Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1231
Parameters: 2 7 7 80 10 50 1000
Length:  49001

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
389--435
9
4.9
9
85
14
67
12
4
0
82
0.80
389--435
20
2.4
20
92
3
78
12
4
0
82
0.80
1547--1572
13
2.0
13
100
0
52
46
7
0
46
1.31
1962--2000
20
1.9
21
89
5
62
35
12
28
23
1.91
3290--3338
22
2.2
23
82
10
66
30
8
18
42
1.79
6731--6778
21
2.4
21
86
10
66
72
2
18
6
1.15
8304--8336
17
1.9
17
88
11
50
45
27
12
15
1.81
17819--17870
23
2.3
22
75
21
54
9
23
1
65
1.32
17828--17882
12
4.6
12
73
15
51
12
23
0
63
1.29
17864--17901
17
2.2
18
85
4
51
10
23
2
63
1.39
28443--28477
9
3.8
9
88
3
52
5
8
0
85
0.73
30008--30054
20
2.3
20
85
0
67
21
12
36
29
1.91
32401--32452
23
2.3
22
75
21
54
9
23
1
65
1.32
33774--33807
9
3.7
9
92
4
50
8
5
11
73
1.24
34701--34745
21
2.1
22
84
12
58
13
8
8
68
1.38
36857--36895
10
3.8
10
82
3
51
79
2
5
12
1.00
36877--36910
14
2.4
14
95
0
59
76
8
5
8
1.15
37904--37949
20
2.2
20
84
3
56
65
0
26
8
1.21
37956--37991
12
3.0
12
87
0
54
33
0
25
41
1.55
45505--45677
32
5.2
33
86
6
224
17
22
17
42
1.89
45505--45674
67
2.6
67
92
0
270
18
22
17
41
1.90
48471--48514
20
2.1
22
84
16
58
13
9
9
68
1.40

Tables:   1

The End!