genome.fa.s236.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3724
Parameters: 2 7 7 80 10 50 1000
Length:  125580

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3191--3825	47	13.5	47	95	2	1141	32	8	29	30	1.86
3191--3825	283	2.2	284	96	1	1195	32	8	29	30	1.86
6139--6348	39	5.3	40	86	4	302	25	21	26	25	2.00
6139--6348	79	2.7	78	91	2	332	25	21	26	25	2.00
6271--6441	93	1.8	92	91	3	281	25	22	25	26	2.00
6221--6477	133	1.9	132	85	5	349	26	21	24	27	2.00
6353--6527	40	4.4	40	85	1	228	24	20	28	27	1.99
6797--6822	11	2.4	11	100	0	52	26	15	38	19	1.91
10114--10856	47	15.6	47	92	3	1157	33	8	28	29	1.87
10114--10856	96	7.8	94	93	3	1157	33	8	28	29	1.87
10114--10856	335	2.2	334	95	0	1315	33	8	28	29	1.87
16169--16203	18	1.9	18	88	0	52	20	34	2	42	1.66
16958--16983	13	2.0	13	100	0	52	15	30	38	15	1.88
25051--25080	3	10.3	3	92	7	53	70	0	0	30	0.88
25049--25078	14	2.1	14	100	0	60	73	0	0	26	0.84
25046--25080	17	2.1	16	94	5	61	71	0	0	28	0.86
25082--25112	16	1.9	16	93	0	53	45	19	3	32	1.66
34204--34327	63	2.0	63	90	3	196	37	21	12	27	1.90
38635--38682	16	2.9	16	77	22	55	43	6	0	50	1.27
39330--39369	3	13.3	3	100	0	80	67	0	0	32	0.91
44061--44123	25	2.4	27	79	12	69	57	6	4	31	1.45
44804--44893	25	3.7	24	92	4	144	5	2	20	72	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44791--44893	49	2.1	49	83	3	127	4	1	22	70	1.16
45762--46412	72	8.7	74	84	7	718	32	20	16	31	1.94
45757--46722	151	6.3	152	83	7	893	31	20	17	30	1.96
46295--46722	165	2.6	165	91	3	700	30	20	19	30	1.97
46416--46577	74	2.1	75	83	5	202	31	20	19	27	1.97
46492--46667	90	2.0	90	87	4	257	32	18	21	27	1.97
46571--46722	76	2.0	76	89	3	234	28	21	21	29	1.98
46659--46975	126	2.5	126	89	2	489	35	21	15	27	1.94
46866--47041	71	2.5	70	87	3	230	34	22	14	29	1.93
57767--57818	19	2.8	18	82	5	77	3	0	36	59	1.16
61494--61532	20	2.0	20	84	0	51	64	0	7	28	1.21
61830--61886	20	2.8	20	76	10	53	64	3	3	28	1.26
68399--68432	18	1.9	17	88	5	50	64	5	2	26	1.30
72482--72601	60	2.0	60	95	0	213	35	32	6	25	1.82
75342--75588	132	1.9	130	84	3	334	37	21	12	28	1.90
80144--80182	13	3.3	13	73	26	50	30	5	0	64	1.15
80139--80182	22	2.0	22	100	0	88	31	4	0	63	1.14
80187--80215	2	14.5	2	100	0	58	48	0	0	51	1.00
85398--85442	21	2.2	20	84	4	54	26	13	20	40	1.89
88054--88222	52	3.3	51	89	4	243	37	15	21	24	1.93
88054--88222	50	3.3	51	89	8	238	37	15	21	24	1.93
88218--88397	31	5.8	31	94	0	306	28	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89955--90029	26	3.0	26	83	14	95	30	14	14	40	1.86
93817--93854	19	2.1	18	90	5	58	50	0	21	28	1.49
100006--100051	17	2.9	16	81	9	58	0	19	0	80	0.71
100091--100130	13	3.1	13	85	0	53	77	2	0	20	0.88
100803--100850	12	3.8	12	76	10	51	27	6	4	62	1.38
101004--101045	22	1.9	22	90	0	66	23	7	2	66	1.28
101084--101163	38	2.2	36	72	4	70	28	15	2	53	1.54
111626--111662	19	1.9	19	94	0	65	35	0	18	45	1.50
111874--112213	41	8.3	41	90	0	527	29	20	28	22	1.98
111874--112207	82	4.1	82	100	0	668	29	20	28	22	1.98
112459--112669	103	2.1	103	99	0	415	42	9	16	31	1.80
118620--118656	19	1.9	19	94	0	65	35	0	18	45	1.50

Tables:   1

The End!