAGAGGCAAG-GCTGGTGTCTTC-G
1 TCTGCTTCGCTGTCAGTACAGGA-AGGCAAGATCTGCTATCTTCAG
* * * * * *
26674893 ATCTGCTTTGCTATTAGTACAGGAAGGTAATATCTACTATCTTCAG
1 -TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* * * * * * *
26674939 TCTACTCCGCTG-CA-AACCCAATG-AGGCAAG-GCTGGTGTCTTC-G
1 TCTGCTTCGCTGTCAGTA--C-AGGAAGGCAAGATCTGCTATCTTCAG
* * *
26674982 ATTTGCTTTGCTGTCAGTACAGGAAGGCAAGATTTGCTATCTTCAG
1 -TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* * * * * * *
26675028 TTTACTCCGCTGTCAATACAGGAAGGCAAG-GCTGGTGTCTTC-G
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* * * *
26675071 ATCTACTTTGCTGTCAGTACTGAAAGGCAAGATCTGCTATCTTCAG
1 -TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* * * * *
26675117 TCTGCTCCGCTGTCAGTACAAGAAGGCAAGATCTGGTGTCTTCAA
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* * * * *
26675162 TCTACTTTGCTGTCAGTATAGGAAGGCAAGATATGTTATCTTCAG
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* * * *
26675207 TCTGCTTCGCTGTCAGTACAAGAAGGCAAG-GCTGGTGTCTTC-G
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* *
26675250 ATCTGCTTCGTTGTCAGTACAGGAAGTCAAGATCTGCTATCTTCAG
1 -TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* *** * * *
26675296 TCTGCTCCGCTGTCAACCCAAGG-AGGCAAGGT-TGGTGTCTTC-G
1 TCTGCTTCGCTGTCAGTAC-AGGAAGGCAAGATCTGCTATCTTCAG
* * * *
26675339 ATCTAG-TTCGCTGTTAGTACTGGAAGGCAAGATCTGCTATCTTTAA
1 -TCT-GCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* * * * * * *
26675385 TTTGCTCCGCTG-CA-AACCCAGGGAGGCAAG-GCTGGTGTCTTC-G
1 TCTGCTTCGCTGTCAGTA--CAGGAAGGCAAGATCTGCTATCTTCAG
* * * * *
26675428 ATCTGCTTTGCTGTCAGTATAGGAAGACAATATCTGCTATCTTTAG
1 -TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* * * * * *
26675474 TCTGCTCCGCTATCAGTATAGGAAGGCAAG-GCTGGTGTCTTC-G
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* * * *
26675517 ATCTACTTCGCTGTCAGTACAGGAAGGGAAGATCTGTTATCTTTAG
1 -TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* *
26675563 TCTGC-TCTGCTGTCAGTACAGGAAGGCAAG-GCTAG-TGTCTTC-G
1 TCTGCTTC-GCTGTCAGTACAGGAAGGCAAGATCT-GCTATCTTCAG
* * * * *
26675606 ATATGCTTCACTATCAGTACAGGAAGGCAAGATTTGCTCTCTTCAG
1 -TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
26675652 GCTGGTGTCT
Statistics
Matches: 720, Mismatches: 198, Indels: 123
0.69 0.19 0.12
Matches are distributed among these distances:
43 17 0.02
44 303 0.42
45 382 0.53
46 18 0.03
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.30
Consensus pattern (45 bp):
TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
Found at i:26679162 original size:3 final size:3
Alignment explanation
Indices: 26679147--26679217 Score: 88
Period size: 3 Copynumber: 23.7 Consensus size: 3
26679137 AGGTAAATTG
* * * * * *
26679147 ATA ATA ATT ATA ATA ATA CTA ATA ATA AAA ATA ATA GTA GTA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
26679195 ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA AT
26679218 GATGATGATG
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:26679222 original size:3 final size:3
Alignment explanation
Indices: 26679216--26679247 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
26679206 AATAATAATA
26679216 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
