Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2297
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 156935
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Found at i:4494 original size:18 final size:18
Alignment explanation
Indices: 4433--4496 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
4423 ATCGGTTAAA
* *
4433 TCAGTAATATTCATTTAT
1 TCAGTAACAGTCATTTAT
* *
4451 TCAGTATCAGTCGTTTAT
1 TCAGTAACAGTCATTTAT
* *
4469 TCTGTAACAGTCAATTAT
1 TCAGTAACAGTCATTTAT
4487 TCAGTAACAG
1 TCAGTAACAG
4497 ATAGTCTTTA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (18 bp):
TCAGTAACAGTCATTTAT
Found at i:4636 original size:13 final size:13
Alignment explanation
Indices: 4615--4649 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
4605 GGAATACACC
*
4615 GTAAGAGTAAACA
1 GTAACAGTAAACA
4628 GTAACAGTAAACA
1 GTAACAGTAAACA
4641 GTAACAGTA
1 GTAACAGTA
4650 GCGGTAACAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.51, C:0.11, G:0.20, T:0.17
Consensus pattern (13 bp):
GTAACAGTAAACA
Found at i:5728 original size:17 final size:17
Alignment explanation
Indices: 5706--5740 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
5696 AATTTTCTCT
5706 TTTCTTCCTTTCTTTTC
1 TTTCTTCCTTTCTTTTC
*
5723 TTTCTTTCTTTCTTTTC
1 TTTCTTCCTTTCTTTTC
5740 T
1 T
5741 CCTTGTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTCTTCCTTTCTTTTC
Found at i:5740 original size:13 final size:13
Alignment explanation
Indices: 5703--5737 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
5693 TTTAATTTTC
*
5703 TCTTTTCTTCCTT
1 TCTTTTCTTTCTT
5716 TCTTTTCTTTCTT
1 TCTTTTCTTTCTT
5729 TC-TTTCTTT
1 TCTTTTCTTT
5738 TCTCCTTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 7 0.33
13 14 0.67
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (13 bp):
TCTTTTCTTTCTT
Found at i:6088 original size:21 final size:20
Alignment explanation
Indices: 6049--6086 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6039 TATTATTTAA
6049 TATTTATTATAATAAAAATC
1 TATTTATTATAATAAAAATC
6069 TATTTACTTA-AATAAAAA
1 TATTTA-TTATAATAAAAA
6087 ATTAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (20 bp):
TATTTATTATAATAAAAATC
Found at i:6270 original size:21 final size:21
Alignment explanation
Indices: 6245--6285 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
6235 TACATACATG
6245 TATTACAAATG-ATGTATTATA
1 TATTACAAATGTAT-TATTATA
*
6266 TATTACACATGTATTATTAT
1 TATTACAAATGTATTATTAT
6286 TTTTTGCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (21 bp):
TATTACAAATGTATTATTATA
Found at i:8648 original size:50 final size:50
Alignment explanation
Indices: 8524--8772 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
8514 GATAATAACA
* * ** * *
8524 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
8575 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
8625 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
8675 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
8730 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
8773 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:8702 original size:100 final size:104
Alignment explanation
Indices: 8523--8772 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
8513 TGATAATAAC
**
8523 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
8588 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
8625 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
8688 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
8730 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
8773 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:8888 original size:13 final size:13
Alignment explanation
Indices: 8867--8898 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8857 GCTTGGATCA
*
8867 TCATCAAATAAAT
1 TCATAAAATAAAT
8880 TCATAAAATAAAT
1 TCATAAAATAAAT
8893 TCATAA
1 TCATAA
8899 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:9145 original size:30 final size:30
Alignment explanation
Indices: 9110--9167 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
9100 CCTCGACTCT
*
9110 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
9140 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
9168 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:16224 original size:50 final size:50
Alignment explanation
Indices: 16100--16337 Score: 257
Period size: 49 Copynumber: 4.6 Consensus size: 50
16090 GATAATAACA
* * ** * *
16100 TGCCAAAGCCATGTCCCAGACATGGTCTTAC-GTGAGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAG-GGGA-CCTCTCAT-CTCGG
* *
16151 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
16201 TGCCAACGCCATGTCCCAGACATGGTCTTACA-TGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
16250 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
16305 ATGCCAATGCCATGTCCCAGACATGGTCTTACA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACA
16338 TGGATCTCTT
Statistics
Matches: 159, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
49 46 0.29
50 45 0.28
51 31 0.19
52 1 0.01
53 2 0.01
54 1 0.01
55 2 0.01
56 31 0.19
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:16271 original size:99 final size:103
Alignment explanation
Indices: 16099--16346 Score: 335
Period size: 99 Copynumber: 2.4 Consensus size: 103
16089 TGATAATAAC
* **
16099 ATGCCAAAGCCATGTCCCAGACATGGTCTTACGTGAGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATG-GA-CCTCTCGTGATGGTGCCCATGCCATG
* *
16164 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
64 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
16201 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGACCTCTCGT-CTCGGTGCCCATGCCATGT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGACCTCTCGTGAT-GGTGCCCATGCCATGT
16264 CCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 CCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
16305 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGACCTCT
16347 TTACCCAAAT
Statistics
Matches: 130, Mismatches: 9, Indels: 11
0.87 0.06 0.07
Matches are distributed among these distances:
98 1 0.01
99 50 0.38
100 2 0.02
101 32 0.25
102 3 0.02
103 1 0.01
104 2 0.02
105 39 0.30
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.26
Consensus pattern (103 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGACCTCTCGTGATGGTGCCCATGCCATGTC
CCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:16462 original size:13 final size:13
Alignment explanation
Indices: 16441--16472 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
16431 GCTTGGATCA
*
16441 TCATCAAATAAAT
1 TCATAAAATAAAT
16454 TCATAAAATAAAT
1 TCATAAAATAAAT
16467 TCATAA
1 TCATAA
