Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2112
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102076
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:5356 original size:26 final size:26
Alignment explanation
Indices: 5327--5434 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
5317 TGGTACAAAT
5327 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
5353 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
5379 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
5405 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
5431 TGAT
1 TGAT
5435 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:6778 original size:16 final size:17
Alignment explanation
Indices: 6746--6778 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
6736 TTTTTGGGCT
6746 TAATGGGCCAAAACGGGA
1 TAATGGGCC-AAACGGGA
6764 TAATGGGCC-AACGGG
1 TAATGGGCCAAACGGG
6779 CCCAAATTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.33, C:0.18, G:0.36, T:0.12
Consensus pattern (17 bp):
TAATGGGCCAAACGGGA
Found at i:7078 original size:26 final size:26
Alignment explanation
Indices: 7012--7166 Score: 192
Period size: 27 Copynumber: 5.9 Consensus size: 26
7002 AGGAAGCGTC
*
7012 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGAT
7039 CTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTCTGCCACA-ATATCTGAT
*
7065 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGAT
*
7092 CTGGTGGCTCTG-C-CAATATCTGTT
1 CTGGTGGCTCTGCCACAATATCTGAT
7116 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG-AT
* *
7143 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
7167 GCAGCCTCGC
Statistics
Matches: 114, Mismatches: 7, Indels: 14
0.84 0.05 0.10
Matches are distributed among these distances:
24 19 0.17
25 5 0.04
26 34 0.30
27 55 0.48
28 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:7092 original size:53 final size:51
Alignment explanation
Indices: 7012--7148 Score: 215
Period size: 53 Copynumber: 2.6 Consensus size: 51
7002 AGGAAGCGTC
7012 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTG-C-CA-ATATCTGTT
7065 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCAATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCAATATCTGTT
*
7116 CTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
7149 ACTTCGTCAC
Statistics
Matches: 81, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
50 13 0.16
51 28 0.35
52 1 0.01
53 39 0.48
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (51 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCAATATCTGTT
Found at i:12431 original size:26 final size:26
Alignment explanation
Indices: 12350--12454 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
12340 TGGTACAAAT
12350 TGATAATGGGTTA-GTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
12374 TGATAATGGATTAGGTAAAT-ATCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
12399 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
12425 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
12451 TGAT
1 TGAT
12455 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
24 13 0.18
25 27 0.37
26 33 0.45
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:12439 original size:51 final size:50
Alignment explanation
Indices: 12350--12454 Score: 167
Period size: 51 Copynumber: 2.1 Consensus size: 50
12340 TGGTACAAAT
12350 TGATAATGGGTTAGTAAATGTTCATGATAATGGATTAGGTAAAT-ATCCA
1 TGATAATGGGTTAGTAAATGTTCATGATAATGGATTAGGTAAATGATCCA
* *
12399 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTA-GTAAATGTT-CATGATAATGGATTAGGTAAATGATCCA
12451 TGAT
1 TGAT
12455 GGGCATTTCA
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
49 13 0.25
50 9 0.18
51 21 0.41
52 8 0.16
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (50 bp):
TGATAATGGGTTAGTAAATGTTCATGATAATGGATTAGGTAAATGATCCA
Found at i:14094 original size:27 final size:27
Alignment explanation
Indices: 14054--14194 Score: 128
Period size: 27 Copynumber: 5.2 Consensus size: 27