26679248 AGTAATAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:26680323 original size:15 final size:15
Alignment explanation
Indices: 26680303--26680337 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
26680293 GGCCGTATGA
*
26680303 TAGTTGGGCTAGTTG
1 TAGTTGGGCTAGGTG
*
26680318 TAGTTGGTCTAGGTG
1 TAGTTGGGCTAGGTG
26680333 TAGTT
1 TAGTT
26680338 TGGGTTTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.14, C:0.06, G:0.37, T:0.43
Consensus pattern (15 bp):
TAGTTGGGCTAGGTG
Found at i:26683485 original size:97 final size:99
Alignment explanation
Indices: 26683373--26683555 Score: 282
Period size: 97 Copynumber: 1.9 Consensus size: 99
26683363 TCACATATCG
* *
26683373 GTGCTGATGCCATGTCCTAGACATGGTCTTACACTGGCACTCATC-TC-GAG-CTGATGTCATGT
1 GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATCGTCTGAGTC-GATGCCATGT
26683435 CCCAAACATGGTCTTACACTGTCCCTTCTCTGTCC
65 CCCAAACATGGTCTTACACTGTCCCTTCTCTGTCC
* *
26683470 GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCCTCGGTCTGTGTCGATGCCATGT
1 GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATC-GTCTGAGTCGATGCCATGT
*
26683535 CCCAGACATGGTCTTACACTG
65 CCCAAACATGGTCTTACACTG
26683556 GCACACTTAT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
97 43 0.56
99 2 0.03
100 31 0.40
101 1 0.01
ACGTcount: A:0.18, C:0.31, G:0.22, T:0.30
Consensus pattern (99 bp):
GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATCGTCTGAGTCGATGCCATGTC
CCAAACATGGTCTTACACTGTCCCTTCTCTGTCC
Found at i:26683488 original size:50 final size:49
Alignment explanation
Indices: 26683373--26683559 Score: 238
Period size: 50 Copynumber: 3.8 Consensus size: 49
26683363 TCACATATCG
*
26683373 GTGCTGATGCCATGTCCTAGACATGGTCTTACACTGGCAC-TCATC-T-C
1 GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTTC-TCGTCC
* * * * *
26683420 GAGCTGATGTCATGTCCCAAACATGGTCTTACACTGTCCCTTCTCTGTCC
1 GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTTCTC-GTCC
* *
26683470 GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCCTCGGTCT
1 GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTTCTC-GTCC
26683520 GTG-TCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
1 GTGCT-GATGCCATGTCCCAGACATGGTCTTACACTGGCAC
26683560 ACTTATTGCC
Statistics
Matches: 121, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
47 36 0.30
48 2 0.02
49 2 0.02
50 81 0.67
ACGTcount: A:0.18, C:0.31, G:0.22, T:0.29
Consensus pattern (49 bp):
GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTTCTCGTCC
Found at i:26683628 original size:44 final size:44
Alignment explanation
Indices: 26683580--26683672 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 44
26683570 ATGGTCCAAC
* *
26683580 CATGGTCTTTTCCGTCAATTCTTTCTTAATTGCCATGTTATAAA
1 CATGGGCTTTTCCGTCAATTCTTACTTAATTGCCATGTTATAAA
** *
26683624 CATGGGCTTTTCTTTCAATTCTTACTTAATTTCCATGTTATAAA
1 CATGGGCTTTTCCGTCAATTCTTACTTAATTGCCATGTTATAAA
*
26683668 GATGG
1 CATGG
26683673 ACCTTGAGAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.24, C:0.18, G:0.13, T:0.45
Consensus pattern (44 bp):
CATGGGCTTTTCCGTCAATTCTTACTTAATTGCCATGTTATAAA
Found at i:26685056 original size:14 final size:14
Alignment explanation
Indices: 26685037--26685063 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26685027 TAAAGTTACA
