Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2804
Parameters: 2 7 7 80 10 50 1000
Length:  34793

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4871--4915
22
2.0
22
100
0
90
15
13
35
35
1.87
5068--5115
13
3.6
13
91
5
78
18
10
0
70
1.15
5068--5120
26
2.0
27
92
3
90
22
13
0
64
1.28
5077--5132
26
2.1
27
83
3
69
28
17
1
51
1.56
7443--7494
23
2.3
22
75
21
54
9
23
1
65
1.32
11635--11682
25
2.0
25
88
12
73
18
18
12
50
1.78
16763--16826
22
3.0
21
88
6
92
29
4
34
31
1.78
19107--19155
12
4.2
12
89
5
73
65
14
6
14
1.45
19198--19244
13
3.5
13
91
5
76
68
0
10
21
1.20
19191--19244
14
3.9
14
87
7
83
62
0
12
24
1.30
23028--23072
11
4.0
11
94
5
81
73
8
0
17
1.08
23031--23075
12
3.8
12
94
5
83
75
6
0
17
1.01
23028--23075
23
2.1
23
100
0
96
70
8
0
20
1.12
23113--23154
16
2.7
16
96
3
77
64
4
11
19
1.44
31332--31385
20
2.7
20
82
0
63
24
20
18
37
1.94
31332--31405
30
2.5
30
86
8
98
21
20
18
39
1.93
31332--31396
20
3.2
20
71
16
53
23
21
16
38
1.93
32975--33004
12
2.5
12
100
0
60
86
6
0
6
0.70
32975--33043
12
5.5
12
77
14
59
75
4
5
14
1.15
34103--34158
5
10.4
5
78
14
58
75
5
16
3
1.13
34103--34141
11
3.6
11
93
3
62
79
5
15
0
0.90
34112--34211
6
16.8
6
67
13
55
71
3
19
7
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34103--34158
22
2.5
22
83
8
69
75
5
16
3
1.13
34081--34153
11
6.6
11
78
9
51
69
4
17
8
1.29
34103--34159
17
3.5
17
83
9
66
73
5
15
5
1.19
34112--34209
17
5.5
17
75
10
81
71
3
18
7
1.22
34089--34209
12
10.0
12
69
17
56
70
3
18
8
1.26
34173--34229
26
2.1
27
84
9
73
71
1
17
8
1.19
34226--34288
33
1.9
33
84
12
85
55
6
25
12
1.60

Tables:   1

The End!