Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 1 of 226
Found at i:1800 original size:22 final size:23
Alignment explanation
Indices: 1775--1905 Score: 99
Period size: 25 Copynumber: 5.4 Consensus size: 23
1765 TGCACTAATG
**
1775 AACAGAGAGCACAGGTGTGCT-A
1 AACAGAGAGCACAGACGTGCTAA
*
1797 AACAGAGAGCACTGACGTGCTAA
1 AACAGAGAGCACAGACGTGCTAA
1820 AATCAGAGAGCACCA-ACGTGCTAGTA
1 AA-CAGAGAGCA-CAGACGTGCTA--A
**
1846 GTCAGAGAGCACCA-ACGTGCTAA
1 AACAGAGAGCA-CAGACGTGCTAA
1869 TAATCAGAGAGCACCA-ACGTGCTAA
1 -AA-CAGAGAGCA-CAGACGTGCTAA
1894 TAATCAGAGAGC
1 -AA-CAGAGAGC
1906 GCACTAAAGT
Statistics
Matches: 94, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
22 18 0.19
23 4 0.04
24 17 0.18
25 54 0.57
26 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.25, T:0.15
Consensus pattern (23 bp):
AACAGAGAGCACAGACGTGCTAA
Found at i:1856 original size:25 final size:25
Alignment explanation
Indices: 1799--1905 Score: 171
Period size: 25 Copynumber: 4.3 Consensus size: 25
1789 GTGTGCTAAA
**
1799 CAGAGAGCACTGACGTGCTAA-AAT
1 CAGAGAGCACCAACGTGCTAATAAT
* *
1823 CAGAGAGCACCAACGTGCTAGTAGT
1 CAGAGAGCACCAACGTGCTAATAAT
1848 CAGAGAGCACCAACGTGCTAATAAT
1 CAGAGAGCACCAACGTGCTAATAAT
1873 CAGAGAGCACCAACGTGCTAATAAT
1 CAGAGAGCACCAACGTGCTAATAAT
1898 CAGAGAGC
1 CAGAGAGC
1906 GCACTAAAGT
Statistics
Matches: 76, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
24 18 0.24
25 58 0.76
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.15
Consensus pattern (25 bp):
CAGAGAGCACCAACGTGCTAATAAT
Found at i:2912 original size:16 final size:16
Alignment explanation
Indices: 2891--2927 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
2881 GTTTTATCTA
2891 TATAATAATATAATAT
1 TATAATAATATAATAT
2907 TATAATAATATAATAT
1 TATAATAATATAATAT
*
2923 AATAA
1 TATAA
2928 CTTACTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TATAATAATATAATAT
Found at i:2927 original size:8 final size:8
Alignment explanation
Indices: 2890--2921 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
2880 TGTTTTATCT
2890 ATATAATA
1 ATATAATA
2898 ATATAATA
1 ATATAATA
*
2906 TTATAATA
1 ATATAATA
2914 ATATAATA
1 ATATAATA
2922 TAATAACTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
ATATAATA
Found at i:11383 original size:27 final size:27
Alignment explanation
Indices: 11353--11483 Score: 97
Period size: 28 Copynumber: 4.8 Consensus size: 27
11343 ACAATTGATA
*
11353 AAAACAACT-AAACCCTAAAAATTTAAC
1 AAAACAA-TAAAACCCTAAAAATCTAAC
* **
11380 AAAACAATAAAATCCT-AAAATCTAGT
1 AAAACAATAAAACCCTAAAAATCTAAC
* * *
11406 AAAACAATGAAACCCTAAAAATCCAAAA
1 AAAACAATAAAACCCTAAAAAT-CTAAC
* *
11434 AAAACAATGAAAA-CCTAGAAATCTTAC
1 AAAACAAT-AAAACCCTAAAAATCTAAC
* * *
11461 AATAATAACAAAACCTTAAAAAT
1 AA-AACAATAAAACCCTAAAAAT
11484 TCGATAAGAA
Statistics
Matches: 80, Mismatches: 18, Indels: 11
0.73 0.17 0.10
Matches are distributed among these distances:
26 22 0.28
27 26 0.32
28 29 0.36
29 3 0.04
ACGTcount: A:0.60, C:0.18, G:0.03, T:0.18
Consensus pattern (27 bp):
AAAACAATAAAACCCTAAAAATCTAAC
Found at i:11383 original size:28 final size:27
Alignment explanation
Indices: 11316--11462 Score: 79
Period size: 28 Copynumber: 5.4 Consensus size: 27
11306 GTGTCAAATT
* *
11316 AAAATTT-CAATAAA-AATGAATCCTTA
1 AAAATTTACAA-AAACAATGAAACCCTA
* *
11342 AACAATTGATAAAAACAACT-AAACCCTA
1 AA-AATTTACAAAAACAA-TGAAACCCTA
* *
11370 AAAATTTA-ACAAAACAATAAAATCCT-
1 AAAATTTACA-AAAACAATGAAACCCTA
* **
11396 AAAATCTAGTAAAACAATGAAACCCTA
1 AAAATTTACAAAAACAATGAAACCCTA
** * *
11423 AAAATCCAAAAAAAACAATGAAAACCTA
1 AAAAT-TTACAAAAACAATGAAACCCTA
*
11451 GAAATCTTACAA
1 AAAAT-TTACAA
11463 TAATAACAAA
Statistics
Matches: 94, Mismatches: 18, Indels: 16
0.73 0.14 0.12
Matches are distributed among these distances:
26 25 0.27
27 30 0.32
28 38 0.40
29 1 0.01
ACGTcount: A:0.59, C:0.17, G:0.04, T:0.20
Consensus pattern (27 bp):
AAAATTTACAAAAACAATGAAACCCTA
Found at i:11399 original size:26 final size:25
Alignment explanation
Indices: 11353--11462 Score: 76
Period size: 27 Copynumber: 4.1 Consensus size: 25
11343 ACAATTGATA
*
11353 AAAACAACTAAACCCTAAAAATTTAAC
1 AAAACAA-TAAACCCT-AAAATCTAAC
* **
11380 AAAACAATAAAATCCTAAAATCTAGT
1 AAAACAAT-AAACCCTAAAATCTAAC
* *
11406 AAAACAATGAAACCCTAAAAATCCAAAA
1 AAAACAAT-AAACCCT-AAAAT-CTAAC
* *
11434 AAAACAATGAAAACCTAGAAATCTTAC
1 AAAACAAT-AAACCCTA-AAATCTAAC
11461 AA
1 AA
11463 TAATAACAAA
Statistics
Matches: 66, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
26 22 0.33
27 23 0.35
28 21 0.32
ACGTcount: A:0.60, C:0.19, G:0.04, T:0.17
Consensus pattern (25 bp):
AAAACAATAAACCCTAAAATCTAAC
Found at i:11495 original size:28 final size:28
Alignment explanation
Indices: 11464--11622 Score: 130
Period size: 28 Copynumber: 5.7 Consensus size: 28
11454 ATCTTACAAT
*
11464 AATAACAAAACCTTAAAAATTCGATAAG
1 AATAGCAAAACCTTAAAAATTCGATAAG
*
11492 AATAGCAAAGCCTTAAAAA-TCTGATAAG
1 AATAGCAAAACCTTAAAAATTC-GATAAG
* ** *
11520 AATAGCGAAATCC-TAAAAAGCCGAAAAG
1 AATAGC-AAAACCTTAAAAATTCGATAAG
* ** *
11548 AACAGTGAAACCTTAAAAA-TCCAGTAAG
1 AATAGCAAAACCTTAAAAATTCGA-TAAG
* * *
11576 AATAGCAAAGCCCT-AAAATTCCCATAA-
1 AATAGCAAAACCTTAAAAATT-CGATAAG
11603 AATAGCAAAACCTTAAAAAT
1 AATAGCAAAACCTTAAAAAT
11623 CTAGTTATGT
Statistics
Matches: 104, Mismatches: 19, Indels: 16
0.75 0.14 0.12
Matches are distributed among these distances:
27 24 0.23
28 71 0.68
29 9 0.09
ACGTcount: A:0.53, C:0.18, G:0.11, T:0.18
Consensus pattern (28 bp):
AATAGCAAAACCTTAAAAATTCGATAAG
Found at i:11537 original size:56 final size:56
Alignment explanation
Indices: 11477--11624 Score: 144
Period size: 56 Copynumber: 2.6 Consensus size: 56
11467 AACAAAACCT
* *
11477 TAAAAATTCGATAAGAATAGCAAAGCCTTAAAAATCTGA-TAAGAATAGCGAAA-TCC
1 TAAAAATTCGATAAGAATAGCAAA-CCTTAAAAATCTCAGTAAGAATAGC-AAAGCCC
** * * *
11533 TAAAAAGCCGAAAAGAACAGTGAAACCTTAAAAATC-CAGTAAGAATAGCAAAGCCC
1 TAAAAATTCGATAAGAATAG-CAAACCTTAAAAATCTCAGTAAGAATAGCAAAGCCC
*
11589 T-AAAATTCCCATAA-AATAGCAAAACCTTAAAAATCT
1 TAAAAATT-CGATAAGAATAGC-AAACCTTAAAAATCT
11625 AGTTATGTAA
Statistics
Matches: 73, Mismatches: 13, Indels: 12
0.74 0.13 0.12
Matches are distributed among these distances:
55 26 0.36
56 44 0.60
57 3 0.04
ACGTcount: A:0.51, C:0.18, G:0.12, T:0.19
Consensus pattern (56 bp):
TAAAAATTCGATAAGAATAGCAAACCTTAAAAATCTCAGTAAGAATAGCAAAGCCC
Found at i:11803 original size:28 final size:27
Alignment explanation
Indices: 11755--11854 Score: 98
Period size: 28 Copynumber: 3.7 Consensus size: 27
11745 TAACGGAACT
11755 CTAAAAATCTAATAATATAACAAAACC
1 CTAAAAATCTAATAATATAACAAAACC
* * *
11782 TTAAAAATCTAGTAGTAATAACAAAACC
1 CTAAAAATCTAATAAT-ATAACAAAACC
* * *
11810 CTAAAAATCCAATAAAATAATGAAAA-C
1 CTAAAAATCTAATAATATAA-CAAAACC
11837 C--AAAATCTAATATATATA
1 CTAAAAATCTAATA-ATATA
11855 TATAGTGAAA
Statistics
Matches: 59, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
25 10 0.17
26 4 0.07
27 19 0.32
28 26 0.44
ACGTcount: A:0.58, C:0.15, G:0.03, T:0.24
Consensus pattern (27 bp):
CTAAAAATCTAATAATATAACAAAACC
Found at i:11915 original size:28 final size:28
Alignment explanation
Indices: 11856--11936 Score: 110
Period size: 29 Copynumber: 2.8 Consensus size: 28
11846 ATATATATAT
*
11856 ATAGTGAAACCTTAAAAAGTCTAGTAGAA
1 ATAGTGAAACCTTAAAAA-TCTAGTAAAA
*
11885 ATAGTGAAATCC-TAAAAATCTGGTAAAA
1 ATAGTGAAA-CCTTAAAAATCTAGTAAAA
11913 ATAGTGAAAACCTTAAAAATCTAG
1 ATAGTG-AAACCTTAAAAATCTAG
11937 ATTGTTTTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
28 16 0.35
29 28 0.61
30 2 0.04
ACGTcount: A:0.49, C:0.11, G:0.15, T:0.25
Consensus pattern (28 bp):
ATAGTGAAACCTTAAAAATCTAGTAAAA
Found at i:13230 original size:34 final size:34
Alignment explanation
Indices: 13182--13250 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
13172 TATAGGCAAA
13182 ATACAAGAGTAATTGAACCCTAATAAAACTCTTT
1 ATACAAGAGTAATTGAACCCTAATAAAACTCTTT
* *
13216 ATACTAGAGTAATTGAACTCTAATAAAACTCTTT
1 ATACAAGAGTAATTGAACCCTAATAAAACTCTTT
13250 A
1 A
13251 AAATTATCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (34 bp):
ATACAAGAGTAATTGAACCCTAATAAAACTCTTT
Found at i:18679 original size:6 final size:6
Alignment explanation
Indices: 18668--18693 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
18658 CAATTTTGAG
18668 AAAAAT AAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AA
18694 TAACAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:18758 original size:12 final size:12
Alignment explanation
Indices: 18741--18770 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
18731 GGTAGGCAAC
18741 TTTTTTTGCAGT
1 TTTTTTTGCAGT
*
18753 TTTTTTTGCGGT
1 TTTTTTTGCAGT
18765 TTTTTT
1 TTTTTT
18771 CGCTTTTTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.07, G:0.17, T:0.73
Consensus pattern (12 bp):
TTTTTTTGCAGT
Found at i:18777 original size:20 final size:21
Alignment explanation
Indices: 18754--18800 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
18744 TTTTGCAGTT
18754 TTTTTTGC-GGTTTTTTTCGC
1 TTTTTTGCGGGTTTTTTTCGC
*
18774 -TTTTTGCGGGTTTTTTTTGC
1 TTTTTTGCGGGTTTTTTTCGC
18794 TATTTTT
1 T-TTTTT