26685037 TTTAATAATTCATT
1 TTTAATAATTCATT
26685051 TTTAATAATTCAT
1 TTTAATAATTCAT
26685064 AAATAAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:26695438 original size:19 final size:19
Alignment explanation
Indices: 26695416--26695453 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
26695406 TCAATCATCC
26695416 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
26695435 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
26695454 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:26696932 original size:33 final size:33
Alignment explanation
Indices: 26696895--26696960 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
26696885 GGCGATCAAA
26696895 GAGTATAGAAGAAAACAAATCGAAAAAGATATT
1 GAGTATAGAAGAAAACAAATCGAAAAAGATATT
* * *
26696928 GAGTATTGAAGTAAACAACTCGAAAAAGATATT
1 GAGTATAGAAGAAAACAAATCGAAAAAGATATT
26696961 AACATAATTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.53, C:0.08, G:0.18, T:0.21
Consensus pattern (33 bp):
GAGTATAGAAGAAAACAAATCGAAAAAGATATT
Found at i:26701048 original size:99 final size:100
Alignment explanation
Indices: 26700866--26701062 Score: 324
Period size: 99 Copynumber: 2.0 Consensus size: 100
26700856 CAAAATTTTA
* *
26700866 GAAAAATTGCTCTTGCCGCCTTAGGGTTCCCAAACCCTAGATATTTAATCCAATTTTCCCAATAG
1 GAAAAATTGCTCTTGCCGCCCTAGGATTCCCAAACCCTAGATATTTAATCCAATTTTCCCAATAG
26700931 AAATAGGATTTTGCTTCCTCTCCAAAACCAAATTC
66 AAATAGGATTTTGCTTCCTCTCCAAAACCAAATTC
* * * *
26700966 GAAAAATTTCTCTTGCCGCCCTAGTATTCTCAAACCCTAGAT-TTTAATCCAATTTTTCCAATAG
1 GAAAAATTGCTCTTGCCGCCCTAGGATTCCCAAACCCTAGATATTTAATCCAATTTTCCCAATAG
*
26701030 AAATAGGATTTTGTTTCCTCTCCAAAACCAAAT
66 AAATAGGATTTTGCTTCCTCTCCAAAACCAAAT
26701063 AAAATTTCTT
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
99 53 0.59
100 37 0.41
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (100 bp):
GAAAAATTGCTCTTGCCGCCCTAGGATTCCCAAACCCTAGATATTTAATCCAATTTTCCCAATAG
AAATAGGATTTTGCTTCCTCTCCAAAACCAAATTC
Found at i:26704671 original size:39 final size:40
Alignment explanation
Indices: 26704584--26704671 Score: 108
Period size: 39 Copynumber: 2.2 Consensus size: 40
26704574 TATTCACTTT
* * *
26704584 CAAGCATATATCATATTACATATTATAGTCACTTAACATA
1 CAAGCATATATCATAGTACATATTATAATCACATAACATA
*
26704624 CAAGCATATATCATAGTAC-TCA-TATAATCACATAACATT
1 CAAGCATATATCATAGTACAT-ATTATAATCACATAACATA
*
26704663 TAAGCATAT
1 CAAGCATAT
26704672 GTCACAATAC
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
39 23 0.55
40 19 0.45
ACGTcount: A:0.43, C:0.18, G:0.06, T:0.33
Consensus pattern (40 bp):
CAAGCATATATCATAGTACATATTATAATCACATAACATA
Found at i:26704741 original size:15 final size:16
Alignment explanation
Indices: 26704717--26704754 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
26704707 GCATAATAGT
*
26704717 CACATGTCACA-TAAA
1 CACATATCACATTAAA
*
26704732 CACATATCACATTACA
1 CACATATCACATTAAA
26704748 CACATAT
1 CACATAT
26704755 TCATAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.45, C:0.29, G:0.03, T:0.24
Consensus pattern (16 bp):
CACATATCACATTAAA
Found at i:26706943 original size:21 final size:21
Alignment explanation
Indices: 26706902--26706943 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26706892 ATTTCAAAAC
