Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 100 of 226
Found at i:30923313 original size:90 final size:91
Alignment explanation
Indices: 30923211--30923380 Score: 290
Period size: 90 Copynumber: 1.9 Consensus size: 91
30923201 ATCAATAAAT
* * *
30923211 AAACTAATCAATGTTCAAACTTTGAACATGCTTTATTAAAC-ATTCAATTTCA-TTATACGAAAT
1 AAACTAATCAATGTTCAAACTTTGAACATGCTTTAATAAACTAATCAATAT-ATTTATACGAAAT
30923274 GAAATTTAAATTTAAATTTAAATGTTC
65 GAAATTTAAATTTAAATTTAAATGTTC
30923301 AAACTAATCAATGTTCAAACTTTGAACATGCTTTAATAAACTAATCAATATATTTATACGAAATG
1 AAACTAATCAATGTTCAAACTTTGAACATGCTTTAATAAACTAATCAATATATTTATACGAAATG
30923366 AAATTTAAATTTAAA
66 AAATTTAAATTTAAA
30923381 ATGTTATAAA
Statistics
Matches: 75, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
90 41 0.55
91 34 0.45
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.37
Consensus pattern (91 bp):
AAACTAATCAATGTTCAAACTTTGAACATGCTTTAATAAACTAATCAATATATTTATACGAAATG
AAATTTAAATTTAAATTTAAATGTTC
Found at i:30926565 original size:91 final size:91
Alignment explanation
Indices: 30926453--30926668 Score: 353
Period size: 91 Copynumber: 2.4 Consensus size: 91
30926443 ATGATTTTAG
*
30926453 TAAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAATTATAT-ATCATTATTAAATTAT
1 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATAAT-ATTATTAAATTAT
* *
30926517 TTTTAATATTAATTATTTTAAATTATA
65 ATTTAATAATAATTATTTTAAATTATA
*
30926544 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATAATATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATAATATTATTAAATTATA
30926609 TTTAATAATAATTATTTTAAATTATA
66 TTTAATAATAATTATTTTAAATTATA
* * *
30926635 CAAATTCATATAAGAAAATTTATTAGTAATAATT
1 TAAATTCATATAAGAAAATTTATTATTAAGAATT
30926669 ATTTTAAATT
Statistics
Matches: 116, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
91 114 0.98
92 2 0.02
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATAATATTATTAAATTATA
TTTAATAATAATTATTTTAAATTATA
Found at i:30926667 original size:47 final size:47
Alignment explanation
Indices: 30926453--30926693 Score: 209
Period size: 47 Copynumber: 5.3 Consensus size: 47
30926443 ATGATTTTAG
* * *
30926453 TAAATTCATATAAGAATATTTATTATTAAGAATT-TTATGAAATTATA
1 TAAATTCATATAAGAATATTTATTAATAATAATTATT-TTAAATTATA
* * *
30926500 TATCATT-AT-TAA-ATTATTT-TTAATATTAATTATTTTAAATTATA
1 TA-AATTCATATAAGAATATTTATTAATAATAATTATTTTAAATTATA
* * *
30926544 TAAATTCATATAAGAAAATTTATT-ATCAAGAATT-TTATGAAATTATA
1 TAAATTCATATAAGAATATTTATTAAT-AATAATTATT-TTAAATTATA
* *
30926591 TAATATT-AT-TAA-ATTATAT-TTAATAATAATTATTTTAAATTATA
1 TAA-ATTCATATAAGAATATTTATTAATAATAATTATTTTAAATTATA
* * * *
30926635 CAAATTCATATAAGAAAATTTATTAGTAATAATTATTTTAAATTTTA
1 TAAATTCATATAAGAATATTTATTAATAATAATTATTTTAAATTATA
30926682 TTAAA-TCATATA
1 -TAAATTCATATA
30926694 TTTTAATTAA
Statistics
Matches: 154, Mismatches: 24, Indels: 32
0.73 0.11 0.15
Matches are distributed among these distances:
43 6 0.04
44 43 0.28
45 22 0.14
46 19 0.12
47 55 0.36
48 9 0.06
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (47 bp):
TAAATTCATATAAGAATATTTATTAATAATAATTATTTTAAATTATA
Found at i:30926698 original size:17 final size:17
Alignment explanation
Indices: 30926676--30926709 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
30926666 ATTATTTTAA
30926676 ATTTT-ATTAAATCATAT
1 ATTTTAATTAAAT-ATAT
30926693 ATTTTAATTAAATATAT
1 ATTTTAATTAAATATAT
30926710 TTAATAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTTAATTAAATATAT
Found at i:30926942 original size:18 final size:17
Alignment explanation
Indices: 30926914--30926948 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
30926904 ATTATTAAGA
*
30926914 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
30926931 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
30926949 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:30927062 original size:18 final size:17
Alignment explanation
Indices: 30927034--30927068 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
30927024 ATTATTAAGA
*
30927034 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
30927051 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
30927069 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:30927083 original size:120 final size:120
Alignment explanation
Indices: 30926675--30927090 Score: 741
Period size: 120 Copynumber: 3.5 Consensus size: 120
30926665 AATTATTTTA
*
30926675 AATTTTATTAAATCATATATTTTAATT-AAATATATTTAATAATAATT-TTTTCAAATTATATTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTCAAATTATATTT
*
30926738 TATAGTATCATATATTATGATTTAGTAAATTCATACAAGAATATTGATTATTAAG
66 TATAGTATCATATATTATGATTTAGTAAATTCATATAAGAATATTGATTATTAAG
30926793 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT-TTCAAATTATATTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTCAAATTATATTT
30926857 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
66 TATAGTATCATATATTATGA-TTTAGTAAATTCATATAAGAATATTGATTATTAAG
*
30926913 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTCAAATTATATTT
30926977 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 TATAGTATCATATATTATGATTT-AGTAAATTCATATAAGAATATTGATTATTAAG
* *
30927033 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAAAT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTCAAAT
30927091 ATGATTAAAT
Statistics
Matches: 290, Mismatches: 2, Indels: 9
0.96 0.01 0.03
Matches are distributed among these distances:
118 27 0.09
119 57 0.20
120 200 0.69
121 6 0.02
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTCAAATTATATTT
TATAGTATCATATATTATGATTTAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:30927411 original size:18 final size:19
Alignment explanation
Indices: 30927361--30927413 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 19
30927351 TTCAATTCGG
* *
30927361 TTAATTCGGGTAA-TCTGA
1 TTAATTCGGTTAATTTTGA
*
30927379 TTAATTCGATTAATTTTGA
1 TTAATTCGGTTAATTTTGA
30927398 -TAATTCGGTTAATTTT
1 TTAATTCGGTTAATTTT
30927414 TAACCAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 26 0.87
19 4 0.13
ACGTcount: A:0.28, C:0.08, G:0.15, T:0.49
Consensus pattern (19 bp):
TTAATTCGGTTAATTTTGA
Found at i:30929087 original size:3 final size:3
Alignment explanation
Indices: 30929079--30929105 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
30929069 AAATATATAA
30929079 AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG
30929106 CTACATATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:30929764 original size:17 final size:17
Alignment explanation
Indices: 30929710--30929766 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 17
30929700 TGTGTATTTG
30929710 AAATATTTCACATATAA
1 AAATATTTCACATATAA
* * * **
30929727 ACATAATT-ATAT-TTG
1 AAATATTTCACATATAA
30929742 AAATATTTCACATATAA
1 AAATATTTCACATATAA
30929759 AAATATTT
1 AAATATTT
30929767 GAAATATCAT
Statistics
Matches: 28, Mismatches: 10, Indels: 4
0.67 0.24 0.10
Matches are distributed among these distances:
15 7 0.25
16 6 0.21
17 15 0.54
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (17 bp):
AAATATTTCACATATAA
Found at i:30929764 original size:26 final size:30
Alignment explanation
Indices: 30929704--30929773 Score: 94
Period size: 32 Copynumber: 2.4 Consensus size: 30
30929694 TTTGTATGTG
30929704 TATTTGAAATATTTCACATATAAACATAATTA
1 TATTTGAAATATTTCACATAT-AACATAA-TA
30929736 TATTTGAAATATTTCACATAT-A-A-AA-A
1 TATTTGAAATATTTCACATATAACATAATA
30929762 TATTTGAAATAT
1 TATTTGAAATAT
30929774 CATACTCACA
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
26 13 0.34
28 2 0.05
29 1 0.03
30 1 0.03
32 21 0.55
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.41
Consensus pattern (30 bp):
TATTTGAAATATTTCACATATAACATAATA
Found at i:30930838 original size:14 final size:15
Alignment explanation
Indices: 30930816--30930892 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
30930806 CAATCAAACA
30930816 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
30930830 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
30930845 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
30930865 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
30930879 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
30930893 ACTCTCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:30930857 original size:20 final size:20
Alignment explanation
Indices: 30930832--30930871 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
30930822 AATATTTTCC
*
30930832 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
30930852 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
30930872 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:30930877 original size:34 final size:35
Alignment explanation
Indices: 30930820--30930886 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
30930810 CAAACACCAG
*
30930820 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
30930855 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
30930887 TATTTTACTC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:30934187 original size:12 final size:12
Alignment explanation
Indices: 30934172--30934198 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
30934162 TTAAATTTTC
30934172 TATTAATATACA
1 TATTAATATACA
30934184 TATTAATATACA
1 TATTAATATACA
30934196 TAT
1 TAT
30934199 ATGATTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (12 bp):
TATTAATATACA
Found at i:30934708 original size:14 final size:14
Alignment explanation
Indices: 30934685--30934720 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
30934675 AAATTGAAGA
*
30934685 AGGAGAAGCACGGT
1 AGGAGGAGCACGGT
30934699 AGGAGGAGCACGGT
1 AGGAGGAGCACGGT
30934713 AGGAGGAG
1 AGGAGGAG
30934721 GAAAGATATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.11, G:0.50, T:0.06
Consensus pattern (14 bp):
AGGAGGAGCACGGT
Found at i:30938331 original size:43 final size:43
Alignment explanation
Indices: 30938270--30938351 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
30938260 TCAAATATGT
*
30938270 TAGTTATTCATTTCATGTAAACATCAATAACAAAGATGAGCTC
1 TAGTTATTCATATCATGTAAACATCAATAACAAAGATGAGCTC
*
30938313 TAGTTATTCATATCATGTAAACATCAATAACAAATATGA
1 TAGTTATTCATATCATGTAAACATCAATAACAAAGATGA
30938352 ACTCATCAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.33
Consensus pattern (43 bp):
TAGTTATTCATATCATGTAAACATCAATAACAAAGATGAGCTC
Found at i:30938629 original size:25 final size:24
Alignment explanation
Indices: 30938600--30938651 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
30938590 AGCATATAAA
30938600 GGGAAGCTCACAAACAACACTTAAC
1 GGGAAGCTC-CAAACAACACTTAAC
* * *
30938625 GGGAAGCTCCGAAGAGCACTTAAC
1 GGGAAGCTCCAAACAACACTTAAC
