Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1049
Parameters: 2 7 7 80 10 50 1000
Length:  22440

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2167--2198
12
2.8
12
95
4
57
6
15
0
78
0.95
2201--2231
12
2.6
12
100
0
62
25
16
12
45
1.83
2279--2339
5
12.2
5
74
19
56
3
19
1
75
1.03
2302--2345
12
3.8
11
79
8
52
0
22
2
75
0.92
2277--2345
17
4.1
17
72
23
56
2
21
1
73
1.04
2279--2346
23
3.0
23
83
8
86
2
20
1
75
1.02
3202--3251
11
4.3
12
82
7
59
20
4
2
74
1.08
3198--3244
23
2.0
23
95
0
85
14
4
4
76
1.09
3198--3245
22
2.1
23
92
3
80
14
6
4
75
1.16
5008--5095
30
2.9
30
71
6
97
28
17
27
27
1.97
8029--8086
12
4.5
13
75
14
50
74
3
1
20
1.06
8131--8196
29
2.2
29
89
7
98
72
3
13
10
1.22
8130--8199
28
2.4
30
86
6
101
71
2
15
10
1.25
9052--9087
6
6.0
6
93
0
54
33
0
27
38
1.57
8997--9063
27
2.5
28
82
4
84
61
0
23
14
1.34
12346--12388
12
3.5
12
75
6
50
72
4
2
20
1.14
12346--12393
25
2.0
24
91
4
78
64
4
6
25
1.35
12433--12503
31
2.3
30
92
2
115
74
2
12
9
1.17
13358--13393
6
6.0
6
93
0
54
33
0
27
38
1.57
13303--13369
27
2.5
28
82
4
84
61
0
23
14
1.34
16904--16948
10
4.5
10
80
0
54
13
24
22
40
1.90
16900--16949
20
2.5
20
90
0
82
14
22
22
42
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18147--18172
12
2.2
12
100
0
52
23
0
7
69
1.14
20459--20513
15
3.8
14
81
13
67
76
1
20
1
0.97
20452--20515
9
7.2
9
77
13
53
75
3
20
1
1.03
20463--20541
39
2.0
42
82
12
103
68
3
24
3
1.23
20454--20514
20
3.1
20
80
13
65
77
3
18
1
0.99

Tables:   1

The End!