*
26706902 ATTTTATGATTTTTATTTAAT
1 ATTTTATGATTTTTATATAAT
26706923 ATTTTATGATTTTCTA-ATAAT
1 ATTTTATGATTTT-TATATAAT
26706944 CGTGTTTAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (21 bp):
ATTTTATGATTTTTATATAAT
Found at i:26711807 original size:50 final size:50
Alignment explanation
Indices: 26711748--26711924 Score: 153
Period size: 50 Copynumber: 3.4 Consensus size: 50
26711738 TATCCCAGAT
** *
26711748 ATGGTCTTACATGGGAGTTCTCATATAGGTG-C-ACGTGCCATGTCTCAAAC
1 ATGGTCTTACATGGGACCTCTCATATAGGTGCCAAC--GCCATGTCCCAAAC
* * *
26711798 ATGGTCTTACGA-GGGACCTCTCATCTGGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTAC-ATGGGACCTCTCATATAGGTGCCAACGCCATGTCCCAAAC
* * * *
26711848 ATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGTCATATCCCAAAC
1 ATGGTCTTACATGGGACCTCTCAT-A--T--A-GGTGCCAACGCCATGTCCCAAAC
*
26711904 ATGGTCTTACATGGGATCTCT
1 ATGGTCTTACATGGGACCTCT
26711925 TTACTCAAAT
Statistics
Matches: 103, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
49 1 0.01
50 59 0.57
51 2 0.02
52 2 0.02
53 1 0.01
56 38 0.37
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.28
Consensus pattern (50 bp):
ATGGTCTTACATGGGACCTCTCATATAGGTGCCAACGCCATGTCCCAAAC
Found at i:26713355 original size:23 final size:23
Alignment explanation
Indices: 26713329--26713373 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
26713319 CCGATCTCCA
26713329 AATAATCATCACAACCAAAACAG
1 AATAATCATCACAACCAAAACAG
26713352 AATAATCATCACAACCAAAACA
1 AATAATCATCACAACCAAAACA
26713374 CACACATCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.58, C:0.27, G:0.02, T:0.13
Consensus pattern (23 bp):
AATAATCATCACAACCAAAACAG
Found at i:26715067 original size:4 final size:4
Alignment explanation
Indices: 26715058--26715086 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
26715048 ATAAAAATAA
26715058 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
26715087 CTAAAACTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:26717771 original size:4 final size:4
Alignment explanation
Indices: 26717747--26717831 Score: 61
Period size: 4 Copynumber: 20.5 Consensus size: 4
26717737 AGTTACCCCT
*
26717747 TTTA TTTTA TTTTA TTTTA TTTA -TTA TTTT TTTA TATTA TTTA -TT-
1 TTTA -TTTA -TTTA -TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA
*
26717792 TTTA TTT- TCCTA TTTTA TTTA TTTTA TTTA TTTA TTTA TT
1 TTTA TTTA T-TTA -TTTA TTTA -TTTA TTTA TTTA TTTA TT
26717832 ATTCTTCTAT
Statistics
Matches: 68, Mismatches: 4, Indels: 17
0.76 0.04 0.19
Matches are distributed among these distances:
3 8 0.12
4 35 0.51
5 24 0.35
6 1 0.01
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:26717775 original size:17 final size:19
Alignment explanation
Indices: 26717747--26717831 Score: 84
Period size: 20 Copynumber: 4.3 Consensus size: 19
26717737 AGTTACCCCT
*
26717747 TTTATTTTATTTTATTTTA
1 TTTATTTTATTTTATATTA
*
26717766 TTTATTATTTTTTTATATTA
1 TTTATT-TTATTTTATATTA
*
26717786 TTTATTTTTATTTTCCTATTTTA
1 TTTA-TTTTA-TTT--TATATTA
26717809 TTTATTTTA-TTTAT-TTA
1 TTTATTTTATTTTATATTA
26717826 TTTATT
1 TTTATT
26717832 ATTCTTCTAT
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
17 9 0.16
18 3 0.05
19 6 0.11
20 19 0.33
21 5 0.09
22 5 0.09
23 10 0.18
