genome.fa.s2385.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1371
Parameters: 2 7 7 80 10 50 1000
Length:  47206

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3033--3512	47	10.1	47	90	4	737	30	12	30	26	1.92
3033--3512	98	5.0	94	92	3	746	30	12	30	26	1.92
3200--3275	24	3.2	24	62	23	61	28	13	32	25	1.93
3486--3576	46	2.0	46	86	0	128	32	8	31	26	1.87
3033--3561	145	3.7	140	86	6	600	31	12	30	26	1.92
3720--3864	37	4.0	36	93	3	245	23	19	31	26	1.98
5115--5386	40	6.8	40	94	0	454	23	22	29	24	1.99
5562--5613	25	2.1	25	85	7	70	28	7	32	30	1.85
9177--9706	47	11.1	47	89	4	772	31	12	29	26	1.93
9203--9277	22	3.3	22	64	29	57	30	13	30	25	1.94
9345--9420	24	3.2	24	62	23	61	28	13	32	25	1.93
9495--9569	22	3.3	22	66	23	64	30	13	30	25	1.94
9680--9770	46	2.0	46	86	0	128	32	8	31	26	1.87
9913--10095	37	4.9	37	91	0	276	24	18	29	27	1.98
12613--12654	8	5.2	8	80	11	50	14	9	0	76	1.02
12604--12677	32	2.4	31	80	17	82	17	6	1	74	1.11
14045--14096	24	2.3	23	86	6	70	50	1	9	38	1.46
15567--15606	22	1.9	20	85	10	53	52	0	7	40	1.30
17902--17926	12	2.1	12	100	0	50	60	0	8	32	1.26
18051--18077	5	5.4	5	100	0	54	62	0	0	37	0.95
27320--27359	21	2.0	21	95	5	73	10	35	27	27	1.89
29631--29839	46	4.5	44	79	12	199	26	28	16	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38481--38701	40	5.6	40	84	4	279	26	26	22	24	2.00
46700--46920	40	5.6	40	86	4	297	26	26	22	24	2.00

Tables:   1

The End!