16473 TTTCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:16719 original size:30 final size:29
Alignment explanation
Indices: 16684--16740 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
16674 CCTCGACTCT
*
16684 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTAC-ATTTTGCCCCTA
* *
16714 AACTTTTACATAATTACATTTTTCCCC
1 AACTTTTACAAAATTACATTTTGCCCC
16741 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 9 0.38
30 15 0.62
ACGTcount: A:0.32, C:0.25, G:0.02, T:0.42
Consensus pattern (29 bp):
AACTTTTACAAAATTACATTTTGCCCCTA
Found at i:23907 original size:64 final size:63
Alignment explanation
Indices: 23800--23990 Score: 229
Period size: 64 Copynumber: 3.0 Consensus size: 63
23790 TGTATGCTTT
* * * ** * * *
23800 GGTTAAATTTCGATAATGCACTAAGTGCCAGAATGACAAGATAGTGCTAAGTGCATATTACTTC
1 GGTTATATTTTGATGATGCACTAAGTGATAGAATGATATGATAGTGTTAA-TGCATATTACTTC
* *
23864 GGTTATATTTTGATGATGCACTAAGTGTTAGAATGATATGATAGTGTTGAACGCATATTACTTC
1 GGTTATATTTTGATGATGCACTAAGTGATAGAATGATATGATAGTGTT-AATGCATATTACTTC
* * * *
23928 GGTTATATTCTGATGATGCACTAAGTGATAGAATAATATGATAGCGTTGACTGCATATTACTT
1 GGTTATATTTTGATGATGCACTAAGTGATAGAATGATATGATAGTGTT-AATGCATATTACTT
23991 TGGACTTTCC
Statistics
Matches: 111, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
64 109 0.98
65 2 0.02
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.35
Consensus pattern (63 bp):
GGTTATATTTTGATGATGCACTAAGTGATAGAATGATATGATAGTGTTAATGCATATTACTTC
Found at i:32698 original size:3 final size:3
Alignment explanation
Indices: 32690--32722 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
32680 CTATATATAT
32690 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
32723 ACTGGTTTGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:33113 original size:64 final size:64
Alignment explanation
Indices: 33030--33159 Score: 179
Period size: 64 Copynumber: 2.0 Consensus size: 64
33020 GGGTATATAT
* ** *
33030 TTCGGTTAAATTCCAATGATGCACTAAGTGTTAAAATGATATGATAGTGCTAAGCACATATTAC
1 TTCGGTTAAATTCCAATGATACACTAAGTGCCAAAATGATATGATAGGGCTAAGCACATATTAC
* * * * *
33094 TTCGGTTATATTTCGATGATACACTAAGTGCCAGAATGATATGATAGGGCTAAGCGCATATTAC
1 TTCGGTTAAATTCCAATGATACACTAAGTGCCAAAATGATATGATAGGGCTAAGCACATATTAC
33158 TT
1 TT
33160 TGGACTTTTT
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (64 bp):
TTCGGTTAAATTCCAATGATACACTAAGTGCCAAAATGATATGATAGGGCTAAGCACATATTAC
Found at i:35033 original size:24 final size:24
Alignment explanation
Indices: 35006--35051 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
34996 ATCTATATAA
*
35006 AAAAAATCAAAATATATAATATGT
1 AAAAAATCAAAATAAATAATATGT
** *
35030 AAAAGTTTAAAATAAATAATAT
1 AAAAAATCAAAATAAATAATAT
35052 ATACATAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
AAAAAATCAAAATAAATAATATGT
Found at i:35047 original size:28 final size:27
Alignment explanation
Indices: 35015--35098 Score: 82
Period size: 28 Copynumber: 3.1 Consensus size: 27
35005 AAAAAAATCA
*
35015 AAATATATAATATGTAAAAGTTTAAAAT
1 AAATA-ATAATATGTAAAAATTTAAAAT
** **
35043 AAATAATATATACATAAAAAAATAAAAT
1 AAATAATA-ATATGTAAAAATTTAAAAT
35071 AAATAAT-ATATG-AAATAATTTAAAAT
1 AAATAATAATATGTAAA-AATTTAAAAT
35097 AA
1 AA
35099 TATGTAATAA
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
25 3 0.07
26 13 0.29
27 3 0.07
28 26 0.58
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (27 bp):
AAATAATAATATGTAAAAATTTAAAAT
Found at i:35838 original size:52 final size:52
Alignment explanation
Indices: 35757--35863 Score: 137
Period size: 52 Copynumber: 2.1 Consensus size: 52
35747 AAAATATTAA
* * * * *
35757 TCTAAACATCATAATAATTAATTATTTAAAATTAACTAA-TATGATAATATTT
1 TCTAAACATCATAATAATTAATCAATTAAAAATAAATAATTA-AATAATATTT
35809 TCTAAACATCATAATAATTAA-CAGATTAAAAATAAATAATTAAATAATATTT
1 TCTAAACATCATAATAATTAATCA-ATTAAAAATAAATAATTAAATAATATTT
35861 TCT
1 TCT
35864 TACCATTTGT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
51 1 0.02
52 45 0.94
53 2 0.04
ACGTcount: A:0.50, C:0.08, G:0.02, T:0.39
Consensus pattern (52 bp):
TCTAAACATCATAATAATTAATCAATTAAAAATAAATAATTAAATAATATTT
Found at i:36042 original size:14 final size:15
Alignment explanation
Indices: 36002--36058 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 15
35992 AATTTAGATT
36002 AGAAAATCGAGAAT-
1 AGAAAATCGAGAATA
* * **
36016 TGACAATTAAGAATA
1 AGAAAATCGAGAATA
36031 A-AAAATCGAGAATA
1 AGAAAATCGAGAATA
*
36045 AGAAAATTGAGAAT
1 AGAAAATCGAGAAT
36059 CAAACTGTGA
Statistics
Matches: 32, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
14 21 0.66
15 11 0.34
ACGTcount: A:0.58, C:0.05, G:0.18, T:0.19
Consensus pattern (15 bp):
AGAAAATCGAGAATA
Found at i:36479 original size:19 final size:18
Alignment explanation
Indices: 36455--36493 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
36445 TTGTTTAATA
36455 AAAATAAATATGGATTTTT
1 AAAAT-AATATGGATTTTT
* *
36474 AAAATATTATTGATTTTT
1 AAAATAATATGGATTTTT
36492 AA
1 AA
36494 TTTTAATCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (18 bp):
AAAATAATATGGATTTTT
Found at i:45873 original size:23 final size:21
Alignment explanation
Indices: 45853--45892 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
45843 ACCGAAAGAC
45853 TGCTAGAAACAGAGAGAAAAG
1 TGCTAGAAACAGAGAGAAAAG
* *
45874 TGGTAGAAATAGAGAGAAA
1 TGCTAGAAACAGAGAGAAA
45893 CGTTGATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.05, G:0.30, T:0.12
Consensus pattern (21 bp):
TGCTAGAAACAGAGAGAAAAG
Found at i:46958 original size:21 final size:23
Alignment explanation
Indices: 46934--46986 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 23
46924 TAGATTTAAA
46934 AATTTTAATTTTAATTGA-A-TT
1 AATTTTAATTTTAATTGAGATTT
* *
46955 AATTTTAAATTTAGTTGAGATTT
1 AATTTTAATTTTAATTGAGATTT
*
46978 AATTATAAT
1 AATTTTAAT
46987 CTAAAATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 16 0.62
22 1 0.04
23 9 0.35
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.53
Consensus pattern (23 bp):
AATTTTAATTTTAATTGAGATTT
Found at i:49089 original size:13 final size:14
Alignment explanation
Indices: 49071--49099 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
49061 CTATCGTAAT
49071 AATATTT-TATAAA
1 AATATTTATATAAA
49084 AATATTTATATAAA
1 AATATTTATATAAA
49098 AA
1 AA
49100 CAGGAAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AATATTTATATAAA
Found at i:55768 original size:24 final size:24
Alignment explanation
Indices: 55712--55768 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
55702 CCGTGTGTGT
* * *
55712 GAATCTGAATATGCATTTGTTTCT
1 GAATATGAATATGCATTTGTATCC
* *
55736 GAATCTGAATATGTATTTGTATCC
1 GAATATGAATATGCATTTGTATCC
*
55760 GATTATGAA
1 GAATATGAA
55769 ATACATATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.42
