Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 92 of 218
Found at i:26737734 original size:21 final size:21
Alignment explanation
Indices: 26737673--26737734 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
26737663 AATTAAATTA
*
26737673 GGTTAG-GATTTTAAAGTTAAG
1 GGTTAGAG-TTTTTAAGTTAAG
26737694 GGTTAGAGTTTTTAAGTTAAGG
1 GGTTAGAGTTTTTAAGTTAA-G
26737716 GGTTATG-GTTTTTAA-TTAA
1 GGTTA-GAGTTTTTAAGTTAA
26737735 ATTAGGTTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
21 21 0.57
22 15 0.41
23 1 0.03
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (21 bp):
GGTTAGAGTTTTTAAGTTAAG
Found at i:26737761 original size:35 final size:35
Alignment explanation
Indices: 26737715--26737789 Score: 141
Period size: 35 Copynumber: 2.1 Consensus size: 35
26737705 TTAAGTTAAG
*
26737715 GGGTTATGGTTTTTAATTAAATTAGGTTAGGGTTA
1 GGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTA
26737750 GGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTA
1 GGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTA
26737785 GGGTT
1 GGGTT
26737790 TTTAATTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (35 bp):
GGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTA
Found at i:26737778 original size:23 final size:23
Alignment explanation
Indices: 26737751--26738523 Score: 360
Period size: 23 Copynumber: 31.6 Consensus size: 23
26737741 TTAGGGTTAG
26737751 GGTTAGGGTTTTTAATTAAATTAGGTTA
1 GGTTAGGGTTTTTAATT-AA--A--TTA
26737779 GGGTTAGGGTTTTTAATTAAATTA
1 -GGTTAGGGTTTTTAATTAAATTA
*
26737803 GGGTAGGGTTTTGT-ATTAAATTA
1 GGTTAGGGTTTT-TAATTAAATTA
26737826 GGTTAGGGTTTTGT-ATTAAATTA
1 GGTTAGGGTTTT-TAATTAAATTA
*
26737849 GGTTAGGGTTTTT-A--AAGTTAA
1 GGTTAGGGTTTTTAATTAAATT-A
26737870 GGTTTAGGGTTTTTAAGTT--A--A
1 GG-TTAGGGTTTTTAA-TTAAATTA
*
26737891 GGTTTAGAGTTTTTAATTAAATTA
1 GG-TTAGGGTTTTTAATTAAATTA
26737915 GGTTAGGGTTAGTGTTTTTAATTAAATTA
1 GGTTA--G---G-GTTTTTAATTAAATTA
*
26737944 GGTTAGGGTTAGGGCTTTTCATTAAATTA
1 GGTTAGGG-T-----TTTTAATTAAATTA
*
26737973 GGGTAGGGTTTTGT-ATTAAATTA
1 GGTTAGGGTTTT-TAATTAAATTA
*
26737996 GGTTAGGGTTTTT-A--AAGTTAA
1 GGTTAGGGTTTTTAATTAAATT-A
26738017 GGTTTAGGGTTTTTAATTAAATTA
1 GG-TTAGGGTTTTTAATTAAATTA
26738041 GGTTAGGGTTAGGATTTTTAATTAAATTA
1 GGTTA--G---GG-TTTTTAATTAAATTA
*
26738070 GGTTAGGGTTAGGGTTTTGTATTAAATTA
1 GGTTAGGG-T----TTTT-AATTAAATTA
*
26738099 GGTTAGGGTTTTT-A--AAGTTAA
1 GGTTAGGGTTTTTAATTAAATT-A
26738120 GGTTTAGGGTTTTTAAGTT--A--A
1 GG-TTAGGGTTTTTAA-TTAAATTA
*
26738141 GGTTTAGGGTTTTTATTTAAATTAGGTTA
1 GG-TTAGGGTTTTTAATT-AA--A--TTA
26738170 GGGTTAGGGTTTTTAATTAAATTA
1 -GGTTAGGGTTTTTAATTAAATTA
26738194 GGTTAGGGTTAGGGCTTTTAATTAAATTA
1 GGTTAGGG-T-----TTTTAATTAAATTA
** *
26738223 GGTTAGGGTTAAGGTTTGGGTTTTTAATTA
1 GGTTAGGGTT----TTT---AATTAAATTA
26738253 AATTAGGTTAGGG--TTTAAGGTTAAATTA
1 -----GGTTAGGGTTTTTAA--TTAAATTA
*
26738281 GGTTAGGGTTTTT-A--AAGTTAA
1 GGTTAGGGTTTTTAATTAAATT-A
*
26738302 GGTTTAGGGTTTTTAGTT--A--A
1 GG-TTAGGGTTTTTAATTAAATTA
26738322 GGTTTAGGGTTTTTAATTAAATTA
1 GG-TTAGGGTTTTTAATTAAATTA
26738346 GGTTAGAGTTAAGGTTTTTAATTAAATTA
1 GGTT--AG----GGTTTTTAATTAAATTA
26738375 GGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
*
26738398 GGGTAGGGTTTTGT-ATTAAATTA
1 GGTTAGGGTTTT-TAATTAAATTA
*
26738421 GGTTAGGGTTTTT-A--AAGTTAA
1 GGTTAGGGTTTTTAATTAAATT-A
26738442 GGTTTAGGGTTTTTAAGTT--A--A
1 GG-TTAGGGTTTTTAA-TTAAATTA
26738463 GGTTTAGGGTTTTTAATTAAATTA
1 GG-TTAGGGTTTTTAATTAAATTA
****
26738487 GGTTAGGGTTTAGGGTTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
26738510 GGTTAGGGTTTTTA
1 GGTTAGGGTTTTTA
26738524 TTACATCAAA
Statistics
Matches: 602, Mismatches: 38, Indels: 214
0.70 0.04 0.25
Matches are distributed among these distances:
20 44 0.07
21 64 0.11
22 65 0.11
23 183 0.30
24 32 0.05
25 12 0.02
26 2 0.00
27 7 0.01
28 20 0.03
29 156 0.26
30 9 0.01
35 8 0.01
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (23 bp):
GGTTAGGGTTTTTAATTAAATTA
Found at i:26737879 original size:22 final size:22
Alignment explanation
Indices: 26737851--26737906 Score: 96
Period size: 21 Copynumber: 2.6 Consensus size: 22
26737841 TTAAATTAGG
26737851 TTAGGGTTTTTAAAGTTAAGGT
1 TTAGGGTTTTTAAAGTTAAGGT
26737873 TTAGGGTTTTT-AAGTTAAGGT
1 TTAGGGTTTTTAAAGTTAAGGT
*
26737894 TTAGAGTTTTTAA
1 TTAGGGTTTTTAA
26737907 TTAAATTAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 20 0.62
22 12 0.38
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (22 bp):
TTAGGGTTTTTAAAGTTAAGGT
Found at i:26737972 original size:34 final size:29
Alignment explanation
Indices: 26737745--26737982 Score: 164
Period size: 29 Copynumber: 8.3 Consensus size: 29
26737735 ATTAGGTTAG
26737745 GGTTAGGGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTAGGGTTTTTAATTAAATTA
26737774 GGTTAGGGTTAGGGTTTTTAATT-AA--A
1 GGTTAGGGTTAGGGTTTTTAATTAAATTA
26737800 --TTAGGG-TAGGGTTTTGT-ATTAAATTA
1 GGTTAGGGTTAGGGTTTT-TAATTAAATTA
*
26737826 GGTTAGGG-T----TTTGT-ATTAAATTA
1 GGTTAGGGTTAGGGTTTTTAATTAAATTA
** * *
26737849 GGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTT--TTTA
1 GGTTAGGG---TTAGGGTT----TTTA--ATTAAATTA
* * *
26737885 AGTTAAGGTTTAGAGTTTTTAATTAAATTA
1 GGTT-AGGGTTAGGGTTTTTAATTAAATTA
*
26737915 GGTTAGGGTTAGTGTTTTTAATTAAATTA
1 GGTTAGGGTTAGGGTTTTTAATTAAATTA
* *
26737944 GGTTAGGGTTAGGGCTTTTCATTAAATTA
1 GGTTAGGGTTAGGGTTTTTAATTAAATTA
*
26737973 GGGTAGGGTT
1 GGTTAGGGTT
26737983 TTGTATTAAA
Statistics
Matches: 169, Mismatches: 16, Indels: 48
0.73 0.07 0.21
Matches are distributed among these distances:
23 30 0.18
24 12 0.07
26 2 0.01
27 1 0.01
28 11 0.07
29 81 0.48
30 10 0.06
31 2 0.01
34 7 0.04
35 2 0.01
36 6 0.04
37 3 0.02
38 2 0.01
ACGTcount: A:0.26, C:0.01, G:0.28, T:0.45
Consensus pattern (29 bp):
GGTTAGGGTTAGGGTTTTTAATTAAATTA
Found at i:26737980 original size:124 final size:123
Alignment explanation
Indices: 26737826--26738232 Score: 651
Period size: 124 Copynumber: 3.3 Consensus size: 123
26737816 TATTAAATTA
26737826 GGTTAGGGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTAA
1 GGTTAGGGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTAA
*
26737891 GGTTTAGAGTTTTTAATTAAATTAGGTTAGGGTTAGTGTTTTTAATTAAATTAGGTTAG
66 GGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAG-GTTTTTAATTAAATTAGGTTAG
* * *
26737950 GGTTAGGGCTTTT-CATTAAATTAGGGTAGGGTTTTGTATTAAATT-AGG-TTAGGGTTTTTAAA
1 GGTTAGGG-TTTTGTATTAAATTAGGTTAGGGTTTT-TA--AAGTTAAGGTTTAGGGTTTTT-AA
26738012 GTTAAGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGATTTTTAATTAAATTAGGTTAG
61 GTTAAGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGG-TTTTTAATTAAATTAGGTTAG
26738076 GGTTAGGGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTAA
1 GGTTAGGGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTAA
*
26738141 GGTTTAGGGTTTTTATTTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAG
66 GGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTA-GGTTTTTAATTAAATTAGGTTAG
*
26738200 GGTTAGGGCTTTT-AATTAAATTAGGTTAGGGTT
1 GGTTAGGG-TTTTGTATTAAATTAGGTTAGGGTT
26738233 AAGGTTTGGG
Statistics
Matches: 263, Mismatches: 9, Indels: 22
0.89 0.03 0.07
Matches are distributed among these distances:
123 4 0.02
124 120 0.46
125 41 0.16
126 94 0.36
127 4 0.02
ACGTcount: A:0.27, C:0.01, G:0.27, T:0.46
Consensus pattern (123 bp):
GGTTAGGGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTAA
GGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGTTTTTAATTAAATTAGGTTAG
Found at i:26737983 original size:170 final size:173
Alignment explanation
Indices: 26737652--26738032 Score: 571
Period size: 170 Copynumber: 2.2 Consensus size: 173
26737642 TTAACTTTGT
*
26737652 TTAGGGTTTTTAATTAAATTAGGTTA-GGATTTTAAAGTTAAGGGTTAGAGTTTTTAAGTTAAGG
1 TTAGGGTTTTT-ATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGGTTAGAGTTTTTAAGTTAAGG
26737716 GGTTATGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGG
65 GGTTATGGTTTTTAATTAAATTAGGTTAGGGTTA-GGTT--GGTTTTTAATTAAATTAGGTTAGG
*
26737781 GTTAGGGTTTTTAATTAAATTAGGGTAGGGTTTTGTATTAAATTAGG
127 GTTAGGGCTTTTAATTAAATTAGGGTAGGGTTTTGTATTAAATTAGG
* *
26737828 TTAGGGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTAA-G
1 TTAGGGTTTT-TATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGGTTAGAGTTTTTAAGTTAAGG
*
26737892 GTTTA-GAGTTTTTAATTAAATTAGGTTAGGGTTA-G-T-GTTTTTAATTAAATTAGGTTAGGGT
65 GGTTATG-GTTTTTAATTAAATTAGGTTAGGGTTAGGTTGGTTTTTAATTAAATTAGGTTAGGGT
*
26737953 TAGGGCTTTTCATTAAATTAGGGTAGGGTTTTGTATTAAATTAGG
129 TAGGGCTTTTAATTAAATTAGGGTAGGGTTTTGTATTAAATTAGG
*
26737998 TTAGGGTTTTTA--AAGTTAAGGTTTAGGGTTTTTAA
1 TTAGGGTTTTTATTAAATT-AGG-TTAGGGTTTTTAA
26738033 TTAAATTAGG
Statistics
Matches: 193, Mismatches: 7, Indels: 17
0.89 0.03 0.08
Matches are distributed among these distances:
167 4 0.02
168 3 0.02
169 15 0.08
170 78 0.40
173 1 0.01
174 1 0.01
175 1 0.01
176 56 0.29
177 34 0.18
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.45
Consensus pattern (173 bp):
TTAGGGTTTTTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGGTTAGAGTTTTTAAGTTAAGGG
GTTATGGTTTTTAATTAAATTAGGTTAGGGTTAGGTTGGTTTTTAATTAAATTAGGTTAGGGTTA
GGGCTTTTAATTAAATTAGGGTAGGGTTTTGTATTAAATTAGG
Found at i:26738020 original size:21 final size:20
Alignment explanation
Indices: 26737988--26738032 Score: 65
Period size: 22 Copynumber: 2.2 Consensus size: 20
26737978 GGGTTTTGTA
26737988 TTAAATTAGG-TTAGGGTTT
1 TTAAATTAGGTTTAGGGTTT
26738007 TTAAAGTTAAGGTTTAGGGTTT
1 TTAAA-TT-AGGTTTAGGGTTT
26738029 TTAA
1 TTAA
26738033 TTAAATTAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.22
20 2 0.09
21 3 0.13
22 13 0.57
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (20 bp):
TTAAATTAGGTTTAGGGTTT
Found at i:26738053 original size:29 final size:29
Alignment explanation
Indices: 26738020--26738384 Score: 157
Period size: 29 Copynumber: 12.1 Consensus size: 29
26738010 AAGTTAAGGT
26738020 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
*
26738049 TTAGGATTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
26738078 TTAGGGTTTTGT-ATTAAATTAGGTTAGGG
1 TTAGGGTTTT-TAATTAAATTAGGTTAGGG
** ****** * *
26738107 TTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTAAGG
1 ---TTAGGGTT----TTTAATTAAATTAGGTTAGGG
** * * * * ** * **
26738143 TTTAGGGTTTTTATTTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGG-G
26738173 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
*
26738202 TTAGGGCTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
26738231 TTAAGGTTTGGGTTTTTAATTAAATTAGGTTAGGG
1 TT-A-----GGGTTTTTAATTAAATTAGGTTAGGG
* * ** **
26738266 TTTAAGG--TTAAATTAGGTTAGGGTTTTTAAAG
1 -TTAGGGTTTTTAATTAAATTA-GG---TTAGGG
* **** * *
26738298 TTAAGGTTTAGGGTT--TTTA-GTTAAGGT
1 TTAGGGTTTTTAATTAAATTAGGTT-AGGG
*
26738325 TTAGGGTTTTTAATTAAATTAGGTTAGAG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
*
26738354 TTAAGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
26738383 TT
1 TT
26738385 TTTAATTAAA
Statistics
Matches: 247, Mismatches: 62, Indels: 54
0.68 0.17 0.15
Matches are distributed among these distances:
26 2 0.01
27 11 0.04
28 10 0.04
29 132 0.53
30 25 0.10
31 9 0.04
32 10 0.04
33 8 0.03
35 27 0.11
36 13 0.05
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (29 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGG
Found at i:26738127 original size:22 final size:22
Alignment explanation
Indices: 26738101--26738155 Score: 103
Period size: 21 Copynumber: 2.5 Consensus size: 22
26738091 TTAAATTAGG
26738101 TTAGGGTTTTTAAAGTTAAGGT
1 TTAGGGTTTTTAAAGTTAAGGT
26738123 TTAGGGTTTTT-AAGTTAAGGT
1 TTAGGGTTTTTAAAGTTAAGGT
26738144 TTAGGGTTTTTA
1 TTAGGGTTTTTA
