Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 119 of 226
Found at i:36893272 original size:30 final size:30
Alignment explanation
Indices: 36893215--36893281 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
36893205 TTCCAGCTCC
**
36893215 TTTAGCTCGTTTCAGCTCCAATCAGCTC-A
1 TTTAGCTCAATTCAGCTCCAATCAGCTCAA
*
36893244 TTTGAGCTCAATTCAGCT-CATTCGAGCTCAA
1 TTT-AGCTCAATTCAGCTCCAATC-AGCTCAA
36893275 TTTAGCT
1 TTTAGCT
36893282 TTCTATCAGC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
29 7 0.22
30 21 0.66
31 4 0.12
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (30 bp):
TTTAGCTCAATTCAGCTCCAATCAGCTCAA
Found at i:36896849 original size:16 final size:16
Alignment explanation
Indices: 36896824--36896858 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
36896814 ATTTAATCCC
* *
36896824 TAATACTAAAACTATT
1 TAATAATAAAAATATT
36896840 TAATAATAAAAATATT
1 TAATAATAAAAATATT
36896856 TAA
1 TAA
36896859 AATCTTAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (16 bp):
TAATAATAAAAATATT
Found at i:36897011 original size:4 final size:4
Alignment explanation
Indices: 36897002--36897056 Score: 51
Period size: 4 Copynumber: 13.8 Consensus size: 4
36896992 CCGTGCGCGA
** *
36897002 CTTT CTTT CTCC CTTT CTTT -TCTT -TTT CTTT CTTT TTTT CTTT CTTTT
1 CTTT CTTT CTTT CTTT CTTT CT-TT CTTT CTTT CTTT CTTT CTTT C-TTT
36897050 CTTT CTT
1 CTTT CTT
36897057 AATTTGCATG
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
3 3 0.07
4 35 0.83
5 4 0.10
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
CTTT
Found at i:36897037 original size:9 final size:9
Alignment explanation
Indices: 36897014--36897056 Score: 61
Period size: 9 Copynumber: 4.8 Consensus size: 9
36897004 TTCTTTCTCC
36897014 CTTTCTTTT
1 CTTTCTTTT
*
36897023 CTTTTTCTTT
1 CTTTCT-TTT
36897033 CTTT-TTTT
1 CTTTCTTTT
36897041 CTTTCTTTT
1 CTTTCTTTT
36897050 CTTTCTT
1 CTTTCTT
36897057 AATTTGCATG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
8 7 0.23
9 17 0.55
10 7 0.23
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (9 bp):
CTTTCTTTT
Found at i:36899276 original size:22 final size:21
Alignment explanation
Indices: 36899250--36899300 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
36899240 AAGAGGTTTC
*
36899250 TAAATTTTTTTTGAAGTTTCAA
1 TAAATTTTTCTTG-AGTTTCAA
* *
36899272 TAAATATTTCTTGAGTTTTAA
1 TAAATTTTTCTTGAGTTTCAA
*
36899293 TGAATTTT
1 TAAATTTT
36899301 CAGAAAATAG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.31, C:0.04, G:0.10, T:0.55
Consensus pattern (21 bp):
TAAATTTTTCTTGAGTTTCAA
Found at i:36901260 original size:27 final size:27
Alignment explanation
Indices: 36901212--36901263 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
36901202 AAAAACATTT
*
36901212 ATATACATGATATCAATTTATTCAAAA
1 ATATACATGATATCAATATATTCAAAA
36901239 ATATACATGATATTC-ATATATTCAA
1 ATATACATGATA-TCAATATATTCAA
36901264 TATATATGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.46, C:0.12, G:0.04, T:0.38
Consensus pattern (27 bp):
ATATACATGATATCAATATATTCAAAA
Found at i:36908425 original size:15 final size:16
Alignment explanation
Indices: 36908395--36908431 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
36908385 AATTTTGAAC
36908395 AAATA-ATATGAAAAA
1 AAATATATATGAAAAA
*
36908410 ATATATATAT-AAAAA
1 AAATATATATGAAAAA
36908425 AAATATA
1 AAATATA
36908432 CATTATACAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (16 bp):
AAATATATATGAAAAA
Found at i:36908493 original size:26 final size:26
Alignment explanation
Indices: 36908443--36908494 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
36908433 ATTATACACA
*
36908443 AAAACAATTTTAAAATACTACGTATG
1 AAAACAATTTTAAAATAATACGTATG
*
36908469 AAAA-AATTTTAAAAGTAATATGTATG
1 AAAACAATTTTAAAA-TAATACGTATG
36908495 TACATATAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.33
Consensus pattern (26 bp):
AAAACAATTTTAAAATAATACGTATG
Found at i:36921445 original size:31 final size:31
Alignment explanation
Indices: 36921407--36921468 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
36921397 GACTGTGGAA
36921407 AGAAAAAAAAATAGGGTTCTTTCTTTTATTT
1 AGAAAAAAAAATAGGGTTCTTTCTTTTATTT
36921438 AGAAAAAAAAATAGGGTTCTTTCTTTTATTT
1 AGAAAAAAAAATAGGGTTCTTTCTTTTATTT
36921469 TATTTTTTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42
Consensus pattern (31 bp):
AGAAAAAAAAATAGGGTTCTTTCTTTTATTT
Found at i:36942305 original size:128 final size:128
Alignment explanation
Indices: 36942074--36942326 Score: 443