Consensus pattern (24 bp):
GAATATGAATATGCATTTGTATCC
Found at i:60265 original size:19 final size:20
Alignment explanation
Indices: 60214--60265 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
60204 CTAGCAGTTA
*
60214 CAAATCAAGCAATGAAAATCC
1 CAAAT-AAGCCATGAAAATCC
*
60235 CAAATAATCCATGAAAAT-C
1 CAAATAAGCCATGAAAATCC
*
60254 CAAATAGGCCAT
1 CAAATAAGCCAT
60266 TATTACAGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 11 0.41
20 11 0.41
21 5 0.19
ACGTcount: A:0.50, C:0.23, G:0.10, T:0.17
Consensus pattern (20 bp):
CAAATAAGCCATGAAAATCC
Found at i:61088 original size:18 final size:18
Alignment explanation
Indices: 61049--61082 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
61039 CATGTAATTT
61049 GCCCATGTGGACCCACAC
1 GCCCATGTGGACCCACAC
*
61067 GCCCGTGTGG-CCCACA
1 GCCCATGTGGACCCACA
61083 AGGCCCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.18, C:0.44, G:0.26, T:0.12
Consensus pattern (18 bp):
GCCCATGTGGACCCACAC
Found at i:63645 original size:21 final size:20
Alignment explanation
Indices: 63608--63650 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
63598 ATCAGCTCAC
*
63608 TTGAGCTCATTTCAGCTTGT
1 TTGAGCTCATTTCAGCTCGT
* *
63628 TTGAGCTTGATTTTAGCTCGT
1 TTGAGC-TCATTTCAGCTCGT
63649 TT
1 TT
63651 CAGTCCATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.14, C:0.16, G:0.21, T:0.49
Consensus pattern (20 bp):
TTGAGCTCATTTCAGCTCGT
Found at i:63904 original size:13 final size:13
Alignment explanation
Indices: 63886--63910 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63876 TAGTTGTGTT
63886 TTATTTAATTATG
1 TTATTTAATTATG
63899 TTATTTAATTAT
1 TTATTTAATTAT
63911 ATAGGTTCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTATTTAATTATG
Found at i:65010 original size:13 final size:14
Alignment explanation
Indices: 64994--65029 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
64984 CAATCTCATA
64994 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
65007 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
65020 TCTC-ATTTCA
1 TCTCAATTTCA
65030 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:65019 original size:18 final size:19
Alignment explanation
Indices: 64981--65021 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
64971 TGGTTCATGT
64981 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
65000 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
65018 TTTC
1 TTTC
65022 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:65187 original size:39 final size:39
Alignment explanation
Indices: 65144--65278 Score: 114
Period size: 39 Copynumber: 3.4 Consensus size: 39
65134 ACAAATATGG
*
65144 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGATAGTTCGAAGAAATATTTGA
* * * * *
65183 CACCCAGTGTCTCATCGGCCTAG-TCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTTCGAAGAAATATTTGA
* * * *
65221 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATATTGTGA
1 CACCCAGTGCCTCATCGGA--TAGTTCGAAGAAATATT-TGA
*
65262 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
65279 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
38 18 0.25
39 34 0.47
40 5 0.07
41 16 0.22
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTTCGAAGAAATATTTGA
Found at i:65549 original size:18 final size:19
Alignment explanation
Indices: 65518--65556 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
65508 TTTCATTTCA
65518 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
65537 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
65555 AT
1 AT
65557 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:66881 original size:5 final size:5
Alignment explanation
Indices: 66871--66927 Score: 62
Period size: 5 Copynumber: 11.0 Consensus size: 5
66861 TTACTTATTT
* *
66871 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
66919 ATAT- ATATA
1 ATATA ATATA
66928 TTTTAACACA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 7 0.16
7 4 0.09
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:66887 original size:12 final size:12
Alignment explanation
Indices: 66870--66925 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
66860 TTTACTTATT
66870 TATATAATATAA
1 TATATAATATAA
66882 TATATAATATAATA
1 TATATAATAT-A-A
66896 TACTATAATATAA
1 TA-TATAATATAA
*
66909 TA-ATAATTTAA
1 TATATAATATAA
66920 TATATA
1 TATATA
66926 TATTTTAACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:66940 original size:26 final size:26
Alignment explanation
Indices: 66872--66927 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
66862 TACTTATTTA
*
66872 TATAATATAATATATAATATAATATAC
1 TATAATATAACA-ATAATATAATATAC
* *
66899 TATAATATAATAATAATTTAATATA-
1 TATAATATAACAATAATATAATATAC
66924 TATA
1 TATA
66928 TTTTAACACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 4 0.14
26 12 0.43
27 12 0.43
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
TATAATATAACAATAATATAATATAC
Found at i:68849 original size:12 final size:12
Alignment explanation
Indices: 68832--68863 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
68822 CGGCTCAATG
68832 CATTGGCCACCA
1 CATTGGCCACCA
68844 CATTGGCCACCA
1 CATTGGCCACCA
68856 CATTGGCC
1 CATTGGCC
68864 TTACCAAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.22, C:0.41, G:0.19, T:0.19
Consensus pattern (12 bp):
CATTGGCCACCA
Found at i:69029 original size:16 final size:17
Alignment explanation
Indices: 68983--69036 Score: 51
Period size: 16 Copynumber: 3.2 Consensus size: 17
68973 TGTTCGGATA
68983 TATATTTATAATTT-TAT
1 TATA-TTATAATTTATAT
* *
69000 TATATTGTGA-TTATAT
1 TATATTATAATTTATAT
69016 TATATTAT-ATTTATACT
1 TATATTATAATTTATA-T
69033 TATA
1 TATA
69037 ATCTCTCTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 3 0.10
16 19 0.61
17 9 0.29
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (17 bp):
TATATTATAATTTATAT
Found at i:70551 original size:18 final size:18
Alignment explanation
Indices: 70528--70562 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
70518 AAAACTCTAT
70528 TTCTAATAAATATTAAAA
1 TTCTAATAAATATTAAAA
*
70546 TTCTAATATATATTAAA
1 TTCTAATAAATATTAAA
70563 TTTATTCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (18 bp):
TTCTAATAAATATTAAAA
Found at i:85657 original size:130 final size:126
Alignment explanation
Indices: 85343--85784 Score: 467
Period size: 130 Copynumber: 3.5 Consensus size: 126
85333 CCCAAACGGT
* * * ** * *
85343 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAA-TTTCCAAATATGAAACATTGCCTCAT
1 AAAT-GAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCAT
* * * * * *
85407 TTTAATTTGAGAAAACATGGACGAAAGTTCAAAAGGATATTCTGTATTTTAGTCGAATAGAA