26738156 TTTAAATTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.66
22 11 0.34
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (22 bp):
TTAGGGTTTTTAAAGTTAAGGT
Found at i:26738204 original size:35 final size:35
Alignment explanation
Indices: 26738165--26738267 Score: 137
Period size: 35 Copynumber: 3.1 Consensus size: 35
26738155 ATTTAAATTA
26738165 GGTTAGGGTTAGGGTTTTTAATT-AA--A--TTA-
1 GGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAG
*
26738194 GGTTAGGGTTAGGGCTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAG
* *
26738229 GGTTAAGGTTTGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAG
26738264 GGTT
1 GGTT
26738268 TAAGGTTAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
29 22 0.34
30 2 0.03
32 1 0.02
34 3 0.05
35 36 0.56
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (35 bp):
GGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAG
Found at i:26738227 original size:182 final size:179
Alignment explanation
Indices: 26738020--26738482 Score: 560
Period size: 182 Copynumber: 2.7 Consensus size: 179
26738010 AAGTTAAGGT
* **
26738020 TTAGGGTTTTTAATTAAATTAGGTTAGGGTT-AGGATTT-TTAATTAAATTAGGTTAGGGTTAGG
1 TTAGGGCTTTTAATTAAATTAGGTTAGGGTTAAGG-TTTGTT--TTAAATTAAATTA-GGTTAGG
*
26738083 GTTT-TGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTA
62 GTTTAAG-ATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTT-AGTTAAGGTTTA
* * *
26738147 GGGTTTTTATTTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
125 GGGTTTTTAATTAAATTAGGTTAGAGTTAAGGTTTTTAATTAAATTAGGTTAGGG
*
26738202 TTAGGGCTTTTAATTAAATTAGGTTAGGGTTAAGGTTTGGGTTTTTAATTAAATTAGGTTAGGGT
1 TTAGGGCTTTTAATTAAATTAGGTTAGGGTTAAGGTTT--GTTTTAAATTAAATTAGGTTAGGGT
*
26738267 TTAAGGTTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAGTTAAGGTTTAGGGT
64 TTAAGATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAGTTAAGGTTTAGGGT
26738332 TTTTAATTAAATTAGGTTAGAGTTAAGGTTTTTAATTAAATTAGGTTAGGG
129 TTTTAATTAAATTAGGTTAGAGTTAAGGTTTTTAATTAAATTAGGTTAGGG
*
26738383 -T-----TTTTAATTAAATTAGGGTAGGG-T----TTTG---T--ATTAAATTAGGTTAGGGTTT
1 TTAGGGCTTTTAATTAAATTAGGTTAGGGTTAAGGTTTGTTTTAAATTAAATTAGGTTAGGGTTT
*
26738432 ----TTAAAGTTAAGGTTTAGGGTTTTT-AAGTTAAGGTTTAGGGTTTTTAATTAA
66 AAGATTAAA-TT-AGG-TTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAGTTAA
26738483 ATTAGGTTAG
Statistics
Matches: 262, Mismatches: 11, Indels: 37
0.85 0.04 0.12
Matches are distributed among these distances:
159 5 0.02
160 2 0.01
161 29 0.11
162 11 0.04
163 20 0.08
165 1 0.00
168 1 0.00
170 3 0.01
174 1 0.00
175 21 0.08
180 1 0.00
181 64 0.24
182 87 0.33
183 14 0.05
185 2 0.01
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (179 bp):
TTAGGGCTTTTAATTAAATTAGGTTAGGGTTAAGGTTTGTTTTAAATTAAATTAGGTTAGGGTTT
AAGATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAGTTAAGGTTTAGGGTTT
TTAATTAAATTAGGTTAGAGTTAAGGTTTTTAATTAAATTAGGTTAGGG
Found at i:26738277 original size:58 final size:58
Alignment explanation
Indices: 26738165--26738290 Score: 155
Period size: 64 Copynumber: 2.1 Consensus size: 58
26738155 ATTTAAATTA
* *
26738165 GGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGCTTTTAATTAAATTAGGTTAG
1 GGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAAGG----T--TTAAATTAGGTTAG
*
26738229 GGTTAAGGTTTGGGTTTTTAATTAAATTAGGTTAGGGTTTAAGG-TTAAATTAGGTTAG
1 GGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGGG-TTAAGGTTTAAATTAGGTTAG
26738287 GGTT
1 GGTT
26738291 TTTAAAGTTA
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
58 18 0.31
64 35 0.60
65 5 0.09
ACGTcount: A:0.26, C:0.01, G:0.30, T:0.43
Consensus pattern (58 bp):
GGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAAGGTTTAAATTAGGTTAG
Found at i:26738321 original size:20 final size:20
Alignment explanation
Indices: 26738283--26738341 Score: 91
Period size: 20 Copynumber: 2.9 Consensus size: 20
26738273 TTAAATTAGG
26738283 TTAGGGTTTTTAAAGTTAAGGT
1 TTAGGGTTTTT--AGTTAAGGT
26738305 TTAGGGTTTTTAGTTAAGGT
1 TTAGGGTTTTTAGTTAAGGT
*
26738325 TTAGGGTTTTTAATTAA
1 TTAGGGTTTTTAGTTAA
26738342 ATTAGGTTAG
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
20 25 0.69
22 11 0.31
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.49
Consensus pattern (20 bp):
TTAGGGTTTTTAGTTAAGGT
Found at i:26738394 original size:117 final size:116
Alignment explanation
Indices: 26738202--26738524 Score: 346
Period size: 112 Copynumber: 2.8 Consensus size: 116
26738192 TAGGTTAGGG
*
26738202 TTAGGGCTTTTAATTAAATTAGGTTAGGGTTAAGGTTTGGGTTTTTAATTAAATTAGGTTAGGG-
1 TTAGGGTTTTTAATTAAATTAGGTTA-GGTTAA------GGTTTTTAATTAAATTAGGTTAGGGT
*
26738266 -TTTAAGGTTAAATTAGGTTAGGGTTTTTA-AAGTTAAGGTTTAGGGTTTTT-AGTTAAGGT
59 TTTTAA--TTAAATTAGGTTAGGGTTTTTATAAATT-AGG-TTAGGGTTTTTAAGTTAAGGT
26738325 TTAGGGTTTTTAATTAAATTAGGTTAGAGTTAAGGTTTTTAATTAAATTAGGTTAGGGTTTTTAA
1 TTAGGGTTTTTAATTAAATTAGGTTAG-GTTAAGGTTTTTAATTAAATTAGGTTAGGGTTTTTAA
*
26738390 TTAAATTAGGGTAGGGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGT
65 TTAAATTAGGTTAGGGTTTT-TA-TAAATTAGGTTAGGGTTTTT-AAGTTAAGGT
* ****
26738445 TTAGGGTTTTTAAGTT--A--AGG-T---TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGG
1 TTAGGGTTTTTAA-TTAAATTAGGTTAGGTTAAGGTTTTTAATTAAATTAGGTTAGGGTTTTTAA
26738502 TTAAATTAGGTTAGGGTTTTTAT
65 TTAAATTAGGTTAGGGTTTTTAT
26738525 TACATCAAAT
Statistics
Matches: 182, Mismatches: 9, Indels: 31
0.82 0.04 0.14
Matches are distributed among these distances:
110 1 0.01
111 2 0.01
112 50 0.27
116 1 0.01
117 47 0.26
118 13 0.07
119 9 0.05
120 26 0.14
121 2 0.01
122 1 0.01
123 30 0.16
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (116 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGTTAAGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAT
TAAATTAGGTTAGGGTTTTTATAAATTAGGTTAGGGTTTTTAAGTTAAGGT
Found at i:26738407 original size:29 final size:28
Alignment explanation
Indices: 26738325--26738407 Score: 95
Period size: 29 Copynumber: 3.1 Consensus size: 28
26738315 TAGTTAAGGT
*
26738325 TTAGGGTTTTTAATTAAATTAGGTTAGAG
1 TTAGGGTTTTTAATTAAATTAGG-TAGGG
*
26738354 TTAAGGTTTTTAATTAAA-T---TA-GG
1 TTAGGGTTTTTAATTAAATTAGGTAGGG
26738377 TTAGGGTTTTTAATTAAATTAGGGTAGGG
1 TTAGGGTTTTTAATTAAATTA-GGTAGGG
26738406 TT
1 TT
26738408 TTGTATTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
23 18 0.40
24 3 0.07
28 3 0.07
29 21 0.47
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (28 bp):
TTAGGGTTTTTAATTAAATTAGGTAGGG
Found at i:26738547 original size:25 final size:25
Alignment explanation
Indices: 26738519--26738656 Score: 173
Period size: 25 Copynumber: 5.7 Consensus size: 25
26738509 AGGTTAGGGT
26738519 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
26738544 TTTTATTACATCAAAT-AA-TATC-A
1 TTTTATTACATCAAATAAACT-TCTA
** *
26738567 --AAATAAC-TCGAAA-AAACTTCTA
1 TTTTATTACATC-AAATAAACTTCTA
26738589 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
*
26738614 TTTTAGTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
26738639 TTTTATTACATCAAATAA
1 TTTTATTACATCAAATAA
26738657 TATAAAAATA
Statistics
Matches: 96, Mismatches: 8, Indels: 18
0.79 0.07 0.15
Matches are distributed among these distances:
20 2 0.02
21 11 0.11
22 2 0.02
23 2 0.02
24 11 0.11
25 68 0.71
ACGTcount: A:0.43, C:0.15, G:0.01, T:0.40
Consensus pattern (25 bp):
TTTTATTACATCAAATAAACTTCTA
Found at i:26738599 original size:45 final size:44
Alignment explanation
Indices: 26738529--26738707 Score: 200
Period size: 45 Copynumber: 3.9 Consensus size: 44
26738519 TTTTATTACA
26738529 TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
1 TCAAA-AAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
***
26738574 TCGAAAAAACTTCTATTTTATTACATCAAATAA-ACTTCTATTTTAGTAC
1 TC-AAAAAACTTCTATTTTATTACATCAAATAATA--TC-AAAATA--AC
*
26738623 ATCAAATAAACTTCTATTTTATTACATCAAATAATATAAAAATAAC
1 -TCAAA-AAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
* *
26738669 TCAAAAAATTTCTATTCTT-TTACATAAAATAATATCAAA
1 TCAAAAAACTTCTATT-TTATTACATCAAATAATATCAAA
26738708 TATTCAAAAT
Statistics
Matches: 114, Mismatches: 10, Indels: 21
0.79 0.07 0.14
Matches are distributed among these distances:
44 29 0.25
45 36 0.32
46 7 0.06
47 3 0.03
48 3 0.03
49 6 0.05
50 29 0.25
51 1 0.01
ACGTcount: A:0.47, C:0.15, G:0.01, T:0.37
Consensus pattern (44 bp):
TCAAAAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
Found at i:26739828 original size:7 final size:7
Alignment explanation
Indices: 26739809--26739842 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
26739799 AAATATTAGT
26739809 TAAATAC
1 TAAATAC
26739816 -ATAATAC
1 TA-AATAC
26739823 TAAATAC
1 TAAATAC
26739830 TAAATAC
1 TAAATAC
26739837 TAAATA
1 TAAATA
26739843 TCAAACGACT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 1 0.04
7 23 0.92
8 1 0.04
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (7 bp):
TAAATAC
Found at i:26740968 original size:11 final size:11
Alignment explanation
Indices: 26740952--26740993 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
26740942 AAAAATGTAG
26740952 TTAAGAGAAAC
1 TTAAGAGAAAC
*
26740963 TTAAGAGGAAC
1 TTAAGAGAAAC
*
26740974 TTAAGAAAAAC
1 TTAAGAGAAAC
26740985 TTAAGAGAA
1 TTAAGAGAA
26740994 TTTTTGAAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.55, C:0.07, G:0.19, T:0.19
Consensus pattern (11 bp):
TTAAGAGAAAC
Found at i:26741492 original size:42 final size:42
Alignment explanation
Indices: 26741453--26741671 Score: 180
Period size: 43 Copynumber: 5.2 Consensus size: 42
26741443 GGGGTTGCTC
* * * *
26741453 AGTGCTGATTCCTCGAATTATTGATTCTAAAGGTGGTTGCTA
1 AGTGCTGATTCCCCGTATTATTGATTATAAAGGTGGTTACTA
*
26741495 AGTGCTGATTCCACCGTA-TATTTGATTGTGAAAGG-GGTTACTA
1 AGTGCTGATTCC-CCGTATTA-TTGATTAT-AAAGGTGGTTACTA
* * * *
26741538 TGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTACTA
1 AGTGCTGATTCCCCGTATTATTGATTATAAAGGTGGTTACTA
* *
26741580 AGTGCTGATTCCACCGTATCT-TTGATTGTGAAAGG-GGTTGCTA
1 AGTGCTGATTCC-CCGTAT-TATTGATTAT-AAAGGTGGTTACTA
* * * * *
26741623 TGTGGTGATTCCCCGTATCACTGAATT-T-AAGGTGGTTGCTA
1 AGTGCTGATTCCCCGTATTATTG-ATTATAAAGGTGGTTACTA
*
26741664 AGTACTGA
1 AGTGCTGA
26741672 ATCCATCGAG
Statistics
Matches: 144, Mismatches: 22, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
40 4 0.03
41 18 0.12
42 52 0.36
43 60 0.42
44 10 0.07
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (42 bp):
AGTGCTGATTCCCCGTATTATTGATTATAAAGGTGGTTACTA
Found at i:26741543 original size:43 final size:42
Alignment explanation
Indices: 26741453--26741640 Score: 186
Period size: 43 Copynumber: 4.4 Consensus size: 42
26741443 GGGGTTGCTC
* * * *
26741453 AGTGCTGATTCCTCGAAT-TATTGATTCTAAAGGTGGTTGCTA
1 AGTGCTGATTCCCCGTATAT-TTGATTGTAAAGGTGGTTACTA
26741495 AGTGCTGATTCCACCGTATATTTGATTGTGAAAGG-GGTTACTA
1 AGTGCTGATTCC-CCGTATATTTGATTGT-AAAGGTGGTTACTA
* * * *
26741538 TGTGCTGATTCCCCGTATCA-CTGAATATAAAGGTGGTTACTA
1 AGTGCTGATTCCCCGTAT-ATTTGATTGTAAAGGTGGTTACTA
* *
26741580 AGTGCTGATTCCACCGTATCTTTGATTGTGAAAGG-GGTTGCTA
1 AGTGCTGATTCC-CCGTATATTTGATTGT-AAAGGTGGTTACTA
* *
26741623 TGTGGTGATTCCCCGTAT
1 AGTGCTGATTCCCCGTAT
26741641 CACTGAATTT
Statistics
Matches: 122, Mismatches: 16, Indels: 16
0.79 0.10 0.10
Matches are distributed among these distances:
41 5 0.04
42 48 0.39
43 58 0.48
44 11 0.09
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (42 bp):
AGTGCTGATTCCCCGTATATTTGATTGTAAAGGTGGTTACTA
Found at i:26741585 original size:85 final size:84
Alignment explanation
Indices: 26741480--26741676 Score: 322
Period size: 85 Copynumber: 2.3 Consensus size: 84
26741470 TTATTGATTC
26741480 TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATTTGATTGTGAAAGGGGTTACTATGTGCTG