Period size: 128 Copynumber: 2.0 Consensus size: 128
36942064 TGCATGCTTC
* *
36942074 CTTAATCGCCAACACTTTTGCACTAGAGGCATCGACATTAACTTCAACACTCCTGAATATGGTGC
1 CTTAATCGCCAACACTTTTGCAATAGAGGCATCAACATTAACTTCAACACTCCTGAATATGGTGC
* *
36942139 ACTCTATCGAGCTGAAGGCCTCACCCTTTTATATTTTTTCTTCAATCTAAAACAATTAGAAAA
66 ACTCTATCGAGCCGAAGGCCTCACCCTTTTATACTTTTTCTTCAATCTAAAACAATTAGAAAA
* * *
36942202 CTTAATTGCCAACACTTTTGCAATAGAGGCATCAACATTAACTTCAACACTCCTGACTGTGGTGC
1 CTTAATCGCCAACACTTTTGCAATAGAGGCATCAACATTAACTTCAACACTCCTGAATATGGTGC
36942267 ACTCTATCGAGCCGAAGGCCTCACCCTTTTATACTTTTTCTTCAATCTAAAACAATTAGA
66 ACTCTATCGAGCCGAAGGCCTCACCCTTTTATACTTTTTCTTCAATCTAAAACAATTAGA
36942327 GAATCTGGAA
Statistics
Matches: 118, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
128 118 1.00
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (128 bp):
CTTAATCGCCAACACTTTTGCAATAGAGGCATCAACATTAACTTCAACACTCCTGAATATGGTGC
ACTCTATCGAGCCGAAGGCCTCACCCTTTTATACTTTTTCTTCAATCTAAAACAATTAGAAAA
Found at i:36942841 original size:31 final size:31
Alignment explanation
Indices: 36942805--36942876 Score: 110
Period size: 31 Copynumber: 2.3 Consensus size: 31
36942795 ATATTAAAAC
36942805 TATACATGAACTTTGAACTAATGTTG-AATGT
1 TATACATGAACTTTGAACTAATG-TGCAATGT
*
36942836 TATACATGAACTTTGAACTAATGTGCAATTT
1 TATACATGAACTTTGAACTAATGTGCAATGT
*
36942867 TATATATGAA
1 TATACATGAA
36942877 ATTTAATTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 2 0.05
31 36 0.95
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.39
Consensus pattern (31 bp):
TATACATGAACTTTGAACTAATGTGCAATGT
Found at i:36966989 original size:301 final size:301
Alignment explanation
Indices: 36966447--36967048 Score: 1096
Period size: 301 Copynumber: 2.0 Consensus size: 301
36966437 ATGAAACATC
*
36966447 ATTGTTTGATCCTTGAAACATTATGAAAATTGTTTAATCATTGGAACATTTAACAGACTTTCAAC
1 ATTGTTTGATCCTTGAAACATTATGAAAATTGTTTAATCATTGGAACATTTAACAGACTTTAAAC
36966512 ATTATACTTACATTAAATCAACAAATTGCATGTCTATTGTCACTCTTTTCTTTTACATACACTTG
66 ATTATACTTACATTAAATCAACAAATTGCATGTCTATTGTCACTCTTTTCTTTTACATACACTTG
* *
36966577 ACATATATGTCGAAACCGTTTTTTTGAAAACAAAAATTTTATAGTCGACTTTAAAAATAAAATTG
131 ACATATATGTCGAAACCGTTTTTTTGAAAACAAAAATTTTATAGCCGACTTTAAAAATAAAACTG
* * *
36966642 GAGTCGCCACCGATCCTTTATTAAGGTGTGATCGGCTCACCTTAAAAATTATTTTGGTCTACGAA
196 GAGTCACCACCGATCCTTTATTAAGATGTGATCGGCTCACCTTAAAAATTATTTTAGTCTACGAA
*
36966707 TTTTGAGAAAACGAGTTCGGGAGTCAGTTACGTACGAGGAA
261 TTTTGAGAAAACGAGTTCGGGAATCAGTTACGTACGAGGAA
* *
36966748 ATTGTTTGATCCTTGGAACATTATGAAAATTGTTTGATCATTGGAACATTTAACAGACTTTAAAC
1 ATTGTTTGATCCTTGAAACATTATGAAAATTGTTTAATCATTGGAACATTTAACAGACTTTAAAC
36966813 ATTATACTTACATTAAATCAACAAATTGCATGTCTATTGTCACTCTTTTCTTTTACATACACTTG
66 ATTATACTTACATTAAATCAACAAATTGCATGTCTATTGTCACTCTTTTCTTTTACATACACTTG
* * *
36966878 ATATATATGTCGAAACCGTTTTTTTGAAAACAAAAATTTTGTTGCCGACTTTAAAAATAAAACTG
131 ACATATATGTCGAAACCGTTTTTTTGAAAACAAAAATTTTATAGCCGACTTTAAAAATAAAACTG
36966943 GAGTCACCACCGATCCTTTATTAAGATGTGATCGGCTCACCTTAAAAATTATTTTAGTCTACGAA
196 GAGTCACCACCGATCCTTTATTAAGATGTGATCGGCTCACCTTAAAAATTATTTTAGTCTACGAA
36967008 TTTTGAGAAAACGAGTTCGGGAATCAGTTACGTACGAGGAA
261 TTTTGAGAAAACGAGTTCGGGAATCAGTTACGTACGAGGAA
36967049 GGGTTAGCAC
Statistics
Matches: 289, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
301 289 1.00
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.36
Consensus pattern (301 bp):
ATTGTTTGATCCTTGAAACATTATGAAAATTGTTTAATCATTGGAACATTTAACAGACTTTAAAC
ATTATACTTACATTAAATCAACAAATTGCATGTCTATTGTCACTCTTTTCTTTTACATACACTTG
ACATATATGTCGAAACCGTTTTTTTGAAAACAAAAATTTTATAGCCGACTTTAAAAATAAAACTG
GAGTCACCACCGATCCTTTATTAAGATGTGATCGGCTCACCTTAAAAATTATTTTAGTCTACGAA
TTTTGAGAAAACGAGTTCGGGAATCAGTTACGTACGAGGAA
Found at i:36967615 original size:14 final size:14
Alignment explanation
Indices: 36967586--36967631 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
36967576 AATTTACAAC
*
36967586 ATATACGAATAAAT
1 ATATACAAATAAAT
* *
36967600 ATTTACAAATATAT
1 ATATACAAATAAAT
36967614 ATATACAAATACAAT
1 ATATACAAATA-AAT
36967629 ATA
1 ATA
36967632 AGAGTAAAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 21 0.81
15 5 0.19
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.33
Consensus pattern (14 bp):
ATATACAAATAAAT
Found at i:36974236 original size:23 final size:23
Alignment explanation
Indices: 36974206--36974253 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
36974196 ATGATTTGAG
*
36974206 TATATTTTTTATACTATAATTGT
1 TATATTTTTTATACGATAATTGT
*
36974229 TATATTTTTTATACGGTAATTGT
1 TATATTTTTTATACGATAATTGT