14044 AGGAAGCGTC
*
14054 CTGGTGGCTATGCCAAAATTATCTGAT
1 CTGGTGGCTCTGCCAAAATTATCTGAT
* *
14081 CTGGTGGCTCTGCC-ACATATATTTG-T
1 CTGGTGGCTCTGCCAAAAT-TATCTGAT
* * *
14107 CTTGATGGCTATGCCACAATTATCTGAT
1 C-TGGTGGCTCTGCCAAAATTATCTGAT
* * *
14135 CTGGTGGCACTGCC-ACATATATCTGTT
1 CTGGTGGCTCTGCCAAAAT-TATCTGAT
*
14162 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCAAAATTATCTG-AT
14189 CTGGTG
1 CTGGTG
14195 ACTTCGTCAC
Statistics
Matches: 89, Mismatches: 18, Indels: 14
0.74 0.15 0.12
Matches are distributed among these distances:
26 13 0.15
27 71 0.80
28 5 0.06
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCAAAATTATCTGAT
Found at i:14140 original size:54 final size:54
Alignment explanation
Indices: 14058--14194 Score: 197
Period size: 54 Copynumber: 2.5 Consensus size: 54
14048 AGCGTCCTGG
* * *
14058 TGGCTATGCCAAAATTATCTGATCTGGTGGCTCTGCCACATATATTTG-TCTTGA
1 TGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTGTTC-TGA
*
14112 TGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTGTTCTGG
1 TGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTGTTCTGA
*
14166 TGGCTCTGCCACAA-TATCTGTATCTGGTG
1 TGGCTATGCCACAATTATCTG-ATCTGGTG
14195 ACTTCGTCAC
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
53 6 0.08
54 68 0.89
55 2 0.03
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (54 bp):
TGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTGTTCTGA
Found at i:14190 original size:32 final size:27
Alignment explanation
Indices: 14073--14194 Score: 135
Period size: 27 Copynumber: 4.5 Consensus size: 27
14063 ATGCCAAAAT
*
14073 TATCTGATCTGGTGGCTCTGCCACATA
1 TATCTGATCTGGTGGCACTGCCACATA
* *
14100 TATTTG-TCTTGATGGCTA-TGCCACA-A
1 TATCTGATC-TGGTGGC-ACTGCCACATA
14126 TTATCTGATCTGGTGGCACTGCCACATA
1 -TATCTGATCTGGTGGCACTGCCACATA
* *
14154 TATCTGTTCTGGTGGCTCTGCCACA-A
1 TATCTGATCTGGTGGCACTGCCACATA
14180 TATCTGTATCTGGTG
1 TATCTG-ATCTGGTG
14195 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
26 11 0.14
27 66 0.82
28 3 0.04
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (27 bp):
TATCTGATCTGGTGGCACTGCCACATA
Found at i:14205 original size:27 final size:26
Alignment explanation
Indices: 14054--14212 Score: 115
Period size: 27 Copynumber: 5.9 Consensus size: 26
14044 AGGAAGCGTC
* * * *
14054 CTGGTGGCTATGCCAAAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* *
14081 CTGGTGGCTCTGCCACATATATTTG-T
1 CTGGTGACTCTGCCACA-ATATCTGTT
* * * *
14107 CTTGATGGCTATGCCACAATTATCTGAT
1 C-TGGTGACTCTGCCACAA-TATCTGTT
* *
14135 CTGGTGGCACTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
14162 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
*
14189 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
14213 GCAGCCTCGC
Statistics
Matches: 112, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
26 12 0.11
27 96 0.86
28 4 0.04
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:25762 original size:39 final size:39
Alignment explanation
Indices: 25718--26032 Score: 504
Period size: 39 Copynumber: 8.1 Consensus size: 39
25708 ATTATATTAT
* *
25718 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
25757 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
25796 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * * *
25835 CAGCACGAAGCCTGCAGGACTTTGGCCCGAATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * * * *
25874 CAGCATGAAGCCTGCGAGACTTTGGCCCAGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
25913 CAGCACGAAGCCTGCGGGACTTTGGCCCAGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
25952 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
25991 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
26030 CAG
1 CAG
26033 TGTCTTGCAT
Statistics
Matches: 258, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 258 1.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:34691 original size:40 final size:40
Alignment explanation