1 TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATTTGATTGTGAAAGGGGTTACTATGTGCTG
26741545 ATTCCCCGTATCACTGAAT
66 ATTCCCCGTATCACTGAAT
* * * *
26741564 ATAAAGGTGGTTACTAAGTGCTGATTCCACCGTATCTTTGATTGTGAAAGGGGTTGCTATGTGGT
1 -TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATTTGATTGTGAAAGGGGTTACTATGTGCT
26741629 GATTCCCCGTATCACTGAAT
65 GATTCCCCGTATCACTGAAT
* * *
26741649 TTAAGGTGGTTGCTAAGTACTGAATCCA
1 TAAAGGTGGTTGCTAAGTGCTGATTCCA
26741677 TCGAGTAACG
Statistics
Matches: 104, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
84 24 0.23
85 80 0.77
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.34
Consensus pattern (84 bp):
TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATTTGATTGTGAAAGGGGTTACTATGTGCTG
ATTCCCCGTATCACTGAAT
Found at i:26747583 original size:26 final size:26
Alignment explanation
Indices: 26747547--26747596 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
26747537 TTGGATAAAA
26747547 AGGGGTCGCTAAGTGCAGATTCCCCG
1 AGGGGTCGCTAAGTGCAGATTCCCCG
* **
26747573 AGGGGTTGCTAAGTGTTGATTCCC
1 AGGGGTCGCTAAGTGCAGATTCCC
26747597 TGAATTATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.18, C:0.22, G:0.34, T:0.26
Consensus pattern (26 bp):
AGGGGTCGCTAAGTGCAGATTCCCCG
Found at i:26747679 original size:43 final size:44
Alignment explanation
Indices: 26747612--26747763 Score: 161
Period size: 43 Copynumber: 3.5 Consensus size: 44
26747602 TATTGATTTT
* *
26747612 AAAGGTGGTTGTTAAGTGTTGATTCCACCGTATATTTAATTGTG
1 AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATTTAATTGTG
* * * *
26747656 AAAGG-GGTTGCTACGTGCTGATTCC-CCGTATCA-CTAAATAT-
1 AAAGGTGGTTGCTAAGTGCTGATTCCACCGTAT-ATTTAATTGTG
* * *
26747697 AAAGGTGGTTGCTAAGTGCTGATTCCATCGTATCTTTGATTGTG
1 AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATTTAATTGTG
* *
26747741 AAAGG-GGTTGCTATGTGGTGATT
1 AAAGGTGGTTGCTAAGTGCTGATT
26747764 TCTCGTATCA
Statistics
Matches: 88, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
41 5 0.06
42 30 0.34
43 43 0.49
44 10 0.11
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.36
Consensus pattern (44 bp):
AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATTTAATTGTG
Found at i:26747707 original size:42 final size:43
Alignment explanation
Indices: 26747611--26747729 Score: 136
Period size: 42 Copynumber: 2.8 Consensus size: 43
26747601 TTATTGATTT
* * * * *
26747611 TAAAGGTGGTTGTTAAGTGTTGATTCCACCGTATATTTAATTG
1 TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATCTAAATA
*
26747654 TGAAAGG-GGTTGCTACGTGCTGATTCC-CCGTATCA-CTAAATA
1 T-AAAGGTGGTTGCTAAGTGCTGATTCCACCGTAT-ATCTAAATA
*
26747696 TAAAGGTGGTTGCTAAGTGCTGATTCCATCGTAT
1 TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTAT
26747730 CTTTGATTGT
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
41 5 0.08
42 30 0.47
43 24 0.38
44 5 0.08
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.35
Consensus pattern (43 bp):
TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATCTAAATA
Found at i:26747720 original size:85 final size:84
Alignment explanation
Indices: 26747610--26747810 Score: 267
Period size: 85 Copynumber: 2.4 Consensus size: 84
26747600 ATTATTGATT
* *
26747610 TTAAAGGTGGTTGTTAAGTGTTGATTCCACCGTATATTTAATTGTGAAAGGGGTTGCTACGTGCT
1 TTAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATTTAATTGTGAAAGGGGTTGCTACGTGCT
26747675 GATTCCCCGTATCACTAAA
66 GATTCCCCGTATCACTAAA
* * * * *
26747694 TATAAAGGTGGTTGCTAAGTGCTGATTCCATCGTATCTTTGATTGTGAAAGGGGTTGCTATGTGG
1 T-TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATTTAATTGTGAAAGGGGTTGCTACGTGC
* * *
26747759 TGATTTCTCGTATCACTGAA
65 TGATTCCCCGTATCACTAAA
* * * *
26747779 TTTAAGTTGGTTGCTAAATGCTGAATCCACCG
1 TTAAAGGTGGTTGCTAAGTGCTGATTCCACCG
26747811 AGAAACGGAT
Statistics
Matches: 101, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
84 27 0.27
85 74 0.73
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (84 bp):
TTAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATTTAATTGTGAAAGGGGTTGCTACGTGCT
GATTCCCCGTATCACTAAA
Found at i:26754908 original size:14 final size:14
Alignment explanation
Indices: 26754891--26754942 Score: 70
Period size: 14 Copynumber: 3.7 Consensus size: 14
26754881 TGTTTTAGCC
26754891 TTTTATTTTTTTTA
1 TTTTATTTTTTTTA
26754905 TTTTATTTTTTTTA
1 TTTTATTTTTTTTA
*
26754919 TTCTT-TTATTTTTA
1 TT-TTATTTTTTTTA
*
26754933 TTTTCTTTTT
1 TTTTATTTTT
26754943 AAATATTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
13 2 0.06
14 30 0.88
15 2 0.06
ACGTcount: A:0.12, C:0.04, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTATTTTTTTTA
Found at i:26754925 original size:23 final size:24
Alignment explanation
Indices: 26754890--26754941 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
26754880 TTGTTTTAGC
*
26754890 CTTTTATT-TTTTTTATTTTATTTT
1 CTTTTATTCTTTTAT-TTTTATTTT
26754914 -TTTTATTCTTTTATTTTTATTTT
1 CTTTTATTCTTTTATTTTTATTTT
26754937 CTTTT
1 CTTTT
26754942 TAAATATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 16 0.64
24 9 0.36
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.83
Consensus pattern (24 bp):
CTTTTATTCTTTTATTTTTATTTT
Found at i:26754943 original size:17 final size:17
Alignment explanation
Indices: 26754905--26754941 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
26754895 ATTTTTTTTA
*
26754905 TTTTATTTTTTTTATTC
1 TTTTATTTTTATTATTC
26754922 TTTTATTTTTATT-TTC
1 TTTTATTTTTATTATTC
26754938 TTTT
1 TTTT
26754942 TAAATATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.11, C:0.05, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTATTTTTATTATTC
Found at i:26755052 original size:60 final size:60
Alignment explanation
Indices: 26754984--26755162 Score: 152
Period size: 60 Copynumber: 3.0 Consensus size: 60
26754974 TAAAAAAAGC
** * * **
26754984 ATAAATTACATTTTAGCCCCTGATCTTTTC-AAAAATTACATTTTGACCCCAAAATTTTCT
1 ATAAATTACATTTTAGCCCCT-AAATTTTCTAAAAATTACACTTTGACCCCAAAACTTTAA
** **
26755044 ATAAATTACATTTT-GACCCCTAAATTTTCTTTAAATTACACTTTGACCCCTTAACTTTAA
1 ATAAATTACATTTTAG-CCCCTAAATTTTCTAAAAATTACACTTTGACCCCAAAACTTTAA
* * * *
26755104 ATAAATTACATTGTAGCCCC-ATATTTTCCT-AAAATTTCATTTTTG-CCCCAGAAACTTTA
1 ATAAATTACATTTTAGCCCCTAAATTTT-CTAAAAATTACA-CTTTGACCCCA-AAACTTTA
26755163 CACCCGTTAC
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
59 24 0.25
60 71 0.74
61 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.05, T:0.40
Consensus pattern (60 bp):
ATAAATTACATTTTAGCCCCTAAATTTTCTAAAAATTACACTTTGACCCCAAAACTTTAA
Found at i:26755094 original size:30 final size:30
Alignment explanation
Indices: 26754984--26755115 Score: 142
Period size: 30 Copynumber: 4.4 Consensus size: 30
26754974 TAAAAAAAGC
**
26754984 ATAAATTACATTTT-AGCCCCTGATCTTTTC-
1 ATAAATTACATTTTGA-CCCCT-AAATTTTCT
* *
26755014 AAAAATTACATTTTGACCCCAAAATTTTCT
1 ATAAATTACATTTTGACCCCTAAATTTTCT
26755044 ATAAATTACATTTTGACCCCTAAATTTTCT
1 ATAAATTACATTTTGACCCCTAAATTTTCT
* * * * **
26755074 TTAAATTACACTTTGACCCCTTAACTTTAA
1 ATAAATTACATTTTGACCCCTAAATTTTCT
26755104 ATAAATTACATT
1 ATAAATTACATT
26755116 GTAGCCCCAT
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
29 6 0.07
30 79 0.92
31 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.04, T:0.41
Consensus pattern (30 bp):
ATAAATTACATTTTGACCCCTAAATTTTCT
Found at i:26755782 original size:16 final size:16
Alignment explanation
Indices: 26755761--26755794 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
26755751 ATATTCTGGT
26755761 GACCCGAACCGGATCC
1 GACCCGAACCGGATCC
26755777 GACCCGAACCGGATCC
1 GACCCGAACCGGATCC
26755793 GA
1 GA
26755795 TCCAAGCTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.41, G:0.26, T:0.06
Consensus pattern (16 bp):
GACCCGAACCGGATCC
Found at i:26756004 original size:20 final size:20
Alignment explanation
Indices: 26755979--26756032 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
26755969 CGCGTGCCCA
*
26755979 GGCCCAGCGCACCAGCGTCC
1 GGCCCAGCGCACCAGCATCC
* *
26755999 GGCCCAGTGCACCAGCATTC
1 GGCCCAGCGCACCAGCATCC
26756019 GGCCCAGCGC-CCAG
1 GGCCCAGCGCACCAG
26756033 GCCCAACGTC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 4 0.13
20 26 0.87
ACGTcount: A:0.17, C:0.46, G:0.30, T:0.07
Consensus pattern (20 bp):
GGCCCAGCGCACCAGCATCC
Found at i:26756766 original size:17 final size:17
Alignment explanation
Indices: 26756746--26756885 Score: 52
Period size: 19 Copynumber: 7.6 Consensus size: 17
26756736 TCATGTTTGA
26756746 AAAAAAATTCGTGTTTC
1 AAAAAAATTCGTGTTTC
26756763 --AAAAATTCCTGTGTTT-
1 AAAAAAATT-C-GTGTTTC
* **
26756779 TAAAAGTTTCCGTGTTTTC
1 AAAAAAATT-CGTG-TTTC
26756798 AAAAAAAAATCTTCGTGTTTCC
1 --AAAAAAA--TTCGTGTTT-C
26756820 AAAAAAATTTCGTGTTTTC
1 AAAAAAA-TTCGTG-TTTC
** *
26756839 TAAAAATTTTCGTATTTC
1 -AAAAAAATTCGTGTTTC
** *
26756857 AAAAATTTTCATGTTTTTC
1 AAAAAAATTC--GTGTTTC
26756876 AAAAAAATTC
1 AAAAAAATTC
26756886 CCATGTTTTG
Statistics
Matches: 96, Mismatches: 12, Indels: 28
0.71 0.09 0.21
Matches are distributed among these distances:
15 7 0.07
16 1 0.01
17 19 0.20
18 14 0.15
19 26 0.27
20 15 0.16
21 7 0.07
22 5 0.05
23 2 0.02
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.41
Consensus pattern (17 bp):
AAAAAAATTCGTGTTTC
Found at i:26756825 original size:19 final size:17
Alignment explanation
Indices: 26756700--26757091 Score: 131
Period size: 17 Copynumber: 21.9 Consensus size: 17
26756690 AAAAAATTAT
* *
26756700 TTTCGTGTTTC-TAATA
1 TTTCGTGTTTCAAAAAA
*
26756716 TTCTCGTATTTC-AAAAA
1 TT-TCGTGTTTCAAAAAA
* *
26756733 TTGTCATGTTTGAAAAAAA
1 TT-TCGTGTTT-CAAAAAA
*
26756752 ATTCGTGTTTC-AAAAA
1 TTTCGTGTTTCAAAAAA
* * *
26756768 TTCCTGTGTTT-TAAAAG
1 TTTC-GTGTTTCAAAAAA
26756785 TTTCCGTGTTTTCAAAAAAAAA
1 TTT-CGTG-TTTC---AAAAAA
26756807 TCTTCGTGTTTCCAAAAAAA
1 T-TTCGTGTTT-C-AAAAAA
*
26756827 TTTCGTGTTTTCTAAAAAT
1 TTTCGTG-TTTC-AAAAAA
* *
26756846 TTTCGTATTTCAAAAAT
1 TTTCGTGTTTCAAAAAA
*
26756863 TTTCATGTTTTTCAAAAAAA
1 TTTC--GTGTTTC-AAAAAA
* * ***
26756883 TTCCCATGTTT-TGCAAA
1 TT-TCGTGTTTCAAAAAA
* *
26756900 TTACCGTGTTGT-AAAAAT
1 TT-TCGTGTT-TCAAAAAA
*
26756918 TTTCAG-GTTTTC-AAAAT
1 TTTC-GTG-TTTCAAAAAA
*
26756935 TTTCGTGTCTCAAAAAA
1 TTTCGTGTTTCAAAAAA
*
26756952 -TTCTGATTTTTCAAAAAA
1 TTTC-G-TGTTTCAAAAAA
26756970 TTTCGTGCTTTC-AAAAA
1 TTTCGTG-TTTCAAAAAA
* * *
26756987 TTTCGGTGATCCAAAAAT
1 TTTC-GTGTTTCAAAAAA
* *
26757005 TTTTGTGTTTTCAAAAAT
1 TTTCGTG-TTTCAAAAAA
* * *
26757023 TTTCGTGTTTTTAAGAAT
1 TTTCGTG-TTTCAAAAAA
*
26757041 TTTCGTGTTTC-TAAAA
1 TTTCGTGTTTCAAAAAA
*
26757057 TTCTCGTGTTTTAAAAAAA
1 TT-TCGTG-TTTCAAAAAA
26757076 TTTCGTGTTCTCAAAA
1 TTTCGTGTT-TCAAAA
26757092 TATAATTATT
Statistics
Matches: 286, Mismatches: 55, Indels: 68
0.70 0.13 0.17
Matches are distributed among these distances:
16 20 0.07
17 98 0.34
18 91 0.32
19 43 0.15
20 18 0.06
21 4 0.01
22 10 0.03
23 2 0.01
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (17 bp):
TTTCGTGTTTCAAAAAA
Found at i:26756825 original size:20 final size:19
Alignment explanation
Indices: 26756800--26756884 Score: 75
Period size: 19 Copynumber: 4.5 Consensus size: 19
26756790 GTGTTTTCAA
26756800 AAAAAAATCTTCGTGTTTCC
1 AAAAAAAT-TTCGTGTTTCC
*
26756820 AAAAAAATTTCGTGTTTTC
1 AAAAAAATTTCGTGTTTCC
* * *
26756839 TAAAAATTTTCGTATTT-C
1 AAAAAAATTTCGTGTTTCC
* * *
26756857 -AAAAATTTTCATGTTTTTC
1 AAAAAAATTTCGTG-TTTCC
26756876 AAAAAAATT
1 AAAAAAATT
26756885 CCCATGTTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
17 11 0.20
18 4 0.07
19 25 0.45
20 15 0.27
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.42
Consensus pattern (19 bp):
AAAAAAATTTCGTGTTTCC
Found at i:26756882 original size:38 final size:39