36974252 TA
1 TA
36974254 ATTGAGTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.29, C:0.04, G:0.08, T:0.58
Consensus pattern (23 bp):
TATATTTTTTATACGATAATTGT
Found at i:36980285 original size:43 final size:42
Alignment explanation
Indices: 36980129--36980277 Score: 151
Period size: 42 Copynumber: 3.5 Consensus size: 42
36980119 TGTGATTTCG
*
36980129 TGTAAGACCACGTCTGGGACGATGGCATCGGTT-TGA-GATTTACA
1 TGTAAGACCACGTCTGGGACAATGGCATC--TTAT-ATGA-TTACA
* * * *
36980173 TGTAAGACCATGTCTGGGACATTGGCATCGTATATGATTACG
1 TGTAAGACCACGTCTGGGACAATGGCATCTTATATGATTACA
** *
36980215 TGTAAGACC-CTGTCTAAGACAATGGCATCATTATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACAATGGCATC-TTATATGATTACA
36980258 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCACGTCTGGGAC
36980278 GTTGGCATTA
Statistics
Matches: 86, Mismatches: 14, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
42 30 0.35
43 29 0.34
44 27 0.31
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACAATGGCATCTTATATGATTACA
Found at i:36983823 original size:124 final size:119
Alignment explanation
Indices: 36983693--36983991 Score: 384
Period size: 124 Copynumber: 2.5 Consensus size: 119
36983683 TCATACTCAA
* * *
36983693 TTTTTTCCTTTTATTTGTTGAATAATTGTACTAAAAGATTTTATCGTAGTTTTTCAATTTTTTCA
1 TTTTTTCC-TTTATTTGTTGAATGATTGTACCAAAAGATTCTATCGTAGTTTTTCAATTTTTTCA
* * * *
36983758 AATAATTCAAAACAAAATTTACACCGTTTACTTTAGCCCTTTACTTACATTTTACCC
65 AACAATT-AAAA-AAAATTTACACCATTTACTTTAGCCATTTACTTACATATTACCC
** * *
36983815 ATTTTTTTCCCTTTATTTGTTGAATGATTGTACCAAAAGATTCTATCACAATTTTCCAATTTTTT
1 --TTTTTT-CCTTTATTTGTTGAATGATTGTACCAAAAGATTCTATCGTAGTTTTTCAATTTTTT
** * * *
36983880 CAAACCCTTAAAAAAAATTTACACTATTTACTTTAGTCATTTCCTTACATATTACCC
63 CAAACAATTAAAAAAAATTTACACCATTTACTTTAGCCATTTACTTACATATTACCC
*
36983937 TTTTTT-CTGTATTTGTTGAATGATTGTACCAAAAGATTCTATCGTAGTTTTTCAA
1 TTTTTTCCTTTATTTGTTGAATGATTGTACCAAAAGATTCTATCGTAGTTTTTCAA
36983992 ACACTTCAAA
Statistics
Matches: 153, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
118 44 0.29
120 6 0.04
122 38 0.25
123 4 0.03
124 59 0.39
125 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.07, T:0.46
Consensus pattern (119 bp):
TTTTTTCCTTTATTTGTTGAATGATTGTACCAAAAGATTCTATCGTAGTTTTTCAATTTTTTCAA
ACAATTAAAAAAAATTTACACCATTTACTTTAGCCATTTACTTACATATTACCC
Found at i:36987040 original size:51 final size:51
Alignment explanation
Indices: 36986964--36987147 Score: 194
Period size: 51 Copynumber: 3.6 Consensus size: 51
36986954 GATGAACACG
*
36986964 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCAATAAATA-ATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTA-CAATAAATACTTGGTCACA
* * * * * **
36987015 TGTGTAATACTAAGTGAAGGCTACTATGTGTACTGA-AAATATTTGGTCATG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTAC-AATAAATACTTGGTCACA
* * ** *
36987066 TGTGTAGTTCTATGTGAAGGCTACTACGTGGACCGTAAA-ACTTGATCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACAATAAATACTTGGTCACA
* *
36987116 TGTGTAGTACTATGTGAAGACTACTATGTGTA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTA
36987148 TCGAATGATA
Statistics
Matches: 108, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
50 41 0.38
51 67 0.62
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.33
Consensus pattern (51 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTACAATAAATACTTGGTCACA
Found at i:36987044 original size:26 final size:26
Alignment explanation
Indices: 36986964--36987046 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
36986954 GATGAACACG
* *
36986964 TGTGTAGTACTATGTGAAGGCTACTA
1 TGTGTAATACTAAGTGAAGGCTACTA
* * *
36986990 CGTGT-ATCAATAAAT-AATGG-TCAC-A
1 TGTGTAAT-ACTAAGTGAA-GGCT-ACTA
36987015 TGTGTAATACTAAGTGAAGGCTACTA
1 TGTGTAATACTAAGTGAAGGCTACTA
36987041 TGTGTA
1 TGTGTA
36987047 CTGAAAATAT
Statistics
Matches: 42, Mismatches: 8, Indels: 14
0.66 0.12 0.22
Matches are distributed among these distances:
25 18 0.43
26 24 0.57
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.33
Consensus pattern (26 bp):
TGTGTAATACTAAGTGAAGGCTACTA
Found at i:36987143 original size:101 final size:102
Alignment explanation
Indices: 36986963--36987147 Score: 266
Period size: 101 Copynumber: 1.8 Consensus size: 102
36986953 CGATGAACAC
* *
36986963 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAATAAATAATGGTCACATGTGTAATACTAA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGGATCAATAAATAATGATCACATGTGTAATACTAA
*
36987028 GTGAAGGCTACTATGTGTACTGAAAATATTTGGTCAT