65 TTTATTTTAAGAAAACATGGACGAAATTTCAAAAGGATATTCCGTATTTTAGTCGAAGAAAA
* * * * * ** *
85469 AATTGAAGCCCAGCATGATTGGGCACGA-CTCCCCAAACT-TCCAAGCACGAAATATTGCCTCGT
1 AAATGAAACCCAGCACGATTGGGCACGATCT-CTCAAACTCCCCAAATACGAAATATTGCCTCAT
* * *
85532 TTTATTTTAAGAAAACGTGGATGAAAATTTCAAAAAAGGATATTCCATATTTTAGTCGAACGAAA
65 TTTATTTTAAGAAAACATGGACG-AAATTTC--AAAAGGATATTCCGTATTTTAGTCGAA-GAAA
85597 A
126 A
*
85598 AAATGAAACCCAGCACAATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCATT
1 AAATGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCA-T
* *** * *
85663 TAATTTTTTTTTTAAAAAATGGACGAAATTTCCAAAGGATATTCCGTATTTTAGTCGAATGAAAA
65 T--TTATTTTAAGAAAACATGGACGAAATTTCAAAAGGATATTCCGTATTTTAGTCGAA-GAAAA
* * *
85728 GAACGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAGATATT
1 AAATGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATT
85785 TCCTTATGTT
Statistics
Matches: 261, Mismatches: 44, Indels: 18
0.81 0.14 0.06
Matches are distributed among these distances:
124 1 0.00
125 63 0.24
126 10 0.04
128 25 0.10
129 34 0.13
130 104 0.40
131 2 0.01
132 7 0.03
133 15 0.06
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (126 bp):
AAATGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCATT
TTATTTTAAGAAAACATGGACGAAATTTCAAAAGGATATTCCGTATTTTAGTCGAAGAAAA
Found at i:87792 original size:89 final size:88
Alignment explanation
Indices: 87686--87883 Score: 281
Period size: 89 Copynumber: 2.2 Consensus size: 88
87676 CCTGCTCCAT
** *
87686 TGCAACTTCAAGG-AGATAAGGTTGGTAGCTAAAATCTGCTCCATAGCCGAAACATGGAGATAAG
1 TGCAACTTC-AGGAAGATAAGACTAGTAGCTAAAATCTGCTCCATAGCCGAAACATGGAGATAAG
*
87750 ATCTGTAACTTTTCAGTCTGCTTCC
65 ATCTGTAA-TTTTCAGCCTGCTTCC
* * * *
87775 TGCAACTTCAGGAAGATAAGACTAGTAGCTGAGATCTGCTCCATAGCTGATACATGGAGATAAGA
1 TGCAACTTCAGGAAGATAAGACTAGTAGCTAAAATCTGCTCCATAGCCGAAACATGGAGATAAGA
*
87840 TTTGTAATTTTCAGCCTGCTTCC
66 TCTGTAATTTTCAGCCTGCTTCC
*
87863 TGCAACTTCAAGAAGATAAGA
1 TGCAACTTCAGGAAGATAAGA
87884 TTTGCTATCT
Statistics
Matches: 98, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
88 38 0.39
89 60 0.61
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (88 bp):
TGCAACTTCAGGAAGATAAGACTAGTAGCTAAAATCTGCTCCATAGCCGAAACATGGAGATAAGA
TCTGTAATTTTCAGCCTGCTTCC
Found at i:87793 original size:45 final size:44
Alignment explanation
Indices: 87743--88017 Score: 153
Period size: 45 Copynumber: 6.2 Consensus size: 44
87733 CGAAACATGG
*
87743 AGATAAGATCTGTAACTTTTCAGTCTGCTTCCTGCAACTTCAGGA
1 AGATAAGATCTGTAA-TCTTCAGTCTGCTTCCTGCAACTTCAGGA
* * * *
87788 AGATAAGA-CTAGT-AGC-TGAGATCTGC-TCCATAGCTGA-TACATGG-
1 AGATAAGATCT-GTAATCTTCAG-TCTGCTTCC-T-GC-AACTTCA-GGA
* * * *
87832 AGATAAGATTTGTAATTTTCAGCCTGCTTCCTGCAACTTCAAGA
1 AGATAAGATCTGTAATCTTCAGTCTGCTTCCTGCAACTTCAGGA
* * *
87876 AGATAAGATTTGCT-ATCTTCAGTCTGCTCCACTGTAACTTCA-GA
1 AGATAAGATCTG-TAATCTTCAGTCTGCTTC-CTGCAACTTCAGGA
* * *
87920 GAGATAAGA-CTTGCT-ATCTTCAGTCTGCTCCACAGCAACTTCAGGG
1 -AGATAAGATC-TG-TAATCTTCAGTCTGCTTC-CTGCAACTTCAGGA
* *
87966 AGATAAG-GCTTGCT-ATCTTCAGTCTGCTCCACTGCAACTTCAAGG-
1 AGATAAGATC-TG-TAATCTTCAGTCTGCTTC-CTGCAACTTC-AGGA
88011 AGATAAG
1 AGATAAG
88018 GTTGGTGGTT
Statistics
Matches: 189, Mismatches: 22, Indels: 38
0.76 0.09 0.15
Matches are distributed among these distances:
42 6 0.03
43 8 0.04
44 50 0.26
45 115 0.61
46 10 0.05
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (44 bp):
AGATAAGATCTGTAATCTTCAGTCTGCTTCCTGCAACTTCAGGA
Found at i:87902 original size:89 final size:89
Alignment explanation
Indices: 87720--88171 Score: 320
Period size: 89 Copynumber: 5.1 Consensus size: 89
87710 GTAGCTAAAA
* * *
87720 TCTGCTCCATAGCCGAAACATGGAGATAAGATCTGTAACTTTTCAGTCTGCTTCCTGCAACTTCA
1 TCTGCTCCATAGCTGATACATGGAGATAAGATTTGTAA-TTTTCAGTCTGCTTCCTGCAACTTCA
* * *
87785 GGAAGATAAGACTAG-TAGC-TGAG
65 GGAAGATAAGACTTGCTATCTTCAG
*
87808 ATCTGCTCCATAGCTGATACATGGAGATAAGATTTGTAATTTTCAGCCTGCTTCCTGCAACTTCA
1 -TCTGCTCCATAGCTGATACATGGAGATAAGATTTGTAATTTTCAGTCTGCTTCCTGCAACTTCA
* *
87873 AGAAGATAAGATTTGCTATCTTCAG
65 GGAAGATAAGACTTGCTATCTTCAG
* * * * * *
87898 TCTGCTCCACT-G-TAACTTCA-GAGAGATAAGACTTGCT-ATCTTCAGTCTGCTCCACAGCAAC
1 TCTGCTCCA-TAGCTGA-TACATG-GAGATAAGATTTG-TAATTTTCAGTCTGCTTC-CTGCAAC
* *
87959 TTCAGGGAGATAAGGCTTGCTATCTTCAG
61 TTCAGGAAGATAAGACTTGCTATCTTCAG
* * * * * ** ** * *
87988 TCTGCTCCACT-GC-AACTTCAAGGAGATAAGGTTGGT-GGTTGAAATCTGC-TCCATAGCCGA-
1 TCTGCTCCA-TAGCTGA-TACATGGAGATAAGATTTGTAATTTTCAGTCTGCTTCC-T-G-CAAC
* * * ** * **
88048 TACATGTAGATAAGACCCGCCA-CTTTTG
61 TTCAGGAAGATAAGACTTGCTATCTTCAG
* * *
88076 ATCTGCTCCATAG-TCGATACATGGAGATAAGATCTGTAA-TTTCGGTTTGCTTCCTGCAACTTC
1 -TCTGCTCCATAGCT-GATACATGGAGATAAGATTTGTAATTTTCAGTCTGCTTCCTGCAACTTC
*
88139 AGGAAGATAAGACTTGCTATTTTCAG
64 AGGAAGATAAGACTTGCTATCTTCAG
88165 TCTGCTC
1 TCTGCTC
88172 TACTGCAACT
Statistics
Matches: 280, Mismatches: 63, Indels: 41
0.73 0.16 0.11
Matches are distributed among these distances:
87 3 0.01
88 70 0.25
89 135 0.48
90 71 0.25
91 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (89 bp):
TCTGCTCCATAGCTGATACATGGAGATAAGATTTGTAATTTTCAGTCTGCTTCCTGCAACTTCAG
GAAGATAAGACTTGCTATCTTCAG
Found at i:88018 original size:45 final size:45
Alignment explanation
Indices: 87830--88017 Score: 247
Period size: 45 Copynumber: 4.2 Consensus size: 45
87820 GCTGATACAT
* * * *
87830 GGAGATAAGATTTG-TAATTTTCAGCCTGCTTC-CTGCAACTTCAA
1 GGAGATAAGACTTGCT-ATCTTCAGTCTGCTCCACTGCAACTTCAA
* * *
87874 GAAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGTAACTTC-A
1 GGAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAA
* *
87918 GAGAGATAAGACTTGCTATCTTCAGTCTGCTCCACAGCAACTTCAG
1 G-GAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAA
*
87964 GGAGATAAGGCTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAA
1 GGAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAA
88009 GGAGATAAG
1 GGAGATAAG
88018 GTTGGTGGTT
Statistics
Matches: 127, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
44 28 0.22
45 98 0.77
46 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (45 bp):
GGAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAA
Found at i:88158 original size:267 final size:266
Alignment explanation
Indices: 87807--88775 Score: 967
Period size: 268 Copynumber: 3.6 Consensus size: 266
87797 TAGTAGCTGA
* * *
87807 GATCTGCTCCATAGCTGATACATGGAGATAAGATTTGTAATTTTCAGCCTGCTTCCTGCAACTTC
1 GATCTGCTCCATAGC-GATACATGGAGATAAGATCTGTAACTTTCAGTCTGCTTCCTGCAACTTC
* * *
87872 AAGAAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTTG-CTA
65 AGGAAGATAAGACTTGCTATTTTCAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTTGTC-A
* *
87936 TCTTC-AGTCTGCTCCACAG-CAACTTCAGGGAGATAAG-GCTTGCT-ATCTTCAGTCTGCTCCA