30938649 GGG
1 GGG
30938652 TAGCACCGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 15 0.62
25 9 0.38
ACGTcount: A:0.37, C:0.25, G:0.27, T:0.12
Consensus pattern (24 bp):
GGGAAGCTCCAAACAACACTTAAC
Found at i:30941109 original size:28 final size:28
Alignment explanation
Indices: 30941069--30941125 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
30941059 TCGGTGGCGT
30941069 AAAGCTTTGTGTCAAGTTGGAGACCCAC
1 AAAGCTTTGTGTCAAGTTGGAGACCCAC
30941097 AAAGCTTTGTGTCAAGTTGGAGACCCAC
1 AAAGCTTTGTGTCAAGTTGGAGACCCAC
30941125 A
1 A
30941126 GAATACCAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (28 bp):
AAAGCTTTGTGTCAAGTTGGAGACCCAC
Found at i:30941744 original size:22 final size:23
Alignment explanation
Indices: 30941714--30941764 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
30941704 AATATTATTA
*
30941714 ATTAATTTAATTCGATT-TT-AAT
1 ATTATTTTAATT-GATTATTAAAT
*
30941736 ATTATTTTAATTGGTTATTAAAT
1 ATTATTTTAATTGATTATTAAAT
30941759 ATTATT
1 ATTATT
30941765 ATTTGTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 3 0.12
22 13 0.52
23 9 0.36
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (23 bp):
ATTATTTTAATTGATTATTAAAT
Found at i:30949490 original size:18 final size:16
Alignment explanation
Indices: 30949458--30949499 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 16
30949448 AATCATTATT
30949458 TAATTAATTTAATATC
1 TAATTAATTTAATATC
30949474 TAATTATATTGTAATAT-
1 TAATTA-ATT-TAATATC
30949491 TAACTTAAT
1 TAA-TTAAT
30949500 CAATAATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 6 0.26
17 8 0.35
18 9 0.39
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (16 bp):
TAATTAATTTAATATC
Found at i:30951028 original size:13 final size:15
Alignment explanation
Indices: 30950984--30951032 Score: 50
Period size: 14 Copynumber: 3.3 Consensus size: 15
30950974 CAAATGTTTT
*
30950984 ATAAAATATAT-TAA
1 ATAATATATATATAA
30950998 A-AACTATATATATAA
1 ATAA-TATATATATAA
30951013 ATAATATA-ATATAA
1 ATAATATATATATAA
30951027 TATAAT
1 -ATAAT
30951033 TTACTTGTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
13 2 0.07
14 13 0.43
15 13 0.43
16 2 0.07
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (15 bp):
ATAATATATATATAA
Found at i:30951712 original size:15 final size:16
Alignment explanation
Indices: 30951692--30951735 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 16
30951682 CTAAAAATTT
30951692 TAAAAATAT-TAAAAA
1 TAAAAATATATAAAAA
*
30951707 TAAAAATTTATAAAAA
1 TAAAAATATATAAAAA
*
30951723 TTCAAAATATATA
1 -TAAAAATATATA
30951736 TGTAAAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 8 0.33
16 6 0.25
17 10 0.42
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (16 bp):
TAAAAATATATAAAAA
Found at i:30951716 original size:23 final size:24
Alignment explanation
Indices: 30951683--30951731 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
30951673 ACAATAATTC
30951683 TAAAAATTTTA-AAAATATTAAAAA
1 TAAAAATTTTATAAAA-ATTAAAAA
*
30951707 TAAAAA-TTTATAAAAATTCAAAA
1 TAAAAATTTTATAAAAATTAAAAA
30951730 TA
1 TA
30951732 TATATGTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (24 bp):
TAAAAATTTTATAAAAATTAAAAA
Found at i:30951729 original size:24 final size:24
Alignment explanation
Indices: 30951683--30951729 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
30951673 ACAATAATTC
*
30951683 TAAAAATTTTAAAAATATTAAAAA
1 TAAAAATTTTAAAAATATCAAAAA
30951707 TAAAAATTTATAAAAAT-TCAAAA
1 TAAAAATTT-TAAAAATATCAAAA
30951730 TATATATGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (24 bp):
TAAAAATTTTAAAAATATCAAAAA
Found at i:30954549 original size:43 final size:43
Alignment explanation
Indices: 30954487--30954657 Score: 227
Period size: 43 Copynumber: 4.0 Consensus size: 43
30954477 TAACTTTTGC
* *
30954487 GGCGCTTACAGAAAAAAACGCCGTTAAAGATCATGTTCTTTAGT
1 GGCGC-TAAAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGT
* *
30954531 GGCGCTAAAGAAATAAACGCCGCTAAAGATCATGTTCTTTAGC
1 GGCGCTAAAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGT
* * * *
30954574 AGCGCTTACGAAAAAAACGCCGCTAAAGATCATGTTTTTTAGT
1 GGCGCTAAAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGT
** *
30954617 GGCGCT-TGGGAAAAAACGCCGCTAAAGATCATGTTCTTTAG
1 GGCGCTAAAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAG
30954658 CGGATGATAT
Statistics
Matches: 112, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
42 31 0.28
43 76 0.68
44 5 0.04
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (43 bp):
GGCGCTAAAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGT
Found at i:30954654 original size:85 final size:87
Alignment explanation
Indices: 30954488--30954658 Score: 283
Period size: 86 Copynumber: 2.0 Consensus size: 87
30954478 AACTTTTGCG
*
30954488 GCGCTTACAGAAAAAAACGCCGTTAAAGATCATGTTCTTTAGTGGCGCTAAAGAAATAAACGCCG
1 GCGCTTACAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGTGGCGCTAAAGAAATAAACGCCG
30954553 CTAAAGATCATGTTCTTTAGCA
66 CTAAAGATCATGTTCTTTAGCA
* ***
30954575 GCGCTTAC-GAAAAAAACGCCGCTAAAGATCATGTTTTTTAGTGGCGCTTGGGAAA-AAACGCCG
1 GCGCTTACAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGTGGCGCTAAAGAAATAAACGCCG
30954638 CTAAAGATCATGTTCTTTAGC
66 CTAAAGATCATGTTCTTTAGC
30954659 GGATGATATT
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
85 29 0.37
86 42 0.53
87 8 0.10
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (87 bp):
GCGCTTACAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGTGGCGCTAAAGAAATAAACGCCG
CTAAAGATCATGTTCTTTAGCA
Found at i:30954698 original size:57 final size:56
Alignment explanation
Indices: 30954611--30954717 Score: 153
Period size: 57 Copynumber: 1.9 Consensus size: 56
30954601 GATCATGTTT
* * * *
30954611 TTTAGTGGCGCTTGGGAAAAAACGCCGCT-AAAGATCATGTTCTTTAGCGGATGATA
1 TTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAAG-TAATGTTCTATAGCGGATGATA
30954667 TTTAGCGGCGCTTAGGAAGAAAACGCCGCTAAAAGTAATGTTCTATAGCGG
1 TTTAGCGGCGCTTAGGAA-AAAACGCCGCTAAAAGTAATGTTCTATAGCGG
30954718 CGCTTGGTCA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
56 16 0.36
57 25 0.56
58 4 0.09
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (56 bp):
TTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAAGTAATGTTCTATAGCGGATGATA
Found at i:30954738 original size:42 final size:43
Alignment explanation
Indices: 30954669--30954765 Score: 135
Period size: 42 Copynumber: 2.3 Consensus size: 43
30954659 GGATGATATT
30954669 TAGCGGCGCTTAGGAAGAAAACGCCGCTAAAAGTAATGTTCTA
1 TAGCGGCGCTTAGGAAGAAAACGCCGCTAAAAGTAATGTTCTA
* * * *
30954712 TAGCGGCGCTT-GGTCA-AAAACGCCGCTAACAGTAGTGTTCTT
1 TAGCGGCGCTTAGG-AAGAAAACGCCGCTAAAAGTAATGTTCTA
30954754 TAGCGGCGCTTA
1 TAGCGGCGCTTA
30954766 TTTCACAAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
42 36 0.75
43 12 0.25
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.24
Consensus pattern (43 bp):
TAGCGGCGCTTAGGAAGAAAACGCCGCTAAAAGTAATGTTCTA
Found at i:30954739 original size:99 final size:99
Alignment explanation
Indices: 30954568--30954759 Score: 255
Period size: 99 Copynumber: 1.9 Consensus size: 99
30954558 GATCATGTTC
* * * *
30954568 TTTAGCAGCGCTTACGAAAAAAACGCCGCTAAAGATCATGTTTTTTAGTGGCGCTTGGGAAAAAA
1 TTTAGCAGCGCTTACGAAAAAAACGCCGCTAAAGATAATGTTCTATAGCGGCGCTTGGGAAAAAA
30954633 CGCCGCTAA-AGATCA-TGTTCTTTAGCGGATGATA
66 CGCCGCTAACAG-T-AGTGTTCTTTAGCGGATGATA
* * * **
30954667 TTTAGCGGCGCTTAGGAAGAAAACGCCGCTAAA-AGTAATGTTCTATAGCGGCGCTTGGTCAAAA
1 TTTAGCAGCGCTTACGAAAAAAACGCCGCTAAAGA-TAATGTTCTATAGCGGCGCTTGGGAAAAA
30954731 ACGCCGCTAACAGTAGTGTTCTTTAGCGG
65 ACGCCGCTAACAGTAGTGTTCTTTAGCGG
30954760 CGCTTATTTC
Statistics
Matches: 81, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
98 2 0.02
99 77 0.95
100 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (99 bp):
TTTAGCAGCGCTTACGAAAAAAACGCCGCTAAAGATAATGTTCTATAGCGGCGCTTGGGAAAAAA
CGCCGCTAACAGTAGTGTTCTTTAGCGGATGATA
Found at i:30955236 original size:21 final size:21
Alignment explanation
Indices: 30955212--30955259 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
30955202 GCTTCTATCG
*
30955212 CTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
30955233 CTGCTTCTCTCGCTGCCGCCT
1 CTGCTTCTCTCGCTGCAGCCT
30955254 CTGCTT
1 CTGCTT
30955260 TAAGTTGTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.02, C:0.42, G:0.19, T:0.38
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:30961755 original size:41 final size:41
Alignment explanation
Indices: 30961669--30961907 Score: 223
Period size: 41 Copynumber: 5.8 Consensus size: 41
30961659 TTTTGTTACT
* * * *
30961669 ATTAGTGGCGCTTC-GACAAAAACGCCGCTAAAGG-TAAATGC
1 ATTAGCGGCGC-TCAGATAAAAACGCCGCTAAAGGCCAGA-GC
* * * *
30961710 ATTAGCGGCGCTTAGATATAAATGCCGCTAAAGGCCAGAGA
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGCCAGAGC
* * * ** *
30961751 ATTAGTGGCGCTCAGATAAATACGCCACTAAAGATCTGAGC
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGCCAGAGC
* * * * *
30961792 ATTAGCGGCGCTTAGACAAAAACGCCGCTAACGGCCATAGG
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGCCAGAGC
* * *
30961833 ATTAGCGACGCACAGATAAAAACGCCGCTAAAGATCC-GAGC
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAG-GCCAGAGC
*
30961874 ATTAGCGGCGCTCAAATAAAAACGCCGCTAAAGG
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGG
30961908 TTTAAAAATC
Statistics
Matches: 154, Mismatches: 41, Indels: 7
0.76 0.20 0.03
Matches are distributed among these distances:
40 1 0.01
41 149 0.97
42 4 0.03
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.17
Consensus pattern (41 bp):
ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGCCAGAGC
Found at i:30961806 original size:82 final size:82
Alignment explanation
Indices: 30961708--30961907 Score: 274
Period size: 82 Copynumber: 2.4 Consensus size: 82
30961698 AAAGGTAAAT
* * * * * *
30961708 GCATTAGCGGCGCTTAGATATAAATGCCGCTAAAGGCCAGAGAATTAGTGGCGCTCAGATAAATA
1 GCATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGAGAATTAGCGACGCACAGATAAAAA
*
30961773 CGCCACTAAAGATCTGA
66 CGCCACTAAAGATCCGA
* * * *
30961790 GCATTAGCGGCGCTTAGACAAAAACGCCGCTAACGGCCATAGGATTAGCGACGCACAGATAAAAA
1 GCATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGAGAATTAGCGACGCACAGATAAAAA
*
30961855 CGCCGCTAAAGATCCGA
66 CGCCACTAAAGATCCGA
* *
30961872 GCATTAGCGGCGCTCAAATAAAAACGCCGCTAAAGG
1 GCATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGG
30961908 TTTAAAAATC
Statistics
Matches: 102, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
82 102 1.00
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (82 bp):
GCATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGAGAATTAGCGACGCACAGATAAAAA
CGCCACTAAAGATCCGA
Found at i:30961893 original size:123 final size:123