66 GTGAAGACTACTATGTGTACTGAAAATATTTGGTCAT
* ** * *
36987065 GTGTGTAGTTCTATGTGAAGGCTACTACGTGGA-CCGTAAA-ACTTGATCACATGTGTAGTACTA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGGATCAATAAATA-ATGATCACATGTGTAATACTA
*
36987128 TGTGAAGACTACTATGTGTA
65 AGTGAAGACTACTATGTGTA
36987148 TCGAATGATA
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
100 1 0.01
101 41 0.56
102 31 0.42
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (102 bp):
GTGTGTAGTACTATGTGAAGGCTACTACGTGGATCAATAAATAATGATCACATGTGTAATACTAA
GTGAAGACTACTATGTGTACTGAAAATATTTGGTCAT
Found at i:36990781 original size:9 final size:9
Alignment explanation
Indices: 36990767--36990803 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
36990757 TATAGTTTGA
36990767 TATTCGAAT
1 TATTCGAAT
36990776 TATTCGAAT
1 TATTCGAAT
*
36990785 TATTCGAGT
1 TATTCGAAT
36990794 TATTCGAAT
1 TATTCGAAT
36990803 T
1 T
36990804 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:36990874 original size:9 final size:9
Alignment explanation
Indices: 36990847--36990889 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
36990837 AAAAAAAAAT
*
36990847 TCGAGTTAAT
1 TCGA-TTAAC
*
36990857 TCGAATAAC
1 TCGATTAAC
36990866 TCGATTAAC
1 TCGATTAAC
*
36990875 TCGAATAAC
1 TCGATTAAC
36990884 TCGATT
1 TCGATT
36990890 TGTTTAACTC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
9 24 0.86
10 4 0.14
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.33
Consensus pattern (9 bp):
TCGATTAAC
Found at i:36990878 original size:18 final size:18
Alignment explanation
Indices: 36990847--36990889 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
36990837 AAAAAAAAAT
*
36990847 TCGAGTTAATTCGAATAAC
1 TCGA-TTAACTCGAATAAC
36990866 TCGATTAACTCGAATAAC
1 TCGATTAACTCGAATAAC
36990884 TCGATT
1 TCGATT
36990890 TGTTTAACTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.33
Consensus pattern (18 bp):
TCGATTAACTCGAATAAC
Found at i:36991279 original size:5 final size:5
Alignment explanation
Indices: 36991269--36991298 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
36991259 TTTGGATTCC
36991269 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
36991299 ACTAATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:36992069 original size:82 final size:82
Alignment explanation
Indices: 36991932--36992093 Score: 279
Period size: 82 Copynumber: 2.0 Consensus size: 82
36991922 TCACCCAAAT
* * *
36991932 GAGTATTGCTATTCAGTTGGTGCTTGTGCACACTACTTAGAGTGCTCGAGTATTTTTCATGTATT
1 GAGTACTGCTATTCACTTGGTGCTTGTGCACACTACTTAGAGTGCTCGAGTATTTTTCATGTATC
36991997 CGTTCATTGTTTCATTG
66 CGTTCATTGTTTCATTG
* *
36992014 GAGTACTGCTATTCACTTGGTGCTTGTGCACACTATTTAGAGTGTTCGAGTATTTTTCATGTATC
1 GAGTACTGCTATTCACTTGGTGCTTGTGCACACTACTTAGAGTGCTCGAGTATTTTTCATGTATC
36992079 CGTTCATTGTTTCAT
66 CGTTCATTGTTTCAT
36992094 GTTCGTTAAC
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
82 75 1.00
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.44
Consensus pattern (82 bp):
GAGTACTGCTATTCACTTGGTGCTTGTGCACACTACTTAGAGTGCTCGAGTATTTTTCATGTATC
CGTTCATTGTTTCATTG
Found at i:36997075 original size:25 final size:25
Alignment explanation
Indices: 36997041--36997093 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
36997031 GAACATGGAA
* *
36997041 GCTAAGAGCTGTTGATGGAGTATAG
1 GCTAAGAGCTGGTGACGGAGTATAG
36997066 GCTAAGAGCTGGTGACGGAGTATAG
1 GCTAAGAGCTGGTGACGGAGTATAG
36997091 GCT
1 GCT
36997094 TAGTATTCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.26, C:0.11, G:0.38, T:0.25
Consensus pattern (25 bp):
GCTAAGAGCTGGTGACGGAGTATAG
Found at i:37002353 original size:25 final size:24
Alignment explanation
Indices: 37002325--37002382 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
37002315 AGCTTCCCGA
*
37002325 TATTGGCTCATTTGAACCTTCCTAT
1 TATTGGCTCATATG-ACCTTCCTAT
* *
37002350 TATTGGCTCGTATGAGCTTCCTAT
1 TATTGGCTCATATGACCTTCCTAT
*
37002374 TAATGGCTC
1 TATTGGCTC
37002383 TCCGGAGCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 17 0.59
25 12 0.41
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.41
Consensus pattern (24 bp):
TATTGGCTCATATGACCTTCCTAT
Found at i:37002415 original size:25 final size:24
Alignment explanation
Indices: 37002361--37002424 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 24
37002351 ATTGGCTCGT
*
37002361 ATGAGCTTCCTA-TTAATGGCTCTC
1 ATGAGCTTCC-AGTTAATGGCTCAC
** *
37002385 CGGAGCTTCCGGTTACATGGCTCAC
1 ATGAGCTTCCAGTTA-ATGGCTCAC
37002410 ATGAGCTTCCAGTTA
1 ATGAGCTTCCAGTTA
37002425 TGTGGCTGAA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