18801 TTAACTCGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 11 0.48
22 5 0.22
ACGTcount: A:0.02, C:0.11, G:0.19, T:0.68
Consensus pattern (21 bp):
TTTTTTGCGGGTTTTTTTCGC
Found at i:18787 original size:32 final size:31
Alignment explanation
Indices: 18743--18802 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 31
18733 TAGGCAACTT
*
18743 TTTTTGCAGTTTTTTTTGCGGTTTTTTTCGC
1 TTTTTGCAGTTTTTTTTGCGATTTTTTTCGC
* *
18774 TTTTTGCGGGTTTTTTTTGCTATTTTTTT
1 TTTTTGC-AGTTTTTTTTGCGATTTTTTT
18803 AACTCGTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.03, C:0.10, G:0.18, T:0.68
Consensus pattern (31 bp):
TTTTTGCAGTTTTTTTTGCGATTTTTTTCGC
Found at i:19301 original size:34 final size:34
Alignment explanation
Indices: 19258--19360 Score: 188
Period size: 34 Copynumber: 3.0 Consensus size: 34
19248 TATAGGGAAA
19258 ATACAAGAGTAATTGAACCCTAATAAAACTCTTT
1 ATACAAGAGTAATTGAACCCTAATAAAACTCTTT
**
19292 ATACAAGAGTAATTGAACCCTAATAAAACTCGCT
1 ATACAAGAGTAATTGAACCCTAATAAAACTCTTT
19326 ATACAAGAGTAATTGAACCCTAATAAAACTCTTT
1 ATACAAGAGTAATTGAACCCTAATAAAACTCTTT
19360 A
1 A
19361 CAATTATCTA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 65 1.00
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.27
Consensus pattern (34 bp):
ATACAAGAGTAATTGAACCCTAATAAAACTCTTT
Found at i:22110 original size:23 final size:23
Alignment explanation
Indices: 22076--22132 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
22066 TTATACGAGC
*
22076 TTACTA-TGTAATATCCCGAAAA
1 TTACTACTGTAATACCCCGAAAA
22098 TTACTACTGTAATACCCCGAAAA
1 TTACTACTGTAATACCCCGAAAA
*
22121 TTACTACAGTAA
1 TTACTACTGTAA
22133 GAAAGTAGGT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 6 0.19
23 26 0.81
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (23 bp):
TTACTACTGTAATACCCCGAAAA
Found at i:26378 original size:47 final size:46
Alignment explanation
Indices: 26291--26379 Score: 142
Period size: 47 Copynumber: 1.9 Consensus size: 46
26281 TTGATGTAAG
** *
26291 TAAAAGCCTGAGTCAAATAGATAAGGAACTGAAAGTTGGTGCATTT
1 TAAAAGCCTGAGTCAAATAGATAAGGAACCAAAAGCTGGTGCATTT
26337 TAAAAGCCTGAGCTCAAATAGATAAGGAACCAAAAGCTGGTGC
1 TAAAAGCCTGAG-TCAAATAGATAAGGAACCAAAAGCTGGTGC
26380 GTTGGGTGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
46 12 0.31
47 27 0.69
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
TAAAAGCCTGAGTCAAATAGATAAGGAACCAAAAGCTGGTGCATTT
Found at i:27015 original size:6 final size:6
Alignment explanation
Indices: 27003--27037 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
26993 TAGGTTTACT
* *
27003 AAAATG GAAATG GAAATG AAAATG AAAATG AAAAT
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAAT
27038 CGAATCGATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (6 bp):
AAAATG
Found at i:36467 original size:24 final size:24
Alignment explanation
Indices: 36434--36479 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
36424 TGCTTCCCAA
36434 TAATTACTCTTCAGAGCTACCCGT
1 TAATTACTCTTCAGAGCTACCCGT
* *
36458 TAATTGCTCTTTAGAGCTACCC
1 TAATTACTCTTCAGAGCTACCC
36480 ATTATAGGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.35
Consensus pattern (24 bp):
TAATTACTCTTCAGAGCTACCCGT
Found at i:38739 original size:30 final size:30
Alignment explanation
Indices: 38681--38741 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
38671 ATTTCCGAGC
*
38681 TTGGGGACAAAAGTGTAATTATGCAAAAGT
1 TTGGGGACAAAAGTGTAATTATGAAAAAGT
* * * *
38711 TTGGGGGCAAAATTGTAATTTTTAAAAAGT
1 TTGGGGACAAAAGTGTAATTATGAAAAAGT
38741 T
1 T
38742 GGGTGGTGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.33
Consensus pattern (30 bp):
TTGGGGACAAAAGTGTAATTATGAAAAAGT
Found at i:39194 original size:75 final size:75
Alignment explanation
Indices: 39103--39276 Score: 303
Period size: 75 Copynumber: 2.3 Consensus size: 75
39093 ATTCCCCCGA
* * *
39103 GGGGTTACTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCATATCTT
39168 AAATGTGAAG
66 AAATGTGAAG
*
39178 GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCATATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCATATCTT
39243 AAATGTGAAG
66 AAATGTGAAG
*
39253 GGGGCTGCTAAGTGCTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
39277 CGAGGGGTTG
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 94 1.00
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.32
Consensus pattern (75 bp):
GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCATATCTT
AAATGTGAAG
Found at i:39197 original size:42 final size:41
Alignment explanation
Indices: 39138--39274 Score: 155
Period size: 42 Copynumber: 3.5 Consensus size: 41
39128 AATCATTGGT
39138 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCCACCGTA-TTTAAATGTGAAGGG
* * *
39180 GGTTGCTAAGTGCTGATTCC-CCG-A-CT-CAT-T---GGT
1 GGTTGCTAAGTGCTGATTCCACCGTATTTAAATGTGAAGGG
*
39213 GGTTGCTAAGTGCTGATTCCACCATATCTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCCACCGTAT-TTAAATGTGAAGGG
*
39255 GGCTGCTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
39275 CCCGAGGGGT
Statistics
Matches: 78, Mismatches: 8, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
33 22 0.28
34 2 0.03
35 1 0.01
36 1 0.01
37 3 0.04
38 3 0.04
39 1 0.01
40 1 0.01
41 3 0.04
42 41 0.53
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (41 bp):
GGTTGCTAAGTGCTGATTCCACCGTATTTAAATGTGAAGGG
Found at i:39284 original size:102 final size:102
Alignment explanation
Indices: 39178--39378 Score: 339
Period size: 102 Copynumber: 2.0 Consensus size: 102
39168 AAATGTGAAG
* **
39178 GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCATATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGAACCCACCATATCTT
*
39243 AAATGTGAAGGGGGCTGCTAAGTGCTGATTCCCCCGA
66 AAATGTGAAAGGGGCTGCTAAGTGCTGATTCCCCCGA
* *
39280 GGGGTTGCTAAGTGTTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGAACCCACCGTATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGAACCCACCATATCTT
*
39345 AAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCC
66 AAATGTGAAAGGGGCTGCTAAGTGCTGATTCCCC
39379 GACTCATTGG
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
102 92 1.00
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.30
Consensus pattern (102 bp):
GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGAACCCACCATATCTT
AAATGTGAAAGGGGCTGCTAAGTGCTGATTCCCCCGA
Found at i:39369 original size:177 final size:177
Alignment explanation
Indices: 39073--39412 Score: 608
Period size: 177 Copynumber: 1.9 Consensus size: 177
39063 ATTGAATAAA
*
39073 AAGGGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTACTAAGTGCTGATTCCCCGAATCATTGGT
1 AAGGGGGCTGCTAAGTGCTGATTCCCCCGAGGGGTTACTAAGTGCTGATTCCCCGAATCATTGGT
** * *
39138 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCG
66 GGTTGCTAAGTGCTGAACCCACCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCG
*
39203 ACTCATTGGTGGTTGCTAAGTGCTGATTCCACCATATCTTAAATGTG
131 ACTCATTGGTGGTTGCTAAGTGCTGAATCCACCATATCTTAAATGTG
* *
39250 AAGGGGGCTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGTTGATTCCCCGAATCATTGGT
1 AAGGGGGCTGCTAAGTGCTGATTCCCCCGAGGGGTTACTAAGTGCTGATTCCCCGAATCATTGGT
39315 GGTTGCTAAGTGCTGAACCCACCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCG
66 GGTTGCTAAGTGCTGAACCCACCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCG
39380 ACTCATTGGTGGTTGCTAAGTGCTGAATCCACC
131 ACTCATTGGTGGTTGCTAAGTGCTGAATCCACC
39413 GATAACGGTT
Statistics
Matches: 155, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
177 155 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (177 bp):
AAGGGGGCTGCTAAGTGCTGATTCCCCCGAGGGGTTACTAAGTGCTGATTCCCCGAATCATTGGT
GGTTGCTAAGTGCTGAACCCACCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCG
ACTCATTGGTGGTTGCTAAGTGCTGAATCCACCATATCTTAAATGTG
Found at i:56588 original size:30 final size:30
Alignment explanation
Indices: 56529--56588 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
56519 AAAATAAGAG
* **
56529 TTAGTGGCAAAATTTAATAAAATTTAAATT
1 TTAGTGGCAAAATTCAATAAAATAAAAATT
* *
56559 TTAGTGGTAAAATTCAATAACATAAAAATT
1 TTAGTGGCAAAATTCAATAAAATAAAAATT
56589 AAGTTACAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.37
Consensus pattern (30 bp):
TTAGTGGCAAAATTCAATAAAATAAAAATT
Found at i:56898 original size:119 final size:122
Alignment explanation
Indices: 56685--56974 Score: 444
Period size: 119 Copynumber: 2.4 Consensus size: 122
56675 TAGTATGATG
* **
56685 ATAAATTATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
* * *
56750 TATATATTATGATTTTAAAAAATTCATATAAGAATATTTAATATTAAGAATTTTA-T
66 CATATATTATGATTTGAAAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
* *
56806 -TAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATA-TTTATAGTA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTA
** *
56868 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATT
65 TCATATATTATGATTTGAAAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
56926 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
56975 ATATGATTAA
Statistics
Matches: 152, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
119 61 0.40
120 46 0.30
121 43 0.28
122 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.49
