Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2196
Parameters: 2 7 7 80 10 50 1000
Length:  36382

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2759--3065
46
6.7
46
90
5
462
33
12
27
26
1.92
2759--3065
94
3.3
92
91
4
505
33
12
27
26
1.92
2759--3065
141
2.2
138
87
6
367
33
12
27
26
1.92
3296--3418
34
3.6
34
88
8
171
26
18
31
23
1.97
4692--5150
39
11.9
40
92
4
732
25
21
27
25
1.99
4692--5150
77
5.9
77
92
5
748
25
21
27
25
1.99
4692--5150
116
3.9
117
92
4
745
25
21
27
25
1.99
9307--9497
47
4.1
47
88
0
265
32
10
28
27
1.90
9381--9456
23
3.2
25
62
24
63
28
13
34
23
1.92
9470--9702
48
4.8
48
91
4
378
35
7
26
30
1.85
9849--9957
37
2.9
37
91
0
173
23
18
30
27
1.98
21538--21660
55
2.2
56
88
2
176
26
12
28
33
1.92
21538--21660
28
4.4
28
90
2
176
26
12
28
33
1.92
21563--21673
28
4.0
27
90
3
116
28
11
26
33
1.91
29723--29845
55
2.2
56
88
2
176
26
12
28
33
1.92
29723--29845
28
4.4
28
90
2
176
26
12
28
33
1.92
29748--29858
28
4.0
27
90
3
116
28
11
26
33
1.91
33374--33504
27
4.9
27
88
0
172
28
22
9
39
1.86
33482--33783
27
11.2
27
73
11
172
39
20
9
31
1.84
33496--33674
27
6.7
26
81
8
198
41
19
8
30
1.82
33482--33676
81
2.4
81
88
4
279
39
21
8
30
1.83
33482--33727
81
3.0
81
83
9
274
40
20
8
30
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33803--33880
27
2.9
27
78
3
86
37
21
17
23
1.94
35175--35318
24
6.0
24
82
12
163
27
21
23
27
1.99
35509--35572
31
2.1
31
90
0
101
37
14
23
25
1.92

Tables:   1

The End!