Indices: 34617--34838 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
34607 AACCCAAGTA
* *
34617 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * *
34656 CCTTCGGGTCTTAGCTCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
34696 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
34736 CCTTCGAGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
34776 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
34816 CCTTTGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
34839 CATTCGAATA
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 12 0.07
40 153 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:37398 original size:40 final size:40
Alignment explanation
Indices: 37343--37519 Score: 309
Period size: 40 Copynumber: 4.4 Consensus size: 40
37333 TGTGCATAGT
*
37343 ATTCGTGCGGGTTATTTTAACCGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
*
37383 ATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
* *
37423 ATTCGTGTGGGTTATTATAACCGGGCTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
37463 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
*
37503 ATTCGTGCTGGTTATTA
1 ATTCGTGCGGGTTATTA
37520 CATCCGAGCC
Statistics
Matches: 130, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 130 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.29
Consensus pattern (40 bp):
ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
Found at i:48854 original size:40 final size:40
Alignment explanation
Indices: 48799--48975 Score: 309
Period size: 40 Copynumber: 4.4 Consensus size: 40
48789 TGTGCATAGT
*
48799 ATTCGTGCGGGTTATTTTAACCGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
*
48839 ATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
* *
48879 ATTCGTGCAGGTTATTATAACCGGGCTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
48919 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
*
48959 ATTCGTGCTGGTTATTA
1 ATTCGTGCGGGTTATTA
48976 CATCCGAGCC
Statistics
Matches: 130, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 130 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (40 bp):
ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
Found at i:48995 original size:80 final size:80
Alignment explanation
Indices: 48829--48995 Score: 262
Period size: 80 Copynumber: 2.1 Consensus size: 80
48819 CCGGGTTAAG
48829 TCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGCATTCGTGCAGGTTAT
1 TCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGCATTCGTGCAGGTTAT
* * * *
48894 TATAACCGGGCTAAG
66 TACAACCGAGCCAAA
* *
48909 TCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTAT
1 TCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGCATTCGTGCAGGTTAT
*
48974 TACATCCGAGCCAAA
66 TACAACCGAGCCAAA
*
48989 TTCCGAA
1 TCCCGAA
48996 AGTATTTATG
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGCATTCGTGCAGGTTAT
TACAACCGAGCCAAA
Found at i:63351 original size:27 final size:26
Alignment explanation
Indices: 63321--63710 Score: 158
Period size: 27 Copynumber: 14.7 Consensus size: 26
63311 ACTCAACTTG
*
63321 TAAAATTACCAATGTACCCTCGATTTA
1 TAAAATTACCAA-ATACCCTCGATTTA
* *
63348 TAAAATTATCCAAATATCCTCGATTTG
1 TAAAATTA-CCAAATACCCTCGATTTA
* *
63375 TAAAATTACTGAAATA------A--GA
1 TAAAATTAC-CAAATACCCTCGATTTA
* **
63394 TAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCA-AATACCCTCGATTTA
* * ** *
63421 CAGAATTACCATTTTACTCTCGATTTA
1 TAAAATTACCA-AATACCCTCGATTTA
* ** * *
63448 CAAAATTATTGAAATACCCTTGGTTTA
1 TAAAATTA-CCAAATACCCTCGATTTA
* * **
63475 CAAAATTACCCAAATACCATCGATCAA
1 TAAAATTA-CCAAATACCCTCGATTTA
*
63502 TAAAATTACCAAAATACCC-CTGATTTG
1 TAAAATTACC-AAATACCCTC-GATTTA
* * *
63529 TAAAATTACCAAAATACCTTTGGTTTA
1 TAAAATTACC-AAATACCCTCGATTTA
* *
63556 TAAAATTACCAAAATACCC-CTGGTTTG
1 TAAAATTACC-AAATACCCTC-GATTTA
* * *
63583 TAAAATTACTAAAATACCCTTTGCTTTA
1 TAAAATTAC-CAAATACCC-TCGATTTA
* *
63611 TAAAATTACCAAAATACCCT-TAGTTTG
1 TAAAATTACC-AAATACCCTCGA-TTTA
* *
63638 TAAAATTACCAAAATATCCCTAG-TTTG