Consensus pattern (122 bp):
ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
CATATATTATGATTTGAAAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
Found at i:56953 original size:18 final size:19
Alignment explanation
Indices: 56918--56954 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
56908 ATTATTAAGA
56918 ATTTTATTATAAATTATAT
1 ATTTTATTATAAATTATAT
56937 ATTTTAATTA-AAA-TATAT
1 ATTTT-ATTATAAATTATAT
56955 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTTATTATAAATTATAT
Found at i:57184 original size:44 final size:45
Alignment explanation
Indices: 57119--57209 Score: 112
Period size: 45 Copynumber: 2.0 Consensus size: 45
57109 ACCTCTATTC
* * * *
57119 CATTCAACCAAACACAAGATTA-CTGTTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
57163 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
57208 CA
1 CA
57210 CCTCTAATCC
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 19 0.49
45 20 0.51
ACGTcount: A:0.36, C:0.29, G:0.08, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:57211 original size:16 final size:16
Alignment explanation
Indices: 57190--57258 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
57180 GATTAGCTAT
57190 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
57206 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
57223 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
57239 TACATCTCTAATCCAA
1 TACACCTCTAATCCAA
57255 TACA
1 TACA
57259 GCGAACCAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
16 35 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:57232 original size:33 final size:32
Alignment explanation
Indices: 57190--57258 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
57180 GATTAGCTAT
57190 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
57223 TACACCTCTAATCCAATACATCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
57255 TACA
1 TACA
57259 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:57781 original size:30 final size:30
Alignment explanation
Indices: 57734--57791 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
57724 AAAATAATTC
57734 ATATCATAATAAAATTATAAATT-TTTTTGA
1 ATATCATAATAAAATTAT-AATTATTTTTGA
*
57764 ATATC-TAATAATCATTATAATTATTTTT
1 ATATCATAATAA-AATTATAATTATTTTT
57792 AGATGTGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 10 0.40
30 15 0.60
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (30 bp):
ATATCATAATAAAATTATAATTATTTTTGA
Found at i:68961 original size:13 final size:13
Alignment explanation
Indices: 68945--68997 Score: 79
Period size: 13 Copynumber: 4.1 Consensus size: 13
68935 TTTAAACTAA
68945 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
68958 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
* *
68971 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
68984 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
68997 A
1 A
68998 ATGAAGAACT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.36, C:0.28, G:0.08, T:0.28
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:70437 original size:2 final size:2
Alignment explanation
Indices: 70432--70474 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
70422 GGTTTCTCTC
70432 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
70474 T
1 T
70475 TAGTATCAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:75575 original size:224 final size:217
Alignment explanation
Indices: 75191--75627 Score: 687
Period size: 224 Copynumber: 2.0 Consensus size: 217
75181 TTACATTTTT
75191 CTCTCTCTTAGGCAAAGGGTTCTCACGTTTTTCTTTAAAAATTTAAAAAATGTTTGATTAGGAGC
1 CTCTCTCTTAGGCAAAGGGTTCTCACGTTTTTCTTTAAAAATTTAAAAAATGTTTGATTAGGAGC
* *
75256 TTAAATGAAAATTTGTGAAATTTTAAAAGTAATAAAAAATATTTCCATTTAGGACTAGAGATATA
66 TTAAATGAAAACTTGTGAAATTTTAAAAATAATAAAAAATATTTCCATTTAGGACTAGAGATATA
* * *
75321 ATAAACTAAACTAACAATCTGTAGTAAATCTCTCCGTGCATAAAATCGAATAAAAACAAAAACAA
131 ATAAACTAAACTAACAATCCGCAATAAATCTCTCCGTGCATAAAATCGAATAAAAACAAAAACAA
75386 TTTGGTCCTTCCATATGGTTTG
196 TTTGGTCCTTCCATATGGTTTG
* *
75408 CTCTCTCTTAGGCAAAGGGTTCTCACGTTTTTTTTTTTTAAAAA-TTAAAAAATGTTTGATTTGG
1 CTCTCTCTTAGGCAAAGGGTTCTCACG---TTTTTCTTTAAAAATTTAAAAAATGTTTGATTAGG
*
75472 ATCTTTTTAAAATGAAAACTTGTGAAATTTTAAAAATAATAAAAAAATATTTCCATTTAGGACTA
63 AGC---TT-AAATGAAAACTTGTGAAATTTTAAAAATAAT-AAAAAATATTTCCATTTAGGACTA
* * * *
75537 GAGATATAATGAATTAAACTAACAATCCGCAATAAATCTCTCCGTGCATAATATCGAATCAAAAC
123 GAGATATAATAAACTAAACTAACAATCCGCAATAAATCTCTCCGTGCATAAAATCGAATAAAAAC
75602 AAAAACAATTTGGTCCTTCCATATGG
188 AAAAACAATTTGGTCCTTCCATATGG
75628 CAATGGATTT
Statistics
Matches: 200, Mismatches: 12, Indels: 9
0.90 0.05 0.04
Matches are distributed among these distances:
217 27 0.14
219 21 0.10
220 13 0.06
222 2 0.01
223 29 0.14
224 108 0.54
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (217 bp):
CTCTCTCTTAGGCAAAGGGTTCTCACGTTTTTCTTTAAAAATTTAAAAAATGTTTGATTAGGAGC
TTAAATGAAAACTTGTGAAATTTTAAAAATAATAAAAAATATTTCCATTTAGGACTAGAGATATA
ATAAACTAAACTAACAATCCGCAATAAATCTCTCCGTGCATAAAATCGAATAAAAACAAAAACAA
TTTGGTCCTTCCATATGGTTTG
Found at i:88182 original size:24 final size:20
Alignment explanation
Indices: 88131--88170 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
88121 CATTTCATTT
88131 ATGCAATTGCTTTATCCATA
1 ATGCAATTGCTTTATCCATA
88151 ATGCAATTGCTTTATCCATA
1 ATGCAATTGCTTTATCCATA
88171 CCATATTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (20 bp):
ATGCAATTGCTTTATCCATA
Found at i:88486 original size:4 final size:4
Alignment explanation
Indices: 88477--88532 Score: 51
Period size: 4 Copynumber: 13.8 Consensus size: 4
88467 ACTTTTCTCC
* * * *
88477 TTCT TTCT TTCT TTTT TTCTT TTCT TTCT TTC- CTCT CTGT TTCGT TTCT
1 TTCT TTCT TTCT TTCT TTC-T TTCT TTCT TTCT TTCT TTCT TTC-T TTCT
88526 TTCT TTC
1 TTCT TTC
88533 CTTCCTTTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
3 2 0.05
4 33 0.77
5 8 0.19
ACGTcount: A:0.00, C:0.25, G:0.04, T:0.71
Consensus pattern (4 bp):
TTCT
Found at i:88506 original size:9 final size:9
Alignment explanation
Indices: 88480--88551 Score: 58
Period size: 9 Copynumber: 7.8 Consensus size: 9
88470 TTTCTCCTTC
88480 TTTCTTTCT
1 TTTCTTTCT
88489 TTT-TTTCT
1 TTTCTTTCT
88497 TTTCTTTCT
1 TTTCTTTCT
* *
88506 TTCCTCTCT
1 TTTCTTTCT
88515 GTTTCGTTTC-
1 -TTTC-TTTCT
*
88525 TTTCTTTCC
1 TTTCTTTCT
*
88534 TTCCTTTTCT
1 TTTC-TTTCT
88544 ATTTCTTT
1 -TTTCTTT
88552 TTCTTTTACT
Statistics
Matches: 50, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
8 12 0.24
9 22 0.44
10 10 0.20
11 6 0.12
ACGTcount: A:0.01, C:0.25, G:0.03, T:0.71
Consensus pattern (9 bp):
TTTCTTTCT
Found at i:88548 original size:24 final size:23
Alignment explanation
Indices: 88468--88551 Score: 84
Period size: 24 Copynumber: 3.6 Consensus size: 23
88458 GAAACCTTAA
*
88468 CTTTTCTCCTTCTTTCTTT-CTT-
1 CTTTTCT-TTTCTTTCTTTCCTTC
*
88490 TTTTTCTTTTCTTTCTTTCC-TC
1 CTTTTCTTTTCTTTCTTTCCTTC
*
88512 TCTGTTTCGTTTCTTTCTTTCCTTC
1 -CT-TTTCTTTTCTTTCTTTCCTTC
88537 CTTTTCTATTTCTTT
1 CTTTTCT-TTTCTTT
88552 TTCTTTTACT
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
21 11 0.22
22 7 0.14
23 5 0.10
24 26 0.51
25 2 0.04
ACGTcount: A:0.01, C:0.27, G:0.02, T:0.69
Consensus pattern (23 bp):
CTTTTCTTTTCTTTCTTTCCTTC
Found at i:90433 original size:3 final size:3
Alignment explanation
Indices: 90425--90456 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
90415 AAGTTTCTTA
90425 ATT ATT ATT ATT -TT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
90457 TTTAAATTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:93713 original size:50 final size:50
Alignment explanation
Indices: 93654--93765 Score: 138
Period size: 50 Copynumber: 2.2 Consensus size: 50
93644 ATACATGTAT
* *
93654 GCTCATACGAGCT-ATAAACGATAAGCTCCTC-TGAGCTGAAATAACAGTAA
1 GCTCATACGAGCTGAGAAACGATAAGCT-CTCACGAGCTGAAA-AACAGTAA
* * *
93704 GCTCATACGAGCTGAGAATCGATAAGCTCTCACGAGCTGCAAACCAGTAA
1 GCTCATACGAGCTGAGAAACGATAAGCTCTCACGAGCTGAAAAACAGTAA
*
93754 GATCATACGAGC
1 GCTCATACGAGC
93766 CGTGGTGTGT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
50 34 0.63
51 20 0.37
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.20
Consensus pattern (50 bp):
GCTCATACGAGCTGAGAAACGATAAGCTCTCACGAGCTGAAAAACAGTAA
Found at i:114636 original size:17 final size:18
Alignment explanation
Indices: 114611--114648 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
114601 CTTCTTCAAC
* *
114611 TTCTTTTTCA-ATTTCTT
1 TTCTGTTTCACATTCCTT
114628 TTCTGTTTCACATTCCTT
1 TTCTGTTTCACATTCCTT
114646 TTC
1 TTC
114649 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.11, C:0.24, G:0.03, T:0.63
Consensus pattern (18 bp):
TTCTGTTTCACATTCCTT
Found at i:118292 original size:118 final size:119
Alignment explanation
Indices: 118081--118323 Score: 461
Period size: 118 Copynumber: 2.0 Consensus size: 119
118071 AAACGGAAAG
118081 AAGTTAGTTTCAGTATGTAAAAGATTTTTTTTTTTTTATAGTTCTCTTTCCCCCTTTAACTTCAC
1 AAGTTAGTTTCAGTATGTAAAAGA--TTTTTTTTTTTATAGTTCTCTTTCCCCCTTTAACTTCAC
118146 CTGACTTCCAATGGAACCAGTTGAACCGACAATGGAGATAGGCTTGGGGCCATCCC