Alignment explanation
Indices: 30961669--30961906 Score: 291
Period size: 123 Copynumber: 1.9 Consensus size: 123
30961659 TTTTGTTACT
* * * * ** * *
30961669 ATTAGTGGCGCTTCGACAAAAACGCCGCTAAAGGTAAATGCATTAGCGGCGCTTAGATATAAATG
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGGCAAATGCATTAGCGACGCACAGATAAAAACG
* * *
30961734 CCGCTAAAGGCCAGAGAATTAGTGGCGCTCAGATAAATACGCCACTAAAGATCTGAGC
66 CCGCTAAAGGCCAGAGAATTAGCGGCGCTCAAATAAAAACGCCACTAAAGATCTGAGC
* * *
30961792 ATTAGCGGCGCTTAGACAAAAACGCCGCTAACGGC-CATAGGATTAGCGACGCACAGATAAAAAC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGGCAAAT-GCATTAGCGACGCACAGATAAAAAC
* * *
30961856 GCCGCTAAAGATCC-GAGCATTAGCGGCGCTCAAATAAAAACGCCGCTAAAG
65 GCCGCTAAAG-GCCAGAGAATTAGCGGCGCTCAAATAAAAACGCCACTAAAG
30961907 GTTTAAAAAT
Statistics
Matches: 96, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
122 2 0.02
123 92 0.96
124 2 0.02
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (123 bp):
ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGGCAAATGCATTAGCGACGCACAGATAAAAACG
CCGCTAAAGGCCAGAGAATTAGCGGCGCTCAAATAAAAACGCCACTAAAGATCTGAGC
Found at i:30962870 original size:114 final size:113
Alignment explanation
Indices: 30962658--30962870 Score: 304
Period size: 114 Copynumber: 1.9 Consensus size: 113
30962648 AAAATAAGCA
* * *
30962658 TTAGCGGCGTTTTCTAGAAAGCGCTGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCATT
1 TTAGCGGCATTTTCTAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGACCATT
* *
30962723 CAGGGATTTAGCGGCGTTTTTGAGGAAGTGCCGCTAATGCTCAGGGCT
66 CAGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGCT
* *
30962771 TTAGCGGCATTTT-TGAGAAAGTGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGACCT
1 TTAGCGGCATTTTCT-AGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGCCGTTTTCTGACCA
* *
30962835 TTCGGGGCTTTAGCGGCGTTTTTG-GTAAAGCGCCGC
64 TTCAGGGATTTAGCGGCGTTTTTGAG-AAAGCGCCGC
30962871 AAAAAAACAT
Statistics
Matches: 88, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
112 1 0.01
113 23 0.26
114 64 0.73
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (113 bp):
TTAGCGGCATTTTCTAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGACCATT
CAGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGCT
Found at i:30962885 original size:73 final size:74
Alignment explanation
Indices: 30962766--30962931 Score: 282
Period size: 73 Copynumber: 2.3 Consensus size: 74
30962756 CTAATGCTCA
* * *
30962766 GGGCTTTAGCGGCATTTTTGAGAAAGTGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTG
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTG
30962831 ACCTTTC-G
66 ACCTTTCGG
30962839 GGGCTTTAGCGGCGTTTTTG-GTAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCT
1 GGGCTTTAGCGGCGTTTTTGAG-AAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCT
30962903 GACCTTTCGG
65 GACCTTTCGG
30962913 GGGCTTTAGCGGCGTTTTT
1 GGGCTTTAGCGGCGTTTTT
30962932 AATACAGCAC
Statistics
Matches: 88, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
72 1 0.01
73 67 0.76
74 20 0.23
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.27
Consensus pattern (74 bp):
GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTG
ACCTTTCGG
Found at i:30964608 original size:50 final size:49
Alignment explanation
Indices: 30964512--30964617 Score: 124
Period size: 50 Copynumber: 2.1 Consensus size: 49
30964502 GTAATTTTAC
* ** ** *
30964512 AATTTTAAATATTTTTTATGATTTTTATATTGTTTTTCTAAGTTTTAGTA
1 AATTTTAAATATTTTTTATAATTTTTATAAAGTTTTAATAACTTTTA-TA
30964562 AATTTTAAATATTTTTTATAATTTTTATTAAAG-TTTAATAACTTTTATA
1 AATTTTAAATATTTTTTATAATTTTTA-TAAAGTTTTAATAACTTTTATA
*
30964611 ACTTTTA
1 AATTTTA
30964618 TTTGTTTTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
49 8 0.17
50 37 0.77
51 3 0.06
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (49 bp):
AATTTTAAATATTTTTTATAATTTTTATAAAGTTTTAATAACTTTTATA
Found at i:30966250 original size:3 final size:3
Alignment explanation
Indices: 30966231--30966270 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
30966221 AATTAAACAC
* * *
30966231 TAA TAA AAA TGA TAA TAA TAA TAA TAA TAA TAA TGA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
30966271 GAAATGTATA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:30971651 original size:14 final size:15
Alignment explanation
Indices: 30971622--30971651 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
30971612 GTATAAGATC
30971622 TATTTTTTTTCTCTT
1 TATTTTTTTTCTCTT
30971637 TATTTTTTTTC-CTT
1 TATTTTTTTTCTCTT
30971651 T
1 T
30971652 CGAAGCTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (15 bp):
TATTTTTTTTCTCTT
Found at i:30972449 original size:17 final size:18
Alignment explanation
Indices: 30972435--30972479 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
30972425 CATTTTTACT
30972435 TTATT-TTATTTTTTAGC
1 TTATTATTATTTTTTAGC
30972452 TTATTATTATTATTATTA--
1 TTATTATTATT-TT-TTAGC
30972470 TTATTATTAT
1 TTATTATTAT
30972480 GTATATCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 5 0.20
18 15 0.60
19 2 0.08
20 3 0.12
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTATTATTTTTTAGC
Found at i:30972460 original size:3 final size:3
Alignment explanation
Indices: 30972452--30972479 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
30972442 ATTTTTTAGC
30972452 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
30972480 GTATATCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:30976679 original size:8 final size:9
Alignment explanation
Indices: 30976663--30976712 Score: 84
Period size: 9 Copynumber: 5.6 Consensus size: 9
30976653 TCTCATGAGT
30976663 TCAAAAAAA
1 TCAAAAAAA
30976672 TCAAAAAAAA
1 TC-AAAAAAA
30976682 TCAAAAAAA
1 TCAAAAAAA
30976691 TC-AAAAAA
1 TCAAAAAAA
30976699 TCAAAAAAA
1 TCAAAAAAA
30976708 TCAAA
1 TCAAA
30976713 GTCAAAATAG
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.21
9 22 0.56
10 9 0.23
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (9 bp):
TCAAAAAAA
Found at i:30976696 original size:17 final size:17
Alignment explanation
Indices: 30976663--30976712 Score: 82
Period size: 17 Copynumber: 2.8 Consensus size: 17
30976653 TCTCATGAGT
30976663 TCAAAAAAATCAAAAAAAA
1 TCAAAAAAATC--AAAAAA
30976682 TCAAAAAAATCAAAAAA
1 TCAAAAAAATCAAAAAA
30976699 TCAAAAAAATCAAA
1 TCAAAAAAATCAAA
30976713 GTCAAAATAG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
17 20 0.65
19 11 0.35
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (17 bp):
TCAAAAAAATCAAAAAA
Found at i:30977702 original size:21 final size:21
Alignment explanation
Indices: 30977676--30977722 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
30977666 GCTCAAATGT
30977676 TGATCAGAATGGGGCATGAAG
1 TGATCAGAATGGGGCATGAAG
* *
30977697 TGATCAGATTGGGGCATGATG
1 TGATCAGAATGGGGCATGAAG
30977718 TGATC
1 TGATC
30977723 TTGTTATACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.28, C:0.11, G:0.36, T:0.26
Consensus pattern (21 bp):
TGATCAGAATGGGGCATGAAG
Found at i:30979367 original size:46 final size:46
Alignment explanation
Indices: 30978778--30979361 Score: 873
Period size: 46 Copynumber: 12.7 Consensus size: 46
30978768 TATCAATGAG
*
30978778 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCAGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
30978824 GATAGCGGATCTTATCTTCCTATATTTGGCAGCGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
30978870 GATAGCAGATCTTATCTT-TTAGTATTTGGCAGCGGAGGAGATCAAA
1 GATAGCAGATCTTATCTTCCT-GTATTTGGCAGCGGAGGAGATCGAA
30978916 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* * * * *
30978962 GATAGCAGATCTTATCTTTCTGTATGTGGTAGTGGAGGAGATCAAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
30979008 GATAGCCGATCTTATCTTCCTGTATTTGGCAGCGGAAGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
*
30979054 GATAGCAGATCTTATCTTCCTGTATTTAGCAGCGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
30979100 GATAGCAGATCTTATCTTCCTGTATTTGGTAGCAGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* * * *
30979146 GATAGTAGATCTTGTCTTCCTATATTTGGCAGCGGAGAAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
30979192 GATAGCAGATCTTATCTTCTTGTATTTGGCAGCGGAAGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* * *
30979238 GATAGCATATATTATCTTCCTGTATTTAGCAGCGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* * * *
30979284 GATAGCAGATCTTGTCTTCCTGTACTTGGCAGCAGAGGAGATCGAG
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* * *
30979330 GATAGCAGATCTTGTCTTCTTGTAATTGGCAG
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAG
30979362 TAGAGGGATT
Statistics
Matches: 483, Mismatches: 53, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.00
46 481 1.00
47 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (46 bp):
GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
Found at i:30979523 original size:132 final size:132
Alignment explanation
Indices: 30979372--30980736 Score: 2237
Period size: 132 Copynumber: 10.3 Consensus size: 132
30979362 TAGAGGGATT
* * * * *
30979372 GAAGATTACAGATTATGTCACCCTAATCAGTAGTGGAGCAGATCAAAGATGGTAAATTTTATCTT
1 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
*
30979437 CCCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
66 CCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
30979502 TC
131 TC
* *
30979504 GAAGATTGCAGATTCTGTCACCCTAATCAGTAGTTGAGCAGATCAAAGATGGTGAATCTTATCTT
1 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
* * * *
30979569 CCCAATATAATGGAGAAGCAGATTTAAGCCATTAGTCTTATCACCCTAAGAAGTAGTGGAGTAGG
66 CCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
30979634 TC
131 TC
* *
30979636 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCTTATCTT
1 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
* *
30979701 CCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTGTCACCCTAAGCAGTAGTGGAATAGG
66 CCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
30979766 TC
131 TC
* * * * * *
30979768 GAAGATTGCAGATTCTGTCACTCTAAG-AGTAGTGGAGCAGATCGAATATAGTAAATATTATCTT
1 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
* *
30979832 CCCAATACAGTGGAGAAGCAGATTTAAGTCGTTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
66 CCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
*
30979897 TT
131 TC
* *
30979899 AAAGATTGCAGATTCTGTCACCCTAATCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
1 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
*
30979964 CCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
66 CCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
*
30980029 TT
131 TC
* * * *
30980031 GAAGATTGCAGATTCTGTCACCCTAATCAGTAGTGGAGTAGATCAAAGATAGTGAATTTTATCTT