24 11 0.35
25 20 0.65
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (24 bp):
ATGAGCTTCCAGTTAATGGCTCAC
Found at i:37004257 original size:30 final size:30
Alignment explanation
Indices: 37004205--37004268 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
37004195 TTAATTTTCG
* *
37004205 AGTTTTGGGGCAAAAGTGTAATTATGTAAA
1 AGTTTAGGGGCAAAAGTATAATTATGTAAA
* *
37004235 AGTTTAGGGGCAAAA-TAATAATTTTGTCAA
1 AGTTTAGGGGCAAAAGT-ATAATTATGTAAA
37004265 AGTT
1 AGTT
37004269 AGAGTCGAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 1 0.03
30 28 0.97
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.34
Consensus pattern (30 bp):
AGTTTAGGGGCAAAAGTATAATTATGTAAA
Found at i:37004685 original size:50 final size:50
Alignment explanation
Indices: 37004606--37004749 Score: 200
Period size: 50 Copynumber: 2.9 Consensus size: 50
37004596 CATTTGGGTA
* * *
37004606 AAGA-GTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCATCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGAT
* *
37004655 GAGAGGTCCCATGTAAGACCATGTCTGGGACGTGGCGTTGGCACCAAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGAT
** * *
37004705 AAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACC
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACC
37004750 TATATGAGAA
Statistics
Matches: 83, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
49 3 0.04
50 80 0.96
ACGTcount: A:0.25, C:0.23, G:0.32, T:0.20
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGAT
Found at i:37004771 original size:50 final size:50
Alignment explanation
Indices: 37004611--37004846 Score: 188
Period size: 50 Copynumber: 4.7 Consensus size: 50
37004601 GGGTAAAGAG
* * * * **
37004611 TCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCATCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAAC
* * * * **
37004661 TCCCATGTAAGACCATGTCTGGGACGTGGCGTTGGCACCAAGATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAAC
** * *
37004711 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAAC
* * * * * * * *
37004761 TCTCATGTAAGTCCATATCTAGGATATGGCATTGGCA-GTACAAGA-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAAC
* ** * *
37004809 ATCTCATGTAAGAATATGTCTGGGACATAGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
37004847 TGTTATATTC
Statistics
Matches: 151, Mismatches: 34, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
48 3 0.02
49 34 0.23
50 114 0.75
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAAC
Found at i:37004796 original size:100 final size:100
Alignment explanation
Indices: 37004617--37004797 Score: 227
Period size: 100 Copynumber: 1.8 Consensus size: 100
37004607 AGAGTCCCAT
* * * * ** * *
37004617 GTAAGACCATGTTTGGGACATGGCGTTGGCATCGAGATGAGAGGTCCCATGTAAGACCATGTCTG
1 GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCATGTAAGACCATATCTA
* *
37004682 GGACGTGGCGTTGGCACCAAGATAAGAGGTCCCCC
66 GGACATGGCATTGGCACCAAGATAAGAGGTCCCCC
* * * *
37004717 GTAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAGAACTCTCATGTAAGTCCATATCTA
1 GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCATGTAAGACCATATCTA
*
37004782 GGATATGGCATTGGCA
66 GGACATGGCATTGGCA
37004798 GTACAAGAAA
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
100 66 1.00
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (100 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCATGTAAGACCATATCTA
GGACATGGCATTGGCACCAAGATAAGAGGTCCCCC
Found at i:37009355 original size:20 final size:20
Alignment explanation
Indices: 37009326--37009364 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
37009316 ATATTTTCTG
*
37009326 GTAAATCATTTTACAGAAAA
1 GTAAAACATTTTACAGAAAA
*
37009346 GTAAAACATTTTCCAGAAA
1 GTAAAACATTTTACAGAAA
37009365 TCATTTTACG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.13, G:0.10, T:0.28
Consensus pattern (20 bp):
GTAAAACATTTTACAGAAAA
Found at i:37009371 original size:14 final size:14
Alignment explanation
Indices: 37009348--37009387 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
37009338 ACAGAAAAGT
*
37009348 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
37009362 AAATCATTTTACGG
1 AAAACATTTTACAG
37009376 AAAACATTTTAC
1 AAAACATTTTAC
37009388 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:37015202 original size:25 final size:25
Alignment explanation
Indices: 37015092--37015310 Score: 150
Period size: 25 Copynumber: 8.8 Consensus size: 25
37015082 ATATCACAGA
*
37015092 AAGCTCATGTGAGCCATGTAA-CGGTG
1 AAGCTCATGAGAGCCAT-TAATCGG-G