64 CTGACTTCCAATGGAACCAGTTGAACCGACAATGGAGATAGGCTTGGGGCCATCCC
118202 AAGTTAGTTTCAGTATGTAAAAGA-TTTTTTTTTTATAGTTCTCTTTCCCCCTTTAACTTCACCT
1 AAGTTAGTTTCAGTATGTAAAAGATTTTTTTTTTTATAGTTCTCTTTCCCCCTTTAACTTCACCT
118266 GACTTCCAATGGAACCAGTTGAACCGACAATGGAGATAGGCTTGGGGCCATCCC
66 GACTTCCAATGGAACCAGTTGAACCGACAATGGAGATAGGCTTGGGGCCATCCC
118320 AAGT
1 AAGT
118324 CTTGCGTCCA
Statistics
Matches: 122, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
118 98 0.80
121 24 0.20
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (119 bp):
AAGTTAGTTTCAGTATGTAAAAGATTTTTTTTTTTATAGTTCTCTTTCCCCCTTTAACTTCACCT
GACTTCCAATGGAACCAGTTGAACCGACAATGGAGATAGGCTTGGGGCCATCCC
Found at i:123727 original size:25 final size:24
Alignment explanation
Indices: 123699--123808 Score: 122
Period size: 22 Copynumber: 4.6 Consensus size: 24
123689 TTATTATGCA
*
123699 CTAATGAACAGAGAGCACTAAAGTG
1 CTAAT-AACAGAGAGCACTAATGTG
123724 CT-A-AACAGAGAGCAC-AGATGTG
1 CTAATAACAGAGAGCACTA-ATGTG
*
123746 CT-A-AACAGAGAGCACTAACGTG
1 CTAATAACAGAGAGCACTAATGTG
*
123768 CTAGTAATCAGAGAGCACTAATGTG
1 CTAATAA-CAGAGAGCACTAATGTG
123793 CTAATAATCAGAGAGC
1 CTAATAA-CAGAGAGC
123809 GCGCTAAAGT
Statistics
Matches: 75, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
21 1 0.01
22 37 0.49
23 1 0.01
24 3 0.04
25 33 0.44
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.17
Consensus pattern (24 bp):
CTAATAACAGAGAGCACTAATGTG
Found at i:123730 original size:22 final size:22
Alignment explanation
Indices: 123705--123796 Score: 123
Period size: 22 Copynumber: 4.0 Consensus size: 22
123695 TGCACTAATG
*
123705 AACAGAGAGCACTAAAGTGCTA
1 AACAGAGAGCACTAATGTGCTA
123727 AACAGAGAGCAC-AGATGTGCTA
1 AACAGAGAGCACTA-ATGTGCTA
*
123749 AACAGAGAGCACTAACGTGCTA
1 AACAGAGAGCACTAATGTGCTA
123771 GTAATCAGAGAGCACTAATGTGCTA
1 --AA-CAGAGAGCACTAATGTGCTA
123796 A
1 A
123797 TAATCAGAGA
Statistics
Matches: 62, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
21 1 0.02
22 38 0.61
23 2 0.03
24 2 0.03
25 19 0.31
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.16
Consensus pattern (22 bp):
AACAGAGAGCACTAATGTGCTA
Found at i:124679 original size:4 final size:4
Alignment explanation
Indices: 124670--124711 Score: 57
Period size: 4 Copynumber: 10.2 Consensus size: 4
124660 ATTTTCCCTT
* *
124670 TTTC TTTC TTTC TTTC TTTTC TTTC TTTC CTTC TTTC CTTC T
1 TTTC TTTC TTTC TTTC -TTTC TTTC TTTC TTTC TTTC TTTC T
124712 CTGTTTCGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
4 29 0.88
5 4 0.12
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTC
Found at i:124691 original size:17 final size:17
Alignment explanation
Indices: 124669--124705 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
124659 AATTTTCCCT
*
124669 TTTTCTTTCTTTCTTTC
1 TTTTCTTTCTTTCCTTC
124686 TTTTCTTTCTTTCCTTC
1 TTTTCTTTCTTTCCTTC
124703 TTT
1 TTT
124706 CCTTCTCTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTCTTTCTTTCCTTC
Found at i:124816 original size:11 final size:11
Alignment explanation
Indices: 124777--124809 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
124767 TTGTTTTGAT
124777 TAAT-TAATAA
1 TAATATAATAA
124787 -AATATAATAA
1 TAATATAATAA
124797 TAATATAATAA
1 TAATATAATAA
124808 TA
1 TA
124810 TTTTAATCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 3 0.14
10 6 0.29
11 12 0.57
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
TAATATAATAA
Found at i:131365 original size:6 final size:6
Alignment explanation
Indices: 131354--131379 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
131344 GTGGAGATAT
131354 GGAGGC GGAGGC GGAGGC GGAGGC GG
1 GGAGGC GGAGGC GGAGGC GGAGGC GG
131380 TGGTTATTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.69, T:0.00
Consensus pattern (6 bp):
GGAGGC
Found at i:141588 original size:5 final size:5
Alignment explanation
Indices: 141580--141604 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
141570 AAATCATTTT
141580 CTTTC CTTTC CTTTC CTTTC CTTTC
1 CTTTC CTTTC CTTTC CTTTC CTTTC
141605 TATATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (5 bp):
CTTTC
Found at i:146989 original size:31 final size:31
Alignment explanation
Indices: 146929--146989 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
146919 ATTATACACG
* *
146929 TGAAACTCTAATTGTGGTTTAAATGTATACT
1 TGAAACTCTAATTGTGATTTAAATATATACT
*
146960 TGAAACTCTAATTTTGATTT-AATCATATAC
1 TGAAACTCTAATTGTGATTTAAAT-ATATAC
146990 ATTTAAAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 3 0.12
31 23 0.88
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (31 bp):
TGAAACTCTAATTGTGATTTAAATATATACT
Found at i:149301 original size:51 final size:51
Alignment explanation
Indices: 149225--149329 Score: 210
Period size: 51 Copynumber: 2.1 Consensus size: 51
149215 CATGGTCTTG
149225 ATTATTGAATTTTACCATTTTAATGGTGACCTTAATTTTAGCTAAAACCAC
1 ATTATTGAATTTTACCATTTTAATGGTGACCTTAATTTTAGCTAAAACCAC
149276 ATTATTGAATTTTACCATTTTAATGGTGACCTTAATTTTAGCTAAAACCAC
1 ATTATTGAATTTTACCATTTTAATGGTGACCTTAATTTTAGCTAAAACCAC
149327 ATT
1 ATT
149330 TAAACCCTAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (51 bp):
ATTATTGAATTTTACCATTTTAATGGTGACCTTAATTTTAGCTAAAACCAC
Found at i:154989 original size:4 final size:4
Alignment explanation
Indices: 154980--155008 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
154970 AATGTATGAC
154980 TACA TACA TACA TACA TACA TACA TACA T
1 TACA TACA TACA TACA TACA TACA TACA T
155009 CAAGGAACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (4 bp):
TACA
Found at i:171401 original size:1 final size:1
Alignment explanation
Indices: 171395--171424 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
171385 TTTGCTTCCT
171395 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
171425 GGGACTTTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:172803 original size:87 final size:88
Alignment explanation
Indices: 172656--172904 Score: 319
Period size: 87 Copynumber: 2.9 Consensus size: 88
172646 GACAGATCAA
* * *
172656 TGAAGACAAAGGATCTTGCCTTTCTGCATTGACAGCGAAGCAGATCGAAACACAAA-CCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAACACAAAGCCTTGCCT
** * *
172720 CTTTCGGTTG-TGATAGAGCTGGT
66 CCATCGGTTGCAG-TAGAGCTAGT
* *
172743 TGAAGACAAAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAA-ACAAAGCCTTGCAT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAACACAAAGCCTTGCCT
* *
172807 CCATCGATTGCAGTGGAGCTAGT
66 CCATCGGTTGCAGTAGAGCTAGT
* ** *
172830 TAAAGA-AGTAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATC-AAAGACAAAGCCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAACACAAAGCCTTGCCT
172893 CCATCGGTTGCA
66 CCATCGGTTGCA
172905 TTGGAGCAGA
Statistics
Matches: 142, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
85 3 0.02
86 65 0.46
87 73 0.51
88 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (88 bp):
TGAAGACAAAAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAACACAAAGCCTTGCCT
CCATCGGTTGCAGTAGAGCTAGT
Found at i:172864 original size:86 final size:88
Alignment explanation
Indices: 172658--172911 Score: 320
Period size: 86 Copynumber: 2.9 Consensus size: 88
172648 CAGATCAATG
* * * *
172658 AAGACAAAGGATCTTGCCTTTCTGCATTGACAGCGAAGCAGATCGAAACACAAA-CCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAACACAAAGCCTTGCCTCC
* * * * *
172722 TTCGGTTG-TGATAGAGCTGGTTG
66 ATCGGTTGCAG-TGGAGCTAGTTA
* *
172745 AAGACAAAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAA-ACAAAGCCTTGCATCC
1 AAGACAAAAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAACACAAAGCCTTGCCTCC
*
172809 ATCGATTGCAGTGGAGCTAGTTA
66 ATCGGTTGCAGTGGAGCTAGTTA
** *
172832 AAGA-AGTAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATC-AAAGACAAAGCCTTGCCTCC
1 AAGACAAAAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAACACAAAGCCTTGCCTCC
*
172895 ATCGGTTGCATTGGAGC
66 ATCGGTTGCAGTGGAGC
172912 AGATTGAAGC
Statistics
Matches: 146, Mismatches: 18, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
85 3 0.02
86 71 0.49
87 71 0.49
88 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (88 bp):
AAGACAAAAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAACACAAAGCCTTGCCTCC
ATCGGTTGCAGTGGAGCTAGTTA
Found at i:172995 original size:46 final size:46
Alignment explanation
Indices: 172928--173168 Score: 191
Period size: 46 Copynumber: 5.5 Consensus size: 46
172918 AAGCCAGAGG
* * *
172928 TCTTATCTCCTTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGCAGACCAAAGAATTTCAGA
* * *
172974 TCTTATCTCCCTGAGGTTACAGCGGAGCAGATCAAAG-ATAT-A-A
1 TCTTATCTCCCTGAGGTTACAGTGGAGCAGACCAAAGAATTTCAGA
* * * ** **
173017 TCCTATCTCCCTGAAGTTACAGTGGAGCGGA-TTAA-AA-TAAAGGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGCAGACCAAAGAATTTCA-GA
* * * * * * *
173061 TCTTATCTCTCTGAAGTTACAGTAGAGTAGATC---GCA--TCAGG
1 TCTTATCTCCCTGAGGTTACAGTGGAGCAGACCAAAGAATTTCAGA
* *
173102 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGCAGACCAAAGAATTTCAGA
173148 TCTTAT-TCCCTGAGGTTACAG
1 TCTTATCTCCCTGAGGTTACAG
173169 CGGGAGCAAA
Statistics
Matches: 150, Mismatches: 34, Indels: 23
0.72 0.16 0.11