1 TAAAATTACC-AAATA-CCCTCGATTTA
* *
63665 TAAAATTATCGAAATACCC-CTGATTTG
1 TAAAATTA-CCAAATACCCTC-GATTTA
*
63692 TGAAATTACCGAAATACCC
1 TAAAATTACC-AAATACCC
63711 CTGTAGGGTA
Statistics
Matches: 282, Mismatches: 54, Indels: 54
0.72 0.14 0.14
Matches are distributed among these distances:
18 1 0.00
19 10 0.04
21 1 0.00
25 1 0.00
26 9 0.03
27 229 0.81
28 31 0.11
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (26 bp):
TAAAATTACCAAATACCCTCGATTTA
Found at i:63559 original size:54 final size:55
Alignment explanation
Indices: 63501--63710 Score: 284
Period size: 54 Copynumber: 3.9 Consensus size: 55
63491 CCATCGATCA
63501 ATAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATA-CCTTTGGTTT
1 ATAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTTGGTTT
* * *
63555 ATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGCTTT
1 ATAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTTGGTTT
* *
63610 ATAAAATTACCAAAATA-CCCTTAGTTTGTAAAATTACCAAAATATCCC--TAGTTT
1 ATAAAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATA-CCCTTTGGTTT
* * * * *
63664 GTAAAATTATCGAAATACCCCTGATTTGTGAAATTACCGAAATACCC
1 ATAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC
63711 CTGTAGGGTA
Statistics
Matches: 138, Mismatches: 14, Indels: 9
0.86 0.09 0.06
Matches are distributed among these distances:
53 3 0.02
54 82 0.59
55 50 0.36
56 3 0.02
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (55 bp):
ATAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTTGGTTT
Found at i:63649 original size:109 final size:109
Alignment explanation
Indices: 63501--63710 Score: 298
Period size: 109 Copynumber: 1.9 Consensus size: 109
63491 CCATCGATCA
* *
63501 ATAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATA-CCTTTGGTTTATAAAATTAC
1 ATAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATATCC-CTAGTTTATAAAATTAC
* *
63565 CAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGCTTT
65 CAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTTGCTTT
* * *
63610 ATAAAATTACCAAAATA-CCCTTAGTTTGTAAAATTACCAAAATATCCCTAGTTTGTAAAATTAT
1 ATAAAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATATCCCTAGTTTATAAAATTAC
* * *
63674 CGAAATACCCCTGATTTGTGAAATTACCGAAATACCC
65 CAAAATACCCCTGATTTGTAAAATTACCAAAATACCC
63711 CTGTAGGGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
108 5 0.06
109 82 0.92
110 2 0.02
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (109 bp):
ATAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATATCCCTAGTTTATAAAATTACC
AAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTTGCTTT
Found at i:63711 original size:27 final size:27
Alignment explanation
Indices: 63502--63848 Score: 258
Period size: 27 Copynumber: 12.8 Consensus size: 27
63492 CATCGATCAA
63502 TAAAATTACCAAAATACCCCTGATTTG
1 TAAAATTACCAAAATACCCCTGATTTG
** * *
63529 TAAAATTACCAAAATACCTTTGGTTTA
1 TAAAATTACCAAAATACCCCTGATTTG
*
63556 TAAAATTACCAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTGATTTG
* * * *
63583 TAAAATTACTAAAATACCCTTTGCTTTA
1 TAAAATTACCAAAATACCC-CTGATTTG
*
63611 TAAAATTACCAAAATA-CCCTTAGTTTG
1 TAAAATTACCAAAATACCCCTGA-TTTG
*
63638 TAAAATTACCAAAATATCCCT-AGTTTG
1 TAAAATTACCAAAATACCCCTGA-TTTG
* *
63665 TAAAATTATCGAAATACCCCTGATTTG
1 TAAAATTACCAAAATACCCCTGATTTG
* * **
63692 TGAAATTACCGAAATACCCCTG-TAGGG
1 TAAAATTACCAAAATACCCCTGAT-TTG
* * **
63719 TAGAATTACCGAAATACCCCTG-TAGGG
1 TAAAATTACCAAAATACCCCTGAT-TTG
* * ** **
63746 TAGAATTATCGCAATACCCCTG-TAGAG
1 TAAAATTACCAAAATACCCCTGAT-TTG
* **
63773 TAAAATTACCGAAATACCCCTG-TAGGG
1 TAAAATTACCAAAATACCCCTGAT-TTG
* **
63800 TAGAATTACCAAAATACCCCT-ATAGGG
1 TAAAATTACCAAAATACCCCTGAT-TTG
* *
63827 TAGAATTACCGAAATACCCCTG
1 TAAAATTACCAAAATACCCCTG
63849 TAGGGTAGAA
Statistics
Matches: 278, Mismatches: 35, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.01
27 251 0.90
28 25 0.09
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.29
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTGATTTG
Found at i:63753 original size:81 final size:80
Alignment explanation
Indices: 63668--63930 Score: 339
Period size: 81 Copynumber: 3.2 Consensus size: 80
63658 TAGTTTGTAA
* *
63668 AATTATCGAAATACCCCTGATTTGTGAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
1 AATTACCGAAATACCCCTG-TTAGTGAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
63733 TACCCCTGTAGGGTAG
65 TACCCCTGTAGGGTAG
* * * * *
63749 AATTATCGCAATACCCCTGTAGAGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAA
1 AATTACCGAAATACCCCTGT-TAGTGAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
*
63814 TACCCCTATAGGGTAG
65 TACCCCTGTAGGGTAG
* * * * *
63830 AATTACCGAAATACCCCTG-TAGGGTAGAATTATCGCAATACCCCTGTAGGGTAAAATTACTGAA
1 AATTACCGAAATACCCCTGTTAGTG-A-AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAA
* *
63894 AAACCCCTGTAAGGTAG
64 ATACCCCTGTAGGGTAG
*
63911 ACTTACCGAAATACCCCTGT
1 AATTACCGAAATACCCCTGT
63931 AGGGTGGAAT
Statistics
Matches: 158, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 2 0.01
80 2 0.01
81 154 0.97
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (80 bp):
AATTACCGAAATACCCCTGTTAGTGAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAAT
ACCCCTGTAGGGTAG
Found at i:63852 original size:27 final size:27
Alignment explanation
Indices: 63695--63970 Score: 376
Period size: 27 Copynumber: 10.3 Consensus size: 27
63685 TGATTTGTGA
63695 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
63722 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
63749 AATTATCGCAATACCCCTGTAGAGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
63776 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
63803 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
63830 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
63857 AATTATCGCAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
63884 AATTACTGAAAAACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
63911 ACTTACCGAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
63938 AATTACC-AAGATA-CCTTGTGGGGTAA
1 AATTACCGAA-ATACCCCTGTAGGGTAG
63964 AATTACC
1 AATTACC
63971 ATTTTTCCCC
Statistics
Matches: 217, Mismatches: 31, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
26 18 0.08
27 199 0.92
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:64449 original size:22 final size:22
Alignment explanation
Indices: 64397--64461 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
64387 TTAAAGCCTT
* *
64397 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
64419 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* * *
64441 TTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
64462 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:71907 original size:26 final size:26
Alignment explanation
Indices: 71878--71985 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
71868 TGGTACAAAT
71878 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * **
71904 TGATAATGGATTAGGTAACTAATCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
71930 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
71956 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
71982 TGAT
1 TGAT
71986 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:74282 original size:41 final size:41
Alignment explanation
Indices: 74229--74378 Score: 203
Period size: 41 Copynumber: 3.7 Consensus size: 41
74219 CGCTGACTCA
* * *
74229 AAAAGCCCTTCGAGACCAAGCTTGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
74270 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
*
74310 AAAAGCCCTTTGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
74351 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
74379 TAAACCCCAA
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 60 0.66
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:82537 original size:41 final size:41
Alignment explanation
Indices: 82484--82632 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