Alignment explanation
Indices: 26756791--26756884 Score: 95
Period size: 38 Copynumber: 2.4 Consensus size: 39
26756781 AAAGTTTCCG
* * *
26756791 TGTTTTCAAAAAAAAATCTTCGTGTTTCCAAAAAAATTTCG
1 TGTTTTC--AAAAAAATTTTCGTATTTCCAAAAAAATTTCA
* *
26756832 TGTTTTC-TAAAAATTTTCGTATTT-C-AAAAATTTTCA
1 TGTTTTCAAAAAAATTTTCGTATTTCCAAAAAAATTTCA
26756868 TGTTTTTCAAAAAAATT
1 TG-TTTTCAAAAAAATT
26756885 CCCATGTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
36 11 0.24
37 6 0.13
38 21 0.47
41 7 0.16
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (39 bp):
TGTTTTCAAAAAAATTTTCGTATTTCCAAAAAAATTTCA
Found at i:26756987 original size:35 final size:34
Alignment explanation
Indices: 26756753--26757125 Score: 145
Period size: 35 Copynumber: 10.4 Consensus size: 34
26756743 TGAAAAAAAA
*
26756753 TTCGTGTTTCAAAAATTC-CTGTGTTTT-AAAAGTT
1 TTCGTGTTTCAAAAATTCTC-GT-TTTTCAAAAATT
* * * *
26756787 TCCGTGTTTTCAAAAAAAAATCTTCGTGTTTCCAAAAAAAT
1 TTCGTG-TTTC---AAAAATTC-TCGT-TTTTC-AAAAATT
* *
26756828 TTCGTGTTTTCTAAAAATTTTCGTATTTCAAAAATT
1 TTCGTG-TTTC-AAAAATTCTCGTTTTTCAAAAATT
* * *
26756864 TTCATGTTTTTCAAAAAAATTCCCATGTTTTGC--AAATT
1 TTC--GTGTTTC--AAAAATTCTC--GTTTTTCAAAAATT
** * *
26756902 ACCGTGTTGT-AAAAATTTTCAGGTTTTC-AAAATT
1 TTCGTGTT-TCAAAAATTCTC-GTTTTTCAAAAATT
* *
26756936 TTCGTGTCTCAAAAAATTCT-GATTTTTCAAAAAAT
1 TTCGTGTTTC-AAAAATTCTCG-TTTTTCAAAAATT
** *
26756971 TTCGTGCTTTCAAAAATT-TCGGTGATCCAAAAATT
1 TTCGTG-TTTCAAAAATTCTC-GTTTTTCAAAAATT
* * * *
26757006 TTTGTGTTTTCAAAAATTTTCGTGTTTTTAAGAATT
1 TTCGTG-TTTCAAAAATTCTCGT-TTTTCAAAAATT
* * *
26757042 TTCGTGTTTCTAAAATTCTCGTGTTTTAAAAAAAT
1 TTCGTGTTTCAAAAATTCTCGT-TTTTCAAAAATT
** * *
26757077 TTCGTGTTCTCAAAATATAAT--TATTTCAAAAATC
1 TTCGTGTT-TCAAAA-ATTCTCGTTTTTCAAAAATT
*
26757111 TTCGTGTTTTAAAAA
1 TTCGTGTTTCAAAAA
26757126 AATTCGTATT
Statistics
Matches: 255, Mismatches: 58, Indels: 54
0.69 0.16 0.15
Matches are distributed among these distances:
32 1 0.00
33 12 0.05
34 45 0.18
35 90 0.35
36 36 0.14
37 11 0.04
38 27 0.11
39 12 0.05
40 6 0.02
41 15 0.06
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (34 bp):
TTCGTGTTTCAAAAATTCTCGTTTTTCAAAAATT
Found at i:26757002 original size:53 final size:52
Alignment explanation
Indices: 26756926--26757091 Score: 160
Period size: 53 Copynumber: 3.2 Consensus size: 52
26756916 ATTTTCAGGT
*
26756926 TTTCAAAATTTTCGTGTCTCAAAAAATTCTGAT-TTTTCAAAAAATTTCGTGC
1 TTTCAAAAATTTCGTGTCTCAAAAAATTCTG-TGTTTTCAAAAAATTTCGTGC
* * * *
26756978 TTTCAAAAATTTCGGTGATC-CAAAAATTTTTGTGTTTTCAAAAATTTTCGTGT
1 TTTCAAAAATTTC-GTG-TCTCAAAAAATTCTGTGTTTTCAAAAAATTTCGTGC
* * * * *
26757031 TTTTAAGAATTTTCGTGTTTC-TAAAATTCTCGTGTTTTAAAAAAATTTCGTG-
1 TTTCAA-AAATTTCGTGTCTCAAAAAATTCT-GTGTTTTCAAAAAATTTCGTGC
26757083 TTCTCAAAA
1 TT-TCAAAA
26757092 TATAATTATT
Statistics
Matches: 93, Mismatches: 14, Indels: 14
0.77 0.12 0.12
Matches are distributed among these distances:
52 24 0.26
53 61 0.66
54 8 0.09
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (52 bp):
TTTCAAAAATTTCGTGTCTCAAAAAATTCTGTGTTTTCAAAAAATTTCGTGC
Found at i:26760175 original size:8 final size:7
Alignment explanation
Indices: 26760139--26760178 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
26760129 ACAGATGTGA
26760139 TTTTAG-
1 TTTTAGT
26760145 TTTTAG-
1 TTTTAGT
*
26760151 TTTTGGT
1 TTTTAGT
26760158 TTTTAGT
1 TTTTAGT
26760165 TTTTAGT
1 TTTTAGT
26760172 TTTTAGT
1 TTTTAGT
26760179 AATGTTATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 11 0.35
7 20 0.65
ACGTcount: A:0.12, C:0.00, G:0.17, T:0.70
Consensus pattern (7 bp):
TTTTAGT
Found at i:26763824 original size:21 final size:21
Alignment explanation
Indices: 26763789--26763838 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
26763779 AAATTAAATT
*
26763789 TAATATTTTTCATAA-AGATAAA
1 TAATA-TTATCATAAGA-ATAAA
26763811 TAATATTATCATAAGAATAAA
1 TAATATTATCATAAGAATAAA
*
26763832 TATTATT
1 TAATATT
26763839 TAATTTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 19 0.76
22 6 0.24
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (21 bp):
TAATATTATCATAAGAATAAA
Found at i:26764285 original size:25 final size:27
Alignment explanation
Indices: 26764257--26764315 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 27
26764247 ATATGTATAA
26764257 ATTATATAAATAA-GTAATA-AATTTT
1 ATTATATAAATAATGTAATATAATTTT
* * *
26764282 ATTAT-GAAATAATTTAATATATTTTT
1 ATTATATAAATAATGTAATATAATTTT
26764308 ATTATATA
1 ATTATATA
26764316 TAAAGAAAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
24 6 0.22
25 10 0.37
26 10 0.37
27 1 0.04
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.49
Consensus pattern (27 bp):
ATTATATAAATAATGTAATATAATTTT
Found at i:26767403 original size:16 final size:16
Alignment explanation
Indices: 26767382--26767415 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26767372 CCAATATCCA
* *
26767382 ATTATCATATTTGCAC
1 ATTATCACATTTACAC
26767398 ATTATCACATTTACAC
1 ATTATCACATTTACAC
26767414 AT
1 AT
26767416 ATATATTCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
ATTATCACATTTACAC
Found at i:26771447 original size:176 final size:176
Alignment explanation
Indices: 26771142--26771629 Score: 815
Period size: 176 Copynumber: 2.8 Consensus size: 176
26771132 TCTACAATCG
* * * *
26771142 CTATTTAAATA-T-TTTCTCAAAACTAATAAATTAAT-ATAACTAATGTAAAAGCCTCTTCAACG
1 CTATTTACATATTGTTTCTCAAAACTAATAAATTCATAAAAAATAATGTAAAAGCCTCTTCAACG
*
26771204 TGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACGCTGAAGGTCTCCGGTTCGAGTCCG
66 TGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTGAAGGTCTCCGGTTCGAGTCCG
* *
26771269 GGCGAAGCCATTCATGCAGAATATATTTCTGGTTTTGTACATTTAA
131 GGCGAAGCCATTCATACAGAATATATCTCTGGTTTTGTACATTTAA
26771315 CTATTTACATATTGTTTCTCAAAACTAATAAATTCATAAAAAATAATGTAAAAGCCTCTTCAACG
1 CTATTTACATATTGTTTCTCAAAACTAATAAATTCATAAAAAATAATGTAAAAGCCTCTTCAACG
26771380 TGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTGAAGGTCTCCGGTTCGAGTCCG
66 TGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTGAAGGTCTCCGGTTCGAGTCCG
*
26771445 GGCGAAGCCATTCATATAGAATATATCTCTGGTTTTGTACATTTAA
131 GGCGAAGCCATTCATACAGAATATATCTCTGGTTTTGTACATTTAA
** * * **
26771491 CTATTTACATATTGTTTCTCAAAACTAATAAATTCATAAAAAAT-ATGTTGAAGACT-GTCGTCG
1 CTATTTACATATTGTTTCTCAAAACTAATAAATTCATAAAAAATAATGTAAAAGCCTCTTCAACG
26771554 TGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTGAAGGTCTCCGGTTCGAGTCCG
66 TGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTGAAGGTCTCCGGTTCGAGTCCG
26771619 GGCGAAGCCAT
131 GGCGAAGCCAT
26771630 GTACTCAGAA
Statistics
Matches: 298, Mismatches: 14, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
173 10 0.03
174 81 0.27
175 31 0.10
176 176 0.59
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (176 bp):
CTATTTACATATTGTTTCTCAAAACTAATAAATTCATAAAAAATAATGTAAAAGCCTCTTCAACG
TGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTGAAGGTCTCCGGTTCGAGTCCG
GGCGAAGCCATTCATACAGAATATATCTCTGGTTTTGTACATTTAA
Found at i:26772140 original size:20 final size:20
Alignment explanation
Indices: 26772115--26772154 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
26772105 CGAGAATCAG
26772115 TTTAAAGTTTGGGTAAGCAA
1 TTTAAAGTTTGGGTAAGCAA
26772135 TTTAAAGTTTGGGTAAGCAA
1 TTTAAAGTTTGGGTAAGCAA
26772155 AACCTAATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (20 bp):
TTTAAAGTTTGGGTAAGCAA
Found at i:26773265 original size:19 final size:20
Alignment explanation
Indices: 26773241--26773288 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
26773231 CTTAAAATTT
26773241 TTTTATTTAT-A-TATTTTAA
1 TTTTATTTATGAGTATTTT-A
26773260 TTTTA-TTATGAGTATTTTA
1 TTTTATTTATGAGTATTTTA
*
26773279 TTATATTTAT
1 TTTTATTTAT
26773289 TTTATATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 4 0.16
19 11 0.44
20 10 0.40
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (20 bp):
TTTTATTTATGAGTATTTTA
Found at i:26778188 original size:114 final size:114
Alignment explanation
Indices: 26777988--26778215 Score: 456
Period size: 114 Copynumber: 2.0 Consensus size: 114
26777978 AGAACGTTGA
26777988 GGTTCATATTGACGATGAAGATCAGGCTATGCTATTATTGTGCTCTTTACCCCCTTCATACAAGT
1 GGTTCATATTGACGATGAAGATCAGGCTATGCTATTATTGTGCTCTTTACCCCCTTCATACAAGT
26778053 CTTTCAAGTAGACCCTAATTTACGGCAGAGACAAACTCTTGTTCGAAGG
66 CTTTCAAGTAGACCCTAATTTACGGCAGAGACAAACTCTTGTTCGAAGG
26778102 GGTTCATATTGACGATGAAGATCAGGCTATGCTATTATTGTGCTCTTTACCCCCTTCATACAAGT
1 GGTTCATATTGACGATGAAGATCAGGCTATGCTATTATTGTGCTCTTTACCCCCTTCATACAAGT
26778167 CTTTCAAGTAGACCCTAATTTACGGCAGAGACAAACTCTTGTTCGAAGG
66 CTTTCAAGTAGACCCTAATTTACGGCAGAGACAAACTCTTGTTCGAAGG
26778216 TGTGAAGGGT
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 114 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (114 bp):
GGTTCATATTGACGATGAAGATCAGGCTATGCTATTATTGTGCTCTTTACCCCCTTCATACAAGT
CTTTCAAGTAGACCCTAATTTACGGCAGAGACAAACTCTTGTTCGAAGG
Found at i:26780096 original size:23 final size:24
Alignment explanation
Indices: 26780062--26780114 Score: 74
Period size: 23 Copynumber: 2.2 Consensus size: 24
26780052 ATAGAAAAAA
*
26780062 TAAAAATGAAAAA-TATATATTTTT
1 TAAAAATGAAAAATTATA-AGTTTT
26780086 TAAAAAT-AAAAATTATAAGTTTT
1 TAAAAATGAAAAATTATAAGTTTT
26780109 TAAAAA
1 TAAAAA
26780115 ATATAAATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 16 0.59
24 11 0.41
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (24 bp):
TAAAAATGAAAAATTATAAGTTTT
Found at i:26780115 original size:24 final size:24
Alignment explanation
Indices: 26780063--26780122 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
26780053 TAGAAAAAAT
*
26780063 AAAAATGAAAAA-TATATATTTTTT
1 AAAAAT-AAAAATTATATATTTTTA
26780087 AAAAATAAAAATTATA-AGTTTTTA
1 AAAAATAAAAATTATATA-TTTTTA
*
26780111 AAAAATATAAAT
1 AAAAATAAAAAT
26780123 GATTTTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 6 0.19
24 26 0.81
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (24 bp):
AAAAATAAAAATTATATATTTTTA
Found at i:26780896 original size:31 final size:31
Alignment explanation
Indices: 26780861--26780922 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
26780851 AAGTAGTAAA
26780861 CACATGTAATAAATAACAGAATACTAAAGAT
1 CACATGTAATAAATAACAGAATACTAAAGAT
*
26780892 CACATGTAATAAATAATAGAATACTAAAGAT
1 CACATGTAATAAATAACAGAATACTAAAGAT
26780923 TTGAGCCATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.55, C:0.11, G:0.10, T:0.24
Consensus pattern (31 bp):
CACATGTAATAAATAACAGAATACTAAAGAT
Found at i:26787509 original size:17 final size:16
Alignment explanation
Indices: 26787476--26787507 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26787466 AACTTTAGGG
26787476 GCAAAAATGTAATTTT
1 GCAAAAATGTAATTTT
*
26787492 GCAAAAATGTGATTTT
1 GCAAAAATGTAATTTT
26787508 TGGACTGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.38
Consensus pattern (16 bp):
GCAAAAATGTAATTTT
Found at i:26787784 original size:51 final size:51
Alignment explanation
Indices: 26787658--26787994 Score: 181
Period size: 51 Copynumber: 6.6 Consensus size: 51
26787648 AGTTGCTAGG
* * * * *
26787658 TCACGTTTGTAGTACTATGCGCAGGCTACTACGTGTA-CTGGAAT-G-ATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCT-GAATAGCATA-A
* * * *
26787708 TCGCATGTATAGTACTATGTGCAGGCTACTATGCGTA-CTGAATAGCTTCAA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCTGAATAGCAT-AA
** * ** **
26787759 TCACGTGTGTAGTACTATGTGCAGGCTACTA--CGTATATCGGATGAAAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCT-GAAT-AGCATAA
* * * * * * *
26787810 TCATGTGTGTAGTATTATGTGTAGGCTACTACGTGTACCGGAAT-G-ATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCTGAATAGCATA-A
* * * * * *