Matches are distributed among these distances:
41 27 0.18
42 5 0.03
43 29 0.19
44 30 0.20
45 17 0.11
46 42 0.28
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (46 bp):
TCTTATCTCCCTGAGGTTACAGTGGAGCAGACCAAAGAATTTCAGA
Found at i:173036 original size:43 final size:43
Alignment explanation
Indices: 172971--173082 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 43
172961 AAAGAATTTC
* * *
172971 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCAAAGATAT
1 AGATCCTATCTCCCTGAAGTTACAGCGGAGCAGATCAAA-ATAA
* * *
173015 A-ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAA
1 AGATCCTATCTCCCTGAAGTTACAGCGGAGCAGATCAAAATAA
* *
173057 AGGATCTTATCTCTCTGAAGTTACAG
1 A-GATCCTATCTCCCTGAAGTTACAG
173083 TAGAGTAGAT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 4 0.07
43 32 0.55
44 22 0.38
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (43 bp):
AGATCCTATCTCCCTGAAGTTACAGCGGAGCAGATCAAAATAA
Found at i:173150 original size:87 final size:86
Alignment explanation
Indices: 172925--173169 Score: 250
Period size: 87 Copynumber: 2.8 Consensus size: 86
172915 TTGAAGCCAG
*
172925 AGGTCTTATCTCCTTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGG
1 AGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGG
*
172990 TTACAGCGGAGCAGATCAAAGAT
66 TTACAGCAGAGCAGATC--AGAT
** * * * ** ** *
173013 ATAATCCTATCTCCCTGA-AGTTACAGTGGAGCGGA-TTAA-AA-TAAAGGATCTTATCTCTCTG
1 A-GGTCTTATCTCCCTGAGA-TTACAGTGGAACAGACCAAAGAATTTCA-GATCTTATCTCCCTG
* * *
173074 AAGTTACAGTAGAGTAGATC-GCAT
63 AGGTTACAGCAGAGCAGATCAG-AT
173098 CAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTAT-TCCCTGAG
1 -AGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAG
173162 GTTACAGC
65 GTTACAGC
173170 GGGAGCAAAG
Statistics
Matches: 121, Mismatches: 27, Indels: 20
0.72 0.16 0.12
Matches are distributed among these distances:
84 1 0.01
85 28 0.23
86 19 0.16
87 42 0.35
88 6 0.05
89 25 0.21
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (86 bp):
AGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGG
TTACAGCAGAGCAGATCAGAT
Found at i:173359 original size:43 final size:45
Alignment explanation
Indices: 173254--173367 Score: 128
Period size: 46 Copynumber: 2.6 Consensus size: 45
173244 CATCAGGTCT
* *
173254 TATCTCCCTG-AGATTACAGCGGAACAGACCGAAGAATTGCAGATCT
1 TATCTCCCTGAAG-TTACAGCGGAGCAGACCGAAGAATT-CAGATCC
* *
173300 TATCTCCCTGAGGTTACAGCGGAGCAGATCGAAG-ATAT-A-ATCC
1 TATCTCCCTGAAGTTACAGCGGAGCAGACCGAAGAAT-TCAGATCC
*
173343 TATCTCCCTGAAGTTACAGTGGAGC
1 TATCTCCCTGAAGTTACAGCGGAGC
173368 GGATTAAAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
43 26 0.43
44 1 0.02
45 2 0.03
46 30 0.50
47 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.24
Consensus pattern (45 bp):
TATCTCCCTGAAGTTACAGCGGAGCAGACCGAAGAATTCAGATCC
Found at i:173985 original size:23 final size:22
Alignment explanation
Indices: 173953--174002 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
173943 AATGAAAGGA
* *
173953 AAAAGGCATGTAATATTGGCTAT
1 AAAAGCCATG-AATATTGACTAT
* *
173976 AAAAGCCATGATTATTGACTGT
1 AAAAGCCATGAATATTGACTAT
173998 AAAAG
1 AAAAG
174003 GGGTTCGGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.28
Consensus pattern (22 bp):
AAAAGCCATGAATATTGACTAT
Found at i:174874 original size:14 final size:15
Alignment explanation
Indices: 174842--174896 Score: 62
Period size: 15 Copynumber: 3.8 Consensus size: 15
174832 CTTTTGCTCA
174842 TTTAT-TTAT-TTAT
1 TTTATATTATATTAT
174855 TATTATATTATATT-T
1 T-TTATATTATATTAT
174870 TTTATATTATATTAT
1 TTTATATTATATTAT
* *
174885 TATATTTTATAT
1 TTTATATTATAT
174897 AATATATATA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
13 1 0.03
14 16 0.44
15 17 0.47
16 2 0.06
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTATATTATATTAT
Found at i:174885 original size:22 final size:23
Alignment explanation
Indices: 174844--174907 Score: 80
Period size: 22 Copynumber: 2.9 Consensus size: 23
174834 TTTGCTCATT
*
174844 TATTTATT-TATTAT-TATATTA
1 TATTTTTTATATTATATATATTA
174865 TATTTTTTATATTATAT-TATTA
1 TATTTTTTATATTATATATATTA
* *
174887 TATTTTATATAATATATATAT
1 TATTTTTTATATTATATATAT
174908 ACTATAATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 7 0.19
22 26 0.70
23 4 0.11
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
TATTTTTTATATTATATATATTA
Found at i:174903 original size:2 final size:2
Alignment explanation
Indices: 174872--175006 Score: 82
Period size: 2 Copynumber: 73.5 Consensus size: 2
174862 TTATATTTTT
*
174872 TA TA T- TA TA T- TA T- TA TA T- TT TA TA TA -A TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
174909 CTA TA -A TA TA TA TG TC TA -A TC TA TA TA TT TA TA -A TC TA TA
1 -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
174949 TA TT TA TA -A TA CTT TA TA TA TA TA TA -A TA -A TA T- TA TA T-
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
174987 TA TA TA TA TA T- TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA T
175007 TCAATATTTT
Statistics
Matches: 103, Mismatches: 14, Indels: 32
0.69 0.09 0.21
Matches are distributed among these distances:
1 14 0.14
2 86 0.83
3 3 0.03
ACGTcount: A:0.43, C:0.04, G:0.01, T:0.53
Consensus pattern (2 bp):
TA
Found at i:174908 original size:11 final size:11
Alignment explanation
Indices: 174892--175006 Score: 64
Period size: 11 Copynumber: 10.6 Consensus size: 11
174882 TATTATATTT
174892 TATATA-ATATA
1 TATATATATA-A
174903 TATATACTATAA
1 TATATA-TATAA
*
174915 TATATATGTCTAA
1 TATATA--TATAA
* *
174928 TCTATATAT-T
1 TATATATATAA
*
174938 TATA-ATCT-A
1 TATATATATAA
*
174947 TATATTTATAA
1 TATATATATAA
*
174958 TACTTTATAT-A
1 TA-TATATATAA
174969 TATATA-ATAA
1 TATATATATAA
*
174979 TAT-TATATTA
1 TATATATATAA
*
174989 TATATATATTA
1 TATATATATAA
175000 TATATAT
1 TATATAT
175007 TCAATATTTT
Statistics
Matches: 81, Mismatches: 14, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
9 11 0.14
10 18 0.22
11 28 0.35
12 12 0.15
13 12 0.15
ACGTcount: A:0.44, C:0.04, G:0.01, T:0.50
Consensus pattern (11 bp):
TATATATATAA
Found at i:174935 original size:15 final size:15
Alignment explanation
Indices: 174894--174972 Score: 63
Period size: 15 Copynumber: 5.3 Consensus size: 15
174884 TTATATTTTA
* *
174894 TATAATATATATATAC
1 TATAATCTATATAT-G
174910 TATAA--TATATATG
1 TATAATCTATATATG
* *
174923 TCTAATCTATATATT
1 TATAATCTATATATG
*
174938 TATAATCTATATATT
1 TATAATCTATATATG
* *
174953 TATAATACTTTATATA
1 TATAAT-CTATATATG
174969 TATA
1 TATA
174973 TAATAATATT
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
13 4 0.07
14 7 0.13
15 27 0.50
16 16 0.30
ACGTcount: A:0.43, C:0.06, G:0.01, T:0.49
Consensus pattern (15 bp):
TATAATCTATATATG
Found at i:174967 original size:33 final size:37
Alignment explanation
Indices: 174873--175007 Score: 106
Period size: 36 Copynumber: 3.8 Consensus size: 37
174863 TATATTTTTT
* *
174873 ATATTATATTAT-TATATTTTATATA-ATATATATATA
1 ATATTATATTATATATATATTATATATATTTATA-ATA
* * * * * *
174909 CTATAATA-TATATGTCTAATCTATATATTTATAAT-
1 ATATTATATTATATATATATTATATATATTTATAATA
* *
174944 CTA-TATATT-TATA-ATACTT-TATATATATATAATA
1 ATATTATATTATATATATA-TTATATATATTTATAATA
174978 ATATTATATTATATATATATTATATATATT
1 ATATTATATTATATATATATTATATATATT
175008 CAATATTTTT
Statistics
Matches: 75, Mismatches: 15, Indels: 17
0.70 0.14 0.16
Matches are distributed among these distances:
33 15 0.20
34 9 0.12
35 13 0.17
36 22 0.29
37 16 0.21
ACGTcount: A:0.43, C:0.04, G:0.01, T:0.53
Consensus pattern (37 bp):
ATATTATATTATATATATATTATATATATTTATAATA
Found at i:174969 original size:35 final size:34
Alignment explanation
Indices: 174930--175021 Score: 89
Period size: 35 Copynumber: 2.6 Consensus size: 34
174920 ATGTCTAATC
* *
174930 TATATATTTATAATCTATATATT-TATA-ATACTTTA
1 TATATATTAATAATAT-TATATTATATATATA--TTA
174965 TATATATATAATAATATTATATTATATATATATTA
1 TATATAT-TAATAATATTATATTATATATATATTA
* *
175000 TATATATTCAATATTTTTATAT
1 TATATATT-AATAATATTATAT
175022 CTACCCTGCT
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
34 1 0.02
35 34 0.69
36 11 0.22
37 3 0.06
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.54
Consensus pattern (34 bp):
TATATATTAATAATATTATATTATATATATATTA
Found at i:175013 original size:9 final size:9
Alignment explanation
Indices: 174852--175007 Score: 89
Period size: 9 Copynumber: 17.4 Consensus size: 9
174842 TTTATTTATT
174852 TATTAT-TA
1 TATTATATA
*
174860 TATTATATT
1 TATTATATA
*
174869 TTTTATATTA
1 TATTATA-TA
174879 TATTAT-TA
1 TATTATATA
*
174887 TATTTTATA
1 TATTATATA
*
174896 TAATATATA
1 TATTATATA
174905 TA-TACTATAA
1 TATTA-TAT-A
* *
174915 TATATATGTC
1 TAT-TATATA
* *
174925 TAATCTATA
1 TATTATATA
174934 TATT-TATA
1 TATTATATA
174942 -ATCTATATA
1 TAT-TATATA
174951 T-TTATA-A
1 TATTATATA
174958 TACTT-TATA
1 TA-TTATATA
174967 TATATATAATAA
1 TAT-TAT-AT-A
174979 TATTATAT-
1 TATTATATA
174987 TA-TATATA
1 TATTATATA
174995 TATTATATA
1 TATTATATA
175004 TATT
1 TATT
175008 CAATATTTTT
Statistics
Matches: 115, Mismatches: 14, Indels: 37
0.69 0.08 0.22
Matches are distributed among these distances:
7 9 0.08
8 31 0.27
