Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1290
Parameters: 2 7 7 80 10 50 1000
Length:  113045

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14677--14716
21
2.0
21
95
5
73
20
30
40
10
1.85
15639--15858
46
4.7
46
78
12
204
23
32
17
25
1.97
15639--15853
50
4.6
47
80
10
214
23
32
17
26
1.97
18888--18926
16
2.3
16
86
8
51
53
2
0
43
1.14
20569--20629
29
2.1
29
96
0
113
34
9
4
50
1.57
21040--21081
10
4.4
10
79
8
52
71
0
0
28
0.86
21041--21093
18
2.8
18
83
16
72
67
0
1
30
1.01
21041--21110
19
3.7
18
84
9
79
68
0
4
27
1.08
21049--21110
18
3.3
18
86
11
72
67
0
4
27
1.10
21832--21870
20
2.0
20
89
0
60
43
5
0
51
1.24
23221--23253
13
2.5
13
95
0
57
60
0
0
39
0.97
26786--26820
6
5.8
6
100
0
70
17
0
0
82
0.66
27301--27341
18
2.3
18
86
0
64
53
7
24
14
1.66
29925--30078
44
3.5
44
76
6
136
29
17
25
27
1.97
34652--34696
17
2.6
18
85
3
56
53
2
0
44
1.13
37201--37249
24
2.0
24
84
0
62
24
0
20
55
1.44
39207--39278
36
2.0
36
100
0
144
38
19
13
27
1.90
47250--47296
17
2.8
17
80
6
51
2
6
10
80
0.96
58532--58568
18
2.1
18
94
0
65
21
18
10
48
1.78
58943--59121
59
3.1
59
91
2
281
32
4
8
53
1.52
62189--62641
156
3.0
154
85
4
598
30
20
14
35
1.92
62601--62649
25
2.0
25
83
0
62
38
12
8
40
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62936--63032
40
2.4
40
77
11
108
22
29
21
25
1.99
65430--65479
21
2.4
21
86
6
66
40
4
22
34
1.72
65638--65718
11
7.0
12
76
16
57
54
1
2
41
1.21
65639--65696
21
2.6
22
79
17
66
56
0
1
41
1.09
65652--65704
11
4.9
11
82
13
65
54
0
3
41
1.18
68025--68099
18
4.2
18
76
8
64
42
16
12
29
1.83
68201--68243
18
2.4
19
80
11
54
37
20
25
16
1.93
68914--68947
17
2.1
15
89
10
50
0
35
0
64
0.94
69810--69852
3
14.7
3
95
4
79
65
0
0
34
0.93
72312--72351
12
3.4
11
83
16
53
67
5
2
25
1.23
73970--74480
44
11.6
43
71
12
227
29
19
17
33
1.95
74092--74478
133
2.8
134
76
5
366
29
18
17
34
1.94
74274--74511
44
5.5
41
74
12
140
28
20
18
32
1.96
78785--78838
12
4.6
11
78
17
56
68
3
3
24
1.22
81121--81170
25
2.0
26
84
11
68
46
2
12
40
1.52
81361--81400
13
2.8
15
88
11
66
60
0
12
27
1.33
83790--84020
40
5.8
41
84
3
294
25
21
28
25
1.99
83800--84020
80
2.8
80
89
2
329
24
20
28
25
1.99
83790--84040
120
2.1
118
85
2
333
24
20
27
26
1.99
86574--86625
23
2.4
21
83
6
59
32
7
1
57
1.38
90282--90550
86
3.1
86
88
3
371
43
13
7
36
1.71
90295--90592
86
3.5
85
85
3
303
41
13
9
35
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90552--90827
79
3.5
79
88
0
399
38
12
16
32
1.86
90538--90943
158
2.5
165
81
6
434
39
13
15
32
1.86
92147--92185
21
1.9
20
94
5
69
23
5
5
66
1.32
92607--92661
20
2.8
20
75
8
58
54
0
0
45
0.99
94003--94034
16
2.0
16
100
0
64
31
18
6
43
1.75
95891--95929
19
2.1
19
90
4
62
56
0
15
28
1.40
96745--96780
18
2.0
18
100
0
72
33
27
11
27
1.91
99883--99954
36
2.0
36
94
0
126
29
19
25
26
1.99
106038--106095
27
2.1
27
90
0
89
24
25
39
10
1.87
107792--107963
93
1.8
93
94
0
308
27
30
21
20
1.98
107784--107959
46
3.8
46
81
10
214
28
29
21
21
1.98

Tables:   1

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