* * * *
37015118 -AGCTCATAAAAGACA-TAATCAGG
1 AAGCTCATGAGAGCCATTAATCGGG
* *
37015141 AAGCTCATGTGAGCCAAT-ATCGGG
1 AAGCTCATGAGAGCCATTAATCGGG
* * **
37015165 AAGATC-CGAAGAGCCATTAATTTGG
1 AAGCTCATG-AGAGCCATTAATCGGG
*
37015190 AAGCTCATGAGAGCCATTTATCGGG
1 AAGCTCATGAGAGCCATTAATCGGG
* *
37015215 AAGCTC-TGGAGAGCTAATT-ATCAGG
1 AAGCTCAT-GAGAGC-CATTAATCGGG
* *
37015240 AAGCTCAT-ACGAGCCA-TAAACGGA
1 AAGCTCATGA-GAGCCATTAATCGGG
*
37015264 AAGCTCAAGAGAGCCATTAATCGGG
1 AAGCTCATGAGAGCCATTAATCGGG
*
37015289 AAGCTCTTGAGAGCCATATAAT
1 AAGCTCATGAGAGCCAT-TAAT
37015311 GATATGCTCA
Statistics
Matches: 147, Mismatches: 32, Indels: 28
0.71 0.15 0.14
Matches are distributed among these distances:
23 6 0.04
24 49 0.33
25 83 0.56
26 9 0.06
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (25 bp):
AAGCTCATGAGAGCCATTAATCGGG
Found at i:37015218 original size:74 final size:73
Alignment explanation
Indices: 37015133--37015304 Score: 177
Period size: 74 Copynumber: 2.3 Consensus size: 73
37015123 ATAAAAGACA
* * * * **
37015133 TAATCAGGAAGCTCATGTGAGCCAA-TATCGGGAAGATCCGAAGAGCCATTAATTTGG-AAGCTC
1 TAATCGGGAAGCTC-TGAGAGCCAATTATCAGGAAGATCAGAAGAGCCA-TAA-ACGGAAAGCTC
*
37015196 ATGAGAGCCAT
63 AAGAGAGCCAT
* * * * *
37015207 TTATCGGGAAGCTCTGGAGAGCTAATTATCAGGAAGCTCATACGAGCCATAAACGGAAAGCTCAA
1 TAATCGGGAAGCTCT-GAGAGCCAATTATCAGGAAGATCAGAAGAGCCATAAACGGAAAGCTCAA
37015272 GAGAGCCAT
65 GAGAGCCAT
37015281 TAATCGGGAAGCTCTTGAGAGCCA
1 TAATCGGGAAGCTC-TGAGAGCCA
37015305 TATAATGATA
Statistics
Matches: 80, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
73 3 0.04
74 58 0.73
75 19 0.24
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (73 bp):
TAATCGGGAAGCTCTGAGAGCCAATTATCAGGAAGATCAGAAGAGCCATAAACGGAAAGCTCAAG
AGAGCCAT
Found at i:37023421 original size:3 final size:3
Alignment explanation
Indices: 37023413--37023464 Score: 63
Period size: 3 Copynumber: 17.7 Consensus size: 3
37023403 AATGCTACCT
* *
37023413 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTG TT- TTC TTC TCTA TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T-TC TTC
37023458 TT- TTC TT
1 TTC TTC TT
37023465 TTTTTTTCTT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
2 4 0.09
3 37 0.86
4 2 0.05
ACGTcount: A:0.02, C:0.27, G:0.02, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:37031901 original size:22 final size:22
Alignment explanation
Indices: 37031854--37031904 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
37031844 TAAAATAGTG
*
37031854 AAAAAAACAAGAAGAAAATAAT
1 AAAAAAACAAGAAGAAAATAAA
37031876 AAAAAAAC-AGCAA-AAAAGTAAA
1 AAAAAAACAAG-AAGAAAA-TAAA
37031898 AAAAAAA
1 AAAAAAA
37031905 GTAGGTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 6 0.23
22 20 0.77
ACGTcount: A:0.80, C:0.06, G:0.08, T:0.06
Consensus pattern (22 bp):
AAAAAAACAAGAAGAAAATAAA
Found at i:37042659 original size:21 final size:21
Alignment explanation
Indices: 37042635--37042678 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
37042625 GAAAAAGATA
37042635 CAATTTTTGAGTTTAACAAAG
1 CAATTTTTGAGTTTAACAAAG
*
37042656 CAATTTTTGAGTTTGACAAAG
1 CAATTTTTGAGTTTAACAAAG
37042677 CA
1 CA
37042679 TGTTTGGAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (21 bp):
CAATTTTTGAGTTTAACAAAG
Found at i:37055331 original size:16 final size:16
Alignment explanation
Indices: 37055307--37055343 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
37055297 GGTGTGACTT
*
37055307 TTAACACCAAACAAAA
1 TTAAGACCAAACAAAA
37055323 TTAAGACCAAACAAAA
1 TTAAGACCAAACAAAA
37055339 TTAAG
1 TTAAG
37055344 TCTATGTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.59, C:0.19, G:0.05, T:0.16
Consensus pattern (16 bp):
TTAAGACCAAACAAAA
Found at i:37055764 original size:25 final size:25
Alignment explanation
Indices: 37055709--37055766 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 25
37055699 ATATACAATT
*
37055709 TGTTAAACATGCATGGGGTGGGATA
1 TGTTAAACATGCATGGAGTGGGATA
37055734 --TT--ACATGCATGGAGTGGGATA
1 TGTTAAACATGCATGGAGTGGGATA
37055755 TGTTAAACATGC
1 TGTTAAACATGC
37055767 TTATGTGTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
21 18 0.64
23 4 0.14
25 6 0.21
ACGTcount: A:0.29, C:0.10, G:0.31, T:0.29
Consensus pattern (25 bp):
TGTTAAACATGCATGGAGTGGGATA
Found at i:37056865 original size:14 final size:14
Alignment explanation
Indices: 37056842--37056871 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
37056832 CATCCCTCCT
*
37056842 TCACATCTCTTCTC
1 TCACAACTCTTCTC
37056856 TCACAACTCTTCTC
1 TCACAACTCTTCTC