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTATTTTATTTTATATTA
Found at i:26717784 original size:13 final size:13
Alignment explanation
Indices: 26717751--26717828 Score: 58
Period size: 13 Copynumber: 6.0 Consensus size: 13
26717741 ACCCCTTTTA
*
26717751 TTTTATTTTATTT
1 TTTTATATTATTT
*
26717764 TATT-TATTATTT
1 TTTTATATTATTT
26717776 TTTTATATTATTT
1 TTTTATATTATTT
26717789 ATTTT-TATT-TTCCT
1 -TTTTATATTATT--T
26717803 ATTTTAT-TTATTT
1 -TTTTATATTATTT
26717816 TATTTAT-TTATTT
1 T-TTTATATTATTT
26717829 ATTATTCTTC
Statistics
Matches: 55, Mismatches: 3, Indels: 14
0.76 0.04 0.19
Matches are distributed among these distances:
12 13 0.24
13 27 0.49
14 12 0.22
15 3 0.05
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTATATTATTT
Found at i:26717796 original size:45 final size:49
Alignment explanation
Indices: 26717746--26717867 Score: 119
Period size: 49 Copynumber: 2.5 Consensus size: 49
26717736 AAGTTACCCC
*
26717746 TTTTATTTTATTTTATTTTA-TTTA-TTATTTTTTTA-TATTATT-TAT
1 TTTTATTTTATTTTATTTTATTTTATTTATTTATTTATTATTATTCTAT
*
26717791 TTTTATTTTCCTATTTTA-TTTATTTTATTTATTTATTTATTATTCTTCTAT
1 TTTTA-TTT--TATTTTATTTTATTTTATTTATTTATTTATTATTATTCTAT
** *
26717842 TTAGATTTTAAATTTATTTTAATTTT
1 TTTTATTTT-ATTTTATTTT-ATTTT
26717868 TCTGTTATTT
Statistics
Matches: 62, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
45 5 0.08
46 3 0.05
47 4 0.06
48 12 0.19
49 15 0.24
50 12 0.19
51 11 0.18
ACGTcount: A:0.23, C:0.03, G:0.01, T:0.73
Consensus pattern (49 bp):
TTTTATTTTATTTTATTTTATTTTATTTATTTATTTATTATTATTCTAT
Found at i:26717834 original size:43 final size:45
Alignment explanation
Indices: 26717759--26717843 Score: 115
Period size: 43 Copynumber: 1.9 Consensus size: 45
26717749 TATTTTATTT
*
26717759 TATTTTATTTATTATTTTTTTATATTATTTATT-TT-TATTTTCC
1 TATTTTATTTATTATTTATTTATATTATTTATTCTTCTATTTTCC
26717802 TATTTTATTTATTTTATTTATTTAT-TTA-TTATTCTTCTATTT
1 TATTTTATTTA--TTATTTATTTATATTATTTATTCTTCTATTT
26717844 AGATTTTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
43 16 0.43
44 5 0.14
45 16 0.43
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (45 bp):
TATTTTATTTATTATTTATTTATATTATTTATTCTTCTATTTTCC
Found at i:26717972 original size:21 final size:21
Alignment explanation
Indices: 26717948--26718024 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 21
26717938 ATTGAGTTTA
26717948 TTATTTTTTTATTTTTTTGTT
1 TTATTTTTTTATTTTTTTGTT
26717969 TTA-TTTTTTATTATTTTCT-TT
1 TTATTTTTTTATT-TTTT-TGTT
* * ** *
26717990 TTAATTTTGT-TTTAGTTGCT
1 TTATTTTTTTATTTTTTTGTT
26718010 TTATTTTTTTATTTT
1 TTATTTTTTTATTTT
26718025 CTTAAACTTG
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
19 1 0.02
20 20 0.45
21 17 0.39
22 6 0.14
ACGTcount: A:0.13, C:0.03, G:0.05, T:0.79
Consensus pattern (21 bp):
TTATTTTTTTATTTTTTTGTT
Found at i:26717980 original size:31 final size:31
Alignment explanation
Indices: 26717944--26718024 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 31
26717934 TATCATTGAG
*
26717944 TTTATTATTTTTTTATTTTTTTGTTTTATTT
1 TTTATTATTTTTTTATTTTTTTGTTTTAGTT
*
26717975 TTTATTATTTTCTTT-TTAATTTTGTTTTAGTT
1 TTTATTATTTT-TTTATT-TTTTTGTTTTAGTT
**
26718007 GCT-TTATTTTTTTATTTT
1 TTTATTATTTTTTTATTTT
26718025 CTTAAACTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