129 TCTTCGA-TCTGCTCCACAGCCAA-TACAGGGAGATAAGATC-TG-TAATCTTCAGTCTGCTCC-
** * * * *
87997 CTGCAACTTCAAGG-AGATAAGGTTGGTGGTTGAAATCTGCTCCATAGCCGATACATGTAGATAA
189 CTGCAACTTC-AGGAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAA
88061 GACCCGCCACTTT-T
253 GACCCGCCA-TTTCT
* *
88075 GATCTGCTCCATAGTCGATACATGGAGATAAGATCTGTAA-TTTCGGTTTGCTTCCTGCAACTTC
1 GATCTGCTCCATAG-CGATACATGGAGATAAGATCTGTAACTTTCAGTCTGCTTCCTGCAACTTC
* *
88139 AGGAAGATAAGACTTGCTATTTTCAGTCTGCTCTACTGCAACTTCAGAGAGATAAGACTTGTCAT
65 AGGAAGATAAGACTTGCTATTTTCAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTTGTCAT
* ** * * * * *
88204 TTTCGATCTGCTTTATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCA
130 CTTCGATCTGCTCCACAGCCAATACAGGGAGATAAGATCTGT-AATCTTCAGTCTGCTCCCTGCA
*
88269 ACTTCAGGAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCG
194 ACTTCAGGAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACCCG
88334 CCATTTCT
259 CCATTTCT
* * *
88342 AATCTGCTTCATAGCCGATACATGGAGATAAGATCTGTAACTTTCAGTCTGCTTCCTGCAACTTT
1 GATCTGCTCCATAG-CGATACATGGAGATAAGATCTGTAACTTTCAGTCTGCTTCCTGCAACTTC
* *
88407 AGGAAGATAAGACTTGCTATTTTTAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTCGTCAT
65 AGGAAGATAAGACTTGCTATTTTCAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTTGTCAT
* * * * * * *
88472 TTTCGATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCA
130 CTTCGATCTGCTCCACAGCCAATACAGGGAGATAAGATCTGT-AATCTTCAGTCTGCTCCCTGCA
* * ** ** ** * * * ** *
88537 ACTTTAAGAAGATAAGACTTCCTATCTTCAGTCTACTCCACT-G-CAACTTTAGGGAGATAAGAC
194 ACTTCAGGAAGATAAGAC-TAGTGGCTAAAATCTGCTCCA-TAGCCGA-TACATGGAGATAAGAC
** *
88600 TTGTCATTT-T
256 CCGCCATTTCT
* * * * * *
88610 CGATCTACTCTATAGCTGGTACATGAAGATAATATCTGTAACTTTTCGGTCTGCTTCCTGCAACT
1 -GATCTGCTCCATAGC-GATACATGGAGATAAGATCTGTAAC-TTTCAGTCTGCTTCCTGCAACT
* * * ** * * * * *
88675 TCAGGAAGATAAGACCTG-TATCTCCAACCTGCT-CTCTGCAACTTCAGGGAGATAAGGCTGGT-
63 TCAGGAAGATAAGACTTGCTATTTTCAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTTGTC
** ** * *
88737 GGCTTAAATCTGCTCCATAGCCGATACAGGGAGATAAGA
128 ATCTTCGATCTGCTCCACAGCCAATACAGGGAGATAAGA
88776 CCCGCCATTT
Statistics
Matches: 603, Mismatches: 82, Indels: 33
0.84 0.11 0.05
Matches are distributed among these distances:
266 7 0.01
267 237 0.39
268 244 0.40
269 77 0.13
270 38 0.06
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (266 bp):
GATCTGCTCCATAGCGATACATGGAGATAAGATCTGTAACTTTCAGTCTGCTTCCTGCAACTTCA
GGAAGATAAGACTTGCTATTTTCAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTTGTCATC
TTCGATCTGCTCCACAGCCAATACAGGGAGATAAGATCTGTAATCTTCAGTCTGCTCCCTGCAAC
TTCAGGAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACCCGCC
ATTTCT
Found at i:88181 original size:45 final size:45
Alignment explanation
Indices: 88100--88730 Score: 175
Period size: 45 Copynumber: 14.2 Consensus size: 45
88090 CGATACATGG
* * *
88100 AGATAAGA-TCTGTAA-TTTCGGTTTGCT-TCCTGCAACTTCAGGA
1 AGATAAGACT-TGTAATTTTCAGTCTGCTCTACTGCAACTTCAGGA
88143 AGATAAGACTTGCT-ATTTTCAGTCTGCTCTACTGCAACTTCA-GA
1 AGATAAGACTTG-TAATTTTCAGTCTGCTCTACTGCAACTTCAGGA
* * * *
88187 GAGATAAGACTTGTCATTTTC-GATCTGCTTTA-TAGCCGA-TACATGG-
1 -AGATAAGACTTGTAATTTTCAG-TCTGCTCTACT-G-CAACTTCA-GGA
*
88233 AGATAAGA-TCTGTAAATTTTCAGTCTGCT-TCCTGCAACTTCAGGA
1 AGATAAGACT-TGT-AATTTTCAGTCTGCTCTACTGCAACTTCAGGA
* *** ** * * * *
88278 AGATAAGACTAGT-GGCTAAAATCTGCTCCA-TAGCCGA-TACATGG-
1 AGATAAGACTTGTAATTTTCAGTCTGCTCTACT-G-CAACTTCA-GGA
* ** * * *
88322 AGATAAGACTCGCCA-TTTCTAATCTGCT-T-CATAGCCGA-TACATGG-
1 AGATAAGACTTGTAATTTTC-AGTCTGCTCTAC-T-G-CAACTTCA-GGA
* * *
88367 AGATAAGA-TCTGTAACTTTCAGTCTGCT-TCCTGCAACTTTAGGA
1 AGATAAGACT-TGTAATTTTCAGTCTGCTCTACTGCAACTTCAGGA
* * *
88411 AGATAAGACTTGCT-ATTTTTAGTCTGCTCCACTGTAACTTCA-GA
1 AGATAAGACTTG-TAATTTTCAGTCTGCTCTACTGCAACTTCAGGA
* * * * * *
88455 GAGATAAGACTCGTCATTTTC-GATCTACTCCA-TAGCCGA-TACATGG-
1 -AGATAAGACTTGTAATTTTCAG-TCTGCTCTACT-G-CAACTTCA-GGA
* * *
88501 AGATAAGA-TCTGTAAATTTTCAGTCTGCT-TCCTGCAACTTTAAGA
1 AGATAAGACT-TGT-AATTTTCAGTCTGCTCTACTGCAACTTCAGGA
* * * * * *
88546 AGATAAGACTTCCT-ATCTTCAGTCTACTCCACTGCAACTTTAGGG
1 AGATAAGACTT-GTAATTTTCAGTCTGCTCTACTGCAACTTCAGGA
* * *** * *
88591 AGATAAGACTTGTCATTTTC-GATCTACTCTA-TAGCTGGTACATGA
1 AGATAAGACTTGTAATTTTCAG-TCTGCTCTACT-GCAACTTCAGGA
* * *
88636 AGATAATA-TCTGTAACTTTTCGGTCTGCT-TCCTGCAACTTCAGGA
1 AGATAAGACT-TGTAA-TTTTCAGTCTGCTCTACTGCAACTTCAGGA
* * * ** *
88681 AGATAAGACCTGT-ATCTCCAACCTGCTCT-CTGCAACTTCAGGG
1 AGATAAGACTTGTAATTTTCAGTCTGCTCTACTGCAACTTCAGGA
88724 AGATAAG
1 AGATAAG
88731 GCTGGTGGCT
Statistics
Matches: 439, Mismatches: 90, Indels: 118
0.68 0.14 0.18
Matches are distributed among these distances:
43 52 0.12
44 91 0.21
45 244 0.56
46 47 0.11
47 5 0.01
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (45 bp):
AGATAAGACTTGTAATTTTCAGTCTGCTCTACTGCAACTTCAGGA
Found at i:88374 original size:134 final size:134
Alignment explanation
Indices: 87807--88689 Score: 821
Period size: 134 Copynumber: 6.6 Consensus size: 134
87797 TAGTAGCTGA
* * *
87807 GATCTGCTCCATAGCTGATACATGGAGATAAGATTTGTAATTTTCAGCCTGCTTCCTGCAACTTC
1 GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTC
* * * * * * * *
87872 AAGAAGATAAGATTTGCTA-TCTTCAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTTGCTA
66 AGGAAGATAAGACTTGCTAGT-TTAAATCTGCTCCACTGCAACTACAGAGAGATAAGACTCGCCA
*
87936 TCTTC
130 TTTTC
* * * * * * *
87941 -AGTCTGCTCCACAG-CAACTTCAGGGAGATAAG-GCTTGCT-ATCTTCAGTCTGCTCCACTGCA
1 GA-TCTGCTCCATAGCCGA-TACATGGAGATAAGATC-TG-TAATTTTCAGTCTGCTTC-CTGCA
* * * * * *
88002 ACTTCAAGG-AGATAAG-GTTGGTGGTTGAAATCTGCTCCA-TAGCCGA-TACATG-TAGATAAG
61 ACTTC-AGGAAGATAAGACTTGCTAGTTTAAATCTGCTCCACT-G-CAACTACA-GAGAGATAAG
*
88062 ACCCGCCACTTTT-
122 ACTCGCCA-TTTTC
* * *
88075 GATCTGCTCCATAGTCGATACATGGAGATAAGATCTGTAA-TTTCGGTTTGCTTCCTGCAACTTC
1 GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTC
* * * * * * *
88139 AGGAAGATAAGACTTGCTATTTTCAGTCTGCTCTACTGCAACTTCAGAGAGATAAGACTTGTCAT
66 AGGAAGATAAGACTTGCTAGTTTAAATCTGCTCCACTGCAACTACAGAGAGATAAGACTCGCCAT
88204 TTTC
131 TTTC
**
88208 GATCTGCTTTATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCAACTT
1 GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGT-AATTTTCAGTCTGCTTCCTGCAACTT
* * * * *
88273 CAGGAAGATAAGACTAG-TGGCTAAAATCTGCTCCA-TAGCCGA-TACATG-GAGATAAGACTCG
65 CAGGAAGATAAGACTTGCTAGTTTAAATCTGCTCCACT-G-CAACTACA-GAGAGATAAGACTCG
88334 CCA-TTTC
127 CCATTTTC
* * *
88341 TAATCTGCTTCATAGCCGATACATGGAGATAAGATCTGTAACTTTCAGTCTGCTTCCTGCAACTT
1 -GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTT
* * * * * * *
88406 TAGGAAGATAAGACTTGCTATTTTTAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTCGTCA
65 CAGGAAGATAAGACTTGCTAGTTTAAATCTGCTCCACTGCAACTACAGAGAGATAAGACTCGCCA
