Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3424
Parameters: 2 7 7 80 10 50 1000
Length:  108919

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12266--12486
80
2.8
80
80
7
202
27
27
20
24
1.99
12306--12486
80
2.3
80
83
9
219
27
27
20
23
1.99
12303--12486
40
4.6
40
81
7
196
28
27
20
23
1.99
20162--20382
80
2.8
80
80
7
202
27
27
20
24
1.99
20202--20382
80
2.3
80
83
9
219
27
27
20
23
1.99
20199--20382
40
4.6
40
81
7
196
28
27
20
23
1.99
23479--23512
10
3.3
10
88
8
50
58
17
20
2
1.51
32477--32549
36
2.0
36
94
0
128
27
15
8
49
1.72
35549--35599
23
2.2
24
79
10
61
52
0
5
41
1.25
36689--36734
18
2.4
18
82
7
56
39
2
6
52
1.40
36809--36881
38
2.0
37
86
7
105
49
6
16
27
1.71
37367--37472
53
2.0
53
100
0
212
30
9
28
32
1.88
62338--62413
35
2.2
35
82
0
89
22
22
25
30
1.99
65564--65627
25
2.7
22
75
13
56
45
1
7
45
1.42
68040--68079
20
2.0
20
100
0
80
10
0
30
60
1.30
71732--71828
27
3.5
28
88
5
126
25
13
28
31
1.94
71760--71841
27
3.0
27
82
7
87
29
12
25
32
1.92
80024--80120
28
3.5
28
90
1
133
26
13
28
30
1.94
88291--88388
27
3.5
28
90
2
135
26
13
28
31
1.94
88319--88401
27
3.0
27
87
5
96
30
12
25
32
1.92
88291--88402
28
4.0
27
83
6
98
28
12
25
33
1.92
91302--91340
15
2.6
15
84
8
53
87
7
0
5
0.68

Tables:   1

The End!