26787860 TCGCATGTGCAGTACTATGTGCAGGCTACTATGCGTA-CTGGATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCTGAATAGCAT-AA
* * * * ** **
26787911 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAG-ATGAAAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCTGAAT-AGCATAA
* *
26787962 TTACATGTGTAGTACTATGTGCAGGCTACTATG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATG
26787995 TGAACCGAGT
Statistics
Matches: 218, Mismatches: 55, Indels: 27
0.73 0.18 0.09
Matches are distributed among these distances:
49 14 0.06
50 65 0.30
51 126 0.58
52 10 0.05
53 3 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (51 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCTGAATAGCATAA
Found at i:26787874 original size:101 final size:101
Alignment explanation
Indices: 26787759--26787992 Score: 260
Period size: 101 Copynumber: 2.3 Consensus size: 101
26787749 ATAGCTTCAA
* * *
26787759 TCACGTGTGTAGTACTATGTGCAGGCTACTA-CGTATATCGGATGAAAAT-GGTCATGTGTGTAG
1 TCACATGTGTAGTACTATGTGCAGGCTACTAGCGTA-AT-GGAT-AAAATCGATCACGTGTGTAG
* * * *
26787822 TATTATGTGTAGGCTACTACGTGTACCGGAATG-ATA-GG
63 TACTATGTGCAGGCTACTACGTGTACCAG-ATGAAAATGG
* * * ***
26787860 TCGCATGTGCAGTACTATGTGCAGGCTACTATGCGTACTGGATAGCTTCGATCACGTGTGTAGTA
1 TCACATGTGTAGTACTATGTGCAGGCTACTA-GCGTAATGGATAAAATCGATCACGTGTGTAGTA
*
26787925 CTATGTGCAGGCTACTACGTGTATCAGATGAAAATGG
65 CTATGTGCAGGCTACTACGTGTACCAGATGAAAATGG
*
26787962 TTACATGTGTAGTACTATGTGCAGGCTACTA
1 TCACATGTGTAGTACTATGTGCAGGCTACTA
26787993 TGTGAACCGA
Statistics
Matches: 111, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
100 5 0.05
101 71 0.64
102 31 0.28
103 4 0.04
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (101 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTAGCGTAATGGATAAAATCGATCACGTGTGTAGTAC
TATGTGCAGGCTACTACGTGTACCAGATGAAAATGG
Found at i:26787932 original size:152 final size:152
Alignment explanation
Indices: 26787656--26788001 Score: 548
Period size: 152 Copynumber: 2.3 Consensus size: 152
26787646 GAAGTTGCTA
* * * *
26787656 GGTCACGTTTGTAGTACTATGCGCAGGCTACTACGTGTACTGGAATGATAGGTCGCATGTATAGT
1 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTACAGT
26787721 ACTATGTGCAGGCTACTATGCGTACTGAATAGCTTCAATCACGTGTGTAGTACTATGTGCAGGCT
66 ACTATGTGCAGGCTACTATGCGTACTGAATAGCTTCAATCACGTGTGTAGTACTATGTGCAGGCT
*
26787786 ACTACGTATATCGGATGAAAAT
131 ACTACGTATATCAGATGAAAAT
* * * *
26787808 GGTCATGTGTGTAGTATTATGTGTAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGCAGT
1 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTACAGT
* *
26787873 ACTATGTGCAGGCTACTATGCGTACTGGATAGCTTCGATCACGTGTGTAGTACTATGTGCAGGCT
66 ACTATGTGCAGGCTACTATGCGTACTGAATAGCTTCAATCACGTGTGTAGTACTATGTGCAGGCT
*
26787938 ACTACGTGTATCAGATGAAAAT
131 ACTACGTATATCAGATGAAAAT
* * * *
26787960 GGTTACATGTGTAGTACTATGTGCAGGCTACTATGTGAACCG
1 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
26788002 AGTATCATTT
Statistics
Matches: 175, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
152 175 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (152 bp):
GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTACAGT
ACTATGTGCAGGCTACTATGCGTACTGAATAGCTTCAATCACGTGTGTAGTACTATGTGCAGGCT
ACTACGTATATCAGATGAAAAT
Found at i:26787996 original size:26 final size:26
Alignment explanation
Indices: 26787916--26787996 Score: 69
Period size: 26 Copynumber: 3.2 Consensus size: 26
26787906 TTCGATCACG
26787916 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* * *** *
26787942 CGTGTA-T-CAGATGAAAATGGTTAC-A
1 TGTGTAGTAC-TATGTGCA-GGCTACTA
26787967 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
26787993 TGTG
1 TGTG
26787997 AACCGAGTAT
Statistics
Matches: 38, Mismatches: 12, Indels: 10
0.63 0.20 0.17
Matches are distributed among these distances:
24 1 0.03
25 16 0.42
26 20 0.53
27 1 0.03
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:26790147 original size:29 final size:29
Alignment explanation
Indices: 26790105--26790168 Score: 119
Period size: 29 Copynumber: 2.2 Consensus size: 29
26790095 ATCGCTATCC
*
26790105 ATAATGGAAAAGAACATTTGCCCATTTAT
1 ATAACGGAAAAGAACATTTGCCCATTTAT
26790134 ATAACGGAAAAGAACATTTGCCCATTTAT
1 ATAACGGAAAAGAACATTTGCCCATTTAT
26790163 ATAACG
1 ATAACG
26790169 AATCGTATGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (29 bp):
ATAACGGAAAAGAACATTTGCCCATTTAT
Found at i:26791091 original size:19 final size:19
Alignment explanation
Indices: 26791063--26791099 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
26791053 AATTGAATTA
26791063 ATTTTTATAATTT-TTTTT
1 ATTTTTATAATTTATTTTT
26791081 ATTTTTGATAATTTATTTT
1 ATTTTT-ATAATTTATTTT
26791100 CTTTGAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 7 0.41
20 4 0.24
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (19 bp):
ATTTTTATAATTTATTTTT
Found at i:26791353 original size:24 final size:24
Alignment explanation
Indices: 26791306--26791380 Score: 80
Period size: 24 Copynumber: 3.0 Consensus size: 24
26791296 AGATAACATT
26791306 AAATTTTAAATTTTTGTTTATATTTTTA
1 AAATTTTAAA--TTT-TTT-TATTTTTA
**
26791334 AAATATTTTTA-TTTTTTATTTTTA
1 AAAT-TTTAAATTTTTTTATTTTTA
26791358 AAATTTTAAATTTTTTTATTTTT
1 AAATTTTAAATTTTTTTATTTTT
26791381 TTCCAAAAGT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
23 4 0.10
24 24 0.59
25 3 0.07
26 2 0.05
28 4 0.10
29 4 0.10
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.68
Consensus pattern (24 bp):
AAATTTTAAATTTTTTTATTTTTA
Found at i:26791421 original size:22 final size:23
Alignment explanation
Indices: 26791395--26791438 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
26791385 AAAAGTTTTA
26791395 TTTAAAAAAATAT-ATTTTTAAT
1 TTTAAAAAAATATAATTTTTAAT
**
26791417 TTTAAAAATTTATAATTTTTAA
1 TTTAAAAAAATATAATTTTTAA
26791439 AATTTTTATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TTTAAAAAAATATAATTTTTAAT
Found at i:26791427 original size:16 final size:16
Alignment explanation
Indices: 26791408--26791446 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
26791398 AAAAAAATAT
26791408 ATTTTTAATTTTAAAA
1 ATTTTTAATTTTAAAA
* *
26791424 ATTTATAATTTTTAAA
1 ATTTTTAATTTTAAAA
26791440 ATTTTTA
1 ATTTTTA
26791447 TGTTTTTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
ATTTTTAATTTTAAAA
Found at i:26794608 original size:122 final size:121
Alignment explanation
Indices: 26794482--26794736 Score: 431
Period size: 122 Copynumber: 2.1 Consensus size: 121
26794472 CAAACTTTAG
*
26794482 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTA
* *
26794547 TTATATATTATGATTTTAGTAAATTAATA-TAAGAATATATTTAATATTAAAAATTTT
66 TTATAAATTATGATTTTAGTAAATTAATATTAAG-A-ATATCTAATATTAAAAATTTT
*
26794604 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTCTAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTA
* *
26794669 TTATAAATTATGATTTTAGTAATTTAATATTAAGAATATCTAATATTAAGAATTTT
66 TTATAAATTATGATTTTAGTAAATTAATATTAAGAATATCTAATATTAAAAATTTT
26794725 ATTAAATTATAT
1 ATTAAATTATAT
26794737 TTAATAATAA
Statistics
Matches: 126, Mismatches: 6, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
121 31 0.25
122 91 0.72
123 4 0.03
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.52
Consensus pattern (121 bp):
ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTA
TTATAAATTATGATTTTAGTAAATTAATATTAAGAATATCTAATATTAAAAATTTT
Found at i:26794992 original size:16 final size:16
Alignment explanation
Indices: 26794965--26795010 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
26794955 TTGATTTGCT
*
26794965 ATTACGCCTCTATTCC
1 ATTAAGCCTCTATTCC
*
26794981 ATTAAGCTTCTATTCC
1 ATTAAGCCTCTATTCC
*
26794997 ATTATGCCTCTATT
1 ATTAAGCCTCTATT
26795011 TCAATACAGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.22, C:0.28, G:0.07, T:0.43
Consensus pattern (16 bp):
ATTAAGCCTCTATTCC
Found at i:26795033 original size:20 final size:20
Alignment explanation
Indices: 26795008--26795049 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
26794998 TTATGCCTCT
26795008 ATTTCAATACAGCGAAGCAA
1 ATTTCAATACAGCGAAGCAA
26795028 ATTTCAATACAGCGAAGCAA
1 ATTTCAATACAGCGAAGCAA
26795048 AT
1 AT
26795050 GTGCCATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.21
Consensus pattern (20 bp):
ATTTCAATACAGCGAAGCAA
Found at i:26802700 original size:22 final size:22
Alignment explanation
Indices: 26802672--26802719 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
26802662 ACAAATCCTA
26802672 TCTCAATTTCCTTCCAAAATCC
1 TCTCAATTTCCTTCCAAAATCC
*
26802694 TCTCAATTTCCTTCCAAAATTC
1 TCTCAATTTCCTTCCAAAATCC
26802716 TCTC
1 TCTC
26802720 GAACTCTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.25, C:0.35, G:0.00, T:0.40
Consensus pattern (22 bp):
TCTCAATTTCCTTCCAAAATCC
Found at i:26802729 original size:30 final size:30
Alignment explanation
Indices: 26802693--26802751 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
26802683 TTCCAAAATC
*
26802693 CTCTCAATTTCCTTCCAAAATTCTCTCGAA
1 CTCTCAATTTCCTTCCAAAATCCTCTCGAA
26802723 CTCTCAATTTCCTTCCAAAATCCTCTCGA
1 CTCTCAATTTCCTTCCAAAATCCTCTCGA
26802752 TTTCCTTCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.36, G:0.03, T:0.36
Consensus pattern (30 bp):
CTCTCAATTTCCTTCCAAAATCCTCTCGAA
Found at i:26802754 original size:22 final size:22
Alignment explanation
Indices: 26802723--26802773 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
26802713 TTCTCTCGAA
26802723 CTCTCAATTTCCTTCCAAAATC
1 CTCTCAATTTCCTTCCAAAATC
*
26802745 CTCTCGATTTCCTTCCAAAAAT-
1 CTCTCAATTTCCTTCC-AAAATC
26802767 CTCTCAA
1 CTCTCAA
26802774 ATCCATATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 21 0.81
23 5 0.19
ACGTcount: A:0.27, C:0.35, G:0.02, T:0.35
Consensus pattern (22 bp):
CTCTCAATTTCCTTCCAAAATC
Found at i:26802755 original size:52 final size:52
Alignment explanation
Indices: 26802672--26802771 Score: 182
Period size: 52 Copynumber: 1.9 Consensus size: 52
26802662 ACAAATCCTA
*
26802672 TCTCAATTTCCTTCCAAAATCCTCTCAATTTCCTTCCAAAATTCTCTCGAAC
1 TCTCAATTTCCTTCCAAAATCCTCTCAATTTCCTTCCAAAAATCTCTCGAAC
*
26802724 TCTCAATTTCCTTCCAAAATCCTCTCGATTTCCTTCCAAAAATCTCTC
1 TCTCAATTTCCTTCCAAAATCCTCTCAATTTCCTTCCAAAAATCTCTC
26802772 AAATCCATAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.26, C:0.35, G:0.02, T:0.37
Consensus pattern (52 bp):
TCTCAATTTCCTTCCAAAATCCTCTCAATTTCCTTCCAAAAATCTCTCGAAC
Found at i:26802842 original size:31 final size:31
Alignment explanation
Indices: 26802807--26802873 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
26802797 CCTCAATTTC
26802807 ATTTTTTTAAAATAATTTTAAATTTTTTAAT
1 ATTTTTTTAAAATAATTTTAAATTTTTTAAT
*
26802838 ATTTTTTTAAAATAATTTTAAATTTTTTTAT
1 ATTTTTTTAAAATAATTTTAAATTTTTTAAT
26802869 ATTTT
1 ATTTT
26802874 CATCAATGGC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (31 bp):
ATTTTTTTAAAATAATTTTAAATTTTTTAAT
Found at i:26805220 original size:30 final size:30
Alignment explanation
Indices: 26805186--26805606 Score: 475
Period size: 30 Copynumber: 13.8 Consensus size: 30
26805176 TAATAAAAAT
*
26805186 CCTAATTTAATTAAAAACCCTAAACACTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
26805216 CCTAATTTAATT---AA----AAACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
*
26805239 CCTAATTTAATTAAAAACCCTAAACCTTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
*
26805269 CCCTGTCCTAATTTAATTAAAAACCATAAACCCTAA
1 ------CCTAATTTAATTAAAAACCCTAAACCCTAA
26805305 CCTAATTTAATTAAAAACCCT-AACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
*
26805334 CCTAATTTACTTAAAAACCCTAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
*
26805364 CCTAATTTAATTAAAAACCTTAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
*
