genome.fa.s230.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1656
Parameters: 2 7 7 80 10 50 1000
Length:  229488

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
877--928	26	2.0	26	92	0	86	28	34	21	15	1.94
1405--1466	29	2.2	28	80	11	72	30	29	6	33	1.83
8842--8905	30	2.2	29	81	10	76	29	28	6	35	1.82
8849--8905	30	1.9	30	85	3	80	29	24	7	38	1.82
12085--12112	14	2.0	14	100	0	56	42	7	0	50	1.30
14203--14247	20	2.2	20	88	0	63	35	13	2	48	1.54
18667--18709	6	7.2	6	89	0	68	16	20	0	62	1.32
19932--20164	52	4.5	52	75	4	218	31	12	15	39	1.85
19932--20164	105	2.2	104	83	3	281	31	12	15	39	1.85
20418--20532	15	7.4	15	70	10	52	22	14	26	35	1.93
20429--20496	15	4.3	15	75	15	57	23	11	27	36	1.90
23058--23235	27	6.6	27	84	3	205	26	14	28	29	1.95
23058--23235	54	3.3	55	84	4	227	26	14	28	29	1.95
30948--31123	27	6.5	27	84	2	192	26	14	28	30	1.95
30947--31123	54	3.3	54	84	5	225	26	14	28	29	1.95
30948--31102	81	1.9	81	89	2	240	26	14	29	29	1.95
30944--31123	81	2.2	81	84	2	236	26	15	28	30	1.96
40465--40505	20	2.0	20	85	0	55	7	24	26	41	1.81
40636--40675	3	13.3	3	100	0	80	65	0	0	35	0.93
43821--43855	18	2.0	18	94	5	63	14	40	28	17	1.88
51732--51816	33	2.6	32	88	7	125	36	29	8	25	1.85
58006--58030	12	2.1	12	100	0	50	36	8	8	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63348--63380	12	2.8	12	86	13	50	60	0	6	33	1.21
64180--64234	24	2.3	24	100	0	110	43	21	10	23	1.84
64422--64460	20	2.0	20	100	0	78	35	0	15	48	1.45
65411--65485	11	6.8	11	71	24	52	54	2	1	41	1.23
65411--65485	36	2.1	36	85	9	100	54	2	1	41	1.23
70499--70635	60	2.3	59	82	8	152	28	21	24	25	1.99
78250--78281	15	2.1	15	94	0	55	68	9	6	15	1.36
82119--82179	27	2.3	27	88	0	86	32	11	18	37	1.86
85079--85324	49	4.9	51	81	3	250	26	19	25	29	1.98
87562--87757	40	4.9	40	84	7	272	23	28	22	25	2.00
87562--87752	80	2.4	80	92	1	312	24	28	23	24	1.99
95850--96079	49	4.6	50	80	4	259	25	16	27	30	1.97
97386--97561	46	3.8	46	79	14	209	20	20	29	29	1.98
97383--97554	93	1.8	93	95	2	310	20	20	29	28	1.98
110768--110862	27	3.4	28	89	2	129	26	12	28	32	1.93
110793--110876	27	3.0	27	87	5	96	29	11	25	33	1.91
118714--118811	27	3.5	28	90	2	135	26	13	28	31	1.94
118742--118824	27	3.0	27	87	5	96	30	12	25	32	1.92
118714--118825	28	4.0	27	83	6	98	28	12	25	33	1.92
122879--122985	38	2.8	38	85	0	160	17	22	29	29	1.97
124275--124338	32	2.0	32	87	3	94	35	25	1	37	1.65
125584--125620	17	2.2	17	100	0	74	51	13	5	29	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125624--125726	43	2.4	42	79	12	111	36	15	21	26	1.93
126915--127184	40	6.8	40	80	5	271	24	15	25	34	1.95
128687--128946	43	6.0	43	80	0	223	40	19	15	24	1.90
128694--128946	129	2.0	129	80	0	290	41	19	14	24	1.89
128864--128960	43	2.3	43	83	0	113	40	18	18	22	1.92
133732--133770	19	2.1	19	95	0	69	28	17	25	28	1.98
145934--145977	20	2.2	20	95	0	79	50	11	27	11	1.72
145941--145984	20	2.2	20	83	0	52	54	11	27	6	1.61
149009--149033	13	1.9	13	100	0	50	24	36	32	8	1.84
156295--156392	41	2.4	41	89	0	142	21	22	24	31	1.98
163472--163564	4	23.8	4	75	8	50	49	0	2	48	1.13
163456--163586	51	2.6	51	86	2	174	48	0	3	48	1.17
163522--163588	24	2.9	22	78	12	80	44	0	0	55	0.99
166642--166765	41	3.0	41	76	4	133	25	20	18	35	1.95
168266--168397	59	2.2	59	94	0	228	32	15	20	31	1.93
168662--168718	26	2.2	26	93	3	98	36	8	21	33	1.84
179330--179599	43	6.3	43	77	4	213	38	21	14	25	1.91
179285--179618	129	2.6	130	79	5	313	39	20	13	26	1.90
184183--184387	53	3.8	53	80	1	149	21	21	18	38	1.93
184195--184387	55	3.6	54	80	2	208	20	21	19	38	1.94
191151--191334	55	3.4	54	79	2	208	19	24	19	36	1.94
197155--197205	26	2.0	26	96	0	93	29	35	23	11	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197061--197387	104	3.2	104	95	1	577	31	31	19	18	1.96
197716--197779	30	2.2	29	81	10	76	29	28	6	35	1.82
197723--197779	30	1.9	30	85	3	80	29	24	7	38	1.82
202567--202623	29	2.0	29	86	6	80	28	10	5	56	1.55
217936--218002	19	3.6	19	78	17	61	41	2	2	52	1.32
218755--218787	5	6.8	5	89	3	50	39	0	18	42	1.50
222621--222740	46	2.6	47	84	6	165	30	30	18	20	1.96
223147--223206	30	2.0	30	90	0	93	30	25	8	36	1.85

Tables:   1

The End!