88471 TTTTC
130 TTTTC
*
88476 GATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCAACTT
1 GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGT-AATTTTCAGTCTGCTTCCTGCAACTT
* * * * * * ** * * *
88541 TAAGAAGATAAGACTTCCTA-TCTTCAGTCTACTCCACTGCAACTTTAGGGAGATAAGACTTGTC
65 CAGGAAGATAAGACTTGCTAGT-TTAAATCTGCTCCACTGCAACTACAGAGAGATAAGACTCGCC
88605 ATTTTC
129 ATTTTC
* * * * * * *
88611 GATCTACTCTATAGCTGGTACATGAAGATAATATCTGTAACTTTTCGGTCTGCTTCCTGCAACTT
1 GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAA-TTTTCAGTCTGCTTCCTGCAACTT
88676 CAGGAAGATAAGAC
65 CAGGAAGATAAGAC
88690 CTGTATCTCC
Statistics
Matches: 614, Mismatches: 100, Indels: 69
0.78 0.13 0.09
Matches are distributed among these distances:
131 3 0.00
132 24 0.04
133 127 0.21
134 232 0.38
135 226 0.37
136 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (134 bp):
GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTC
AGGAAGATAAGACTTGCTAGTTTAAATCTGCTCCACTGCAACTACAGAGAGATAAGACTCGCCAT
TTTC
Found at i:88473 original size:268 final size:267
Alignment explanation
Indices: 87808--88555 Score: 1026
Period size: 268 Copynumber: 2.8 Consensus size: 267
87798 AGTAGCTGAG
* * *
87808 ATCTGCTCCATAGCTGATACATGGAGATAAGATTTGTAATTTTCAGCCTGCTTCCTGCAACTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAA-TTTCAGTCTGCTTCCTGCAACTTCA
* * *
87873 AGAAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTTG-CTAT
65 GGAAGATAAGACTTGCTATTTTCAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTTGTC-AT
* * * * * * * *
87937 CTTC-AGTCTGCTCCACAG-CAACTTCAGGGAGATAAG-GCTTGCT--ATCTTCAGTCTGCTCCA
129 TTTCGA-TCTGCTCCATAGCCGA-TACATGGAGATAAGATC-TG-TAAATTTTCAGTCTGCTTC-
** * * * *
87997 CTGCAACTTCAAGG-AGATAAGGTTGGTGGTTGAAATCTGCTCCATAGCCGATACATGTAGATAA
189 CTGCAACTTC-AGGAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAA
*
88061 GACCCGCCACTTTTG
253 GACCCGCCACTTTTA
* * *
88076 ATCTGCTCCATAGTCGATACATGGAGATAAGATCTGTAATTTCGGTTTGCTTCCTGCAACTTCAG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTCAGTCTGCTTCCTGCAACTTCAG
* *
88141 GAAGATAAGACTTGCTATTTTCAGTCTGCTCTACTGCAACTTCAGAGAGATAAGACTTGTCATTT
66 GAAGATAAGACTTGCTATTTTCAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTTGTCATTT
**
88206 TCGATCTGCTTTATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCAAC
131 TCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCAAC
*
88271 TTCAGGAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCC
196 TTCAGGAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACCCGCC
88336 A-TTTCTA
261 ACTTT-TA
* *
88343 ATCTGCTTCATAGCCGATACATGGAGATAAGATCTGTAACTTTCAGTCTGCTTCCTGCAACTTTA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAA-TTTCAGTCTGCTTCCTGCAACTTCA
* *
88408 GGAAGATAAGACTTGCTATTTTTAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTCGTCATT
65 GGAAGATAAGACTTGCTATTTTCAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTTGTCATT
*
88473 TTCGATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCAA
130 TTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCAA
* *
88538 CTTTAAGAAGATAAGACT
195 CTTCAGGAAGATAAGACT
88556 TCCTATCTTC
Statistics
Matches: 428, Mismatches: 43, Indels: 18
0.88 0.09 0.04
Matches are distributed among these distances:
266 7 0.02
267 205 0.48
268 216 0.50
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (267 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTCAGTCTGCTTCCTGCAACTTCAG
GAAGATAAGACTTGCTATTTTCAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTTGTCATTT
TCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCAAC
TTCAGGAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACCCGCC
ACTTTTA
Found at i:88720 original size:268 final size:267
Alignment explanation
Indices: 87816--88775 Score: 940
Period size: 267 Copynumber: 3.6 Consensus size: 267
87806 AGATCTGCTC
* * * * * *
87816 CATAGCTGATACATGGAGATAAGATTTGTAATTTTCAGCCTGCTTCCTGCAACTTCAAGAAGATA
1 CATAGCCGATACATGGAGATAAGATCTGTAACTTTCGGTCTGCTTCCTGCAACTTCAGGAAGATA
* * * * * *
87881 AGATTTGCTATCTTCAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTTG-CTATCTTC-AGT
66 AGACTTGCTATTTTCAGTCTGCT-CTCTGCAACTTCAGAGAGATAAGACTCGTC-ATTTTCGA-T
* * * * * * *
87944 CTGCTCCACAG-CAACTTCAGGGAGATAAG-GCTTGCT--ATCTTCAGTCTGCTCCACTGCAACT
128 CTGCTCCATAGCCGA-TACATGGAGATAAGATC-TG-TAAATTTTCAGTCTGCTTC-CTGCAACT
* ** ** * * * * * * * *
88005 TCAAGGAGATAAGGTTGGTGGTTGAAATCTGCTCCATAGCCGATACATGTAGATAAGACCCGCCA
189 TCAAGAAGATAAGACTACTAGCTAAAATCTACTCCATAGCCAATACAGGGAGATAAGACTCGCCA
* * *
88070 CTTT-TGATCTGCTC
254 -TTTCTAATCTACTT
* *
88084 CATAGTCGATACATGGAGATAAGATCTGTAA-TTTCGGTTTGCTTCCTGCAACTTCAGGAAGATA
1 CATAGCCGATACATGGAGATAAGATCTGTAACTTTCGGTCTGCTTCCTGCAACTTCAGGAAGATA
*
88148 AGACTTGCTATTTTCAGTCTGCTCTACTGCAACTTCAGAGAGATAAGACTTGTCATTTTCGATCT
66 AGACTTGCTATTTTCAGTCTGCTCT-CTGCAACTTCAGAGAGATAAGACTCGTCATTTTCGATCT
** *
88213 GCTTTATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCAACTTCAGGA
130 GCTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCAACTTCAAGA
* * * * *
88278 AGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTA
195 AGATAAGACTACTAGCTAAAATCTACTCCATAGCCAATACAGGGAGATAAGACTCGCCATTTCTA
*
88343 ATCTGCTT
260 ATCTACTT
* *
88351 CATAGCCGATACATGGAGATAAGATCTGTAACTTTCAGTCTGCTTCCTGCAACTTTAGGAAGATA
1 CATAGCCGATACATGGAGATAAGATCTGTAACTTTCGGTCTGCTTCCTGCAACTTCAGGAAGATA
* * *
88416 AGACTTGCTATTTTTAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTCGTCATTTTCGATCT
66 AGACTTGCTATTTTCAGTCTGCT-CTCTGCAACTTCAGAGAGATAAGACTCGTCATTTTCGATCT
* *
88481 ACTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCAACTTTAAGA
130 GCTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCAACTTCAAGA
* * ** * ** * *
88546 AGATAAGACTTCCTATCTTCAGTCTACTCCACT-G-CAACTTTAGGGAGATAAGACTTGTCATTT
195 AGATAAGAC-TACTAGCTAAAATCTACTCCA-TAGCCAA-TACAGGGAGATAAGACTCGCCATTT
*
88609 -TCGATCTAC-T
257 CT-AATCTACTT
* * * *
88619 CTATAGCTGGTACATGAAGATAATATCTGTAACTTTTCGGTCTGCTTCCTGCAACTTCAGGAAGA
1 C-ATAGCCGATACATGGAGATAAGATCTGTAAC-TTTCGGTCTGCTTCCTGCAACTTCAGGAAGA
* * * ** * * * *** **
88684 TAAGACCTG-TATCTCCAACCTGCTCTCTGCAACTTCAGGGAGATAAGGCTGGT-GGCTTAAATC
64 TAAGACTTGCTATTTTCAGTCTGCTCTCTGCAACTTCAGAGAGATAAGACTCGTCATTTTCGATC
*
88747 TGCTCCATAGCCGATACAGGGAGATAAGA
129 TGCTCCATAGCCGATACATGGAGATAAGA
88776 CCCGCCATTT
Statistics
Matches: 591, Mismatches: 85, Indels: 33
0.83 0.12 0.05
Matches are distributed among these distances:
266 5 0.01
267 237 0.40
268 234 0.40
269 77 0.13
270 38 0.06
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (267 bp):
CATAGCCGATACATGGAGATAAGATCTGTAACTTTCGGTCTGCTTCCTGCAACTTCAGGAAGATA
AGACTTGCTATTTTCAGTCTGCTCTCTGCAACTTCAGAGAGATAAGACTCGTCATTTTCGATCTG
CTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCAACTTCAAGAA
GATAAGACTACTAGCTAAAATCTACTCCATAGCCAATACAGGGAGATAAGACTCGCCATTTCTAA
TCTACTT
Found at i:88998 original size:64 final size:64
Alignment explanation
Indices: 88891--89012 Score: 167
Period size: 64 Copynumber: 1.9 Consensus size: 64
88881 TATATCTATA
* * *
88891 CTTATGCCAAATAACTAGGATGCTATGGTCGAAATAATCCAAATGCTCCTACCTAGATGTGATG
1 CTTATGCCAAATAACTAGGATGCTATGATCGAAAGAATCCAAATGCTCCTAACTAGATGTGATG
* *
88955 CTTATGTCAAATAATTAGGATGCTATGATC-AAGACGAAT-CAAATGCTCCTAACTAGAT
1 CTTATGCCAAATAACTAGGATGCTATGATCGAA-A-GAATCCAAATGCTCCTAACTAGAT
89013 TTACTATGAA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
63 2 0.04
64 46 0.90
65 3 0.06
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (64 bp):
CTTATGCCAAATAACTAGGATGCTATGATCGAAAGAATCCAAATGCTCCTAACTAGATGTGATG
Found at i:100282 original size:129 final size:128
Alignment explanation
Indices: 99930--100366 Score: 492
Period size: 129 Copynumber: 3.4 Consensus size: 128
99920 AACGGTAAAT
* * * * ** *
99930 CGAAACCCAGCACGATGGGGCACGATTTATCGAA-TTTCCAAATACGAAACATTGCCTCATTTTA
1 CGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCATTTTA
* * ** * *
99994 A-TTTGAGAAAACATGGACGAAACTTCAAAAGGATATTTTGTATTTTAGTCGAATG-GAAAAT
66 ATTTTAAGAAAACATGGACGAAATTTCAAAAGGATATTCCGTATTTTAGTCGAATGAAAAAAA
* * * * ** *
100055 TGAAGCCCAGCACGATTGGGCACGA-CTCCCCAAACT-TCCAAGCACGAAATATTGCCTCGTTTT
1 CGAAACCCAGCACGATTGGGCACGATCT-CTCAAACTCCCCAAATACGAAATATTGCCTCATTTT
* * * *
100118 -ATTTTAAGAAAACGTGGATGAAAATTTCAAAAAAGGATATTCCATATTTTAGTCGAACGAAAAA
65 AATTTTAAGAAAACATGGACG-AAATTTC--AAAAGGATATTCCGTATTTTAGTCGAATGAAAAA
100182 AA
127 AA
100184 CGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCATTTTA
1 CGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCATTTTA
*** * *
100249 ATTTTTTTTTAAAA-ATGGACGAAATTTCCAAAGGATATTCCGTATTTTAGTCGAATGAAAAGAA
66 A--TTTTAAGAAAACATGGACGAAATTTCAAAAGGATATTCCGTATTTTAGTCGAATGAAAAAAA
* *
100313 CGAAACTCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAGATATT
1 CGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATT
100367 TCCTTATGTT
Statistics
Matches: 261, Mismatches: 39, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
124 2 0.01
125 63 0.24
126 7 0.03
128 25 0.10
129 118 0.45
130 25 0.10
131 8 0.03
132 5 0.02
133 8 0.03
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (128 bp):
CGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCATTTTA
ATTTTAAGAAAACATGGACGAAATTTCAAAAGGATATTCCGTATTTTAGTCGAATGAAAAAAA
Found at i:103837 original size:23 final size:23
Alignment explanation
Indices: 103811--103855 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
103801 CAAACCTGTG
*
103811 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
103834 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
103856 TTGAATTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:112952 original size:17 final size:17
Alignment explanation
Indices: 112932--112965 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
112922 TTATATTAAT
*
112932 TAAATAAAATAAGTAAA
1 TAAATAAAATAAATAAA
112949 TAAATAAAATAAATAAA
1 TAAATAAAATAAATAAA
112966 GACAAATGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
TAAATAAAATAAATAAA
Found at i:113109 original size:16 final size:16
Alignment explanation
Indices: 113061--113114 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
113051 ATTTACTATT
113061 TATAA-AAGATATTTA
1 TATAATAAGATATTTA
*
113076 T-TAATTAAG-TAATTA
1 TATAA-TAAGATATTTA
*
113091 TATTATAAGATATTTA
1 TATAATAAGATATTTA
113107 TATAATAA
1 TATAATAA
113115 ATAAATTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
14 3 0.10
15 11 0.35
16 17 0.55
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (16 bp):
TATAATAAGATATTTA
Found at i:113910 original size:15 final size:16
Alignment explanation
Indices: 113890--113920 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
113880 TAATATAAAG
113890 TGAATTGA-AATATAT
1 TGAATTGAGAATATAT
113905 TGAATTGAGAATATAT
1 TGAATTGAGAATATAT
113921 CTGATTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.39
Consensus pattern (16 bp):
TGAATTGAGAATATAT
Found at i:114305 original size:18 final size:18
Alignment explanation
Indices: 114282--114377 Score: 102
Period size: 18 Copynumber: 5.3 Consensus size: 18
114272 TAAATAAAGG
*
114282 TACTGAATAATTGATTAT
1 TACTGAATAAATGATTAT
* * *
114300 TACTGAATAATTGACTGT
1 TACTGAATAAATGATTAT
* *
114318 TACTGAATAAATGACTGT
1 TACTGAATAAATGATTAT
*
114336 TATTGAATAAATGATTAT
1 TACTGAATAAATGATTAT
* * *
114354 TATTGAATAACTGATTAA
1 TACTGAATAAATGATTAT
114372 TACTGA
1 TACTGA
114378 TGACTGGCTG
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 69 1.00
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.40
Consensus pattern (18 bp):
TACTGAATAAATGATTAT
Found at i:124921 original size:34 final size:33
Alignment explanation
Indices: 124848--124929 Score: 76
Period size: 34 Copynumber: 2.4 Consensus size: 33
124838 TAAACCCATA
* *
124848 TCAGTCACAATATCAGTGTGGGCCCTAGCCCAGT
1 TCAGT-ACAGTATCAATGTGGGCCCTAGCCCAGT
* * *
124882 ACAGTAACAGTATCAATGTGGGCCTTAGTCC-GTT
1 TCAGT-ACAGTATCAATGTGGGCCCTAGCCCAG-T
*
124916 TCAGTATAGTATCA
1 TCAGTACAGTATCA
124930 GTAATGCACA
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
33 9 0.23
34 30 0.77
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (33 bp):
TCAGTACAGTATCAATGTGGGCCCTAGCCCAGT
Found at i:130135 original size:27 final size:27
Alignment explanation
Indices: 130105--130282 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
130095 ATATTGAGTC
* * * *
130105 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
130132 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
130159 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
130187 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
130214 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
130241 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
130268 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
130283 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:130244 original size:82 final size:81
Alignment explanation
Indices: 130126--130281 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
130116 TGCTATATAA
* *
130126 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
130191 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
130208 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
130272 CACTTAGTGC
65 CACTTAGTGC
130282 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:132166 original size:37 final size:37
Alignment explanation
Indices: 132125--132198 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 37