26805394 CCTAATTTAATTAAAAACCCTAAACCGTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
* *
26805424 CTTAATTTAAGTAAAAACCCT-AACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
*
26805453 CTTAATTTAATTAAAAACCCTAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
* * **
26805483 CCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAA
1 -CCTAA---T---TTAA-TT-A--AAAACCCTAAA-CCCTAA
26805525 CCTAATTTAATTAAAAACCCT-AACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
*
26805554 CCTAATTTAATTAATAACCCTAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
*
26805584 CTTAATTTAATTAAAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAA
26805607 CCATTAACAA
Statistics
Matches: 338, Mismatches: 25, Indels: 56
0.81 0.06 0.13
Matches are distributed among these distances:
23 20 0.06
26 2 0.01
27 2 0.01
29 81 0.24
30 162 0.48
31 10 0.03
33 1 0.00
34 3 0.01
35 3 0.01
36 28 0.08
37 3 0.01
38 3 0.01
39 1 0.00
41 13 0.04
42 6 0.02
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (30 bp):
CCTAATTTAATTAAAAACCCTAAACCCTAA
Found at i:26805238 original size:23 final size:23
Alignment explanation
Indices: 26805207--26805261 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
26805197 TAAAAACCCT
*
26805207 AAACACTAACCTAATTTAATTAA
1 AAACCCTAACCTAATTTAATTAA
26805230 AAACCCTAACCTAATTTAATTAA
1 AAACCCTAACCTAATTTAATTAA
26805253 AAACCCTAA
1 AAACCCTAA
26805262 ACCTTAACCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (23 bp):
AAACCCTAACCTAATTTAATTAA
Found at i:26805360 original size:89 final size:88
Alignment explanation
Indices: 26805186--26805608 Score: 501
Period size: 89 Copynumber: 4.6 Consensus size: 88
26805176 TAATAAAAAT
* * **
26805186 CCTAATTTAATTAAAAACCCTAAACACTAACCTAATTTAATTAAAAACCCTAA-CCTAATTTAA-
1 CCTAATTTAATTAAAAACCATAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAAT
* * **
26805249 TTAA-AAACCCTAAACCTTAACCCTGT
66 TTAATTAA----AAACCCTAACCCTAA
26805275 CCTAATTTAATTAAAAACCATAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAAT
1 CCTAATTTAATTAAAAACCATAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAAT
*
26805340 TTACTTAAAAACCCTAAACCCTAA
66 TTAATTAAAAACCCT-AACCCTAA
* * *
26805364 CCTAATTTAATTAAAAACCTTAAACCCTAACCTAATTTAATTAAAAACCCTAAACCGTAACTTAA
1 CCTAATTTAATTAAAAACCATAAACCCTAACCTAATTTAATTAAAAACCCT-AACCCTAACCTAA
*
26805429 TTTAAGTAAAAACCCTAACCCTAA
65 TTTAATTAAAAACCCTAACCCTAA
*
26805453 CTTAATTTAATTAAAAACCCTAAACCCTAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAA
1 CCTAATTTAATTAAAAA-CC---A---T-A----AACCCTAACCTAATTTAATTAAAAACCCT-A
26805518 ACCCTAACCTAATTTAATTAAAAACCCTAACCCTAA
53 ACCCTAACCTAATTTAATTAAAAACCCTAACCCTAA
* * *
26805554 CCTAATTTAATTAATAACCCTAAACCCTAACTTAATTTAATTAAAAACCCTAACC
1 CCTAATTTAATTAAAAACCATAAACCCTAACCTAATTTAATTAAAAACCCTAACC
26805609 ATTAACAAAA
Statistics
Matches: 294, Mismatches: 23, Indels: 35
0.84 0.07 0.10
Matches are distributed among these distances:
88 10 0.03
89 159 0.54
90 35 0.12
91 3 0.01
92 2 0.01
93 1 0.00
94 1 0.00
96 1 0.00
97 1 0.00
100 2 0.01
101 79 0.27
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (88 bp):
CCTAATTTAATTAAAAACCATAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAAT
TTAATTAAAAACCCTAACCCTAA
Found at i:26805492 original size:12 final size:13
Alignment explanation
Indices: 26805468--26805496 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
26805458 TTTAATTAAA
26805468 AACCCTAAACCCT
1 AACCCTAAACCCT
26805481 AACCCT-AACCCT
1 AACCCTAAACCCT
26805493 AACC
1 AACC
26805497 TAATTTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.38, C:0.48, G:0.00, T:0.14
Consensus pattern (13 bp):
AACCCTAAACCCT
Found at i:26805501 original size:42 final size:42
Alignment explanation
Indices: 26805439--26805526 Score: 167
Period size: 42 Copynumber: 2.1 Consensus size: 42
26805429 TTTAAGTAAA
*
26805439 AACCCTAACCCTAACTTAATTTAATTAAAAACCCTAAACCCT
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCT
26805481 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCT
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCT
26805523 AACC
1 AACC
26805527 TAATTTAATT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.24
Consensus pattern (42 bp):
AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCT
Found at i:26805511 original size:131 final size:132
Alignment explanation
Indices: 26805349--26805606 Score: 448
Period size: 131 Copynumber: 2.0 Consensus size: 132
26805339 TTTACTTAAA
*
26805349 AACCCTAAACCCTAACCTAATTTAATTAAAAACCTTAAACCCTAACCTAATTTAATTAAAAACCC
1 AACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCC
* *
26805414 TAAACCGTAACTTAATTTAAGTAAAAACCCT-AACCCTAACTTAATTTAATTAAAAACCCTAAAC
66 T-AACCCTAACCTAATTTAAGTAAAAACCCTAAACCCTAACTTAATTTAATTAAAAACCCTAAAC
26805478 CCT
130 CCT
26805481 AACCCT-AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCC
1 AACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCC
* *
26805545 TAACCCTAACCTAATTTAATTAATAACCCTAAACCCTAACTTAATTTAATTAAAAACCCTAA
66 TAACCCTAACCTAATTTAAGTAAAAACCCTAAACCCTAACTTAATTTAATTAAAAACCCTAA
26805607 CCATTAACAA
Statistics
Matches: 120, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
130 25 0.21
131 89 0.74
132 6 0.05
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (132 bp):
AACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCC
TAACCCTAACCTAATTTAAGTAAAAACCCTAAACCCTAACTTAATTTAATTAAAAACCCTAAACC
CT
Found at i:26805514 original size:101 final size:101
Alignment explanation
Indices: 26805386--26805584 Score: 353
Period size: 101 Copynumber: 2.0 Consensus size: 101
26805376 AAAAACCTTA
* *
26805386 AACCCTAACCTAATTTAATTAAAAACCCTAAACCGTAACTTAATTTAAGTAAAAACCCTAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAAGTAAAAACCCTAACCCT
*
26805451 AACTTAATTTAATTAAAAACCCTAAACCCTAACCCT
66 AACCTAATTTAATTAAAAACCCTAAACCCTAACCCT
*
26805487 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAAGTAAAAACCCTAACCCT
*
26805552 AACCTAATTTAATTAATAACCCTAAACCCTAAC
66 AACCTAATTTAATTAAAAACCCTAAACCCTAAC
26805585 TTAATTTAAT
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 93 1.00
ACGTcount: A:0.45, C:0.28, G:0.01, T:0.27
Consensus pattern (101 bp):
AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAAGTAAAAACCCTAACCCT
AACCTAATTTAATTAAAAACCCTAAACCCTAACCCT
Found at i:26805603 original size:59 final size:59
Alignment explanation
Indices: 26805186--26805608 Score: 493
Period size: 59 Copynumber: 6.9 Consensus size: 59
26805176 TAATAAAAAT
*
26805186 CCTAATTTAATTAAAAACCCTAAACACTAACCTAATTTAATT--AAA----AACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAA
* *
26805239 CCTAATTTAATTAAAAACCCTAAACCTTAACCCTGTCCTAATTTAATTAAAAACCATAAACCCTA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA------CCTAATTTAATTAAAAACCCT-AACCCTA
26805304 A
59 A
*
26805305 CCTAATTTAATTAAAAACCCT-AACCCTAACCTAATTTACTTAAAAACCCTAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCT-AACCCTAA
* *
26805364 CCTAATTTAATTAAAAACCTTAAACCCTAACCTAATTTAATTAAAAACCCTAAACCGTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCT-AACCCTAA
* * *
26805424 CTTAATTTAAGTAAAAACCCT-AACCCTAACTTAATTTAATTAAAAACCCTAAACCCTAACCCTA
1 CCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAA-T--------TAAA----AACCCTA
26805488 ACCCTAA
53 ACCCTAA
26805495 CCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAA
* *
26805554 CCTAATTTAATTAATAACCCTAAACCCTAACTTAATTTAATTAAAAACCCTAACC
1 CCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACC
26805609 ATTAACAAAA
Statistics
Matches: 324, Mismatches: 18, Indels: 50
0.83 0.05 0.13
Matches are distributed among these distances:
53 28 0.09
59 144 0.44
60 55 0.17
61 3 0.01
63 4 0.01
65 7 0.02
66 29 0.09
68 4 0.01
71 27 0.08
72 23 0.07
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (59 bp):
CCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAA
Found at i:26813841 original size:15 final size:15
Alignment explanation
Indices: 26813821--26813852 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
26813811 AAAAGAAAAT
26813821 TATCATTAATCAAAG
1 TATCATTAATCAAAG
26813836 TATCATTAATCAAAG
1 TATCATTAATCAAAG
26813851 TA
1 TA
26813853 GCTCTACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.34
Consensus pattern (15 bp):
TATCATTAATCAAAG
Found at i:26816359 original size:41 final size:41
Alignment explanation
Indices: 26816284--26816512 Score: 289
Period size: 41 Copynumber: 5.6 Consensus size: 41
26816274 TTCTGAGCTT
* * * *
26816284 TCAGGGTTTTAGCGGCGTTTTTTGAGAAAGCGCCGCTAGTGC
1 TCAGGGCTTTAGCGGCG-TTTTTGGGAAAGCGCCGCTAATGA
*
26816326 TCAGGGCTTTACCGGCGTTTTTGGGAAAGCGCCGCTAATGA
1 TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGA
* * * *
26816367 TTAGGCCTTTAGCGGCGTGTTTGGAAAAGCGCCGCTAATGA
1 TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGA
* *
26816408 TCAGAGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGA
1 TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGA
* * * *
26816449 TCAGAGATTTAGCGGCGTTTTTGAGTAAGCGCCGCTAAT-A
1 TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGA
*
26816489 CTCAGGGCTTTAGTGGCGTTTTTG
1 -TCAGGGCTTTAGCGGCGTTTTTG
26816513 AAGTAGAGCC
Statistics
Matches: 165, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
40 1 0.01
41 149 0.90
42 15 0.09
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.30
Consensus pattern (41 bp):
TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGA
Found at i:26819693 original size:32 final size:33
Alignment explanation
Indices: 26819657--26819721 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 33
26819647 CTGGAATTTG
*
26819657 TTTATTTGTAATTTGTTAT-TTTTCTGTGTTTT
1 TTTATTTGTAATTTGTTATGTTTTCTGGGTTTT
26819689 TTTATTTGTAATTTGTTATGTTTTCTGGGTTTT
1 TTTATTTGTAATTTGTTATGTTTTCTGGGTTTT
26819722 GCTTATAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 19 0.61
33 12 0.39
ACGTcount: A:0.12, C:0.03, G:0.15, T:0.69
Consensus pattern (33 bp):
TTTATTTGTAATTTGTTATGTTTTCTGGGTTTT
Found at i:26820953 original size:5 final size:5
Alignment explanation
Indices: 26820945--26820971 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
26820935 ATATTTTACC
26820945 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
26820972 AACAAGAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:26821883 original size:43 final size:43
Alignment explanation
Indices: 26821834--26821980 Score: 206
Period size: 43 Copynumber: 3.4 Consensus size: 43
26821824 CGGAAAAAAT
* * * *
26821834 GCCGCTAAAGGCCAAGACTTTTAGCGGCGCTTTTCCCACAAAT
1 GCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCACAAAC
* *
26821877 GTCGCTAAAGACCAGGACCTTTAGCAGCGCTTTTCCCACAAAC
1 GCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCACAAAC
* *
26821920 ACCGCTGAAA-ATCAGGACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCT-AAAGACCAGGACCTTTAGCGGCGCTTTTCCCACAAAC
26821963 GCCGCTAAAGACCAGGAC
1 GCCGCTAAAGACCAGGAC
26821981 TCCCCAAAAA
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
42 3 0.03
43 84 0.93
44 3 0.03
ACGTcount: A:0.28, C:0.32, G:0.20, T:0.20
Consensus pattern (43 bp):
GCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:26822139 original size:41 final size:42
Alignment explanation
Indices: 26822055--26822141 Score: 106
Period size: 41 Copynumber: 2.1 Consensus size: 42
26822045 GAACAAGACC
* * *
26822055 TTTAGCGACACTTTCTCCACAAACGCCGCTATAACATTGACT
1 TTTAGCGACACTTTCTCCACAAACGCCACTAAAACATTAACT
* *
26822097 TTTAGCGACGCTTT-TTCACAAACGCCACTAAAAGCA-TAACT
1 TTTAGCGACACTTTCTCCACAAACGCCACTAAAA-CATTAACT
26822138 TTTA
1 TTTA
26822142 TAAAAAATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
41 24 0.62
42 15 0.38