9 48 0.42
10 14 0.12
11 7 0.06
12 6 0.05
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (9 bp):
TATTATATA
Found at i:175141 original size:22 final size:23
Alignment explanation
Indices: 175115--175169 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
175105 TACACGTGCA
*
175115 TATGAATATTTTTATTT-TTATT
1 TATGAATATTTCTATTTCTTATT
**
175137 TATGAGCATTTCTATTTCCTTATT
1 TATGAATATTTCTATTT-CTTATT
*
175161 TATGTATAT
1 TATGAATAT
175170 ACATGTATTT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
22 14 0.56
24 11 0.44
ACGTcount: A:0.25, C:0.07, G:0.07, T:0.60
Consensus pattern (23 bp):
TATGAATATTTCTATTTCTTATT
Found at i:180562 original size:13 final size:13
Alignment explanation
Indices: 180546--180598 Score: 61
Period size: 13 Copynumber: 4.1 Consensus size: 13
180536 TTTAAACCAA
180546 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* * **
180559 ACTTCTCCACGGC
1 ACTTTTCAAAAGC
*
180572 ACTTTTCAAAAGA
1 ACTTTTCAAAAGC
180585 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
180598 A
1 A
180599 TTGTCAAACT
Statistics
Matches: 30, Mismatches: 10, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.36, C:0.26, G:0.09, T:0.28
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:200769 original size:2 final size:2
Alignment explanation
Indices: 200762--200803 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
200752 AAGAAAGCAT
200762 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
200804 GCATATGCTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:220913 original size:11 final size:11
Alignment explanation
Indices: 220893--220929 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
220883 CGCCCAACCC
220893 ATATTAAATAT
1 ATATTAAATAT
*
220904 ATATTTAATAT
1 ATATTAAATAT
*
220915 ATATAAAATAT
1 ATATTAAATAT
220926 ATAT
1 ATAT
220930 ATTTGATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
ATATTAAATAT
Found at i:220932 original size:24 final size:25
Alignment explanation
Indices: 220900--220986 Score: 117
Period size: 24 Copynumber: 3.6 Consensus size: 25
220890 CCCATATTAA
* *
220900 ATATATATTT-AATATATATAAAAT
1 ATATATATTTGAATAAAAATAAAAT
*
220924 ATATATATTTGATTAAAAATAAAA-
1 ATATATATTTGAATAAAAATAAAAT
*
220948 ATATATATTTGATTAAAAATAAAAT
1 ATATATATTTGAATAAAAATAAAAT
220973 ATATATATTT-AATA
1 ATATATATTTGAATA
220987 TATAATTCGG
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
24 37 0.65
25 20 0.35
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (25 bp):
ATATATATTTGAATAAAAATAAAAT
Found at i:230966 original size:29 final size:30
Alignment explanation
Indices: 230924--230985 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
230914 TAGGGACCTT
*
230924 ATCAAATTAGTCCCTCTATTATTAAAT-AG
1 ATCAAATTAGTCCCTCTACTATTAAATGAG
* * *
230953 ATCAATTTGGTCCCTGTACTATTAAATGAG
1 ATCAAATTAGTCCCTCTACTATTAAATGAG
230983 ATC
1 ATC
230986 TTTTGGTTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 23 0.82
30 5 0.18
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (30 bp):
ATCAAATTAGTCCCTCTACTATTAAATGAG
Found at i:235649 original size:9 final size:9
Alignment explanation
Indices: 235635--235659 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
235625 CCAAGCACCA
235635 GGCGGTGGT
1 GGCGGTGGT
235644 GGCGGTGGT
1 GGCGGTGGT
235653 GGCGGTG
1 GGCGGTG
235660 CAACCCATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.12, G:0.68, T:0.20
Consensus pattern (9 bp):
GGCGGTGGT
Found at i:245864 original size:23 final size:23
Alignment explanation
Indices: 245832--245884 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
245822 AAATTTAATC
*
245832 TTTATATTTTTTA-ATTTTAAAA
1 TTTAAATTTTTTATATTTTAAAA
*
245854 TTTTAATTTTTTATATTTTAAAA
1 TTTAAATTTTTTATATTTTAAAA
245877 TTTAAATT
1 TTTAAATT
245885 AAATTTATGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 11 0.41
23 16 0.59
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTAAATTTTTTATATTTTAAAA
Found at i:250997 original size:18 final size:18
Alignment explanation
Indices: 250965--250999 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
250955 ATTTTTGACC
*
250965 TTTAAATTTTATTATTTT
1 TTTAAATTCTATTATTTT
*
250983 TTTAAATTCTCTTATTT
1 TTTAAATTCTATTATTT
251000 ATTAATTTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTAAATTCTATTATTTT
Found at i:261677 original size:14 final size:14
Alignment explanation
Indices: 261658--261684 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
261648 TATAGATTAA
261658 AAATTTATAAATTC
1 AAATTTATAAATTC
261672 AAATTTATAAATT
1 AAATTTATAAATT
261685 TTTTATTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (14 bp):
AAATTTATAAATTC
Found at i:267642 original size:67 final size:67
Alignment explanation
Indices: 267529--267661 Score: 257
Period size: 67 Copynumber: 2.0 Consensus size: 67
267519 ACCAAACCGA
267529 TTTGGGGTTTTACTTTACATTGATGAGAAAATACAGTCCATCACCAGTGAATTTTAGCTGTTTTT
1 TTTGGGGTTTTACTTTACATTGATGAGAAAATACAGTCCATCACCAGTGAATTTTAGCTGTTTTT
267594 CT
66 CT
*
267596 TTTGGGGTTTTACTTTACATTGATGAGAAAATACAGTCCATTACCAGTGAATTTTAGCTGTTTTT
1 TTTGGGGTTTTACTTTACATTGATGAGAAAATACAGTCCATCACCAGTGAATTTTAGCTGTTTTT
267661 C
66 C
267662 CATTTCTTTG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (67 bp):
TTTGGGGTTTTACTTTACATTGATGAGAAAATACAGTCCATCACCAGTGAATTTTAGCTGTTTTT
CT
Found at i:306443 original size:4 final size:4
Alignment explanation
Indices: 306434--306463 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
306424 TTCTTCTTCG
306434 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TT
306464 TTTTTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTCT
Found at i:313054 original size:5 final size:5
Alignment explanation
Indices: 313044--313090 Score: 60
Period size: 5 Copynumber: 9.4 Consensus size: 5
313034 TGAGATGGGT
* *
313044 GTATA GTATA GTATA GTATA GTATA GTACA GCT-TA GTATA GTGTA GT
1 GTATA GTATA GTATA GTATA GTATA GTATA G-TATA GTATA GTATA GT
313091 GTGAACTTGA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
4 1 0.03
5 35 0.95
6 1 0.03
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.38
Consensus pattern (5 bp):
GTATA
Found at i:314330 original size:21 final size:20
Alignment explanation
Indices: 314304--314342 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
314294 TTTTAGCAAA
*
314304 AATATTAATATTTTAATATAT
1 AATATTAAT-TTTAAATATAT
314325 AATATTAATTTTAAATAT
1 AATATTAATTTTAAATAT
314343 TTCTAAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
AATATTAATTTTAAATATAT
Found at i:314651 original size:16 final size:16
Alignment explanation
Indices: 314630--314663 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
314620 TAAAAGGGAT
314630 AATATTTGAGATATCA
1 AATATTTGAGATATCA
*
314646 AATATTTGAGGTATCA
1 AATATTTGAGATATCA
314662 AA
1 AA
314664 AAGAAACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (16 bp):
AATATTTGAGATATCA
Found at i:316191 original size:16 final size:16
Alignment explanation
Indices: 316144--316191 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
316134 TAGAGTTTTG
*
316144 AATTATTTTGAAATTA
1 AATTATTTTGAATTTA
* **
316160 AATCATTTTTTCATTTA
1 AATTA-TTTTGAATTTA
316177 AATTATTTTGAATTT
1 AATTATTTTGAATTT
316192 GAACACCTTC
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
16 12 0.50
17 12 0.50
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.56
Consensus pattern (16 bp):
AATTATTTTGAATTTA
Found at i:324335 original size:30 final size:30
Alignment explanation
Indices: 324301--324388 Score: 140
Period size: 30 Copynumber: 2.9 Consensus size: 30
324291 AAATTGACCA
* *
324301 TTCTCCATCAAACTCTCTGCACAAATAAAT
1 TTCTCCATCAAACTCTCTGCACAAACAAAC
*
324331 TTCTCCATCTAACTCTCTGCACAAACAAAC
1 TTCTCCATCAAACTCTCTGCACAAACAAAC
*
324361 TTCTCCATCAAACTCTCTGCCCAAACAA
1 TTCTCCATCAAACTCTCTGCACAAACAA
324389 CACATGAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.34, C:0.35, G:0.03, T:0.27
Consensus pattern (30 bp):
TTCTCCATCAAACTCTCTGCACAAACAAAC
Found at i:324596 original size:11 final size:11
Alignment explanation
Indices: 324580--324620 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
324570 CATGCATCTT
324580 TTCCACTCACA
1 TTCCACTCACA
324591 TTCCACTC-CA
1 TTCCACTCACA
324601 TTCTCACTCACA
1 TTC-CACTCACA
*
324613 TCCCACTC
1 TTCCACTC
324621 TGCATTCTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
10 5 0.19
11 18 0.67
12 4 0.15
ACGTcount: A:0.22, C:0.49, G:0.00, T:0.29
Consensus pattern (11 bp):
TTCCACTCACA
Found at i:327250 original size:11 final size:11
Alignment explanation
Indices: 327236--327357 Score: 65
Period size: 10 Copynumber: 11.9 Consensus size: 11
327226 ACTTTTTTAA
327236 TTTTAAAATAT
1 TTTTAAAATAT
327247 TTTTAAAATATAT
1 TTTT-AAA-ATAT
*
327260 TTTTTAAAT-T
1 TTTTAAAATAT
327270 TTTT---A-A-
1 TTTTAAAATAT
327276 TTTTAAAATACTT
1 TTTTAAAATA--T
327289 TTTTAAAAT-T
1 TTTTAAAATAT
*
327299 TTTT----TAA
1 TTTTAAAATAT
327306 TTTTAAAATAT
1 TTTTAAAATAT
327317 TTTTAAAATATT
1 TTTTAAAATA-T
**
327329 TTTTTTAAT-T
1 TTTTAAAATAT
327339 TTTTAAAA-A-
1 TTTTAAAATAT
327348 TTTTAAAATA
1 TTTTAAAATA
327358 AAAATGGGCC
Statistics