30 4 0.10
31 22 0.52
32 16 0.38
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (31 bp):
TTTATTATTTTTTTATTTTTTTGTTTTAGTT
Found at i:26718013 original size:34 final size:30
Alignment explanation
Indices: 26717944--26718024 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 30
26717934 TATCATTGAG
* *
26717944 TTTATTATTTTTTTATTTTTTTGTTTTATTT
1 TTTATTATTTTTTT-TTATTTTGTTTTATTC
26717975 TTTATTATTTTCTTTTTAATTTTGTTTTAGTTGC
1 TTTATTATTTT-TTTTT-ATTTTGTTTTA-TT-C
26718009 TTTATT-TTTTTATTTT
1 TTTATTATTTTT-TTTT
26718025 CTTAAACTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
31 13 0.30
32 14 0.33
33 10 0.23
34 6 0.14
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (30 bp):
TTTATTATTTTTTTTTATTTTGTTTTATTC
Found at i:26718129 original size:79 final size:80
Alignment explanation
Indices: 26718041--26718232 Score: 368
Period size: 80 Copynumber: 2.4 Consensus size: 80
26718031 CTTGTTTTAA
26718041 TTATTATTTTGAAATATATTTTTATGGTTGTTTCTAATCGAGTTATAA-CACTTAATCTTCACTA
1 TTATTATTTTGAAATATATTTTTATGGTTGTTTCTAATCGAGTTATAACCACTTAATCTTCACTA
26718105 TTTGTGTTTATTTTC
66 TTTGTGTTTATTTTC
26718120 TTATTATTTTGAAATATATTTTTATGGTTGTTTCTAATCGAGTTATAACCACTTAATCTTCACTA
1 TTATTATTTTGAAATATATTTTTATGGTTGTTTCTAATCGAGTTATAACCACTTAATCTTCACTA
26718185 TTTGTGTTTATTTTC
66 TTTGTGTTTATTTTC
*
26718200 TTATTATTTTGAAATAAATTTTTATGGTTGTTT
1 TTATTATTTTGAAATATATTTTTATGGTTGTTT
26718233 ATAACCACTT
Statistics
Matches: 111, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
79 48 0.43
80 63 0.57
ACGTcount: A:0.26, C:0.09, G:0.10, T:0.55
Consensus pattern (80 bp):
TTATTATTTTGAAATATATTTTTATGGTTGTTTCTAATCGAGTTATAACCACTTAATCTTCACTA
TTTGTGTTTATTTTC
Found at i:26719502 original size:23 final size:23
Alignment explanation
Indices: 26719449--26719502 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
26719439 AAATACCAAT
* * *
26719449 TAGAAGAAGACCTAAGGAGGCAC
1 TAGAAGAAGACCGAAGAAAGCAC
*
26719472 TCAG-AGAAGATCGAAGAAAGCAC
1 T-AGAAGAAGACCGAAGAAAGCAC
26719495 TAGAAGAA
1 TAGAAGAA
26719503 CGTCGTCGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 2 0.08
23 21 0.84
24 2 0.08
ACGTcount: A:0.48, C:0.15, G:0.28, T:0.09
Consensus pattern (23 bp):
TAGAAGAAGACCGAAGAAAGCAC
Found at i:26724260 original size:22 final size:23
Alignment explanation
Indices: 26724217--26724262 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
26724207 CTCTCCCTCC
26724217 CACGTTCTCTCCTTCTTCCTTGTT
1 CACGTTCTCT-CTTCTTCCTTGTT
26724241 CACGTTCTCT-TTCCTT-CTTGTT
1 CACGTTCTCTCTT-CTTCCTTGTT
26724263 TCTTTCTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 8 0.38
23 3 0.14
24 10 0.48
ACGTcount: A:0.04, C:0.35, G:0.09, T:0.52
Consensus pattern (23 bp):
CACGTTCTCTCTTCTTCCTTGTT
Found at i:26725033 original size:21 final size:21
Alignment explanation
Indices: 26725009--26725048 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26724999 AGCGTGTGTG
26725009 GCCTCCACACGGGTGTGTATA
1 GCCTCCACACGGGTGTGTATA
* *
26725030 GCCTCTACATGGGTGTGTA
1 GCCTCCACACGGGTGTGTA
26725049 GACCCCCACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.25, G:0.30, T:0.28
Consensus pattern (21 bp):
GCCTCCACACGGGTGTGTATA
Found at i:26728149 original size:6 final size:6