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.30
Consensus pattern (42 bp):
TTTAGCGACACTTTCTCCACAAACGCCACTAAAACATTAACT
Found at i:26822765 original size:40 final size:38
Alignment explanation
Indices: 26822721--26822811 Score: 101
Period size: 39 Copynumber: 2.3 Consensus size: 38
26822711 TGCGACATTT
26822721 TTAGCGGCGTTTGGATAAAAAACGCCACTAAAAATAAGCA
1 TTAGCGGCGTTT--ATAAAAAACGCCACTAAAAATAAGCA
* ** * *
26822761 TTAGCGGCGCTTTTTGGAAAACGCCGCTAAAGATAAGCA
1 TTAGCGGCG-TTTATAAAAAACGCCACTAAAAATAAGCA
*
26822800 TTACCGGCGTTT
1 TTAGCGGCGTTT
26822812 TTCAAAAATC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
38 3 0.07
39 29 0.66
40 9 0.20
41 3 0.07
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (38 bp):
TTAGCGGCGTTTATAAAAAACGCCACTAAAAATAAGCA
Found at i:26822791 original size:39 final size:38
Alignment explanation
Indices: 26822738--26822832 Score: 118
Period size: 39 Copynumber: 2.4 Consensus size: 38
26822728 CGTTTGGATA
* * *
26822738 AAAAACGCCACTAAAAATAAGCATTAGCGGCGCTTTTTG
1 AAAAACGCCGCTAAAAATAAGCATTACCGGCG-TTTTTC
* *
26822777 GAAAACGCCGCTAAAGATAAGCATTACCGGCGTTTTTC
1 AAAAACGCCGCTAAAAATAAGCATTACCGGCGTTTTTC
*
26822815 AAAAATCGCCGCAAAAAA
1 AAAAA-CGCCGCTAAAAA
26822833 CCTAAGCCAA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
38 9 0.19
39 38 0.81
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (38 bp):
AAAAACGCCGCTAAAAATAAGCATTACCGGCGTTTTTC
Found at i:26822925 original size:41 final size:41
Alignment explanation
Indices: 26822868--26823192 Score: 490
Period size: 41 Copynumber: 7.9 Consensus size: 41
26822858 GAGTTTTTGA
* *
26822868 GGCCTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAATTCTCG
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCG
*
26822909 GGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCG
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCG
* * *
26822950 GGCTTTTAGCGGCGTTTGTGAAGAAGCGCCGCTAATGCTCG
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCG
* *
26822991 GGACTTTAGCGGCG-TTTTGAAAGAAGCGCCTCTAATGCTCG
1 GGCCTTTAGCGGCGTTTTTGAAA-AAGCGCCGCTAATGCTCG
* *
26823032 GGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATACTCG
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCG
* *
26823073 GGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATACTCG
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCG
* * *
26823114 GGCCTTTAGCGGTGTTTTTTAAAAAGCGCCGCTAATGCTTG
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCG
*
26823155 GGCCTTTAGCGGTGTTTTTGAAAAAGCGCCGCTAATGC
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
26823193 CCGCTTTTGA
Statistics
Matches: 261, Mismatches: 21, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
40 6 0.02
41 248 0.95
42 7 0.03
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (41 bp):
GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCG
Found at i:26823574 original size:14 final size:14
Alignment explanation
Indices: 26823557--26823593 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
26823547 GGGTTTAATA
26823557 TATATGGTTTAGGG
1 TATATGGTTTAGGG
*
26823571 TATATGATTTAGGG
1 TATATGGTTTAGGG
*
26823585 TACATGGTT
1 TATATGGTT
26823594 AATTTAGGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.24, C:0.03, G:0.30, T:0.43
Consensus pattern (14 bp):
TATATGGTTTAGGG
Found at i:26823914 original size:7 final size:7
Alignment explanation
Indices: 26823891--26823935 Score: 63
Period size: 7 Copynumber: 6.4 Consensus size: 7
26823881 TAAATAAGAT
26823891 TTAGGGG
1 TTAGGGG
**
26823898 TTAGTAG
1 TTAGGGG
26823905 TTAGGGG
1 TTAGGGG
26823912 TTAGGGG
1 TTAGGGG
*
26823919 TTAAGGG
1 TTAGGGG
26823926 TTAGGGG
1 TTAGGGG
26823933 TTA
1 TTA
26823936 AAGGTTGGAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.20, C:0.00, G:0.47, T:0.33
Consensus pattern (7 bp):
TTAGGGG
Found at i:26823936 original size:14 final size:14
Alignment explanation
Indices: 26823904--26823941 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
26823894 GGGGTTAGTA
*
26823904 GTTAGGGGTTAGGG
1 GTTAAGGGTTAGGG
26823918 GTTAAGGGTTAGGG
1 GTTAAGGGTTAGGG
*
26823932 GTTAAAGGTT
1 GTTAAGGGTT
26823942 GGAGATTAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.21, C:0.00, G:0.47, T:0.32
Consensus pattern (14 bp):
GTTAAGGGTTAGGG
Found at i:26828234 original size:43 final size:43
Alignment explanation
Indices: 26828174--26828264 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
26828164 CTTTGAGTTC
* * * *
26828174 ATTA-CAAGATTTCCTTGATTAAGTAAATGTATTATATCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
*
26828216 ATTACCAAGATTTACTTGATTAAGAAAATGCATTGTATATTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
26828259 ATTACC
1 ATTACC
26828265 TTGCATATGT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 4 0.09
43 39 0.91
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.44
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
Found at i:26828614 original size:43 final size:44
Alignment explanation
Indices: 26828540--26828765 Score: 213
Period size: 42 Copynumber: 5.3 Consensus size: 44
26828530 AAGATATATT
* ** *
26828540 TTTAGCGGCGGTTGT-GTTAAAAGTGCTGCTAAAGGTCTAT-TC
1 TTTAGCGGCGTTTGTGGGAAAAAGCGCTGCTAAAGGTCTATGTC
* * *
26828582 TATAGCGGCGTTTGTGGGAAAAAGCGCTGCTAAAGCT-TAATATC
1 TTTAGCGGCGTTTGTGGGAAAAAGCGCTGCTAAAGGTCT-ATGTC
* * *
26828626 TTTAGCGGCGTTTGT-GAAAAAAGCGCTGTTAAAGGTCT-TGGAC
1 TTTAGCGGCGTTTGTGGGAAAAAGCGCTGCTAAAGGTCTAT-GTC
* *
26828669 TTTAGCGGCGTTTGTGGG--GAAGCGCCGCTAAAGGTCT-TGGTC
1 TTTAGCGGCGTTTGTGGGAAAAAGCGCTGCTAAAGGTCTAT-GTC
* *
26828711 TTTAGCGGCGTTTGTGGGGAAGAGC-C-GCTAAAGGTC-ATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAAGCGCTGCTAAAGGTCTAT-GTC
26828753 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
26828766 ATTTATAAAA
Statistics
Matches: 156, Mismatches: 19, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
42 81 0.52
43 54 0.35
44 21 0.13
ACGTcount: A:0.21, C:0.16, G:0.32, T:0.31
Consensus pattern (44 bp):
TTTAGCGGCGTTTGTGGGAAAAAGCGCTGCTAAAGGTCTATGTC
Found at i:26831830 original size:95 final size:95
Alignment explanation
Indices: 26831653--26831831 Score: 216
Period size: 95 Copynumber: 1.9 Consensus size: 95
26831643 GTTCACCAGG
* * * * **
26831653 AAACATGAGGTTATATTGTGTAAGACCATAACTCGACTATGGCAGCTTATGGAGTCTGTCGGAAC
1 AAACATGAGGTTATATTATGTAAGACCATAACTCGACTATGACAACATATGGAACCTGTCGGAAC
* *
26831718 ATTAAACATAGGGTAGTCCGCTTGGACGTT
66 AATAAACATAGGATAGTCCGCTTGGACGTT
* * * * * *
26831748 AAACATGGGGTTATATTATGTAAGACCATAGCTTGGCTATGACAACATATGGAACCTGTTGGGAC
1 AAACATGAGGTTATATTATGTAAGACCATAACTCGACTATGACAACATATGGAACCTGTCGGAAC
26831813 AATAAACAT-GAGATAGTCC
66 AATAAACATAG-GATAGTCC
26831832 ACTGAGATAA
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
94 1 0.01
95 68 0.99
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.27
Consensus pattern (95 bp):
AAACATGAGGTTATATTATGTAAGACCATAACTCGACTATGACAACATATGGAACCTGTCGGAAC
AATAAACATAGGATAGTCCGCTTGGACGTT
Found at i:26834098 original size:51 final size:51
Alignment explanation
Indices: 26833975--26834105 Score: 146
Period size: 50 Copynumber: 2.6 Consensus size: 51
26833965 GAAAGTGATG
* *
26833975 GTCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTATCGGAATGATAGTTC
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTATC-G-ATGATAGTTC
* * *
26834028 G-CA--TGTATAGTACTATGTGCAGGCTACTATGCGTA-C-CTGATAGTTTC
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTATCGATGATAG-TTC
26834075 GATCACGTGTGTAGTACTATGTGCAGGCTAC
1 G-TCACGTGTGTAGTACTATGTGCAGGCTAC
26834106 GTGTATCGAA
Statistics
Matches: 67, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
46 6 0.09
47 4 0.06
49 3 0.04
50 28 0.42
51 23 0.34
52 2 0.03
53 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (51 bp):
GTCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTATCGATGATAGTTC
Found at i:26835779 original size:12 final size:12
Alignment explanation
Indices: 26835762--26835795 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
26835752 TAGTTTCTCG
*
26835762 AAAAAAAATTCA
1 AAAAAAAATTAA
26835774 AAAAAAAATTAA
1 AAAAAAAATTAA
26835786 AAAAAAAATT
1 AAAAAAAATT
26835796 TTGGTTTCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (12 bp):
AAAAAAAATTAA
Found at i:26835855 original size:12 final size:12
Alignment explanation
Indices: 26835838--26835883 Score: 56
Period size: 12 Copynumber: 3.7 Consensus size: 12
26835828 TCAAGTTGTG
26835838 AAAAAAAATTTT
1 AAAAAAAATTTT
*
26835850 AAAAAAAATTGTGA
1 AAAAAAAATT-T-T
*
26835864 AAAAAAAATTGT
1 AAAAAAAATTTT
26835876 AAAAAAAA
1 AAAAAAAA
26835884 GAGAGCTAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
12 18 0.62
13 1 0.03
14 10 0.34
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.22
Consensus pattern (12 bp):
AAAAAAAATTTT
Found at i:26835857 original size:14 final size:13
Alignment explanation
Indices: 26835833--26835883 Score: 68
Period size: 14 Copynumber: 3.9 Consensus size: 13
26835823 GGATATCAAG
*
26835833 TTGTGAAAAAAAA
1 TTGTAAAAAAAAA
*
26835846 TT-TTAAAAAAAA
1 TTGTAAAAAAAAA
26835858 TTGTGAAAAAAAAA
1 TTGT-AAAAAAAAA
26835872 TTGTAAAAAAAA
1 TTGTAAAAAAAA
26835884 GAGAGCTAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
12 11 0.32
13 11 0.32
14 12 0.35
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.25
Consensus pattern (13 bp):
TTGTAAAAAAAAA
Found at i:26835861 original size:25 final size:26
Alignment explanation
Indices: 26835833--26835883 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
26835823 GGATATCAAG
*
26835833 TTGTG-AAAAAAAATTTTAAAAAAAA
1 TTGTGAAAAAAAAATTGTAAAAAAAA
26835858 TTGTGAAAAAAAAATTGTAAAAAAAA
1 TTGTGAAAAAAAAATTGTAAAAAAAA
26835884 GAGAGCTAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.25
Consensus pattern (26 bp):
TTGTGAAAAAAAAATTGTAAAAAAAA
Found at i:26840048 original size:45 final size:45
Alignment explanation
Indices: 26839984--26840072 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
26839974 TGTGAACTGA
* * *
26839984 ACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCGG
1 ACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCCACCGG
26840029 ACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCCACCG
1 ACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCCACCG
26840073 AGTATCTGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.33
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCCACCGG
Found at i:26845148 original size:65 final size:65
Alignment explanation
Indices: 26845044--26845191 Score: 226
Period size: 65 Copynumber: 2.3 Consensus size: 65
26845034 GATACACGGA
* * *
26845044 TCTCCAACACACCAAATGACTCATAGAGTCAAACATATCCC-AAAGTTGAAACATAGAGCTAACA
1 TCTCCAACACACCAAATAACTCATAGAGTCAAACATATCCCAAAAG-TGAAACATAAAACTAACA
26845108 C
65 C
* * *
26845109 TCTCCAACACACTAAATAACTCATAGAGTCGAACATATCCCAAAAGTGAAGCATAAAACTAACAC
1 TCTCCAACACACCAAATAACTCATAGAGTCAAACATATCCCAAAAGTGAAACATAAAACTAACAC
26845174 TCTCCAACACACCAAATA
1 TCTCCAACACACCAAATA
26845192 TGTCCCATTG
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
65 71 0.95
66 4 0.05
ACGTcount: A:0.45, C:0.28, G:0.09, T:0.18
Consensus pattern (65 bp):
TCTCCAACACACCAAATAACTCATAGAGTCAAACATATCCCAAAAGTGAAACATAAAACTAACAC
Found at i:26847417 original size:4 final size:4
Alignment explanation
Indices: 26847408--26847444 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
26847398 TCTAACATTC
26847408 ACAA ACAA ACAA ACAA ACAA ACAA ACAA ACAA ACAA A
1 ACAA ACAA ACAA ACAA ACAA ACAA ACAA ACAA ACAA A
26847445 TAAAGGTGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.76, C:0.24, G:0.00, T:0.00
Consensus pattern (4 bp):
