Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold524
Parameters: 2 7 7 80 10 50 1000
Length:  28188

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
522--618
30
3.2
31
73
5
101
27
28
15
27
1.96
3142--3180
15
2.6
14
84
15
51
79
2
17
0
0.84
3246--3276
12
2.6
12
94
0
53
48
12
12
25
1.77
3279--3303
12
2.1
12
100
0
50
76
0
16
8
1.02
3279--3359
29
2.7
31
77
9
87
64
1
23
11
1.33
3292--3345
28
1.9
28
85
7
74
61
1
24
12
1.42
4906--4961
29
2.0
29
92
3
96
25
0
30
44
1.54
9528--9583
28
2.0
28
92
0
94
25
0
30
44
1.54
11691--11787
30
3.2
31
73
5
101
27
28
15
27
1.96
14328--14369
16
2.6
16
78
14
50
76
2
19
2
1.01
14417--14446
12
2.6
12
94
5
53
46
13
13
26
1.80
14449--14473
12
2.1
12
100
0
50
76
0
16
8
1.02
14443--14486
18
2.4
18
84
3
52
70
2
18
9
1.24
14462--14514
28
1.9
27
88
3
79
62
1
22
13
1.40
16075--16130
29
2.0
29
92
3
96
25
0
30
44
1.54
20703--20754
28
1.9
27
84
7
70
26
0
28
44
1.55
22854--22950
30
3.2
31
73
5
101
27
28
15
27
1.96
27480--27576
30
3.2
30
77
2
106
28
15
26
28
1.96

Tables:   1

The End!