Matches: 86, Mismatches: 7, Indels: 37
0.66 0.05 0.28
Matches are distributed among these distances:
6 5 0.06
7 5 0.06
9 9 0.10
10 19 0.22
11 18 0.21
12 13 0.15
13 17 0.20
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:327263 original size:30 final size:30
Alignment explanation
Indices: 327204--327294 Score: 98
Period size: 30 Copynumber: 3.1 Consensus size: 30
327194 TATTTTTTAA
* *
327204 AATTTTAAAATATTTTTTACATACTTTTTT
1 AATTTTAAAATATTTTTAAAATACTTTTTT
*
327234 AATTTTAAAATATTTTTAAAATATATTTTTT
1 AATTTTAAAATATTTTTAAAATA-CTTTTTT
* *
327265 AAATTTT---TTAATTTTAAAATACTTTTTT
1 -AATTTTAAAATATTTTTAAAATACTTTTTT
327293 AA
1 AA
327295 AATTTTTTTA
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
27 2 0.04
28 6 0.11
29 12 0.23
30 21 0.40
31 6 0.11
32 6 0.11
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.58
Consensus pattern (30 bp):
AATTTTAAAATATTTTTAAAATACTTTTTT
Found at i:327272 original size:40 final size:39
Alignment explanation
Indices: 327206--327309 Score: 133
Period size: 40 Copynumber: 2.6 Consensus size: 39
327196 TTTTTTAAAA
327206 TTTTAAAATATTTTTTACATACTTTTTTAATTTTAAAATA-T
1 TTTTAAAATATTTTTTA-A-A-TTTTTTAATTTTAAAATACT
327247 TTTTAAAATATATTTTTTAAATTTTTTAATTTTAAAATACTT
1 TTTT-AAA-ATATTTTTTAAATTTTTTAATTTTAAAATAC-T
327289 TTTTAAAAT-TTTTTT-AATTTT
1 TTTTAAAATATTTTTTAAATTTT
327310 AAAATATTTT
Statistics
Matches: 59, Mismatches: 0, Indels: 11
0.84 0.00 0.16
Matches are distributed among these distances:
38 6 0.10
39 6 0.10
40 20 0.34
41 8 0.14
42 9 0.15
43 10 0.17
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (39 bp):
TTTTAAAATATTTTTTAAATTTTTTAATTTTAAAATACT
Found at i:327282 original size:70 final size:69
Alignment explanation
Indices: 327195--327344 Score: 230
Period size: 70 Copynumber: 2.1 Consensus size: 69
327185 AAATATATTT
*
327195 ATTTTTTAAAATTTTAAAATA-TTTTTTACATACTTTTTTAATTTTAAAATATTTTTAAAATATA
1 ATTTTTT--AATTTTAAAATACTTTTTTA-AAACTTTTTTAATTTTAAAATATTTTTAAAATAT-
327259 TTTTTTAA
62 TTTTTTAA
*
327267 ATTTTTTAATTTTAAAATACTTTTTTAAAATTTTTTTAATTTTAAAATATTTTTAAAATATTTTT
1 ATTTTTTAATTTTAAAATACTTTTTTAAAACTTTTTTAATTTTAAAATATTTTTAAAATATTTTT
*
327332 TTTA
66 TTAA
327336 ATTTTTTAA
1 ATTTTTTAA
327345 AAATTTTAAA
Statistics
Matches: 74, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
69 16 0.22
70 44 0.59
71 7 0.09
72 7 0.09
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (69 bp):
ATTTTTTAATTTTAAAATACTTTTTTAAAACTTTTTTAATTTTAAAATATTTTTAAAATATTTTT
TTAA
Found at i:327302 original size:30 final size:29
Alignment explanation
Indices: 327247--327340 Score: 127
Period size: 29 Copynumber: 3.1 Consensus size: 29
327237 TTTAAAATAT
*
327247 TTTTAAAATATATTTTTTAAA-TTTTTTAA
1 TTTTAAAATAT-TTTTTAAAATTTTTTTAA
327276 TTTTAAAATACTTTTTTAAAATTTTTTTAA
1 TTTTAAAATA-TTTTTTAAAATTTTTTTAA
*
327306 TTTTAAAATATTTTTAAAATATTTTTTTTAA
1 TTTTAAAATATTTTTTAAA-A-TTTTTTTAA
327337 TTTT
1 TTTT
327341 TTAAAAATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
29 26 0.44
30 20 0.34
31 13 0.22
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (29 bp):
TTTTAAAATATTTTTTAAAATTTTTTTAA
Found at i:327333 original size:42 final size:40
Alignment explanation
Indices: 327276--327357 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 40
327266 AATTTTTTAA
*
327276 TTTTAAAATACTTTTTTAAAATTTTTT-TAATTTTAAAATAT
1 TTTTAAAATACTTTTTT--AATTTTTTAAAATTTTAAAATAT
*
327317 TTTTAAAATATTTTTTTTAATTTTTTAAAAATTTTAAAATA
1 TTTTAAAATA-CTTTTTTAATTTTTT-AAAATTTTAAAATA
327358 AAAATGGGCC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
40 8 0.22
41 10 0.28
42 18 0.50
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (40 bp):
TTTTAAAATACTTTTTTAATTTTTTAAAATTTTAAAATAT
Found at i:328272 original size:34 final size:35
Alignment explanation
Indices: 328224--328290 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
328214 CAGTAAAATA
* *
328224 TTTTTTGTAAAATGATTT-CGGGAAAATGTTTTAC
1 TTTTCTGTAAAATGATTTACGGGAAAATATTTTAC
*
328258 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCTGTAAAATGATTTACGGGAAAATATTTT
328291 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.48
Consensus pattern (35 bp):
TTTTCTGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:329923 original size:22 final size:22
Alignment explanation
Indices: 329898--329943 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
329888 ATGCCAATTA
329898 GAGTGAGAATAGAGTGGAATGT
1 GAGTGAGAATAGAGTGGAATGT
*
329920 GAGTGAGAATGGAGTGGAATGT
1 GAGTGAGAATAGAGTGGAATGT
329942 GA
1 GA
329944 ATGGAAAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.43, T:0.22
Consensus pattern (22 bp):
GAGTGAGAATAGAGTGGAATGT
Found at i:329948 original size:11 final size:11
Alignment explanation
Indices: 329909--329949 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
329899 AGTGAGAATA
329909 GAGTGGAATGT
1 GAGTGGAATGT
329920 GAGTGAGAATG-
1 GAGTG-GAATGT
329931 GAGTGGAATGT
1 GAGTGGAATGT
*
329942 GAATGGAA
1 GAGTGGAA
329950 AAGGTGCATG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
10 5 0.19
11 17 0.63
12 5 0.19
ACGTcount: A:0.34, C:0.00, G:0.44, T:0.22
Consensus pattern (11 bp):
GAGTGGAATGT
Found at i:330177 original size:30 final size:30
Alignment explanation
Indices: 330141--330228 Score: 122
Period size: 30 Copynumber: 2.9 Consensus size: 30
330131 TTTTCATGTG
* *
330141 TTGTTTGGGCAGAGAGTTTGATGGAGAAGT
1 TTGTTTGTGCAGAGAGTTTGATGGAGAAAT
* *
330171 TTGTTTGTGCAGAGAATTAGATGGAGAAAT
1 TTGTTTGTGCAGAGAGTTTGATGGAGAAAT
* *
330201 TTATTTGTGCAGAGAGTTTGACGGAGAA
1 TTGTTTGTGCAGAGAGTTTGATGGAGAA
330229 TGGTCAATTT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.28, C:0.05, G:0.34, T:0.33
Consensus pattern (30 bp):
TTGTTTGTGCAGAGAGTTTGATGGAGAAAT
Found at i:332269 original size:71 final size:72
Alignment explanation
Indices: 332178--332317 Score: 219
Period size: 71 Copynumber: 2.0 Consensus size: 72
332168 CCCCAAAAAG
* * *
332178 AATCATTAATTCGCAAGTTGAAGAAAGACAAAGTGAACGGTAATTAATTAATATA-AAAGGGGGT
1 AATCATTAATTCACAAGTTGAAGAAAGACAAAGTAAACGGTAATTAATTAATATAGAAAGGAGGT
332242 TAAGGCA
66 TAAGGCA
* * *
332249 AATCATTAATTCATAGGTTGAAGAAAGACAAAGTAAACGGTATTTAATTAATATAGAAAGGAGGT
1 AATCATTAATTCACAAGTTGAAGAAAGACAAAGTAAACGGTAATTAATTAATATAGAAAGGAGGT
332314 TAAG
66 TAAG
332318 ACGAACATGA
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
71 50 0.81
72 12 0.19
ACGTcount: A:0.46, C:0.07, G:0.21, T:0.26
Consensus pattern (72 bp):
AATCATTAATTCACAAGTTGAAGAAAGACAAAGTAAACGGTAATTAATTAATATAGAAAGGAGGT
TAAGGCA
Found at i:338458 original size:13 final size:13
Alignment explanation
Indices: 338440--338465 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
338430 TGATTGAGCC
338440 ATTAATATTGCCT
1 ATTAATATTGCCT
338453 ATTAATATTGCCT
1 ATTAATATTGCCT
338466 TTGCTATCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (13 bp):
ATTAATATTGCCT
Found at i:344189 original size:5 final size:5
Alignment explanation
Indices: 344179--344212 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
344169 CAAATTAGGT
* *
344179 TTTTC TTTTC TTTTC TTCTC GTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
344213 TTAATTCCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.76
Consensus pattern (5 bp):
TTTTC
Found at i:344263 original size:13 final size:13
Alignment explanation
Indices: 344254--344280 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
344244 TCACTGTCTC
344254 CTTCCACTGTCAA
1 CTTCCACTGTCAA
344267 CTTCCACTGTCAA
1 CTTCCACTGTCAA
344280 C
1 C
344281 AATCAAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.41, G:0.07, T:0.30
Consensus pattern (13 bp):
CTTCCACTGTCAA
Found at i:349491 original size:3 final size:3
Alignment explanation
Indices: 349483--349519 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
349473 TTTTGCACAC
349483 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
349520 AGCAATATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:367661 original size:40 final size:40
Alignment explanation
Indices: 367588--367707 Score: 95
Period size: 40 Copynumber: 3.0 Consensus size: 40
367578 AAATTGTTCA
* *
367588 TCCACGTCAGCAAATCGCGTCCT--CGTAGG-CGCGATTTGTG
1 TCCACGTAAGCAAATCGCG--CTGACGT-GGACGCGATTTCTG
*
367628 TCCACGTAAGCAAATCGCGCTGACGTGGACGCGATGTCCTG
1 TCCACGTAAGCAAATCGCGCTGACGTGGACGCGAT-TTCTG
* * **
367669 -ACATGTACCCTAACATCGCGCTGACGTGGACGCGATTTC
1 TCCACGTAAGC-AA-ATCGCGCTGACGTGGACGCGATTTC
367708 GCGAAAAATG
Statistics
Matches: 66, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
38 2 0.03
39 2 0.03
40 33 0.50
41 7 0.11
42 22 0.33
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.23
Consensus pattern (40 bp):
TCCACGTAAGCAAATCGCGCTGACGTGGACGCGATTTCTG
Found at i:368817 original size:22 final size:23
Alignment explanation
Indices: 368766--368818 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 23
368756 AATTACGTAA
* *
368766 AAAATAGTTTATGCTAAAAATAT
1 AAAATATTTTATGATAAAAATAT
**
368789 -ATGTATTTTAT-ATAAAAATAT
1 AAAATATTTTATGATAAAAATAT
368810 AAAATATTT
1 AAAATATTT
368819 ATTATCATTA
Statistics
Matches: 23, Mismatches: 6, Indels: 3
0.72 0.19 0.09