1 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
30980096 CCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
66 CCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
*
30980161 TT
131 TC
* *
30980163 AAAGATTGCAGATTCTGTCACCCTAATCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
1 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
*
30980228 CCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
66 CCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
30980293 TC
131 TC
* *
30980295 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCTTATCTT
1 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
30980360 CCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
66 CCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
30980425 TC
131 TC
* *
30980427 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCTTATCTT
1 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
* *
30980492 CCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGTAGTAGTGGAATAGG
66 CCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
30980557 TC
131 TC
* * * * *
30980559 GAAAATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAATATGGTAAATATTATCTT
1 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
* *
30980624 CCCAATACAGTGGAGAAGCAGATTTAAGCCGTTAGTCCTATCACCCTAAGCAGTAGTGGAATAGG
66 CCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
30980689 TC
131 TC
* * * *
30980691 GAAGATTGTAAATTCTGTCACCCTAAGCAGTAGTAGAGCAAATCAA
1 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAA
30980737 CAATAATGAA
Statistics
Matches: 1159, Mismatches: 73, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
131 118 0.10
132 1041 0.90
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (132 bp):
GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
CCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
TC
Found at i:30979922 original size:44 final size:43
Alignment explanation
Indices: 30979869--30980469 Score: 265
Period size: 44 Copynumber: 13.7 Consensus size: 43
30979859 GTCGTTAGTC
*
30979869 CTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTAAAGATTG-AGATT
* * * * * * *
30979913 CTGTCACCCTAATCAGTAGTGGAGCAGATCAAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTAAAGATTGAGATT
* * * * * * *
30979956 CTTATCTTCCC-AATACAGTGGAGAAGTAGATTTAAGCCATT-AG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATTAAAG--ATTGAGATT
* *
30980001 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTAAAGATTG-AGATT
* * *
30980045 CTGTCACCCTAATCAGTAGTGGAGTAGATCAAAGATAGTGA-ATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTAAAGAT--TGAGATT
* * * * * * * * *
30980089 TTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT-AG-TC
1 CTATC-ACCCTAA-GCAGTAGTGGAGTAGATTAAAG--ATTGAGATT
*
30980133 CTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTAAAGATTG-AGATT
* * * * * * *
30980177 CTGTCACCCTAATCAGTAGTGGAGCAGATCAAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTAAAGATTGAGATT
* * * * * * *
30980220 CTTATCTTCCC-AATACAGTGGAGAAGTAGATTTAAGCCATT-AG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATTAAAG--ATTGAGATT
* **
30980265 CTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTAAAGATTG-AGATT
* * ** ** * *
30980309 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTAAAGATTGAGATT
* * * * * * * *
30980352 CTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT-AG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATTAAAG--ATTGAGATT
* **
30980397 CTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTAAAGATTG-AGATT
* *
30980441 CTGTCACCCTAAGCAGTAGTGGAGCAGAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGAT
30980470 CGAAGACGGT
Statistics
Matches: 401, Mismatches: 118, Indels: 76
0.67 0.20 0.13
Matches are distributed among these distances:
41 12 0.03
43 92 0.23
44 207 0.52
45 78 0.19
46 5 0.01
47 7 0.02
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (43 bp):
CTATCACCCTAAGCAGTAGTGGAGTAGATTAAAGATTGAGATT
Found at i:30987124 original size:24 final size:24
Alignment explanation
Indices: 30987097--30987143 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
30987087 ACCGATGGCG
30987097 ACACCAAT-ACCATCATCAATGCTA
1 ACACCAATGACCA-CATCAATGCTA
*
30987121 ACACCAATGCCCACATCAATGCT
1 ACACCAATGACCACATCAATGCT
30987144 GATGTATTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 18 0.86
25 3 0.14
ACGTcount: A:0.38, C:0.36, G:0.06, T:0.19
Consensus pattern (24 bp):
ACACCAATGACCACATCAATGCTA
Found at i:30993371 original size:25 final size:25
Alignment explanation
Indices: 30993340--30993426 Score: 129
Period size: 25 Copynumber: 3.5 Consensus size: 25
30993330 ACAAGCTTTA
* * * *
30993340 AACGGTAAACTCTTTCGAGCTGAAT
1 AACGGTAAGCTCCTCCGAGCTAAAT
*
30993365 AATGGTAAGCTCCTCCGAGCTAAAT
1 AACGGTAAGCTCCTCCGAGCTAAAT
30993390 AACGGTAAGCTCCTCCGAGCTAAAT
1 AACGGTAAGCTCCTCCGAGCTAAAT
30993415 AACGGTAAGCTC
1 AACGGTAAGCTC
30993427 ATATGAGCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (25 bp):
AACGGTAAGCTCCTCCGAGCTAAAT
Found at i:30993434 original size:25 final size:25
Alignment explanation
Indices: 30993340--30993465 Score: 108
Period size: 25 Copynumber: 5.0 Consensus size: 25
30993330 ACAAGCTTTA
* * * *
30993340 AACGGTAAACTCTTTCGAGCTGAAT
1 AACGGTAAGCTCATACGAGCTAAAT
* * *
30993365 AATGGTAAGCTCCTCCGAGCTAAAT
1 AACGGTAAGCTCATACGAGCTAAAT
* *
30993390 AACGGTAAGCTCCTCCGAGCTAAAT
1 AACGGTAAGCTCATACGAGCTAAAT
* * *
30993415 AACGGTAAGCTCATATGAGCTGAGT
1 AACGGTAAGCTCATACGAGCTAAAT
* * *
30993440 ATCGATAAGCTCATAAGAGCTGAAAT
1 AACGGTAAGCTCATACGAGCT-AAAT
30993466 CGATAACCCT
Statistics
Matches: 84, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
25 82 0.98
26 2 0.02
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (25 bp):
AACGGTAAGCTCATACGAGCTAAAT
Found at i:30996398 original size:18 final size:18
Alignment explanation
Indices: 30996354--30996400 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 18
30996344 TAATATAAAT
* *
30996354 TAAATAGTAAATTATTTA
1 TAAATATTAAAATATTTA
* *
30996372 GAAAT-TTAAAATATTTC
1 TAAATATTAAAATATTTA
30996389 TAAATATTAAAA
1 TAAATATTAAAA
30996401 ATTCCGATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.40
Consensus pattern (18 bp):
TAAATATTAAAATATTTA
Found at i:30997511 original size:140 final size:139
Alignment explanation
Indices: 30997210--30997670 Score: 540
Period size: 140 Copynumber: 3.3 Consensus size: 139
30997200 TATTTTTAAA
* * * * * *
30997210 ATTTTTGTTTTAACCAAGCGCAGCCTCTCAATTTTCAAGTCCAAGATTCAAC-ACTTTGAAGTCC
1 ATTTTTGTTTTAACCAAGTGCAGCCTCTCAACTCTCAAGTCCAAGATACAACAAATTTAAAGTCC
*
30997274 AAGATCCAACTTCAAATATAACTACTTATT---C-AA--CATGCAATTTTTGTAATTTTACAGTT
66 AAGATCCAACTTCAAATATAACTACTTATTCAACTAACTCATGCAATTTTTGTAA--TTACACTT
*
30997333 CATATGCTAAT
129 CATATACTAAT
* * * *
30997344 ATTTTTGTTTTAAACAAATGCAGCCTCTCAACTCTTAAGTCTAAGATACAACAAATTCTAAAGTC
1 ATTTTTGTTTTAACCAAGTGCAGCCTCTCAACTCTCAAGTCCAAGATACAACAAATT-TAAAGTC
* * *
30997409 CAGGATCAAACTTCAAATGTAACTACTTATTCAACTAACTCATGCAATTTTTGTAATTACACTTC
65 CAAGATCCAACTTCAAATATAACTACTTATTCAACTAACTCATGCAATTTTTGTAATTACACTTC
*
30997474 ATATACTAGT
130 ATATACTAAT
* * * * * *
30997484 ATTTTTGTTTTAACCAAGTGTAGCCTCTTAACTCTCAAGTCCAAGATCCAATAGATTTTTAAGTC
1 ATTTTTGTTTTAACCAAGTGCAGCCTCTCAACTCTCAAGTCCAAGATACAACA-AATTTAAAGTC
* ** ** * *
30997549 CAAGATCCAACTTCAAATATAACTACTTATCCAACTAACTTGTGCAAAATTTGTAATTCCACTTT
65 CAAGATCCAACTTCAAATATAACTACTTATTCAACTAACTCATGCAATTTTTGTAATTACACTTC
30997614 ATATACTAAT
130 ATATACTAAT
* * * *
30997624 ATTTTTGTTTTAACTAAGTGAAACCTCTCAACTCTCAAGTTCAAGAT
1 ATTTTTGTTTTAACCAAGTGCAGCCTCTCAACTCTCAAGTCCAAGAT
30997671 CCAAATCTAT
Statistics
Matches: 276, Mismatches: 42, Indels: 12
0.84 0.13 0.04
Matches are distributed among these distances:
134 44 0.16
135 3 0.01
136 34 0.12
139 1 0.00
140 175 0.63
141 3 0.01
142 16 0.06
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.36
Consensus pattern (139 bp):
ATTTTTGTTTTAACCAAGTGCAGCCTCTCAACTCTCAAGTCCAAGATACAACAAATTTAAAGTCC
AAGATCCAACTTCAAATATAACTACTTATTCAACTAACTCATGCAATTTTTGTAATTACACTTCA
TATACTAAT
Found at i:30997797 original size:22 final size:22
Alignment explanation
Indices: 30997746--30997790 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
30997736 CACATTAGCG
30997746 AACAAATATATAAATATAAATA
1 AACAAATATATAAATATAAATA
* *
30997768 AACAAATATTTATATA-AAATA
1 AACAAATATATAAATATAAATA
30997789 AA
1 AA
30997791 ATAAATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (22 bp):
AACAAATATATAAATATAAATA
Found at i:31001599 original size:77 final size:77
Alignment explanation
Indices: 31001499--31001954 Score: 231
Period size: 81 Copynumber: 5.7 Consensus size: 77
31001489 TAAAATTATG
* * * * *
31001499 AAACAAAATCAAAATCAATTCTGTTGAATGGCAAGATTAAATC-CTGAAACAAAATTATTTAATT
1 AAACAAAATCAAAATAAAATCTGTTAAACGGCAAGAATAAATCTC-GAAACAAAATTATTTAATT
31001563 AAATCTTGTTTGC
65 AAATCTTGTTTGC
* *
31001576 AAACAAAATCAAAATAAAATCTGTTAAACGGCAGGAATAAATCTCGAAACATAATTATTTAATTA
1 AAACAAAATCAAAATAAAATCTGTTAAACGGCAAGAATAAATCTCGAAACAAAATTATTTAATTA
31001641 AATCTTCTCGTTTAG-
66 AATC-T-T-GTTT-GC
* * * * * *
31001656 AAAGAAAATCAAAATCGAATAAAATCTGTTAAACGACAGGAATAAATCCCGAAAC-AGATTATTC
1 AAACAAAATC--AA---AATAAAATCTGTTAAACGGCAAGAATAAATCTCGAAACAAAATTATTT
** * ** *
31001720 AATTATTTGTCATTTGG
61 AATTAAATCTTGTTTGC
* ** * * * * *
31001737 AAGGAAAATAAAAATTAAATAAAATCTATTAAACGGCAGGAATAAATCTCAAAAC-AGATTATTC
1 AA--ACAA-AATCA--AAATAAAATCTGTTAAACGGCAAGAATAAATCTCGAAACAAAATTATTT
** * *
31001801 AATTATTTCTCGTTTGG
61 AATTAAATCTTGTTTGC
* ** *
31001818 AAACAAAATCAAAATCGAATAAAATCTGTTAAACGACGGGAATAAATC-C-AAAAACAAATTATT
1 AAACAAAATC--AA---AATAAAATCTGTTAAACGGCAAGAATAAATCTCGAAACA-AAATTATT
* * ** * *
31001881 CAACTATTTCTCGTTTGG
60 TAATTAAATCTTGTTTGC
* * * *
31001899 AAACAAAATCAAAATCGAATAAATTTTGTTAAAAGGCGAGAATAAATCTCAAAACA
1 AAACAAAATCAAAAT---A-AAA-TCTGTTAAACGGCAAGAATAAATCTCGAAACA
31001955 GGTTTTATTT
Statistics
Matches: 308, Mismatches: 41, Indels: 54
0.76 0.10 0.13
Matches are distributed among these distances:
76 3 0.01
77 60 0.19
78 5 0.02
79 10 0.03
80 19 0.06
81 148 0.48
82 4 0.01
83 8 0.03
84 15 0.05
85 36 0.12
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.28
Consensus pattern (77 bp):
AAACAAAATCAAAATAAAATCTGTTAAACGGCAAGAATAAATCTCGAAACAAAATTATTTAATTA
AATCTTGTTTGC
Found at i:31001777 original size:81 final size:81
Alignment explanation
Indices: 31001579--31001954 Score: 430
Period size: 81 Copynumber: 4.6 Consensus size: 81
31001569 TGTTTGCAAA
* * * *
31001579 CAAAATCAAAATAAAATCTGTTAAACGGCAGGAATAAATCTCGAAACATAATTATTTAATTAAAT
1 CAAAATC-AAATAAAATCTGTTAAACGACAGGAATAAATCCCAAAACA-AATTATTCAATT--AT