82474 CGCTGACTCA
* *
82484 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
82525 GAAGGCCCTTCGAAACTAGGTTC-G-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
82564 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
82605 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
82633 TAAACCCCAA
Statistics
Matches: 92, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
39 30 0.33
40 2 0.02
41 60 0.65
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:85344 original size:27 final size:27
Alignment explanation
Indices: 85304--85444 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
85294 AGGAAGCGTC
*
85304 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
85331 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
85357 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
85385 CTGGTGGCACTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
85412 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
85439 CTGGTG
1 CTGGTG
85445 ACTTCGTCAA
Statistics
Matches: 100, Mismatches: 7, Indels: 14
0.83 0.06 0.12
Matches are distributed among these distances:
26 11 0.11
27 85 0.85
28 4 0.04
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:85383 original size:54 final size:54
Alignment explanation
Indices: 85301--85444 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
85291 TGGAGGAAGC
*
85301 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCT
85355 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCT
* *
85409 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
85445 ACTTCGTCAA
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 6 0.07
54 80 0.93
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.33
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCT
Found at i:85458 original size:27 final size:26
Alignment explanation
Indices: 85304--85462 Score: 104
Period size: 27 Copynumber: 5.9 Consensus size: 26
85294 AGGAAGCGTC
* * * *
85304 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCA-AAATATCTGTT
* * *
85331 CTGGTGGCTCTGCCACATATATCTGTC
1 CTGGTGACTCTGCCA-AAATATCTGTT
* * * *
85358 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCA-AAATATCTGTT
* * *
85385 CTGGTGGCACTGCCACATATATCTGTT
1 CTGGTGACTCTGCCA-AAATATCTGTT
* *
85412 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCAAAATATCTGT-T
*
85439 CTGGTGACT-TCGTCAAAATATCTG
1 CTGGTGACTCT-GCCAAAATATCTG
85463 GCAGCCTCGT
Statistics
Matches: 109, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 9 0.08
27 100 0.92
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (26 bp):
CTGGTGACTCTGCCAAAATATCTGTT
Found at i:87679 original size:44 final size:46
Alignment explanation
Indices: 87499--87711 Score: 196
Period size: 46 Copynumber: 4.8 Consensus size: 46
87489 TGTAATCCGC
* * *
87499 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* * * *
87545 CCATAAGTGAACTCAGACTCAACTCAACGAGCTT-GGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACG-CTCGCAT
* *** * *
87591 ACATCTCTCGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
87637 CCATAAGTGAACTC-GACTCAACTCAACGAGTTCGGAC-CTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
87681 CC------GAACTCGAACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
87712 TGCCCAAATA
Statistics
Matches: 136, Mismatches: 24, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
38 6 0.04
39 21 0.15
44 28 0.21
45 9 0.07
46 45 0.33
47 27 0.20
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:94147 original size:27 final size:27
Alignment explanation
Indices: 94088--94149 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
94078 GCAATATCCG
94088 ATTTTACCATACAAGGGTATTACGGTC
1 ATTTTACCATACAAGGGTATTACGGTC
* * *
94115 ACTTTACCCTACAGGGGCT-TTACGGTC
1 ATTTTACCATACAAGGG-TATTACGGTC
*
94142 TTTTTACC
1 ATTTTACC
94150 TATTAGGGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (27 bp):
ATTTTACCATACAAGGGTATTACGGTC
Found at i:94233 original size:27 final size:27