ACAA
Found at i:26849566 original size:22 final size:22
Alignment explanation
Indices: 26849518--26849566 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
26849508 AAAGAGATGA
26849518 TTTTTACAGAGAAAAAATTAGT
1 TTTTTACAGAGAAAAAATTAGT
* *
26849540 GTTTTACAG-GAAAAACTTGAGT
1 TTTTTACAGAGAAAAAATT-AGT
26849562 TTTTT
1 TTTTT
26849567 TTATAAAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.37, C:0.06, G:0.16, T:0.41
Consensus pattern (22 bp):
TTTTTACAGAGAAAAAATTAGT
Found at i:26851251 original size:27 final size:27
Alignment explanation
Indices: 26851213--26851270 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
26851203 CATTTTGAGC
*
26851213 TTCTCTAACTCCAATCTCAGCTTCTCA
1 TTCTCTAACTCCAATCTCAGCCTCTCA
26851240 TTCTCTAACTCCAATCTCAGCCTCTCA
1 TTCTCTAACTCCAATCTCAGCCTCTCA
26851267 TTCT
1 TTCT
26851271 GGTGCAACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.21, C:0.38, G:0.03, T:0.38
Consensus pattern (27 bp):
TTCTCTAACTCCAATCTCAGCCTCTCA
Found at i:26857595 original size:29 final size:29
Alignment explanation
Indices: 26857563--26857622 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
26857553 AAATTTTAAT
* * *
26857563 AAAATATTAAAATATTAAAAATTAGAAAA
1 AAAATATAAAAATAGTAAAAAATAGAAAA
* *
26857592 AAAATATAAAAATCGTAAAAAATATAAAA
1 AAAATATAAAAATAGTAAAAAATAGAAAA
26857621 AA
1 AA
26857623 TTGTAAAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.72, C:0.02, G:0.03, T:0.23
Consensus pattern (29 bp):
AAAATATAAAAATAGTAAAAAATAGAAAA
Found at i:26857601 original size:20 final size:18
Alignment explanation
Indices: 26857571--26857621 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
26857561 ATAAAATATT
26857571 AAAATATTAAAAATTAGAAAA
1 AAAATA-TAAAAA-TAG-AAA
* *
26857592 AAAATATAAAAATCGTAA
1 AAAATATAAAAATAGAAA
26857610 AAAATATAAAAA
1 AAAATATAAAAA
26857622 ATTGTAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 14 0.50
19 2 0.07
20 6 0.21
21 6 0.21
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.22
Consensus pattern (18 bp):
AAAATATAAAAATAGAAA
Found at i:26857628 original size:19 final size:19
Alignment explanation
Indices: 26857571--26857661 Score: 87
Period size: 19 Copynumber: 4.7 Consensus size: 19
26857561 ATAAAATATT
*
26857571 AAAATATTAAAAATTAG-AA
1 AAAATATAAAAAATT-GTAA
* *
26857590 AAAAAATATAAAAATCGTAA
1 AAAATATA-AAAAATTGTAA
26857610 AAAATATAAAAAATTGT-A
1 AAAATATAAAAAATTGTAA
* * *
26857628 AAATTTTATAAAGATTGTAA
1 AAAATATA-AAAAATTGTAA
26857648 AAAATATAAAAAAT
1 AAAATATAAAAAAT
26857662 AGAAGTATAA
Statistics
Matches: 57, Mismatches: 11, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
18 7 0.12
19 28 0.49
20 22 0.39
ACGTcount: A:0.66, C:0.01, G:0.05, T:0.27
Consensus pattern (19 bp):
AAAATATAAAAAATTGTAA
Found at i:26857987 original size:26 final size:27
Alignment explanation
Indices: 26857931--26857993 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 27
26857921 TTTGATGCAT
**
26857931 TTTTTATTTTTATAAAATTTTACAATT
1 TTTTTATTTTTATAAAATTTTACAAAG
** *
26857958 TTTTTATTTTT-TATGATTTTATAAAG
1 TTTTTATTTTTATAAAATTTTACAAAG
26857984 TTTTT-TTTTT
1 TTTTTATTTTT
26857994 CTAATTTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
25 5 0.16
26 15 0.48
27 11 0.35
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (27 bp):
TTTTTATTTTTATAAAATTTTACAAAG
Found at i:26858028 original size:28 final size:28
Alignment explanation
Indices: 26857997--26858051 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
26857987 TTTTTTTCTA
*
26857997 ATTTTTAGTAAATTTTAA-ATATTTTTAC
1 ATTTTTAGTAAAATTTAATA-ATTTTTAC
*
26858025 ATTTTTATTAAAATTTAATAATTTTTA
1 ATTTTTAGTAAAATTTAATAATTTTTA
26858052 TAAAACTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 23 0.96
29 1 0.04
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (28 bp):
ATTTTTAGTAAAATTTAATAATTTTTAC
Found at i:26872917 original size:20 final size:21
Alignment explanation
Indices: 26872872--26872917 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
26872862 AAAACACCTA
26872872 AAATAAA--TAAAAAATAAAT
1 AAATAAAGTTAAAAAATAAAT
* *
26872891 TATTAAAGTTAAAAAA-AAAT
1 AAATAAAGTTAAAAAATAAAT
26872911 AAATAAA
1 AAATAAA
26872918 AATAAAAACC
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
19 5 0.24
20 9 0.43
21 7 0.33
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (21 bp):
AAATAAAGTTAAAAAATAAAT
Found at i:26873957 original size:25 final size:24
Alignment explanation
Indices: 26873912--26873958 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
26873902 TGGGTTAATA
* * *
26873912 GGGAGTGATTTTAGGAGATAATGG
1 GGGAGAGATTTTAGAAAATAATGG
26873936 GGGAGAGATTATTAGAAAATAAT
1 GGGAGAGATT-TTAGAAAATAAT
26873959 CTGATTATCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 9 0.47
25 10 0.53
ACGTcount: A:0.38, C:0.00, G:0.34, T:0.28
Consensus pattern (24 bp):
GGGAGAGATTTTAGAAAATAATGG
Found at i:26880577 original size:21 final size:21
Alignment explanation
Indices: 26880553--26880594 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
26880543 GATGTGACTT
26880553 GAAAGGAAG-AAAATAACAAAA
1 GAAA-GAAGAAAAATAACAAAA
* *
26880574 GAAATAAGAAAAATAAGAAAA
1 GAAAGAAGAAAAATAACAAAA
26880595 CTAAACAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.07
Consensus pattern (21 bp):
GAAAGAAGAAAAATAACAAAA
Found at i:26883343 original size:12 final size:14
Alignment explanation
Indices: 26883313--26883344 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
26883303 AAAAAAAGGA
26883313 AAAAATTAGAATGT
1 AAAAATTAGAATGT
26883327 AAAAATTA-AAT-T
1 AAAAATTAGAATGT
26883339 AAAAAT
1 AAAAAT
26883345 AAAAGTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 3 0.17
14 8 0.44
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (14 bp):
AAAAATTAGAATGT
Found at i:26884328 original size:41 final size:40
Alignment explanation
Indices: 26884220--26884328 Score: 101
Period size: 41 Copynumber: 2.7 Consensus size: 40
26884210 TAAGGTTTCG
* * * * *
26884220 GGGCTTTAGTGGCTTTTTTAAGAAGCATCGCTAATGCATG
1 GGGCTTTAGCGGCGTTTTTAAGAAGCGTCGCTAAAGCATA
* * * * **
26884260 GGGATTTAGCCGCGTTTTTTAAAAAGCGTCGGTAAAGGTTA
1 GGGCTTTAGCGGCG-TTTTTAAGAAGCGTCGCTAAAGCATA
26884301 GGGCTTTAGCGGCGTTTTTAAGGAAGCG
1 GGGCTTTAGCGGCGTTTTTAA-GAAGCG
26884329 CTGCTAGTGC
Statistics
Matches: 53, Mismatches: 14, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
40 17 0.32
41 36 0.68
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.32
Consensus pattern (40 bp):
GGGCTTTAGCGGCGTTTTTAAGAAGCGTCGCTAAAGCATA
Found at i:26884760 original size:21 final size:21
Alignment explanation
Indices: 26884735--26884830 Score: 95
Period size: 21 Copynumber: 4.6 Consensus size: 21
26884725 AGTTACTATT
* *
26884735 TTTA-GGTTTATAGATTATGAG
1 TTTAGGGTTTATGGTTTATG-G
*
26884756 TTTAGGGATTATGGTTTATGG
1 TTTAGGGTTTATGGTTTATGG
* *
26884777 TTTATGGTTTATGGTTTAAGG
1 TTTAGGGTTTATGGTTTATGG
* * *
26884798 TTTAGGGGTTACGGTTTATGA
1 TTTAGGGTTTATGGTTTATGG
*
26884819 TTTAAGGTTTAT
1 TTTAGGGTTTAT
26884831 AGATTAAGGG
Statistics
Matches: 60, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
21 48 0.80
22 12 0.20
ACGTcount: A:0.22, C:0.01, G:0.28, T:0.49
Consensus pattern (21 bp):
TTTAGGGTTTATGGTTTATGG
Found at i:26884799 original size:7 final size:7
Alignment explanation
Indices: 26884735--26884830 Score: 86
Period size: 7 Copynumber: 13.7 Consensus size: 7
26884725 AGTTACTATT
26884735 TTTA-GG
1 TTTATGG
*
26884741 TTTATAG
1 TTTATGG
*
26884748 ATTATGAG
1 TTTATG-G
*
26884756 TTTAGGG
1 TTTATGG
*
26884763 ATTATGG
1 TTTATGG
26884770 TTTATGG
1 TTTATGG
26884777 TTTATGG
1 TTTATGG
26884784 TTTATGG
1 TTTATGG
*
26884791 TTTAAGG
1 TTTATGG
*
26884798 TTTAGGG
1 TTTATGG
* *
26884805 GTTACGG
1 TTTATGG
*
26884812 TTTATGA
1 TTTATGG
*
26884819 TTTAAGG
1 TTTATGG
26884826 TTTAT
1 TTTAT
26884831 AGATTAAGGG
Statistics
Matches: 70, Mismatches: 18, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
6 4 0.06
7 61 0.87
8 5 0.07
ACGTcount: A:0.22, C:0.01, G:0.28, T:0.49
Consensus pattern (7 bp):
TTTATGG
Found at i:26884837 original size:14 final size:14
Alignment explanation
Indices: 26884671--26884839 Score: 92
Period size: 14 Copynumber: 11.9 Consensus size: 14
26884661 TTAATTATCA
*
26884671 TTATAGTTTATGGT
1 TTATAGTTTAAGGT
26884685 TTATAG-TTAAGGGT
1 TTATAGTTTAA-GGT
* *
26884699 ATATAGTTTAGGGT
1 TTATAGTTTAAGGT
*
26884713 TTAAAGTTTAAGAG-
1 TTATAGTTTAAG-GT
* *
26884727 TTACTATTTTTAGGT
1 TTA-TAGTTTAAGGT
* *
26884742 TTATAGATTATGAGT
1 TTATAGTTTAAG-GT
** * *
26884757 TTAGGGATTATGGT
1 TTATAGTTTAAGGT
* *
26884771 TTATGGTTTATGGT
1 TTATAGTTTAAGGT
*
26884785 TTATGGTTTAAGGT
1 TTATAGTTTAAGGT
** * *
26884799 TTAGGGGTTACGGT
1 TTATAGTTTAAGGT
26884813 TTAT-GATTTAAGGT
1 TTATAG-TTTAAGGT
*
26884827 TTATAGATTAAGG
1 TTATAGTTTAAGG
26884840 GTTGGGGTTT
Statistics
Matches: 122, Mismatches: 25, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
13 4 0.03
14 92 0.75
15 26 0.21
ACGTcount: A:0.26, C:0.01, G:0.26, T:0.47
Consensus pattern (14 bp):
TTATAGTTTAAGGT
Found at i:26884850 original size:21 final size:21
Alignment explanation
Indices: 26884824--26884883 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
26884814 TATGATTTAA
26884824 GGTTTATAGATTAAGGGTT-GG
1 GGTTTA-AGATTAAGGGTTAGG
* * *
26884845 GGTTTAGGGTTAGGGGTTAGG
1 GGTTTAAGATTAAGGGTTAGG
26884866 GG-TTAAGAGTTAAGGGTT
1 GGTTTAAGA-TTAAGGGTT
26884884 TAAGGTTTAG
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
20 13 0.42
21 18 0.58
ACGTcount: A:0.22, C:0.00, G:0.43, T:0.35
Consensus pattern (21 bp):
GGTTTAAGATTAAGGGTTAGG
Found at i:26885015 original size:16 final size:16
Alignment explanation
Indices: 26884996--26885050 Score: 69
Period size: 16 Copynumber: 3.5 Consensus size: 16
26884986 ATAGTTTAAA
*
26884996 TTATTTATAAATAATT
1 TTATATATAAATAATT
26885012 TTATAT-TAAATAA-T
1 TTATATATAAATAATT
26885026 TTATATATTAAATAATT
1 TTATATA-TAAATAATT
*
26885043 TAATATAT
1 TTATATAT
26885051 TAACATAATG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
14 7 0.21
15 7 0.21
16 13 0.38
17 7 0.21
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TTATATATAAATAATT
Found at i:26885023 original size:15 final size:16
Alignment explanation
Indices: 26885003--26885059 Score: 89
Period size: 16 Copynumber: 3.5 Consensus size: 16
26884993 AAATTATTTA
26885003 TAAATAATTT-TATAT
1 TAAATAATTTATATAT
26885018 TAAATAATTTATATAT
1 TAAATAATTTATATAT
26885034 TAAATAATTTAATATAT
1 TAAATAATTT-ATATAT
26885051 TAACATAAT
1 TAA-ATAAT
26885060 GATTATAGTG
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.26
16 15 0.38
17 9 0.23
18 5 0.13
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TAAATAATTTATATAT
Found at i:26885066 original size:17 final size:15
Alignment explanation
Indices: 26885003--26885066 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 15
26884993 AAATTATTTA
*
26885003 TAAATAATTTTATAT
1 TAAATAATATTATAT
*
26885018 TAAATAATTTATATAT
1 TAAATAATAT-TATAT
*
26885034 TAAATAATTTAATATAT
1 TAAATAA--TATTATAT
26885051 TAACATAATGATTATA
1 TAA-ATAAT-ATTATA
26885067 GTGTTTTTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
15 10 0.24
16 13 0.32
17 13 0.32
18 5 0.12
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
TAAATAATATTATAT
Found at i:26885192 original size:14 final size:14
Alignment explanation
Indices: 26885173--26885200 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26885163 TTAATTATGA
26885173 TTATAGTTTTGGGT
1 TTATAGTTTTGGGT
26885187 TTATAGTTTTGGGT
1 TTATAGTTTTGGGT
26885201 ATATGGTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.29, T:0.57
Consensus pattern (14 bp):
TTATAGTTTTGGGT
Done.