132115 ATTCCAATAA
*
132125 TAATA-TTATTTTAATAGT-TTTAATATTAAATTAAATT
1 TAATACTTATCTTAATAGTATTT--TATTAAATTAAATT
*
132162 TAATACTTATCTTAATAGTATTTTATTAATTTAAATT
1 TAATACTTATCTTAATAGTATTTTATTAAATTAAATT
132199 AAAGTGATGA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
37 18 0.55
38 12 0.36
39 3 0.09
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (37 bp):
TAATACTTATCTTAATAGTATTTTATTAAATTAAATT
Found at i:137574 original size:18 final size:20
Alignment explanation
Indices: 137537--137619 Score: 68
Period size: 19 Copynumber: 4.2 Consensus size: 20
137527 ATTACAAAAT
*
137537 AATTCAAAATAATTT-TTAA
1 AATTCAAAATAATTTATAAA
137556 AATTCAAAAT-ATTTATAAA
1 AATTCAAAATAATTTATAAA
137575 AATTTCAAAATTTATATTTA-AAA
1 AA-TTCAAAA--TA-ATTTATAAA
*
137598 AATTCTAAA-AATTCTA-AAA
1 AATTCAAAATAATT-TATAAA
137617 AAT
1 AAT
137620 ATATAAAAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
18 7 0.13
19 24 0.44
20 7 0.13
22 7 0.13
23 5 0.09
24 5 0.09
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (20 bp):
AATTCAAAATAATTTATAAA
Found at i:137593 original size:24 final size:24
Alignment explanation
Indices: 137564--137610 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
137554 AAAATTCAAA
*
137564 ATATTTATAAAAATT-TCAAAATTT
1 ATATTTA-AAAAATTCTAAAAATTT
137588 ATATTTAAAAAATTCTAAAAATT
1 ATATTTAAAAAATTCTAAAAATT
137611 CTAAAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (24 bp):
ATATTTAAAAAATTCTAAAAATTT
Found at i:137626 original size:20 final size:19
Alignment explanation
Indices: 137593--137630 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
137583 AATTTATATT
*
137593 TAAAAAATTCTAAAAATTC
1 TAAAAAATTATAAAAATTC
137612 TAAAAAATATATAAAAATT
1 TAAAAAAT-TATAAAAATT
137631 TATAATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (19 bp):
TAAAAAATTATAAAAATTC
Found at i:142025 original size:40 final size:40
Alignment explanation
Indices: 141970--142193 Score: 312
Period size: 40 Copynumber: 5.6 Consensus size: 40
141960 TATTCGGATG
* *
141970 ATATCCGGACTAAGTCCCGAAGGCATTTGTGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
142010 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
142050 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
142093 ATA-CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
142132 ATATCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
142172 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
142194 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 9, Indels: 15
0.88 0.05 0.08
Matches are distributed among these distances:
38 2 0.01
39 22 0.13
40 105 0.62
41 2 0.01
42 27 0.16
43 8 0.05
44 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:142124 original size:82 final size:81
Alignment explanation
Indices: 141970--142193 Score: 332
Period size: 82 Copynumber: 2.8 Consensus size: 81
141960 TATTCGGATG
* *
141970 ATATCCGGACTAAGTCCCGAAGGCATTTGTGC-TAG-TGACCATATCCGGGCTAAGTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTG-CTATATCCGGGCTAAGTCCCGAAGG
142033 CATTTGTGCTAGTGACT
65 CATTTGTGCTAGTGACT
*
142050 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATA-CCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--GTAGTTGCTATATCCGGGCTAAGTCCCGAAG
142114 GCATTTGTGCTAGTGACT
64 GCATTTGTGCTAGTGACT
* * *
142132 ATATCCGGGCTAAGACCCGAAGGCATGTGTGCG-AGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTGCTATATCCGGGCTAAGTCCCGAAGG
142194 TACTTGGGTT
Statistics
Matches: 132, Mismatches: 7, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
79 25 0.19
80 33 0.25
82 65 0.49
83 7 0.05
84 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (81 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTGCTATATCCGGGCTAAGTCCCGAAGGC
ATTTGTGCTAGTGACT
Found at i:149861 original size:40 final size:40
Alignment explanation
Indices: 149791--149994 Score: 306
Period size: 40 Copynumber: 5.1 Consensus size: 40
149781 TTATTCGATG
* *
149791 ATATCCGGACTAAGT-CCGAAGGCATTTGTGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
149830 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
149870 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
149910 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
149950 ATATCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
149990 ATATC
1 ATATC
149995 TAAATCCGAA
Statistics
Matches: 152, Mismatches: 9, Indels: 7
0.90 0.05 0.04
Matches are distributed among these distances:
39 16 0.11
40 132 0.87
41 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:151009 original size:47 final size:47
Alignment explanation
Indices: 150953--151045 Score: 186
Period size: 47 Copynumber: 2.0 Consensus size: 47
150943 AGAAGTCAGA
150953 AAAATATGGAATTAAAGCTTATTGAGTCTAGTTTCTCATAGAATAAC
1 AAAATATGGAATTAAAGCTTATTGAGTCTAGTTTCTCATAGAATAAC
151000 AAAATATGGAATTAAAGCTTATTGAGTCTAGTTTCTCATAGAATAA
1 AAAATATGGAATTAAAGCTTATTGAGTCTAGTTTCTCATAGAATAA
151046 ACGGTATAAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (47 bp):
AAAATATGGAATTAAAGCTTATTGAGTCTAGTTTCTCATAGAATAAC
Found at i:153473 original size:15 final size:14
Alignment explanation
Indices: 153440--153479 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
153430 CAAGAAAGCA
153440 AAGAA-GAAGATAAG
1 AAGAAGGAAGA-AAG
153454 AAGAAGGAAGAAAG
1 AAGAAGGAAGAAAG
153468 AGAGAAGGAAGA
1 A-AGAAGGAAGA
153480 CTTGAGTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.38
15 15 0.62
ACGTcount: A:0.62, C:0.00, G:0.35, T:0.03
Consensus pattern (14 bp):
AAGAAGGAAGAAAG
Found at i:153704 original size:31 final size:31
Alignment explanation
Indices: 153631--153706 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 31
153621 GCCTGAATTT
*
153631 TTATATATAATTA-TTTTAATTTTAATTAAA
1 TTATATATTATTATTTTTAATTTTAATTAAA
* **
153661 TT-TTTATATATTATTTTTAATCTTT-ATTTTA
1 TTATATAT-TATTATTTTTAAT-TTTAATTAAA
153692 TTATATATTATTATT
1 TTATATATTATTATT
153707 GTCAATTTGT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
29 4 0.11
30 6 0.16
31 20 0.54
32 7 0.19
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (31 bp):
TTATATATTATTATTTTTAATTTTAATTAAA
Found at i:154954 original size:29 final size:29
Alignment explanation
Indices: 154921--154987 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
154911 AGACTATATC
*
154921 TTTATAATTTTTAAAGGAT-TAAAT-TAATT
1 TTTATAATTTTT-AAGGATAAAAATGTAA-T
* *
154950 TTTATTATTTTTAGGGATAAAAATGTAAT
1 TTTATAATTTTTAAGGATAAAAATGTAAT
154979 TTTATAATT
1 TTTATAATT
154988 ACTAATTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 5 0.16
29 24 0.75
30 3 0.09
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (29 bp):
TTTATAATTTTTAAGGATAAAAATGTAAT
Done.