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.42
Consensus pattern (23 bp):
AAAATATTTTATGATAAAAATAT
Found at i:369991 original size:30 final size:29
Alignment explanation
Indices: 369957--370013 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
369947 GGGTAAAACC
* *
369957 GAATTAATTCGTTTAATCGGTCGGTTAACT
1 GAATTAATTCGGTCAAT-GGTCGGTTAACT
369987 GAATTAATTCGGTCAATGGTCGGTTAA
1 GAATTAATTCGGTCAATGGTCGGTTAA
370014 TAATTTTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 10 0.40
30 15 0.60
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.37
Consensus pattern (29 bp):
GAATTAATTCGGTCAATGGTCGGTTAACT
Found at i:371607 original size:31 final size:31
Alignment explanation
Indices: 371553--371637 Score: 91
Period size: 31 Copynumber: 2.8 Consensus size: 31
371543 ACTCAATGAG
* * ***
371553 TTAAATAAAAA-ATGCAAATAGTTTAGTTTT
1 TTAAATAAAAACATTCGAATAGTTTAGTGAC
* *
371583 TTAAATAAAAACTTTTGAATAGTTTAGTGAC
1 TTAAATAAAAACATTCGAATAGTTTAGTGAC
*
371614 TTAAATGAAAACATTCGAATAGTT
1 TTAAATAAAAACATTCGAATAGTT
371638 CAATGATCAT
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
30 11 0.25
31 33 0.75
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.38
Consensus pattern (31 bp):
TTAAATAAAAACATTCGAATAGTTTAGTGAC
Found at i:392068 original size:13 final size:13
Alignment explanation
Indices: 392031--392070 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
392021 AGTTCTTCAT
392031 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
392044 TGCTATGGAAAAG
1 TGCTTTTGAAAAG
*
392057 TGCTTTTAAAAAG
1 TGCTTTTGAAAAG
392070 T
1 T
392071 TTGGTTTAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.35, C:0.07, G:0.23, T:0.35
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:392757 original size:9 final size:9
Alignment explanation
Indices: 392743--392767 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
392733 TCATTTTGAT
392743 TTTTTAAAA
1 TTTTTAAAA
392752 TTTTTAAAA
1 TTTTTAAAA
392761 TTTTTAA
1 TTTTTAA
392768 TTAATAAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:394193 original size:31 final size:31
Alignment explanation
Indices: 394132--394196 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
394122 TTTAACAGCC
* *
394132 CAATGATTTAAATAAAAACTATCGACTAGTT
1 CAATGACTTAAATAAAAACTATAGACTAGTT
* *
394163 CAATGACTTAAATGAAAACTTTTAGA-TAGTT
1 CAATGACTTAAATAAAAAC-TATAGACTAGTT
394194 CAA
1 CAA
394197 AAATCATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 25 0.86
32 4 0.14
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (31 bp):
CAATGACTTAAATAAAAACTATAGACTAGTT
Found at i:399126 original size:20 final size:20
Alignment explanation
Indices: 399088--399127 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
399078 AAATATTTTG
*
399088 TTAACTAATAATTATAATTT
1 TTAACTAATAATTACAATTT
399108 TTAACTAAATAATT-CAATTT
1 TTAACT-AATAATTACAATTT
399128 AAAGGGTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.47
Consensus pattern (20 bp):
TTAACTAATAATTACAATTT
Found at i:418082 original size:30 final size:30
Alignment explanation
Indices: 418048--418107 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
418038 ATGCACTGCT
*
418048 TGATT-AAGAATTTATTTGAATACAAATTAA
1 TGATTAAAG-ATTTATTGGAATACAAATTAA
*
418078 TGATTAAAGATTTATTGGAATATAAATTAA
1 TGATTAAAGATTTATTGGAATACAAATTAA
418108 AGTTTAGAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 24 0.89
31 3 0.11
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.40
Consensus pattern (30 bp):
TGATTAAAGATTTATTGGAATACAAATTAA
Found at i:423746 original size:27 final size:27
Alignment explanation
Indices: 423690--423776 Score: 65
Period size: 27 Copynumber: 3.2 Consensus size: 27
423680 TTAAAGAATT
*
423690 TTTTTAGATTTATACATTTTTTATATA
1 TTTTTAGATTTATACATTTTTTATAAA
* * *
423717 TTTTTATATTTGTATATATTTTTA-AAA
1 TTTTTAGATTTATACAT-TTTTTATAAA
*
423744 TTTTGT-GATTT-TA-ATTAATTTTATAGA
1 TTTT-TAGATTTATACATT--TTTTATAAA
423771 TTTTTA
1 TTTTTA
423777 AATAATTTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
24 1 0.02
25 2 0.04
26 8 0.17
27 30 0.62
28 7 0.15
ACGTcount: A:0.30, C:0.01, G:0.06, T:0.63
Consensus pattern (27 bp):
TTTTTAGATTTATACATTTTTTATAAA
Found at i:423775 original size:20 final size:19
Alignment explanation
Indices: 423708--423785 Score: 67
Period size: 18 Copynumber: 4.2 Consensus size: 19
423698 TTTATACATT
*
423708 TTTTATATATTTTT-AT-A
1 TTTTATAGATTTTTAATAA
*
423725 TTTGTATATATTTTTAA-AA
1 TTT-TATAGATTTTTAATAA
*
423744 TTTTGT-GA-TTTTAATTAA
1 TTTTATAGATTTTTAA-TAA
423762 TTTTATAGATTTTTAAATAA
1 TTTTATAGATTTTT-AATAA
423782 TTTT
1 TTTT
423786 TAGTTTAAGA
Statistics
Matches: 50, Mismatches: 3, Indels: 13
0.76 0.05 0.20
Matches are distributed among these distances:
16 6 0.12
17 4 0.08
18 20 0.40
19 7 0.14
20 11 0.22
21 2 0.04
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (19 bp):
TTTTATAGATTTTTAATAA
Found at i:423797 original size:25 final size:24
Alignment explanation
Indices: 423763--423810 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
423753 TTTAATTAAT
423763 TTTATAGATTTTTAAATAATTTTTAG
1 TTTATAGATTTTT-AA-AATTTTTAG
423789 TTTA-AGATTTTTAAAATTTTTA
1 TTTATAGATTTTTAAAATTTTTA
423811 AAATTATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 8 0.36
24 2 0.09
25 8 0.36
26 4 0.18
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (24 bp):
TTTATAGATTTTTAAAATTTTTAG
Found at i:424718 original size:12 final size:12
Alignment explanation
Indices: 424680--424720 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
424670 TTACGGATGA
*
424680 ATTTTAATATGT
1 ATTTTAATATAT
*
424692 ATATTAATATAT
1 ATTTTAATATAT
424704 ATTTTAATATAT
1 ATTTTAATATAT
424716 ATTTT
1 ATTTT
424721 TTATTTAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (12 bp):
ATTTTAATATAT
Found at i:428561 original size:3 final size:3
Alignment explanation
Indices: 428553--428624 Score: 76
Period size: 3 Copynumber: 23.7 Consensus size: 3
428543 AAAATAAAAC
* **
428553 TAA TAA TAA TTAA TAA TAG TAA TAA TAA TAA CCA TAA TAA TAA TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
428599 GCTAA TAA TAA T-A TAA TAA T-A TAA TA
1 --TAA TAA TAA TAA TAA TAA TAA TAA TA
428625 TAGCAATAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
2 4 0.07
3 48 0.83
4 3 0.05
5 3 0.05
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:428591 original size:34 final size:33
Alignment explanation
Indices: 428553--428617 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
428543 AAAATAAAAC
*
428553 TAATAATAATTAA-TAATAGTAATAATAATAACCA
1 TAATAATAA-TAACTAATAATAAT-ATAATAACCA
428587 TAATAATAATAAGCTAATAATAATATAATAA
1 TAATAATAATAA-CTAATAATAATATAATAA
428618 TATAATATAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 3 0.11
34 16 0.57
35 9 0.32
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (33 bp):
TAATAATAATAACTAATAATAATATAATAACCA
Found at i:430273 original size:83 final size:82
Alignment explanation
Indices: 430088--430275 Score: 256
Period size: 83 Copynumber: 2.3 Consensus size: 82
430078 TTCCAGTCTA
* *
430088 CTCCACTGTAATCTCA-GAGAATAAGACCTGACACGATCTACTCTGCTGTAACTTCAGAAGATAG
1 CTCCACTGTAATCTCAGGAG-ATAAGACCTGAAACGATCTACTCTACTGTAACTTCAGAAGATAG
430152 ATCCTTCATTTTAATCCG
65 ATCCTTCATTTTAATCCG
* * *
430170 CTTCA-AGTAATCTCAGGGAGATAAGATCTGAAAC-ATCTACTCTACTGTAACTTCAGAGAGATA
1 CTCCACTGTAATCTCA-GGAGATAAGACCTGAAACGATCTACTCTACTGTAACTTCAGA-AGAT-
*
430233 AGATCCTTCGTTTTAATCCG
63 AGATCCTTCATTTTAATCCG
*
430253 CTCCACTGTAATATCAGGAGATA
1 CTCCACTGTAATCTCAGGAGATA
430276 GGATTACTAT
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
81 31 0.34
82 20 0.22
83 33 0.36
84 8 0.09
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (82 bp):
CTCCACTGTAATCTCAGGAGATAAGACCTGAAACGATCTACTCTACTGTAACTTCAGAAGATAGA
TCCTTCATTTTAATCCG
Found at i:430426 original size:131 final size:127
Alignment explanation
Indices: 430176--430457 Score: 519
Period size: 131 Copynumber: 2.2 Consensus size: 127
430166 TCCGCTTCAA
*
430176 GTAATCTCAGGGAGATAAGATCTGAAACATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTT
1 GTAATCTCAGGGAGATAAGATCTGAAACATCTACTCTACTGTAACTTCAAAGAGATAAGATCCTT
430241 CGTTTTAATCCGCTCCACTGTAATATCAGGAGATAGGATTACTATCTTCAATCTGCTCCGCT
66 CGTTTTAATCCGCTCCACTGTAATATCAGGAGATAGGATTACTATCTTCAATCTGCTCCGCT
430303 GTAATCTCAGGGAGATAAGATCTGAAACGATCTAGCTCTACTGTAACTTCAAAGAGATAAGATCC
1 GTAATCTCAGGGAGATAAGATCTGAAAC-ATCTA-CTCTACTGTAACTTCAAAGAGATAAGATCC
430368 TTCGTTTTACATCCGCTCCACTGTAATATCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGC
64 TTCGTTTTA-ATCCGCTCCACTGTAATATCA-GGAGATAGGATTACTATCTTCAATCTGCTCCGC
430433 T
127 T
430434 GTAATCTCAGGGAGATAAGATCTG
1 GTAATCTCAGGGAGATAAGATCTG
430458 CATCTTCAAT
Statistics
Matches: 150, Mismatches: 1, Indels: 4
0.97 0.01 0.03
Matches are distributed among these distances:
127 28 0.19
128 5 0.03
129 38 0.25
130 21 0.14
131 58 0.39
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (127 bp):
GTAATCTCAGGGAGATAAGATCTGAAACATCTACTCTACTGTAACTTCAAAGAGATAAGATCCTT
CGTTTTAATCCGCTCCACTGTAATATCAGGAGATAGGATTACTATCTTCAATCTGCTCCGCT
Done.