Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2828

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7712
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29


Found at i:6198 original size:28 final size:27

Alignment explanation


    Indices: 6078--6231  Score: 246
    Period size: 25  Copynumber: 5.8  Consensus size: 27

       6068 GCACACTCAG

                                   *   
       6078 ATCAACTCGCACAC-TAGTGCTATATA
          1 ATCAACTCGCACACTTAGTGCTACATA

                                       
       6104 ATCAACTCGCACACTTAGTGCTACATA
          1 ATCAACTCGCACACTTAGTGCTACATA

                                       
       6131 AT-AA-TCGCACACTTAGTGCTACATA
          1 ATCAACTCGCACACTTAGTGCTACATA

                                       
       6156 AT--ACTCGCACACTTAGTGCTACATA
          1 ATCAACTCGCACACTTAGTGCTACATA

                                        
       6181 ATCAAACTCGCACACTTAGTGCTACATA
          1 ATC-AACTCGCACACTTAGTGCTACATA

                                   
       6209 ATCAAACTCGCACACTTAGTGCT
          1 ATC-AACTCGCACACTTAGTGCT

       6232 GTACAATTTA


Statistics
Matches: 122,  Mismatches: 1, Indels: 8
        0.93            0.01        0.06

Matches are distributed among these distances:
  24    1  0.01
  25   46  0.38
  26   16  0.13
  27   13  0.11
  28   46  0.38

ACGTcount: A:0.34, C:0.28, G:0.12, T:0.27


Consensus pattern (27 bp):   
ATCAACTCGCACACTTAGTGCTACATA
Done.