genome.fa.s232.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3746
Parameters: 2 7 7 80 10 50 1000
Length:  167119

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3428--3459	13	2.5	13	94	0	55	31	0	12	56	1.37
3557--3794	50	4.7	50	85	6	295	26	23	29	20	1.99
3557--3795	98	2.3	103	86	8	330	25	23	29	20	1.99
8042--8079	11	3.5	11	82	13	51	73	2	0	23	0.95
23703--23941	50	4.7	50	81	8	245	25	23	28	21	1.99
23703--23934	49	4.5	51	80	11	246	26	24	28	20	1.99
23703--23942	97	2.3	105	83	11	302	25	23	28	21	1.99
26045--26089	23	2.0	23	86	8	65	22	17	17	42	1.89
28339--28379	10	3.9	11	75	12	50	0	31	0	68	0.90
32562--32619	30	1.9	30	89	0	89	41	3	24	31	1.71
32830--32861	13	2.5	13	94	0	55	31	0	12	56	1.37
32955--33195	50	4.7	50	85	5	270	26	24	29	19	1.99
32955--33203	100	2.4	103	87	7	355	26	23	29	20	1.99
35335--35373	6	6.5	6	81	0	51	20	17	15	46	1.84
42548--42587	20	2.0	20	100	0	80	35	10	15	40	1.80
45022--45050	15	1.9	15	100	0	58	6	51	0	41	1.28
51562--51602	16	2.5	17	80	11	59	31	0	0	68	0.90
51532--51632	46	2.2	46	81	8	109	40	0	1	57	1.10
51591--51654	30	2.2	28	83	5	74	46	1	1	50	1.20
53142--53187	24	2.0	23	86	4	65	63	0	36	0	0.95
54829--54925	45	2.2	45	90	0	149	18	17	20	43	1.88
56364--56420	30	1.9	30	85	3	80	42	1	24	31	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56632--56663	13	2.5	13	94	0	55	31	0	12	56	1.37
56758--56999	50	4.7	50	86	4	297	26	24	29	19	1.99
56758--57007	100	2.4	103	88	6	364	26	24	29	20	1.99
61639--61702	30	2.2	29	81	10	76	29	28	6	35	1.82
61646--61702	30	1.9	30	85	3	80	29	24	7	38	1.82
72313--72541	114	2.0	114	98	0	440	35	23	9	31	1.87
73058--73111	21	2.5	22	85	8	76	27	9	35	27	1.87
73225--73271	19	2.6	18	82	3	58	59	4	2	34	1.29
73280--73336	30	1.9	30	89	7	89	31	12	10	45	1.76
76337--76362	6	4.3	6	100	0	52	38	0	61	0	0.96
86495--86539	21	2.2	20	92	4	72	28	26	17	26	1.98
88372--88414	3	14.3	3	100	0	86	67	0	32	0	0.91
94511--94631	39	3.1	39	93	0	215	23	31	23	20	1.98
97190--97381	55	3.6	53	83	6	217	21	25	18	34	1.96
97579--97665	44	2.0	44	86	4	122	24	26	13	35	1.93
98094--98121	7	4.0	7	100	0	56	14	14	14	57	1.66
101833--101866	3	11.3	3	93	0	50	58	0	35	5	1.22
110431--110472	18	2.2	20	91	8	70	28	2	0	69	1.01
110439--110480	19	2.2	19	83	8	50	40	0	0	59	0.97
111539--111573	7	5.0	7	100	0	70	14	28	42	14	1.84
114618--114649	2	16.5	2	93	6	57	50	0	50	0	1.00
115738--115772	18	1.9	18	88	0	52	37	2	11	48	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121774--121798	7	3.6	7	100	0	50	68	0	0	32	0.90
133239--133273	18	1.9	18	88	0	52	34	5	2	57	1.37
133574--133623	22	2.2	23	86	10	68	66	2	4	28	1.21
134085--134123	20	2.0	20	84	0	51	48	5	5	41	1.47
137240--137264	8	3.1	8	100	0	50	76	0	0	24	0.80
137507--137574	30	2.3	30	82	5	75	27	20	4	47	1.69
138148--138219	3	25.0	3	79	13	80	31	0	4	63	1.13
138293--138351	25	2.5	24	86	13	86	47	3	10	38	1.54
141341--141369	15	2.0	15	93	6	51	68	0	0	31	0.89
141625--141682	27	2.1	29	84	9	77	63	0	3	32	1.11
145219--145268	17	2.7	20	78	18	70	10	0	44	46	1.37
149858--149907	17	2.7	20	78	18	70	10	0	44	46	1.37
155728--155786	27	2.1	28	82	14	70	61	1	0	37	1.07
157602--157651	15	3.3	15	75	10	57	22	36	2	40	1.65
157602--157667	30	2.2	29	81	10	71	24	36	3	36	1.71
165053--165113	30	2.0	30	93	0	104	39	6	29	24	1.80

Tables:   1

The End!