*
31001644 CTTCTCGTTTAGAAAGAAAAT
62 -TTCTCGTTTGGAAAGAAAAT
* * * *
31001665 CAAAATCGAATAAAATCTGTTAAACGACAGGAATAAATCCCGAAACAGATTATTCAATTATTTGT
1 CAAAATCAAATAAAATCTGTTAAACGACAGGAATAAATCCCAAAACAAATTATTCAATTATTTCT
* *
31001730 CATTTGGAAGGAAAAT
66 CGTTTGGAAAGAAAAT
* * * * * *
31001746 AAAAATTAAATAAAATCTATTAAACGGCAGGAATAAATCTCAAAACAGATTATTCAATTATTTCT
1 CAAAATCAAATAAAATCTGTTAAACGACAGGAATAAATCCCAAAACAAATTATTCAATTATTTCT
*
31001811 CGTTTGGAAACAAAAT
66 CGTTTGGAAAGAAAAT
* * * *
31001827 CAAAATCGAATAAAATCTGTTAAACGACGGGAATAAATCCAAAAACAAATTATTCAACTATTTCT
1 CAAAATCAAATAAAATCTGTTAAACGACAGGAATAAATCCCAAAACAAATTATTCAATTATTTCT
*
31001892 CGTTTGGAAACAAAAT
66 CGTTTGGAAAGAAAAT
* * * * * *
31001908 CAAAATCGAATAAATTTTGTTAAAAGGC-GAGAATAAATCTCAAAACA
1 CAAAATCAAATAAAATCTGTTAAACGACAG-GAATAAATCCCAAAACA
31001955 GGTTTTATTT
Statistics
Matches: 253, Mismatches: 36, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
80 1 0.00
81 196 0.77
82 2 0.01
84 10 0.04
85 37 0.15
86 7 0.03
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.27
Consensus pattern (81 bp):
CAAAATCAAATAAAATCTGTTAAACGACAGGAATAAATCCCAAAACAAATTATTCAATTATTTCT
CGTTTGGAAAGAAAAT
Found at i:31001838 original size:162 final size:164
Alignment explanation
Indices: 31001580--31001955 Score: 506
Period size: 162 Copynumber: 2.3 Consensus size: 164
31001570 GTTTGCAAAC
* * *
31001580 AAAATCAAAATAAAATCTGTTAAACGGCAGGAATAAATCTCGAAACATAATTATTTAATTAAATC
1 AAAATC-AAATAAAATCTGTTAAACGGCAGGAATAAATCTCAAAACA-GATTATTCAATT-AATC
* **
31001645 TTCTCGTTTAGAAAGAAAATCAAAATCGAATAAAATCTGTTAAACGACAGGAATAAATCCCGAAA
63 TTCTCGTTTAGAAACAAAATCAAAATCGAATAAAATCTGTTAAACGACAGGAATAAATCCAAAAA
* * * **
31001710 CAGATTATTCAATTATTTGTCATTTGGAAGGAAAATA
128 CAAATTATTCAACTATTTCTCATTTGGAAACAAAATA
* *
31001747 AAAATTAAATAAAATCTATTAAACGGCAGGAATAAATCTCAAAACAGATTATTCAATT-AT-TTC
1 AAAATCAAATAAAATCTGTTAAACGGCAGGAATAAATCTCAAAACAGATTATTCAATTAATCTTC
* *
31001810 TCGTTTGGAAACAAAATCAAAATCGAATAAAATCTGTTAAACGACGGGAATAAATCCAAAAACAA
66 TCGTTTAGAAACAAAATCAAAATCGAATAAAATCTGTTAAACGACAGGAATAAATCCAAAAACAA
* *
31001875 ATTATTCAACTATTTCTCGTTTGGAAACAAAATC
131 ATTATTCAACTATTTCTCATTTGGAAACAAAATA
* * * *
31001909 AAAATCGAATAAATTTTGTTAAAAGGC-GAGAATAAATCTCAAAACAG
1 AAAATCAAATAAAATCTGTTAAACGGCAG-GAATAAATCTCAAAACAG
31001956 GTTTTATTTA
Statistics
Matches: 185, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
161 1 0.01
162 129 0.70
163 2 0.01
165 10 0.05
166 38 0.21
167 5 0.03
ACGTcount: A:0.47, C:0.13, G:0.12, T:0.27
Consensus pattern (164 bp):
AAAATCAAATAAAATCTGTTAAACGGCAGGAATAAATCTCAAAACAGATTATTCAATTAATCTTC
TCGTTTAGAAACAAAATCAAAATCGAATAAAATCTGTTAAACGACAGGAATAAATCCAAAAACAA
ATTATTCAACTATTTCTCATTTGGAAACAAAATA
Found at i:31002024 original size:87 final size:87
Alignment explanation
Indices: 31001888--31002150 Score: 277
Period size: 87 Copynumber: 3.0 Consensus size: 87
31001878 ATTCAACTAT
* * * * *
31001888 TTCTCGTTTGGAAACAAAA-TCAAAATCGAATAAATTTTGTTAAAAGGCGAGAATAAATCTCAAA
1 TTCTCGTTTGGAAACAAAATTAAAAATGGAATAAAATCTGTTGAAAGGCGAGAATAAATCTCAAA
**
31001952 ACAGGTTTTATTTAATTTTAAA
66 ACAAATTTTATTTAATTTTAAA
* * *
31001974 TTCTCATTTGGCAAA-AAAATTAAAAATGGAATAAAATCTGTTGAACGGCGAGATTAAAT-TCCG
1 TTCTCGTTTGG-AAACAAAATTAAAAATGGAATAAAATCTGTTGAAAGGCGAGAATAAATCT-C-
31002037 AAAA-AAATTTTATTTAATTTT-AA
63 AAAACAAATTTTATTTAATTTTAAA
* * * * *
31002060 TACTCGTTTGGAAACAAAATAAAAAAAATGGAATAAAATCTGTTGAATGGC-AGGAATAGATCCC
1 TTCTCGTTTGGAAACAAAAT--TAAAAATGGAATAAAATCTGTTGAAAGGCGA-GAATAAATCTC
* *
31002124 GAAACAAATTTTATTCAATTTTAAA
63 AAAACAAATTTTATTTAATTTTAAA
31002149 TT
1 TT
31002151 TTACTTTCAA
Statistics
Matches: 146, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
85 3 0.02
86 31 0.21
87 55 0.38
88 54 0.37
89 3 0.02
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.32
Consensus pattern (87 bp):
TTCTCGTTTGGAAACAAAATTAAAAATGGAATAAAATCTGTTGAAAGGCGAGAATAAATCTCAAA
ACAAATTTTATTTAATTTTAAA
Found at i:31002126 original size:88 final size:86
Alignment explanation
Indices: 31001909--31002147 Score: 250
Period size: 88 Copynumber: 2.7 Consensus size: 86
31001899 AAACAAAATC
* * * * * * **
31001909 AAAATCGAATAAATTTTGTTAAAAGGCGAGAATAAATCTC-AAAACAGGTTTTATTTAATTTTAA
1 AAAATGGAATAAAATCTGTTGAACGGCGAGAATAAATCCCGAAAA-AAATTTTATTTAATTTT-A
* *
31001973 ATTCTCATTTGGCAAAAAAATTA
64 ATACTCATTTGGCAAAAAAATAA
* *
31001996 AAAATGGAATAAAATCTGTTGAACGGCGAGATTAAATTCCGAAAAAAATTTTATTTAATTTTAAT
1 AAAATGGAATAAAATCTGTTGAACGGCGAGAATAAATCCCGAAAAAAATTTTATTTAATTTTAAT
*
31002061 ACTCGTTTGG-AAACAAAATAAAA
66 ACTCATTTGGCAAA-AAAAT--AA
* * * *
31002084 AAAATGGAATAAAATCTGTTGAATGGC-AGGAATAGATCCCGAAACAAATTTTATTCAATTTTAA
1 AAAATGGAATAAAATCTGTTGAACGGCGA-GAATAAATCCCGAAAAAAATTTTATTTAATTTTAA
31002148 ATTTTACTTT
Statistics
Matches: 128, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
85 3 0.02
86 16 0.12
87 48 0.38
88 61 0.48
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.32
Consensus pattern (86 bp):
AAAATGGAATAAAATCTGTTGAACGGCGAGAATAAATCCCGAAAAAAATTTTATTTAATTTTAAT
ACTCATTTGGCAAAAAAATAA
Found at i:31002293 original size:22 final size:22
Alignment explanation
Indices: 31002243--31002293 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
31002233 CACGTTAGCC
31002243 AATAAATATATAAATATAAATA
1 AATAAATATATAAATATAAATA
* * *
31002265 AACAAATATTTATATA-AAATAA
1 AATAAATATATAAATATAAAT-A
31002287 AATAAAT
1 AATAAAT
31002294 TGAATAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (22 bp):
AATAAATATATAAATATAAATA
Found at i:31002758 original size:20 final size:20
Alignment explanation
Indices: 31002735--31002775 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
31002725 TTAAATCAGT
*
31002735 TTGATTAAAATCAAATCAAA
1 TTGATTAAAATCAAATAAAA
**
31002755 TTGATTGGAATCAAATAAAA
1 TTGATTAAAATCAAATAAAA
31002775 T
1 T
31002776 CATGATATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.32
Consensus pattern (20 bp):
TTGATTAAAATCAAATAAAA
Found at i:31005218 original size:25 final size:25
Alignment explanation
Indices: 31005188--31005286 Score: 108
Period size: 25 Copynumber: 4.0 Consensus size: 25
31005178 GGTCACCGAT
** *
31005188 TTCAGCTCTTATGAGCTTCCCGATA
1 TTCAGCTCACATGAGCTTCCCGTTA
* *
31005213 CTCAGCTCACATGAGCTTCCTGTTA
1 TTCAGCTCACATGAGCTTCCCGTTA
* *
31005238 TTCAGCTCGCATAAGCTTCCCGTTA
1 TTCAGCTCACATGAGCTTCCCGTTA
* * *
31005263 TTCAGCTAATATGAACTTCCCGTT
1 TTCAGCTCACATGAGCTTCCCGTT
31005287 TACAACTCGT
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.34
Consensus pattern (25 bp):
TTCAGCTCACATGAGCTTCCCGTTA
Found at i:31017575 original size:68 final size:68
Alignment explanation
Indices: 31017451--31017703 Score: 235
Period size: 69 Copynumber: 3.7 Consensus size: 68
31017441 AGGCCGTAGC
* * * * * *
31017451 CTTAAATC-GACGTGCTAGGTAGATCAATTGTGATCTTAAATTAGTGAGA-TGAAAAATAGGGAC
1 CTTAAATCTG-CGTGCTATGTAGATTAGTTGTGATCTTAAATCAGCG-GACTGTAAAATAGGGAC
31017514 ACAAT
64 ACAAT
*
31017519 CTTAAATCTTCGTGCTATGTAGATCT-GTTGTGATCTTAAATCAGCGGACTGTAAAATAAGGG-C
1 CTTAAATCTGCGTGCTATGTAGAT-TAGTTGTGATCTTAAATCAGCGGACTGTAAAAT-AGGGAC
*
31017582 ACGATT
64 AC-AAT
* * ** * * * * *
31017588 TTTAAATCAGCGTGCTATGTAGATTAGTCATGATCTAAAATCAGCGGACTATAAAAAAAAGTACA
1 CTTAAATCTGCGTGCTATGTAGATTAGTTGTGATCTTAAATCAGCGGACTGT-AAAATAGGGACA
*
31017653 CTAT
65 CAAT
* * *
31017657 ATTAAATCTGCGTGCTATGTAGATTAGCTGTGAGCTTAAATCAGCGG
1 CTTAAATCTGCGTGCTATGTAGATTAGTTGTGATCTTAAATCAGCGG
31017704 GTTACAAAAT
Statistics
Matches: 150, Mismatches: 27, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
67 2 0.01
68 49 0.33
69 92 0.61
70 7 0.05
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.30
Consensus pattern (68 bp):
CTTAAATCTGCGTGCTATGTAGATTAGTTGTGATCTTAAATCAGCGGACTGTAAAATAGGGACAC
AAT
Found at i:31024922 original size:13 final size:13
Alignment explanation
Indices: 31024904--31024928 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31024894 CTGATGGTCG
31024904 AAAATGTGTCCAT
1 AAAATGTGTCCAT
31024917 AAAATGTGTCCA
1 AAAATGTGTCCA
31024929 CAGTCATCGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (13 bp):
AAAATGTGTCCAT
Found at i:31028435 original size:25 final size:25
Alignment explanation
Indices: 31028406--31028496 Score: 107
Period size: 25 Copynumber: 3.8 Consensus size: 25
31028396 TTAAGGAATC
*
31028406 TTAGTGCGCTCTGATTATTAGCACG
1 TTAGTGCTCTCTGATTATTAGCACG
31028431 TTAGTGCTCTCTGATTATTAGCACG
1 TTAGTGCTCTCTGATTATTAGCACG
** *
31028456 CCAGTGCTCTCTG---ATTAGCACA
1 TTAGTGCTCTCTGATTATTAGCACG
* *
31028478 TTTGTGCTCTCTGTTTATT
1 TTAGTGCTCTCTGATTATT
31028497 CGCTTCAGTG
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
22 18 0.32
25 38 0.68
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.41
Consensus pattern (25 bp):
TTAGTGCTCTCTGATTATTAGCACG
Found at i:31033024 original size:6 final size:6
Alignment explanation
Indices: 31033013--31033038 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
31033003 GATGACTCAC
31033013 CAAAGA CAAAGA CAAAGA CAAAGA CA
1 CAAAGA CAAAGA CAAAGA CAAAGA CA
31033039 TGAATGTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.65, C:0.19, G:0.15, T:0.00
Consensus pattern (6 bp):
CAAAGA
Found at i:31034099 original size:16 final size:17
Alignment explanation
Indices: 31034078--31034110 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
31034068 TTGAATCAAT
31034078 TTTTTAAT-ATTTTTTA
1 TTTTTAATGATTTTTTA
31034094 TTTTTAATGATTTTTTA
1 TTTTTAATGATTTTTTA
31034111 ATTGAACTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (17 bp):
TTTTTAATGATTTTTTA
Found at i:31041749 original size:20 final size:20
Alignment explanation
Indices: 31041724--31041773 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
31041714 CCCAAAGAGG
*
31041724 GAAAAATTAAAAATAAATTT
1 GAAAAATTAAAAATAAAATT
*
31041744 GAAAAATTAAAATTAAAATT
1 GAAAAATTAAAAATAAAATT
31041764 --AAAATTAAAA
1 GAAAAATTAAAA
31041774 TGAGCCAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 10 0.36
20 18 0.64
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (20 bp):
GAAAAATTAAAAATAAAATT
Found at i:31041761 original size:12 final size:12
Alignment explanation
Indices: 31041726--31041774 Score: 62
Period size: 12 Copynumber: 3.9 Consensus size: 12
31041716 CAAAGAGGGA
*
31041726 AAAATTAAAAAT
1 AAAATTAAAATT
*
31041738 AAATTTGAAAAATT
1 AAAATT--AAAATT
31041752 AAAATTAAAATT
1 AAAATTAAAATT
31041764 AAAATTAAAAT
1 AAAATTAAAAT
31041775 GAGCCAAACA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
12 22 0.69
14 10 0.31
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (12 bp):
AAAATTAAAATT
Found at i:31045211 original size:22 final size:22
Alignment explanation
Indices: 31045183--31045226 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