Alignment explanation
Indices: 26728138--26728162 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
26728128 AGAGAAAGAT
26728138 GGAAGG GGAAGG GGAAGG GGAAGG G
1 GGAAGG GGAAGG GGAAGG GGAAGG G
26728163 CTTGGGAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.68, T:0.00
Consensus pattern (6 bp):
GGAAGG
Found at i:26734281 original size:126 final size:125
Alignment explanation
Indices: 26734056--26734409 Score: 557
Period size: 126 Copynumber: 2.8 Consensus size: 125
26734046 TAATTTCGAG
* * *
26734056 TTGACGTTTCTGATCAAATAGTATAAAATCGCTTCTAGCAGGATGCTACTTGGGAAGAATTTTTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTA-TTGAGAAGAATTTGTG
* * * *
26734121 AAATCGCACCCTCGTGGATGCACTTTTGCTACAGTAGGTCAC-GAAAGAAATAATTGTTTTT
65 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACAG-AAGAAATAATTATTTTT
* *
26734182 TTGACGTTTCTGAGCAAAAAGTATAAAATCGCTTCTAGCAGGATGCTATGTGAGAAGAAATTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTAT-TGAGAAGAATTTGTG
26734247 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACAGAAGAAATAATTATTTTT
65 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACAGAAGAAATAATTATTTTT
26734308 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTA-TTGAGAAGAATTTGTG
* * *
26734373 AAATCGAGCCCTCGTAGACGAGCTTTTGCTACAGTAG
65 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
26734410 CATGTTTAGG
Statistics
Matches: 211, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
125 1 0.00
126 208 0.99
127 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (125 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTGAGAAGAATTTGTGA
AATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACAGAAGAAATAATTATTTTT
Found at i:26737620 original size:116 final size:116
Alignment explanation
Indices: 26737408--26737647 Score: 435
Period size: 116 Copynumber: 2.1 Consensus size: 116
26737398 TGATAAATTG
26737408 TATTAACTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
1 TATTAACTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
* *
26737473 TAGTACCAGTCAAAACATTTTTCCAAGTCTAACATTATGTGAATGTAAAAT
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
*
26737524 TATTAACTCTAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
1 TATTAACTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
* *
26737589 TAGTAGCAGTCAAAACATTTTTCTAAATCTAACATTACGTGAATGTAAAAT
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
26737640 TATTAACT
1 TATTAACT
26737648 TTGTTTAGGG
Statistics
Matches: 119, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
116 119 1.00
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (116 bp):
TATTAACTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
Found at i:26737706 original size:22 final size:22
Alignment explanation
Indices: 26737673--26737730 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
26737663 AATTAAATTA
*
26737673 GGTTAGGATTTTAAAGTTAA-G
1 GGTTAGGTTTTTAAAGTTAAGG
26737694 GGTTAGAGTTTTT-AAGTTAAGG
1 GGTTAG-GTTTTTAAAGTTAAGG
26737716 GGTTATGGTTTTTAA
1 GGTTA-GGTTTTTAA
26737731 TTAAATTAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 13 0.41
22 17 0.53
23 2 0.06
ACGTcount: A:0.28, C:0.00, G:0.29, T:0.43
Consensus pattern (22 bp):
GGTTAGGTTTTTAAAGTTAAGG
Done.