Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3347
Parameters: 2 7 7 80 10 50 1000
Length:  42295

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
832--1008
40
4.5
40
82
6
191
26
19
27
26
1.99
829--1040
78
2.7
79
79
6
191
26
20
27
25
1.99
7952--8028
27
2.7
28
78
17
88
28
31
14
25
1.95
7670--7974
143
2.1
146
98
1
589
30
24
15
29
1.96
7929--8026
27
3.5
27
74
19
85
29
29
14
26
1.95
15933--16000
29
2.3
29
85
5
93
27
30
13
27
1.94
16247--16325
29
2.7
29
84
2
104
30
30
13
25
1.94
15964--16269
145
2.1
145
99
0
603
30
24
15
29
1.95
19083--19136
24
2.3
24
81
12
67
55
5
3
35
1.41
19211--19261
21
2.4
21
100
0
102
54
3
0
41
1.19
21053--21098
17
2.9
16
78
12
58
47
2
0
50
1.13
23213--23243
14
2.1
15
94
5
55
45
0
0
54
0.99
24077--24148
37
1.9
37
97
0
135
48
18
0
33
1.48
24114--24161
25
1.9
25
86
0
69
45
20
0
33
1.52
24220--24305
25
3.4
25
87
3
93
46
22
2
29
1.64
24224--24536
41
7.4
41
72
11
193
47
18
3
29
1.66
24192--24562
16
23.1
16
66
22
131
47
18
3
30
1.65
24247--24334
25
3.5
25
84
9
108
50
19
2
28
1.60
24265--24494
25
9.2
25
74
13
122
47
17
4
30
1.67
24221--24427
66
3.1
66
86
3
274
46
19
3
29
1.66
24322--24511
83
2.3
82
90
4
294
48
17
4
30
1.66
24448--24566
25
4.8
25
76
14
86
47
17
1
32
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24388--24562
41
4.2
40
74
9
140
49
17
2
30
1.61
24483--24574
25
3.7
25
84
5
105
47
17
1
33
1.55
30070--30109
21
1.9
21
84
0
53
32
15
50
2
1.57
30476--30678
43
4.7
43
74
9
180
31
20
26
21
1.98
30478--30678
86
2.3
86
82
3
235
30
20
26
21
1.98
31555--31582
6
4.7
6
100
0
56
17
0
14
67
1.22
35614--35892
125
2.2
124
92
2
470
30
23
17
29
1.97
37732--37954
40
5.6
39
80
7
216
25
21
27
25
1.99
37812--37989
79
2.2
80
82
3
200
25
21
28
24
1.99

Tables:   1

The End!