Alignment explanation
Indices: 94180--94428 Score: 165
Period size: 27 Copynumber: 9.3 Consensus size: 27
94170 TTTCATCCTA
* * * *
94180 CAAGGGTGTTTTGGTAAATTTACAAAC
1 CAAGGGTATTTTAGTAATTTTGCAAAC
*
94207 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTGCAAAC
* *
94234 CAATGGTATTTCTA-TAATTTCTAG-AAAGT
1 CAAGGGTATTT-TAGTAATTT-T-GCAAA-C
* *
94263 CAAGGGTATTTTTA-TAATTTTG-TAAT
1 CAAGGGTA-TTTTAGTAATTTTGCAAAC
* * * *
94289 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTGCAAAC
** *
94316 TGAGGGTA-TTTCGTAA-TTT-CACAA-
1 CAAGGGTATTTTAGTAATTTTGCA-AAC
* *
94340 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTAGTAATTTTGCAAAC
* * *
94367 TAAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTGCAAAC
* *
94394 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTGCAAAC
94421 CAAGGGTA
1 CAAGGGTA
94429 AAATGGTAAT
Statistics
Matches: 183, Mismatches: 25, Indels: 28
0.78 0.11 0.12
Matches are distributed among these distances:
23 2 0.01
24 6 0.03
25 16 0.09
26 27 0.15
27 104 0.57
28 9 0.05
29 16 0.09
30 3 0.02
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTGCAAAC
Found at i:94568 original size:26 final size:27
Alignment explanation
Indices: 94407--94557 Score: 179
Period size: 27 Copynumber: 5.8 Consensus size: 27
94397 GGGTATTTTA
* *
94407 GTAATTTTGTAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
94434 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
94461 ATAATTCTGTAAATTGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
94488 GT-ATTCTATAAATCGA-GGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
94513 GTAA-TC--TAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
94537 GTAATTCT-TAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
94558 CTTTGGTAAT
Statistics
Matches: 108, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
23 7 0.06
24 13 0.12
25 13 0.12
26 25 0.23
27 50 0.46
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:100616 original size:25 final size:25
Alignment explanation
Indices: 100588--100678 Score: 82
Period size: 24 Copynumber: 3.6 Consensus size: 25
100578 TTTGGTTTAC
*
100588 AAAATTACCAAAATACTTAGTTTGT
1 AAAATTACCAAAATACTCAGTTTGT
100613 AAAA-TACCAAAATAC-CACTGTTTGT
1 AAAATTACCAAAATACTCA--GTTTGT
* * *
100638 GAAATTACCGAAATATCCTCAATTTGT
1 AAAATTACC-AAA-ATACTCAGTTTGT
100665 -AAATTA-CAAAATAC
1 AAAATTACCAAAATAC
100679 CCCTAATTTA
Statistics
Matches: 55, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
23 4 0.07
24 14 0.25
25 14 0.25
26 10 0.18
27 8 0.15
28 3 0.05
29 2 0.04
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.31
Consensus pattern (25 bp):
AAAATTACCAAAATACTCAGTTTGT
Found at i:100686 original size:25 final size:26
Alignment explanation
Indices: 100589--100687 Score: 82
Period size: 26 Copynumber: 3.9 Consensus size: 26
100579 TTGGTTTACA
* *
100589 AAATTACCAAAATA--CTTAGTTTGT
1 AAATTACCAAAATACCCCTAATTTGT
* * *
100613 AAAATACCAAAATACCACT-GTTTGT
1 AAATTACCAAAATACCCCTAATTTGT
* *
100638 GAAATTACCGAAATA-TCCTCAATTTGT
1 -AAATTACCAAAATACCCCT-AATTTGT
100665 AAATTA-CAAAATACCCCTAATTT
1 AAATTACCAAAATACCCCTAATTT
100688 AAAAATTATT
Statistics
Matches: 59, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
24 13 0.22
25 19 0.32
26 22 0.37
27 5 0.08
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.32
Consensus pattern (26 bp):
AAATTACCAAAATACCCCTAATTTGT
Found at i:100722 original size:28 final size:26
Alignment explanation
Indices: 100685--100766 Score: 83
Period size: 28 Copynumber: 3.0 Consensus size: 26
100675 ATACCCCTAA
100685 TTTAAAAATTATTGAAATACCCTTGAC
1 TTTAAAAATTATTGAAATACCCTTG-C
* * *
100712 TTCTAAAAATTATAGAAAATACCATTGG
1 TT-TAAAAATTATTG-AAATACCCTTGC
*
100740 TTTACAACAATTACTGAAATACCCTTG
1 TTTA-AA-AATTATTGAAATACCCTTG
100767 GTTTGTAGAT
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
27 4 0.09
28 25 0.56
29 16 0.36
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (26 bp):
TTTAAAAATTATTGAAATACCCTTGC
Done.