Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1709

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6946
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35


Found at i:1493 original size:14 final size:14

Alignment explanation


    Indices: 1474--1511  Score: 67
    Period size: 14  Copynumber: 2.7  Consensus size: 14

       1464 TCAAGTTGTG

                     *    
       1474 AAAAAAATTTTGAA
          1 AAAAAAATTGTGAA

                          
       1488 AAAAAAATTGTGAA
          1 AAAAAAATTGTGAA

                      
       1502 AAAAAAATTG
          1 AAAAAAATTG

       1512 AAAAAGAGAG


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  14   23  1.00

ACGTcount: A:0.66, C:0.00, G:0.11, T:0.24


Consensus pattern (14 bp):   
AAAAAAATTGTGAA
Done.