31045173 TGGTTAAGTG
31045183 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
31045205 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
31045227 AAAATCCCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.02, G:0.16, T:0.48
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:31048977 original size:22 final size:22
Alignment explanation
Indices: 31048949--31048993 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
31048939 AGGGGGAGTG
31048949 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
31048971 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
31048993 T
1 T
31048994 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:31049515 original size:174 final size:179
Alignment explanation
Indices: 31049203--31049522 Score: 470
Period size: 174 Copynumber: 1.8 Consensus size: 179
31049193 GTATCACTAG
* * * * * *
31049203 TTATGCCTTTTTAGGCCTCTTAAATCTGTCAACTGCTTGTACTTCTTTCAATTTTTCTTGTATTG
1 TTATGCCTTTCTAGGCCTCTCAAATATATCAACTGCTTCTACTTCTTTCAATTTTTCTTATATTG
* * * *
31049268 GGACTTTGCTGCATTTGGCTTGTCTGTCTGTATAATTAGAATGACTAGTGATTACTTTAGACGGT
66 AGACTTTGCTGCATTTGGCTTATCTCTCTGTATAATTAGAATGACTAGTGATTACTTTAGACGGA
*
31049333 TTGATGATTCATCATTGATATGATATGTCTTTAATTATTTTAGTCTGTA
131 TCGATGATTCATCATTGATATGATATGTCTTTAATTATTTTAGTCTGTA
*
31049382 TTATGCCTTTCTAGGCCTCTCAAATATATCAATTGCTTCTAC-T-TTTCAA-TTTTCTTATATTG
1 TTATGCCTTTCTAGGCCTCTCAAATATATCAACTGCTTCTACTTCTTTCAATTTTTCTTATATTG
* * *
31049444 AGACTTTGCTGCATTTGGCTTATTTCTTTGTAT-A-TAGAATGACTAGTGATTACTTTTGACGGA
66 AGACTTTGCTGCATTTGGCTTATCTCTCTGTATAATTAGAATGACTAGTGATTACTTTAGACGGA
31049507 TCGATGATTCATCATT
131 TCGATGATTCATCATT
31049523 ATTTATATGA
Statistics
Matches: 126, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
174 42 0.33
175 1 0.01
176 40 0.32
177 6 0.05
178 1 0.01
179 36 0.29
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.46
Consensus pattern (179 bp):
TTATGCCTTTCTAGGCCTCTCAAATATATCAACTGCTTCTACTTCTTTCAATTTTTCTTATATTG
AGACTTTGCTGCATTTGGCTTATCTCTCTGTATAATTAGAATGACTAGTGATTACTTTAGACGGA
TCGATGATTCATCATTGATATGATATGTCTTTAATTATTTTAGTCTGTA
Found at i:31053342 original size:48 final size:48
Alignment explanation
Indices: 31053286--31053383 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
31053276 GGGCATTTCA
31053286 TACTATCGCTATGGTAGAATGCTTTACTTTTTATGATAATTACAGATT
1 TACTATCGCTATGGTAGAATGCTTTACTTTTTATGATAATTACAGATT
31053334 TACTATCGCTATGGTAGAATGCTTTACTTTTTATGATAATTACAGATT
1 TACTATCGCTATGGTAGAATGCTTTACTTTTTATGATAATTACAGATT
31053382 TA
1 TA
31053384 GATGGTCTGG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.30, C:0.12, G:0.14, T:0.44
Consensus pattern (48 bp):
TACTATCGCTATGGTAGAATGCTTTACTTTTTATGATAATTACAGATT
Found at i:31074493 original size:18 final size:18
Alignment explanation
Indices: 31074470--31074504 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
31074460 CATTAGACCA
31074470 TTTAAATAGTTAGTGGAG
1 TTTAAATAGTTAGTGGAG
31074488 TTTAAATAGTTAGTGGA
1 TTTAAATAGTTAGTGGA
31074505 CTTTTATGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.26, T:0.40
Consensus pattern (18 bp):
TTTAAATAGTTAGTGGAG
Found at i:31079719 original size:15 final size:16
Alignment explanation
Indices: 31079699--31079728 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
31079689 TGGTGCCTTG
31079699 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
31079714 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
31079729 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:31082161 original size:14 final size:13
Alignment explanation
Indices: 31082142--31082178 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 13
31082132 ATTTTGATTA
31082142 AATAAAATTAAATT
1 AATAAAATT-AATT
31082156 AATAAAATTAATT
1 AATAAAATTAATT
31082169 -A-AAAATTAAT
1 AATAAAATTAAT
31082179 ATGGTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 9 0.39
12 1 0.04
13 4 0.17
14 9 0.39
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
AATAAAATTAATT
Found at i:31082754 original size:58 final size:61
Alignment explanation
Indices: 31082640--31082755 Score: 175
Period size: 61 Copynumber: 2.0 Consensus size: 61
31082630 AGTGATTATC
*
31082640 TTAATATTAAATTTTATCCAATATTTACCTTGTAGATAAATATTATATTAATTTAATAGAT
1 TTAATATTAAATTTAATCCAATATTTACCTTGTAGATAAATATTATATTAATTTAATAGAT
* * *
31082701 TTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAGTATTATATTAATTTAATA
1 TTAATATTAAATTTAATCCAATATTTACCTTGTAGATAAATATTATATTAATTTAATA
31082756 TTAAAGTGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
58 23 0.45
59 1 0.02
60 1 0.02
61 26 0.51
ACGTcount: A:0.41, C:0.05, G:0.04, T:0.49
Consensus pattern (61 bp):
TTAATATTAAATTTAATCCAATATTTACCTTGTAGATAAATATTATATTAATTTAATAGAT
Found at i:31082768 original size:58 final size:60
Alignment explanation
Indices: 31082642--31082776 Score: 161
Period size: 58 Copynumber: 2.3 Consensus size: 60
31082632 TGATTATCTT
* *
31082642 AATATTAAATTTTATCCAATATTTACCTTGTAGATAAATATTATATTAATTTAATAGATTT
1 AATATTAAATTTAATCCAATATTTACCTTGTAGATAAATATTATATTAATTTAATA-ATTA
* * *
31082703 AATATTAAATTTAATCTAATATTTATC-T-T-GATAAGTATTATATTAATTTAAT-ATTA
1 AATATTAAATTTAATCCAATATTTACCTTGTAGATAAATATTATATTAATTTAATAATTA
*
31082759 AAGTGATTAAGTTTAATC
1 AA-T-ATTAAATTTAATC
31082777 ATACTTGAAC
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
56 5 0.08
57 1 0.02
58 34 0.52
59 1 0.02
60 1 0.02
61 24 0.36
ACGTcount: A:0.41, C:0.05, G:0.06, T:0.47
Consensus pattern (60 bp):
AATATTAAATTTAATCCAATATTTACCTTGTAGATAAATATTATATTAATTTAATAATTA
Found at i:31083228 original size:17 final size:17
Alignment explanation
Indices: 31083191--31083238 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
31083181 GAATTTAGAA
*
31083191 GAATTTT-TGAATTAGT
1 GAATTTTGTGATTTAGT
*
31083207 GAATTTTGTGATTTATT
1 GAATTTTGTGATTTAGT
31083224 GAATTTTGTGATTTA
1 GAATTTTGTGATTTA
31083239 AAAATAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 7 0.24
17 22 0.76
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (17 bp):
GAATTTTGTGATTTAGT
Found at i:31084530 original size:46 final size:46
Alignment explanation
Indices: 31084463--31084641 Score: 216
Period size: 46 Copynumber: 3.9 Consensus size: 46
31084453 CATGGCAAAG
*
31084463 TGTGAAACGTAGGTATGGTATTCCAATGAAGAAAACCATACAGAGT
1 TGTGAAAAGTAGGTATGGTATTCCAATGAAGAAAACCATACAGAGT
* ** *
31084509 TGTGAAAAGTAGGTATGGTATTTCAATGAAGAAAACCATATTGCGT
1 TGTGAAAAGTAGGTATGGTATTCCAATGAAGAAAACCATACAGAGT
* * ** * * *
31084555 TGTGAAAAGTAAGTATGGTATTTCGGTAAAGAAAATCATACCGAGT
1 TGTGAAAAGTAGGTATGGTATTCCAATGAAGAAAACCATACAGAGT
* *
31084601 TGTGAAAAGTAGGTATGGTATTTCC-GTGAAGAAAATCATAC
1 TGTGAAAAGTAGGTATGGTA-TTCCAATGAAGAAAACCATAC
31084642 TGATTTATAG
Statistics
Matches: 116, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
46 113 0.97
47 3 0.03
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.28
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGGTATTCCAATGAAGAAAACCATACAGAGT
Found at i:31084620 original size:92 final size:92
Alignment explanation
Indices: 31084463--31084640 Score: 257
Period size: 92 Copynumber: 1.9 Consensus size: 92
31084453 CATGGCAAAG
* * *
31084463 TGTGAAACGTAGGTATGGTATTCCAATGAAGAAAACCATACAGAGTTGTGAAAAGTAGGTATGGT
1 TGTGAAAAGTAAGTATGGTATTCCAATAAAGAAAACCATACAGAGTTGTGAAAAGTAGGTATGGT
31084528 ATTTCAATGAAGAAAACCATATTGCGT
66 ATTTCAATGAAGAAAACCATATTGCGT
* ** * *
31084555 TGTGAAAAGTAAGTATGGTATTTCGGTAAAGAAAATCATACCGAGTTGTGAAAAGTAGGTATGGT
1 TGTGAAAAGTAAGTATGGTATTCCAATAAAGAAAACCATACAGAGTTGTGAAAAGTAGGTATGGT
** *
31084620 ATTTCCGTGAAGAAAATCATA
66 ATTTCAATGAAGAAAACCATA
31084641 CTGATTTATA
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.28
Consensus pattern (92 bp):
TGTGAAAAGTAAGTATGGTATTCCAATAAAGAAAACCATACAGAGTTGTGAAAAGTAGGTATGGT
ATTTCAATGAAGAAAACCATATTGCGT
Found at i:31091883 original size:3 final size:3
Alignment explanation
Indices: 31091875--31091905 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
31091865 AGAACGACAT
31091875 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
31091906 ATGGACGCAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:31098376 original size:48 final size:48
Alignment explanation
Indices: 31098314--31098501 Score: 234
Period size: 48 Copynumber: 3.9 Consensus size: 48
31098304 TAAAATAGAT
* * * * *
31098314 TTCTCGGTGGCCTGCACACAGTCCGTACCAGCTTTGTGTAATAACAGA
1 TTCTCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGA
* * * *
31098362 TTCTCGGTGACCTGCACATAGTCCGTGCCACCCTTGTATCTTAACAGG
1 TTCTCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGA
31098410 TTACT-GGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGA
1 TT-CTCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGA
* * * * *
31098458 ATATCGGTGGCCTACACACAATCCGTGCCACCCTTGTGTCATAA
1 TTCTCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAA
31098502 TAAAATATCG
Statistics
Matches: 120, Mismatches: 18, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
47 1 0.01
48 117 0.98
49 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (48 bp):
TTCTCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGA
Found at i:31105280 original size:3 final size:3
Alignment explanation
Indices: 31105274--31105312 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
31105264 CATCATCATC
31105274 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
31105313 TGGTTAATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:31105448 original size:13 final size:14
Alignment explanation
Indices: 31105418--31105452 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
31105408 TGTTTTATTG
*
31105418 AAAATGGTTTTTGA
1 AAAATGATTTTTGA
*
31105432 AAAATGATTTTTAA
1 AAAATGATTTTTGA
31105446 AAAATGA
1 AAAATGA
31105453 CTTACTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (14 bp):
AAAATGATTTTTGA
Found at i:31105676 original size:21 final size:20
Alignment explanation
Indices: 31105624--31105692 Score: 61
Period size: 21 Copynumber: 3.5 Consensus size: 20
31105614 TTATTTCATA
31105624 AATCTT-ATTATATTTTAATT
1 AATCTTAATT-TATTTTAATT
* **
31105644 AATCATGTTTTAGTTTTAATT
1 AATCTTAATTTA-TTTTAATT
*
31105665 AATCTTAATTTA-CTTAATT
1 AATCTTAATTTATTTTAATT
*
31105684 AAGCTTAAT
1 AATCTTAAT
31105693 CATTAATTCG
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
19 14 0.35
20 7 0.17
21 19 0.47
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54
Consensus pattern (20 bp):
AATCTTAATTTATTTTAATT
Found at i:31107591 original size:49 final size:49
Alignment explanation
Indices: 31107518--31107614 Score: 167
Period size: 49 Copynumber: 2.0 Consensus size: 49
31107508 TCTAGAAGGG
* * *
31107518 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACTAAGTTTAGCAATGT
1 ATAAATAGTGATAAGAGTGCAGACAGTGGAAGACCAAGTTTAGAAATGT
31107567 ATAAATAGTGATAAGAGTGCAGACAGTGGAAGACCAAGTTTAGAAATG
1 ATAAATAGTGATAAGAGTGCAGACAGTGGAAGACCAAGTTTAGAAATG
31107615 CCTAGCATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.42, C:0.07, G:0.27, T:0.24
Consensus pattern (49 bp):
ATAAATAGTGATAAGAGTGCAGACAGTGGAAGACCAAGTTTAGAAATGT
Found at i:31132154 original size:21 final size:21
Alignment explanation
Indices: 31132130--31132184 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
31132120 TAGAAAGCTC
31132130 ACACGTCTGTGTGGC-TAAGGA
1 ACACGTC-GTGTGGCTTAAGGA
*
31132151 ACACGGTCGTGT-GCTTAAGGC
1 ACAC-GTCGTGTGGCTTAAGGA
31132172 ACACGTCCGTGTG
1 ACACGT-CGTGTG
31132185 AAAATTGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
20 4 0.14
21 22 0.76
22 3 0.10
ACGTcount: A:0.20, C:0.24, G:0.33, T:0.24
Consensus pattern (21 bp):
ACACGTCGTGTGGCTTAAGGA
Found at i:31133746 original size:205 final size:204
Alignment explanation
Indices: 31133391--31133800 Score: 712
Period size: 205 Copynumber: 2.0 Consensus size: 204
31133381 AAACCCGAAA
* * *
31133391 AATATACCCGAAACTACTAGACCCAGTTTAGGGATATTACACAACCCCATTTCATCATTAAACAC
1 AATATACCCGAAACTACTAGACCCAGTTTAGGAATATTACACAACCCCATTTCACCATCAAACAC
*
31133456 ACATATTGCATATTAGAAGATATATTTCAATTTAATTTTCACATCACATATCATAATTTAAGTAT
66 ACATATTGCATATTAGAAGATATATTTCAATATAATTTTCACATCACATATCATAATTTAAGTAT
* *
31133521 TTCATATCATTTCTCATTTTATCCTTTTTAGTCCTCTACCTCGATGTTTCATATCAAAATTCAAT
131 TTCATATCATTTCCCATTTTATCCATTTTAGTCCTCTACCTCGATGTTTCATATC-AAATTCAAT
31133586 CAAACATTTC
195 CAAACATTTC
* *
31133596 AATATACCCGAAACTACTAGACCCGGTTTAGGAATATTACACAACCCTATTTCACCATCAAACAC
1 AATATACCCGAAACTACTAGACCCAGTTTAGGAATATTACACAACCCCATTTCACCATCAAACAC
* *
31133661 ACATATTTCATATTAGAAGATATATTTCAATATAATTTTCATATCACATATCATAATTTAAGTAT
66 ACATATTGCATATTAGAAGATATATTTCAATATAATTTTCACATCACATATCATAATTTAAGTAT
*
31133726 TTCATATCATTTCCCATTTTATCCATTTTAGTCCTCTACCTTGATGTTTCATATCAAATTCAATC
131 TTCATATCATTTCCCATTTTATCCATTTTAGTCCTCTACCTCGATGTTTCATATCAAATTCAATC
31133791 AAACATTTC
196 AAACATTTC
31133800 A
1 A
31133801 TATTATCATA
Statistics
Matches: 194, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
204 20 0.10
205 174 0.90
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.37
Consensus pattern (204 bp):
AATATACCCGAAACTACTAGACCCAGTTTAGGAATATTACACAACCCCATTTCACCATCAAACAC
ACATATTGCATATTAGAAGATATATTTCAATATAATTTTCACATCACATATCATAATTTAAGTAT
TTCATATCATTTCCCATTTTATCCATTTTAGTCCTCTACCTCGATGTTTCATATCAAATTCAATC
AAACATTTC
Found at i:31134589 original size:22 final size:24
Alignment explanation
Indices: 31134561--31134614 Score: 76
Period size: 22 Copynumber: 2.3 Consensus size: 24
31134551 TTTAATTTAT
*
31134561 TTAATTAATTATGA-TTTCTTAAC
1 TTAATTAATCATGACTTTCTTAAC
*
31134584 -TAATTAATCATTACTTTCTTAAC
1 TTAATTAATCATGACTTTCTTAAC
31134607 TTAATTAA
1 TTAATTAA
31134615 CACATGCACC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 11 0.41
23 9 0.33
24 7 0.26
ACGTcount: A:0.37, C:0.11, G:0.02, T:0.50
Consensus pattern (24 bp):
TTAATTAATCATGACTTTCTTAAC
Found at i:31138837 original size:20 final size:19
Alignment explanation
Indices: 31138794--31138842 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
31138784 TCCAAAATTA
*
31138794 GTATCGATATAAATTTTTG
1 GTATCGATATAAATTTTAG
31138813 GTATCGATAT-AATTTTCAAG
1 GTATCGATATAAATTTT--AG
31138833 GTATCGATAT
1 GTATCGATAT
31138843 TTATTGTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 6 0.22
19 10 0.37
20 11 0.41
ACGTcount: A:0.33, C:0.08, G:0.16, T:0.43
Consensus pattern (19 bp):
GTATCGATATAAATTTTAG
Found at i:31147088 original size:47 final size:47
Alignment explanation
Indices: 31147019--31147111 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
31147009 GGTTCGGCCC
31147019 CAATTGCCTACTCCACTACCTTAGCTTTCCACAACTAAATATTTTCT
1 CAATTGCCTACTCCACTACCTTAGCTTTCCACAACTAAATATTTTCT
*
31147066 CAATTGCCTACTCCACTACCTTAGCTTTCCACAACTAGATATTTTC
1 CAATTGCCTACTCCACTACCTTAGCTTTCCACAACTAAATATTTTC
31147112 CCAAATTCAC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.27, C:0.32, G:0.05, T:0.35
Consensus pattern (47 bp):
CAATTGCCTACTCCACTACCTTAGCTTTCCACAACTAAATATTTTCT
Found at i:31166727 original size:13 final size:13
Alignment explanation
Indices: 31166709--31166734 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
31166699 ATACTTATTT
31166709 CGTACAAAACTGA
1 CGTACAAAACTGA
31166722 CGTACAAAACTGA
1 CGTACAAAACTGA
31166735 TGCTTAACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.15, T:0.15
Consensus pattern (13 bp):
CGTACAAAACTGA
Found at i:31175320 original size:30 final size:30
Alignment explanation
Indices: 31175281--31175351 Score: 133
Period size: 30 Copynumber: 2.4 Consensus size: 30
31175271 ATTACAAGGG
*
31175281 ACACACGGCTGTGTCACTTAGCCGTGTGCC
1 ACACCCGGCTGTGTCACTTAGCCGTGTGCC
31175311 ACACCCGGCTGTGTCACTTAGCCGTGTGCC
1 ACACCCGGCTGTGTCACTTAGCCGTGTGCC
31175341 ACACCCGGCTG
1 ACACCCGGCTG
31175352 AGACACACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.15, C:0.37, G:0.27, T:0.21
Consensus pattern (30 bp):
ACACCCGGCTGTGTCACTTAGCCGTGTGCC
Found at i:31179512 original size:29 final size:28
Alignment explanation
Indices: 31179462--31179534 Score: 69
Period size: 29 Copynumber: 2.6 Consensus size: 28
31179452 TGGAGTCTCG
*
31179462 CCACAAAGG-TGTCCTTT-AAGAGGTTTA
1 CCACAAAGGTTGT-CTTTCTAGAGGTTTA
** * *
31179489 CCATGAAGGCTTGTCTTTCTAGAGTTTTG
1 CCACAAAGG-TTGTCTTTCTAGAGGTTTA
31179518 CCACAAAGGTTGTCTTT
1 CCACAAAGGTTGTCTTT
31179535 TTACAAGTGT
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
27 7 0.19
28 12 0.33
29 17 0.47
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (28 bp):
CCACAAAGGTTGTCTTTCTAGAGGTTTA
Found at i:31179841 original size:53 final size:53
Alignment explanation
Indices: 31179728--31179846 Score: 132
Period size: 53 Copynumber: 2.2 Consensus size: 53
31179718 CCCACACAAT
* ** * *
31179728 ATGGTCTTCTTTCCATATGATTCCATAACCTGCCAGTTACGATTTTACATGAA
1 ATGGTCTTCTTTCCATATGATGCCATAACCCACCAGTTACGATCTTACACGAA
* * * * *
31179781 ATAGTCTTGTTTCCGTATGATGCCATAACCCATCAGTTAC-AGTCTTACACGAC
1 ATGGTCTTCTTTCCATATGATGCCATAACCCACCAGTTACGA-TCTTACACGAA
31179834 ATGGTCTTCTTTC
1 ATGGTCTTCTTTC
31179847 AGTGTCATGG
Statistics
Matches: 53, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
52 1 0.02
53 52 0.98
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (53 bp):
ATGGTCTTCTTTCCATATGATGCCATAACCCACCAGTTACGATCTTACACGAA
Found at i:31181207 original size:28 final size:28
Alignment explanation
Indices: 31181176--31181237 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
31181166 GAATTACTTA
31181176 AAAATTA-AAAAAAAACTAGAA-AAATTAT
1 AAAATTATAAAAAAAA-TAGAACAAA-TAT
* *
31181204 AAAATTATAGAAAAAATATAACAAATAT
1 AAAATTATAAAAAAAATAGAACAAATAT
31181232 AAAATT
1 AAAATT
31181238 TACTAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 20 0.67
29 10 0.33
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.24
Consensus pattern (28 bp):
AAAATTATAAAAAAAATAGAACAAATAT
Found at i:31181493 original size:15 final size:15
Alignment explanation
Indices: 31181456--31181493 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
31181446 ATTATTTTTT
31181456 ATTATTTAAATAATA
1 ATTATTTAAATAATA
31181471 ATTTATTTGAAATAA-A
1 A-TTATTT-AAATAATA
31181487 ATTATTT
1 ATTATTT
31181494 TTTATTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 7 0.33
16 8 0.38
17 6 0.29
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (15 bp):
ATTATTTAAATAATA
Found at i:31181662 original size:17 final size:17
Alignment explanation
Indices: 31181629--31181662 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
31181619 ATGTGATTTA
*
31181629 TAAAATTTTTAAAATAT
1 TAAAATTTCTAAAATAT
*
31181646 TAAAATTTCTAATATAT
1 TAAAATTTCTAAAATAT
31181663 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (17 bp):
TAAAATTTCTAAAATAT
Found at i:31181868 original size:87 final size:87
Alignment explanation
Indices: 31181777--31182106 Score: 382
Period size: 87 Copynumber: 3.7 Consensus size: 87
31181767 TTAAGGGTGT
* *
31181777 AAAAAGCCCTCAAACTTTTTCAAAAAAAGTAATTAAGCCC-CTGCTTTTTTTGCACTCAATTGGA
1 AAAAAGCCCT-AAACTTTTTCAAAAAAAGAAATTAAGCCCTCTTCTTTTTTTGCACTCAATTGGA
31181841 TACTTAAACTTTCAAAATGCATC
65 TACTTAAACTTTCAAAATGCATC
* *
31181864 AAAAAGGCCCTAAACTTTTTCAAAAATAGAAATTAAG-CCTCTTCTTTTTTCGCACTCAATTGGA
1 AAAAA-GCCCTAAACTTTTTCAAAAAAAGAAATTAAGCCCTCTTCTTTTTTTGCACTCAATTGGA
31181928 TACTTAAACTTTCAAAATGCATC
65 TACTTAAACTTTCAAAATGCATC
* * *
31181951 AAAAAGACCCTAAACTTTTTCAAAAATAGAAATTAAGCCTCTGCTCTCTTTTTTTTACACTTAAT
1 AAAAAG-CCCTAAACTTTTTCAAAAAAAGAAATTAAGCC-CT-CT-TC-TTTTTTTGCACTCAAT
* * *
31182016 TAGG-TACTTGAA-TTGCCAAAATGCATA
61 T-GGATACTTAAACTT-TCAAAATGCATC
** * * *
31182043 AAAAAAACCTCAAACTTTTTC-AAAAAAGCAATTAAGGCCCTAATTTTTTTTTTGCACTCAATTG
1 AAAAAGCCCT-AAACTTTTTCAAAAAAAGAAATTAA-GCCCT-CTTCTTTTTTTGCACTCAATTG
31182107 CCAAAAATGC
Statistics
Matches: 212, Mismatches: 19, Indels: 23
0.83 0.07 0.09
Matches are distributed among these distances:
86 3 0.01
87 109 0.51
88 7 0.03
89 17 0.08
90 3 0.01
91 22 0.10
92 49 0.23
93 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (87 bp):
AAAAAGCCCTAAACTTTTTCAAAAAAAGAAATTAAGCCCTCTTCTTTTTTTGCACTCAATTGGAT
ACTTAAACTTTCAAAATGCATC
Found at i:31182305 original size:30 final size:30
Alignment explanation
Indices: 31182255--31182327 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 30
31182245 AAAGATCAAT
*
31182255 AAAAGTTATAAAAATTATTAAATTTTAATA
1 AAAAGTTATAAAAATAATTAAATTTTAATA
* *
31182285 AAAAG-TATAAGAAATAATTAATTTTTATTA
1 AAAAGTTATAA-AAATAATTAAATTTTAATA
*
31182315 AAAA-TTAGAAAAA
1 AAAAGTTATAAAAA
31182328 GATTATAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 8 0.22
30 29 0.78
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (30 bp):
AAAAGTTATAAAAATAATTAAATTTTAATA
Found at i:31182370 original size:20 final size:20
Alignment explanation
Indices: 31182341--31182383 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
31182331 TATAAAACAT
* * *
31182341 AAAAATGTAAAATTTTATAA
1 AAAAAGGTAAAAATATATAA
31182361 AAAAAGGTAAAAATATATAA
1 AAAAAGGTAAAAATATATAA
31182381 AAA
1 AAA
31182384 TATATAGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (20 bp):
AAAAAGGTAAAAATATATAA
Found at i:31182408 original size:12 final size:10
Alignment explanation
Indices: 31182368--31182409 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
31182358 TAAAAAAAGG
31182368 TAAAAATATA
1 TAAAAATATA
31182378 TAAAAATATA
1 TAAAAATATA
*
31182388 TAGAAATATA
1 TAAAAATATA
* *
31182398 GAAATATATA
1 TAAAAATATA
31182408 TA
1 TA
31182410 TAATTTTATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (10 bp):
