Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2300
Parameters: 2 7 7 80 10 50 1000
Length:  195119

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1716--1952
49
4.7
50
83
7
268
27
24
28
19
1.99
1720--1960
99
2.4
102
84
9
316
26
24
28
21
1.99
8758--9006
50
4.8
50
85
4
284
20
29
24
26
1.99
8757--9006
100
2.4
104
88
6
357
20
29
24
26
1.99
9101--9132
13
2.5
13
94
0
55
56
12
0
31
1.37
9344--9401
30
1.9
30
89
0
89
31
24
3
41
1.71
13001--13043
21
2.1
20
82
4
50
67
0
0
32
0.91
24787--25027
126
1.9
126
89
3
378
41
15
14
28
1.86
25642--25682
20
2.0
21
85
4
57
60
0
7
31
1.24
25656--25687
17
1.9
17
93
6
57
59
0
3
37
1.13
25705--25747
15
2.9
15
89
3
61
67
2
2
27
1.15
26756--26791
17
2.3
15
90
9
54
8
0
47
44
1.33
43076--43100
3
8.3
3
100
0
50
68
0
32
0
0.90
44999--45030
3
10.7
3
100
0
64
34
0
0
65
0.93
56193--56262
28
2.4
29
81
11
72
51
7
5
35
1.53
60553--60582
6
5.0
6
100
0
60
16
0
50
33
1.46
66643--66685
22
2.0
22
90
9
70
30
2
9
58
1.42
67038--67090
25
2.3
23
84
15
65
60
3
5
30
1.37
67338--67509
59
2.9
60
83
3
188
22
23
9
43
1.83
67338--67510
60
2.9
59
81
7
181
22
23
9
43
1.83
67972--68013
19
2.3
19
87
4
59
59
4
2
33
1.31
68489--68549
28
2.3
26
77
8
68
21
16
3
59
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68656--68713
31
1.9
30
86
10
82
29
3
5
62
1.33
81547--81575
14
2.1
14
100
0
58
44
13
20
20
1.85
92248--92428
46
4.0
46
88
2
240
40
14
23
20
1.90
106877--107027
53
2.8
53
87
4
196
30
28
15
25
1.96
113910--114060
53
2.8
53
89
4
214
29
27
16
25
1.97
115718--115844
42
3.0
42
82
8
145
28
26
14
29
1.96
115944--116123
31
5.8
31
87
5
256
26
26
19
27
1.99
127626--127667
9
4.6
9
77
16
50
57
0
2
40
1.12
129170--129229
24
2.5
24
86
5
77
30
0
13
56
1.37
146727--146773
24
2.0
24
83
8
60
48
8
4
38
1.53
146849--146891
21
2.0
22
90
4
70
44
0
2
53
1.13
147284--147342
28
2.1
28
81
12
68
50
6
5
37
1.51
150115--150144
9
3.2
9
90
9
51
43
0
13
43
1.43
150115--150154
19
2.1
19
85
0
53
40
0
12
47
1.41
150664--150711
24
2.0
24
100
0
96
45
4
16
33
1.67
153733--153774
19
2.4
17
81
14
50
33
0
14
52
1.42
157622--157649
6
4.7
6
100
0
56
17
35
17
28
1.93
159222--159298
38
2.0
38
94
0
136
45
7
16
29
1.76
166285--166343
26
2.3
26
83
11
70
45
3
1
49
1.28
167628--167678
23
2.3
23
86
6
70
68
0
1
29
1.00
169745--169794
2
25.0
2
100
0
100
0
50
0
50
1.00
172879--172924
15
2.8
16
83
12
58
19
10
0
69
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
175785--175843
16
3.6
17
74
19
63
57
3
3
35
1.32
176873--176992
48
2.5
48
100
0
240
38
19
0
42
1.51
178582--178606
5
5.0
5
100
0
50
60
0
0
40
0.97
181237--181297
31
2.0
31
96
0
113
37
11
6
44
1.67
182577--182614
20
1.9
20
88
0
58
76
0
10
13
1.02
183154--183195
20
2.1
20
86
8
59
42
2
0
54
1.13
183160--183218
25
2.3
25
85
8
84
42
1
0
55
1.09
184425--184726
159
2.0
149
85
12
406
47
11
5
36
1.62

Tables:   1

The End!