genome.fa.s2369.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2055
Parameters: 2 7 7 80 10 50 1000
Length:  47920

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1540--1717	55	3.3	54	81	6	207	28	28	15	26	1.96
1540--1716	27	6.5	27	81	3	167	28	28	15	26	1.96
9462--9638	27	6.6	27	80	4	160	28	28	16	25	1.97
9483--9637	82	1.9	80	84	5	204	28	29	16	25	1.97
11526--11636	46	2.4	46	89	0	177	18	25	30	25	1.98
13495--14183	138	5.1	138	87	2	941	41	7	5	44	1.57
13495--14183	274	2.5	272	86	3	969	41	7	5	44	1.57
17985--18117	40	3.2	40	66	24	110	44	26	4	24	1.73
17945--18118	87	2.0	87	98	0	339	43	25	4	25	1.74
19106--19237	43	3.0	44	74	14	148	34	26	15	24	1.95
19537--19572	15	2.4	15	95	0	63	47	22	0	30	1.52
23503--23640	51	2.7	51	83	6	165	28	29	16	25	1.97
23503--23721	51	4.3	52	81	7	164	28	28	17	25	1.97
23546--23783	51	4.7	51	81	2	192	30	26	16	26	1.97
27060--27193	48	2.8	48	82	0	169	29	20	23	26	1.99
30134--30209	27	2.8	27	79	0	98	22	23	15	38	1.93
33711--33895	79	2.3	81	83	7	227	24	22	27	24	2.00
33712--33895	40	4.6	40	82	9	207	25	22	27	24	2.00
33764--33928	79	2.1	79	83	6	201	26	21	27	24	1.99
40429--40494	20	3.2	20	64	19	55	21	21	27	30	1.98
40426--40598	46	3.9	43	80	13	183	21	21	28	28	1.98
40426--40590	87	1.8	91	89	6	266	21	21	28	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44378--44420	22	2.0	23	90	9	72	0	4	11	83	0.78
44382--44448	26	2.7	25	84	9	75	2	8	5	82	0.94

Tables:   1

The End!