genome.fa.s2398.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2272
Parameters: 2 7 7 80 10 50 1000
Length:  41491

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9296--12216	382	7.6	386	97	1	5428	30	13	20	35	1.91
9296--12216	193	15.2	193	96	1	5428	30	13	20	35	1.91
11772--11968	74	2.7	73	84	4	231	27	13	19	39	1.89
12133--12338	54	3.5	54	67	17	160	27	14	21	36	1.92
12056--12374	123	2.6	123	94	1	548	26	14	21	36	1.92
12358--12391	16	2.1	17	88	5	52	17	11	5	64	1.45
12297--12710	194	2.2	182	82	11	477	27	17	18	37	1.93
12297--12555	91	2.9	88	82	10	309	26	18	18	37	1.93
12654--12820	54	3.1	54	86	8	234	28	15	17	38	1.90
13235--13282	17	2.8	17	76	23	55	31	16	10	41	1.82
13345--13409	17	3.8	18	76	8	64	36	12	12	38	1.80
13335--13426	39	2.6	36	86	10	118	39	11	10	38	1.77
13396--13452	28	2.0	29	93	3	98	33	8	14	43	1.76
13422--13684	17	14.1	18	72	14	108	32	11	10	45	1.75
13605--13682	20	4.1	20	79	18	87	37	14	8	39	1.77
13618--13700	38	2.2	38	84	4	105	36	12	9	42	1.75
16326--16670	172	2.0	172	98	1	665	30	13	17	39	1.88
19769--19794	5	5.2	5	100	0	52	38	0	0	61	0.96
20088--20131	18	2.4	18	88	0	61	56	0	0	43	0.99
21859--21902	23	1.9	23	90	0	70	54	0	0	45	0.99
25263--25304	22	1.9	22	90	0	66	59	16	14	9	1.60
30769--30809	21	2.0	21	95	4	75	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30773--30817	20	2.2	21	84	4	56	33	0	6	60	1.23
31614--31646	12	2.8	12	86	4	50	27	0	9	63	1.24
31868--32096	43	5.5	42	79	6	209	25	20	26	27	1.99
31888--32096	87	2.5	80	80	7	213	25	20	26	27	1.99
31972--32093	37	3.1	37	85	8	145	21	22	30	26	1.99
35047--35295	50	4.8	50	85	4	284	20	29	24	26	1.99
35046--35295	100	2.4	104	88	6	357	20	29	24	26	1.99
35390--35421	13	2.5	13	94	0	55	56	12	0	31	1.37
35633--35690	30	1.9	30	89	0	89	31	24	3	41	1.71

Tables:   1

The End!