genome.fa.s235.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold647
Parameters: 2 7 7 80 10 50 1000
Length:  155333

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15050--15149	51	2.0	51	88	4	148	23	15	28	34	1.94
26404--26585	49	3.7	49	86	2	265	26	19	26	28	1.99
26406--26592	100	1.9	100	95	0	338	26	19	25	28	1.99
29562--29626	15	4.4	15	74	16	64	9	13	12	64	1.49
29558--29626	30	2.3	31	80	14	83	8	13	15	62	1.54
32070--32250	49	3.7	49	84	4	247	25	19	26	28	1.99
32072--32257	99	1.9	100	93	1	320	25	19	25	28	1.99
38836--38902	35	1.9	35	96	0	125	28	8	32	29	1.88
42708--42810	42	2.4	43	80	4	120	27	19	25	28	1.99
49392--49573	40	4.6	40	88	2	251	24	22	25	27	2.00
57072--57148	24	3.2	24	94	0	127	31	2	42	23	1.68
58556--58662	27	4.0	26	90	6	160	14	24	23	38	1.91
61061--61110	22	2.3	21	80	6	55	22	14	4	60	1.51
73407--73611	44	4.6	45	74	6	159	28	20	25	25	1.99
73404--73655	133	1.9	133	88	1	380	28	19	25	26	1.98
75571--75612	16	2.6	16	88	0	57	23	2	4	69	1.20
75864--75909	24	2.0	23	86	4	65	21	13	2	63	1.40
76681--76715	16	2.3	15	95	5	61	31	14	20	34	1.92
93893--93982	42	2.1	42	83	4	110	30	14	23	32	1.94
99907--100086	6	29.3	6	69	17	104	48	14	18	18	1.81
99916--100036	37	3.3	37	79	9	124	50	14	18	17	1.78
100019--100086	25	2.7	25	90	0	109	45	14	20	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99983--100064	37	2.2	36	86	2	110	46	15	19	18	1.84
99916--100086	31	5.5	31	71	16	131	48	14	19	18	1.81
100205--100311	27	4.0	26	79	8	90	37	17	23	21	1.94
100909--101322	27	15.3	27	82	4	390	25	19	17	37	1.93
100911--101320	81	5.1	81	84	2	475	26	19	17	37	1.93
101305--101473	27	6.3	27	77	4	144	31	8	21	37	1.85
101126--101349	54	4.2	53	76	5	128	28	18	16	36	1.92
101389--101465	26	2.9	27	90	3	120	33	12	14	38	1.84
101352--101481	27	4.9	27	83	3	156	30	8	23	38	1.84
101352--101481	53	2.4	53	84	3	163	30	8	23	38	1.84
107128--107221	40	2.3	41	80	10	97	24	27	19	28	1.98
111501--111656	43	3.7	43	76	3	147	28	14	24	32	1.95
112469--112496	13	2.2	13	100	0	56	42	0	32	25	1.55
118342--118494	43	3.6	42	82	6	177	25	15	24	35	1.94
123172--123265	27	3.5	26	87	8	134	39	21	23	15	1.92
123172--123282	27	4.1	27	80	7	118	37	21	23	17	1.93
123172--123282	54	2.1	54	86	3	152	37	21	23	17	1.93
123370--123442	26	2.7	28	76	16	66	30	13	23	32	1.93
129093--129178	27	3.2	27	80	6	120	33	24	23	18	1.97
130411--130442	16	1.9	17	93	6	57	78	0	15	6	0.95
133582--134322	48	15.0	48	82	10	734	37	6	25	30	1.82
133774--133917	71	2.0	71	95	0	261	36	7	25	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133729--133965	119	2.0	120	97	1	449	36	7	25	30	1.83
133847--134322	236	2.0	237	92	1	803	37	6	25	30	1.80
134763--134800	20	1.9	20	88	0	58	50	2	13	34	1.55
137787--137900	29	4.0	29	84	6	144	28	28	14	27	1.96
137778--137893	57	2.0	57	85	3	153	27	31	14	26	1.95
139223--139254	16	2.0	16	100	0	64	6	6	37	50	1.53
145191--145313	28	4.4	28	90	2	176	33	28	12	26	1.92
151402--151492	40	2.3	40	84	3	121	23	19	26	30	1.98

Tables:   1

The End!