37056870 TC
1 TC
37056872 CTCTCTCACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.43, G:0.00, T:0.40
Consensus pattern (14 bp):
TCACAACTCTTCTC
Found at i:37061491 original size:29 final size:27
Alignment explanation
Indices: 37061453--37061507 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 27
37061443 GTGATTAAAT
37061453 AAAATCGACA-CAAGCAAAATTTAAAAGAA
1 AAAATCGACAGCAAG--AAA-TTAAAAGAA
*
37061482 AAAATTGACAGCAAGAAATTAAAAGA
1 AAAATCGACAGCAAGAAATTAAAAGA
37061508 TAAGTCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 8 0.33
28 3 0.12
29 9 0.38
30 4 0.17
ACGTcount: A:0.62, C:0.11, G:0.13, T:0.15
Consensus pattern (27 bp):
AAAATCGACAGCAAGAAATTAAAAGAA
Found at i:37063466 original size:21 final size:22
Alignment explanation
Indices: 37063437--37063487 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
37063427 TCTCTCTAGC
*
37063437 TTTCCTTTTCGCCTTTTTCA-T
1 TTTCATTTTCGCCTTTTTCACT
**
37063458 TTTCATTTTCTTCTTTTTCACT
1 TTTCATTTTCGCCTTTTTCACT
37063480 TTT-ATTTT
1 TTTCATTTT
37063488 TCTCTTCTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.08, C:0.22, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTCATTTTCGCCTTTTTCACT
Found at i:37063493 original size:21 final size:21
Alignment explanation
Indices: 37063449--37063509 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
37063439 TCCTTTTCGC
37063449 CTTTTTCATTTTCATTTTCTT
1 CTTTTTCATTTTCATTTTCTT
37063470 CTTTTTCACTTTT-ATTTT-TCT
1 CTTTTTCA-TTTTCATTTTCT-T
* * *
37063491 CTTCTTCTTTTTCTTTTTC
1 CTTTTTCATTTTCATTTTC
37063510 CTCACTTGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
20 5 0.15
21 24 0.73
22 4 0.12
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (21 bp):
CTTTTTCATTTTCATTTTCTT
Found at i:37068190 original size:89 final size:90
Alignment explanation
Indices: 37067989--37068193 Score: 220
Period size: 89 Copynumber: 2.3 Consensus size: 90
37067979 CGAAGTGATG
* * * * * * *
37067989 CCATACTATCTTTCAACTATAGTATTATTCATATCGGATTTAATGTCATAGTATCTTTCAACTAT
1 CCATAGTACCTTTCAACTATGGTCTTATTCATATCCGATTTAATGCCATAGTATCTTTAAACTAT
37068054 GGTCTTATACATTTATAGTATAATA
66 GGTCTTATACATTTATAGTATAATA
* * * *
37068079 CCTTAGTATCTTTTAACTATGGTCTTATTCAT-TCCGATTTAATGCCATAGTATCTTTAAACTGT
1 CCATAGTACCTTTCAACTATGGTCTTATTCATATCCGATTTAATGCCATAGTATCTTTAAACTAT
* * *
37068143 GGTCTT-TCTCATTTCA-GGTATAATT
66 GGTCTTAT-ACATTT-ATAGTATAATA
*
37068168 CCATCGTACCTTTCAA-TCATGGTCTT
1 CCATAGTACCTTTCAACT-ATGGTCTT
37068194 TCTCATTTCT
Statistics
Matches: 96, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
88 2 0.02
89 66 0.69
90 28 0.29
ACGTcount: A:0.27, C:0.19, G:0.11, T:0.44
Consensus pattern (90 bp):
CCATAGTACCTTTCAACTATGGTCTTATTCATATCCGATTTAATGCCATAGTATCTTTAAACTAT
GGTCTTATACATTTATAGTATAATA
Found at i:37069019 original size:27 final size:26
Alignment explanation
Indices: 37068973--37069023 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
37068963 TTTTCTTTTG
*
37068973 TTTATTTTATTTTATCTTAACTTAACT
1 TTTATTTTATTTAATCTTAA-TTAACT
37069000 TTTATTTTAATTTAAT-TTAATTAA
1 TTTATTTT-ATTTAATCTTAATTAA
37069024 AACACATAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 4 0.18
27 12 0.55
28 6 0.27
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (26 bp):
TTTATTTTATTTAATCTTAATTAACT
Found at i:37076269 original size:19 final size:18
Alignment explanation
Indices: 37076242--37076279 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
37076232 TTAAAACAAG
37076242 TTTTTTAAAATAAT-TTAT
1 TTTTTTAAAA-AATATTAT
37076260 TTTTTATAAAAAATATTAT
1 TTTTT-TAAAAAATATTAT
37076279 T
1 T
37076280 AAAATTTCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTTTTAAAAAATATTAT
Found at i:37078426 original size:19 final size:20
Alignment explanation
Indices: 37078402--37078505 Score: 79
Period size: 20 Copynumber: 5.3 Consensus size: 20
37078392 CACTTACATG
37078402 CCCCTGTTTGTACTT-GGTA
1 CCCCTGTTTGTACTTCGGTA
* *
37078421 CCCCTGATTGCACTTAC-GT-
1 CCCCTGTTTGTACTT-CGGTA
* *
37078440 GCCCTGTTTGTACTTCGATA
1 CCCCTGTTTGTACTTCGGTA
* * * ** *
37078460 CCCTTGATTGCACTTTTGTG
1 CCCCTGTTTGTACTTCGGTA
*
37078480 CCCCTGTTTGTACTTCAGTA
1 CCCCTGTTTGTACTTCGGTA
37078500 CCCCTG
1 CCCCTG
37078506 ATTGCACTTA
Statistics
Matches: 61, Mismatches: 20, Indels: 7
0.69 0.23 0.08
Matches are distributed among these distances:
18 1 0.02
19 26 0.43
20 34 0.56
ACGTcount: A:0.12, C:0.31, G:0.18, T:0.38
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:37078443 original size:39 final size:40
Alignment explanation