TAAAAATATA
Found at i:31182518 original size:11 final size:11
Alignment explanation
Indices: 31182502--31182531 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
31182492 ATAAGAAGCA
31182502 TTTTATAATTT
1 TTTTATAATTT
31182513 TTTTATAATTT
1 TTTTATAATTT
*
31182524 TTCTATAA
1 TTTTATAA
31182532 CTTCTATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTTATAATTT
Found at i:31182720 original size:21 final size:21
Alignment explanation
Indices: 31182696--31182738 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
31182686 TTTTTTATGA
*
31182696 TTTTTATAAAATTTTAGAATTT
1 TTTTTAT-AAATTTTACAATTT
*
31182718 TTTTTATATATTTTACAATTT
1 TTTTTATAAATTTTACAATTT
31182739 ATATATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (21 bp):
TTTTTATAAATTTTACAATTT
Found at i:31182767 original size:57 final size:55
Alignment explanation
Indices: 31182679--31182787 Score: 134
Period size: 57 Copynumber: 1.9 Consensus size: 55
31182669 TTTGATGTAT
*
31182679 TTTATAATTTTTTATGATTTTTATAAAATTTTAGAAT-TTTTTTTATATATTTTACAA
1 TTTATAATTTTTTA-GATTTTTATAAAATTTTA-AATATTCTTTTATAT-TTTTACAA
31182736 TTTATATATTTTTCTA-ATTTTTAGT-AAATTTTAAATATTCTTTTATATTTTT
1 TTTATA-ATTTTT-TAGATTTTTA-TAAAATTTTAAATATTCTTTTATATTTTT
31182788 GTTAAAGTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
56 7 0.15
57 31 0.66
58 7 0.15
59 2 0.04
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (55 bp):
TTTATAATTTTTTAGATTTTTATAAAATTTTAAATATTCTTTTATATTTTTACAA
Found at i:31182799 original size:30 final size:29
Alignment explanation
Indices: 31182736--31182807 Score: 69
Period size: 30 Copynumber: 2.4 Consensus size: 29
31182726 TATTTTACAA
* *
31182736 TTTATATATTTTTCTAATTTTTAGTAAAT
1 TTTAAATATTTTTCTAATTTTTAGTAAAG
31182765 TTTAAATATTCTTT-TATATTTTT-GTTAAAG
1 TTTAAATATT-TTTCTA-ATTTTTAG-TAAAG
31182795 TTT-AATCATTTTT
1 TTTAAAT-ATTTTT
31182808 ATTTTTTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
29 18 0.49
30 19 0.51
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.62
Consensus pattern (29 bp):
TTTAAATATTTTTCTAATTTTTAGTAAAG
Found at i:31183118 original size:90 final size:90
Alignment explanation
Indices: 31182945--31183163 Score: 255
Period size: 90 Copynumber: 2.5 Consensus size: 90
31182935 TACATTTTGG
* * * * * * * *
31182945 CAATTGAGTGCAAAAAAGAGCAGGGACTTAATTGC-TTGTTTTGAAAATTTTTGAGGGTATTTTT
1 CAATTGACTGAAAAAAAAAGCAGGGGCTTAATTGCTTTTTTTTGAAAATGTTTGAAGGCATTTTT
* *
31183009 GATGCATTTTGACAGTTCAAGTACC
66 GATGCATTTTGAAACTTCAAGTACC
** *
31183034 CAATTGACT-AAGAAAAAAAGCAGGGGCTTAATTGCTTTTTTTTTTAAATGTTTGAAGGCCTTTT
1 CAATTGACTGAA-AAAAAAAGCAGGGGCTTAATTGCTTTTTTTTGAAAATGTTTGAAGGCATTTT
31183098 TGATGCATTTTGAAACTTCAAGTACC
65 TGATGCATTTTGAAACTTCAAGTACC
* * * *
31183124 TAATTGAGTGCAAAAAAAAG-GGGGGCTTAATTGCTTTTTT
1 CAATTGACTGAAAAAAAAAGCAGGGGCTTAATTGCTTTTTT
31183164 AAAAAAAGTT
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
88 1 0.01
89 48 0.44
90 60 0.55
91 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (90 bp):
CAATTGACTGAAAAAAAAAGCAGGGGCTTAATTGCTTTTTTTTGAAAATGTTTGAAGGCATTTTT
GATGCATTTTGAAACTTCAAGTACC
Found at i:31183256 original size:19 final size:18
Alignment explanation
Indices: 31183210--31183256 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 18
31183200 TTTAAAATAA
*
31183210 TTTTTAGAATTTTTTATTT
1 TTTTTA-AATTTTTTATAT
31183229 TTTTGTAAATTTTATTATAT
1 TTTT-TAAATTTT-TTATAT
31183249 TTTTTAAA
1 TTTTTAAA
31183257 ATATTTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (18 bp):
TTTTTAAATTTTTTATAT
Found at i:31183258 original size:20 final size:18
Alignment explanation
Indices: 31183210--31183265 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 18
31183200 TTTAAAATAA
*
31183210 TTTTTAGAATTTTTTATT
1 TTTTTAAAATTTTTTATT
*
31183228 TTTTTGTAAATTTTATTATAT
1 TTTTT-AAAATTTT-TTAT-T
31183249 TTTTTAAAATATTTTTA
1 TTTTTAAAAT-TTTTTA
31183266 ATGGTTTTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 5 0.16
19 6 0.19
20 11 0.35
21 9 0.29
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.68
Consensus pattern (18 bp):
TTTTTAAAATTTTTTATT
Found at i:31185248 original size:46 final size:46
Alignment explanation
Indices: 31185142--31185398 Score: 247
Period size: 46 Copynumber: 5.6 Consensus size: 46
31185132 GATCAGAGGG
* * * * * * *
31185142 TGCCATGGTGTCTTTTAA-TCATGGTCTTATTTATTCT-CGACTTGA
1 TGCCATAGTGTCTTTCAACT-ATGGTCTTATTCATTTTCCGTCGTGT
* * *
31185187 TGCCATAGTGTCTTTCAACCATGTTCTTATTCATTTTCCGTTGTGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCCGTCGTGT
* * * *
31185233 TTCTATAGTGCCTTTCAACTATGGTCTTATTCATTTTCCGTCATGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCCGTCGTGT
* * *
31185279 TGCCATAGCGTCTTTTAACTATGGTCTTATTCATTTTCCGCCGTGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCCGTCGTGT
* * *
31185325 TGCCATAGTGTCTTTCAACTATGG-CATTATTTA-TTT-C-TAGTAT
1 TGCCATAGTGTCTTTCAACTATGGTC-TTATTCATTTTCCGTCGTGT
*
31185368 AGTGTCATAGTGTCTTTCAACTATGGTCTTA
1 --TGCCATAGTGTCTTTCAACTATGGTCTTA
31185399 ATAATTTCCT
Statistics
Matches: 175, Mismatches: 31, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
43 3 0.02
44 1 0.01
45 60 0.34
46 111 0.63
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (46 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCCGTCGTGT
Found at i:31189962 original size:17 final size:17
Alignment explanation
Indices: 31189940--31189993 Score: 56
Period size: 17 Copynumber: 3.0 Consensus size: 17
31189930 TTGTTTCAAG
31189940 TTTTTTTTAATTAATAA
1 TTTTTTTTAATTAATAA
*
31189957 TTTTTTTTCAATT-TTAA
1 TTTTTTTT-AATTAATAA
31189974 TTCATCTTTTTAATTAATAA
1 TT--T-TTTTTAATTAATAA
31189994 ATATTTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
17 13 0.43
18 4 0.13
19 5 0.17
20 8 0.27
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTTTTTTAATTAATAA
Found at i:31190200 original size:17 final size:17
Alignment explanation
Indices: 31190169--31190202 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
31190159 TAATTAATTG
*
31190169 AAATATTTCACATATAA
1 AAATATTTCAAATATAA
*
31190186 AAATATTTGAAATATAA
1 AAATATTTCAAATATAA
31190203 TACTCACAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.35
Consensus pattern (17 bp):
AAATATTTCAAATATAA
Found at i:31207973 original size:24 final size:24
Alignment explanation
Indices: 31207926--31207973 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
31207916 CCGTTCTGTG
**
31207926 GCAAAGGATGAATTGACGGTAAAT
1 GCAAAGGATGAATTGACGACAAAT
31207950 GCAAAGGATGAATTGACGACAAAT
1 GCAAAGGATGAATTGACGACAAAT
31207974 CACCCAAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.44, C:0.10, G:0.27, T:0.19
Consensus pattern (24 bp):
GCAAAGGATGAATTGACGACAAAT
Found at i:31210948 original size:12 final size:12
Alignment explanation
Indices: 31210933--31210958 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
31210923 AAAAATAAAC
31210933 CAAATAAAATAA
1 CAAATAAAATAA
31210945 CAAATAAAATAA
1 CAAATAAAATAA
31210957 CA
1 CA
31210959 GTCCGATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.73, C:0.12, G:0.00, T:0.15
Consensus pattern (12 bp):
CAAATAAAATAA
Found at i:31211899 original size:17 final size:17
Alignment explanation
Indices: 31211877--31211910 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
31211867 TATTCTTTAA
31211877 ATTTCGACTT-ATAATTT
1 ATTTCGA-TTCATAATTT
31211894 ATTTCGATTCATAATTT
1 ATTTCGATTCATAATTT
31211911 GGTCCCTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.53
Consensus pattern (17 bp):
ATTTCGATTCATAATTT
Found at i:31224864 original size:22 final size:22
Alignment explanation
Indices: 31224836--31224912 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
31224826 TTTCTTTTAA
31224836 TTAGGAGATTAGATGCTAAAGT
1 TTAGGAGATTAGATGCTAAAGT
** * *
31224858 TTAGGAGATAATATTTTGGTTTAA--
1 TTAGGAGAT--TA-GAT-GCTAAAGT
31224882 TTAGGAGATTAGATGCTAAAGT
1 TTAGGAGATTAGATGCTAAAGT
31224904 TTAGGAGAT
1 TTAGGAGAT
31224913 AATATTTTGG
Statistics
Matches: 41, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
20 4 0.10
21 1 0.02
22 20 0.49
24 11 0.27
25 1 0.02
26 4 0.10
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.36
Consensus pattern (22 bp):
TTAGGAGATTAGATGCTAAAGT
Found at i:31224885 original size:46 final size:46
Alignment explanation
Indices: 31224831--31224925 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
31224821 TCTCTTTTCT
31224831 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
1 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
31224877 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
1 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
31224923 TTT
1 TTT
31224926 CTATATTTGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.34, C:0.02, G:0.23, T:0.41
Consensus pattern (46 bp):
TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
Found at i:31229442 original size:22 final size:22
Alignment explanation
Indices: 31229414--31229490 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
31229404 TCTCTTTTAA
31229414 TTAGGAGATTAGATGCTAAAGT
1 TTAGGAGATTAGATGCTAAAGT
** * *
31229436 TTAGGAGATAATATTTTGGTTTAA--
1 TTAGGAGAT--TA-GAT-GCTAAAGT
31229460 TTAGGAGATTAGATGCTAAAGT
1 TTAGGAGATTAGATGCTAAAGT
31229482 TTAGGAGAT
1 TTAGGAGAT
31229491 AATATTTTGG
Statistics
Matches: 41, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
20 4 0.10
21 1 0.02
22 20 0.49
24 11 0.27
25 1 0.02
26 4 0.10
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.36
Consensus pattern (22 bp):
TTAGGAGATTAGATGCTAAAGT
Found at i:31229463 original size:46 final size:46
Alignment explanation
Indices: 31229409--31229503 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
31229399 TCTCTTCTCT
31229409 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
1 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
31229455 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
1 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
31229501 TTT
1 TTT
31229504 CTATCTTTGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.34, C:0.02, G:0.23, T:0.41
Consensus pattern (46 bp):
TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
Found at i:31234393 original size:13 final size:13
Alignment explanation
Indices: 31234364--31234406 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
31234354 TTAGTTATAA
31234364 ATTTTTATAACATAT
1 ATTTTTAT-A-ATAT
31234379 ATTTTTATAATAT
1 ATTTTTATAATAT
* *
31234392 ATATTTGTAATAT
1 ATTTTTATAATAT
31234405 AT
1 AT
31234407 ATAAATTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 17 0.65
14 1 0.04
15 8 0.31
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (13 bp):
ATTTTTATAATAT
Done.