Indices: 37078388--37078516 Score: 190
Period size: 39 Copynumber: 3.3 Consensus size: 40
37078378 TTATTGAATA
*
37078388 ATTGCACTTACATGCCCCTGTTTGTACTT-GGTACCCCTG
1 ATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCCTG
* *
37078427 ATTGCACTTACGTG-CCCTGTTTGTACTTCGATACCCTTG
1 ATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCCTG
** *
37078466 ATTGCACTTTTGTGCCCCTGTTTGTACTTCAGTACCCCTG
1 ATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCCTG
37078506 ATTGCACTTAC
1 ATTGCACTTAC
37078517 ATACTTCGAA
Statistics
Matches: 78, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
38 14 0.18
39 33 0.42
40 31 0.40
ACGTcount: A:0.16, C:0.29, G:0.17, T:0.38
Consensus pattern (40 bp):
ATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCCTG
Found at i:37079020 original size:13 final size:13
Alignment explanation
Indices: 37079002--37079026 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37078992 TTGATATGAT
37079002 ATGTTTGGATGTA
1 ATGTTTGGATGTA
37079015 ATGTTTGGATGT
1 ATGTTTGGATGT
37079027 TAATTGTGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.48
Consensus pattern (13 bp):
ATGTTTGGATGTA
Found at i:37080814 original size:22 final size:22
Alignment explanation
Indices: 37080786--37080854 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
37080776 CGAACTCTAG
37080786 GTTACATGCAAACCCTATATAT
1 GTTACATGCAAACCCTATATAT
** **
37080808 GTTACATGTGAATTCTATACATAT
1 GTTACATGCAAACCCTAT--ATAT
* *
37080832 GTTATATACAAACCCTATATAT
1 GTTACATGCAAACCCTATATAT
37080854 G
1 G
37080855 ATATATGCGA
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
22 19 0.54
24 16 0.46
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.36
Consensus pattern (22 bp):
GTTACATGCAAACCCTATATAT
Found at i:37080867 original size:22 final size:22
Alignment explanation
Indices: 37080786--37080867 Score: 65
Period size: 22 Copynumber: 3.6 Consensus size: 22
37080776 CGAACTCTAG
*
37080786 GTTACATGCAAACCCTATATAT
1 GTTATATGCAAACCCTATATAT
* ** **
37080808 GTTACATGTGAATTCTATACATAT
1 GTTATATGCAAACCCTAT--ATAT
*
37080832 GTTATATACAAACCCTATATAT
1 GTTATATGCAAACCCTATATAT
* *
37080854 GATATATGCGAACC
1 GTTATATGCAAACC
37080868 ATCATACATG
Statistics
Matches: 45, Mismatches: 13, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
22 29 0.64
24 16 0.36
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (22 bp):
GTTATATGCAAACCCTATATAT
Found at i:37096131 original size:7 final size:7
Alignment explanation
Indices: 37096113--37096155 Score: 59
Period size: 7 Copynumber: 6.1 Consensus size: 7
37096103 TTTATAATTA
*
37096113 TTTTACT
1 TTTTATT
*
37096120 TTTAATT
1 TTTTATT
*
37096127 TTTAATT
1 TTTTATT
37096134 TTTTATT
1 TTTTATT
37096141 TTTTATT
1 TTTTATT
37096148 TTTTATT
1 TTTTATT
37096155 T
1 T
37096156 AATAACTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTTATT
Found at i:37096151 original size:22 final size:22
Alignment explanation
Indices: 37096101--37096152 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
37096091 TTATGCTCCC
*
37096101 ATTTTATAATTATTTTACTTTT
1 ATTTTTTAATTATTTTACTTTT
* *
37096123 AATTTTTAATT-TTTTATTTTTT
1 ATTTTTTAATTATTTTA-CTTTT
37096145 ATTTTTTA
1 ATTTTTTA
37096153 TTTAATAACT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 5 0.20
22 20 0.80
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (22 bp):
ATTTTTTAATTATTTTACTTTT
Found at i:37099909 original size:23 final size:22
Alignment explanation
Indices: 37099883--37099955 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 22
37099873 CTATATGACT
*
37099883 TTTGTGGCATAATCTGAATGGCC
1 TTTGTGGCATAATCTG-TTGGCC
* * *
37099906 TTTGTGGCACATTCTGTTTAGCC
1 TTTGTGGCATAATCTG-TTGGCC
37099929 TTTGTGGC-TAATTCTGTTGGCC
1 TTTGTGGCATAA-TCTGTTGGCC
37099951 TTTGT
1 TTTGT
37099956 AGAGTACTTT
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
22 11 0.27
23 30 0.73
ACGTcount: A:0.14, C:0.18, G:0.25, T:0.44
Consensus pattern (22 bp):
TTTGTGGCATAATCTGTTGGCC
Found at i:37108766 original size:27 final size:27
Alignment explanation
Indices: 37108733--37108788 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
37108723 TATTCGGAGA
37108733 ATGAATATTATCCCAAAGAGATTAAGG
1 ATGAATATTATCCCAAAGAGATTAAGG
37108760 ATGAATATTATCCCAAAGAGATTAAGG
1 ATGAATATTATCCCAAAGAGATTAAGG
37108787 AT
1 AT
37108789 ATCATATGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.45, C:0.11, G:0.18, T:0.27
Consensus pattern (27 bp):
ATGAATATTATCCCAAAGAGATTAAGG
Found at i:37109171 original size:57 final size:56
Alignment explanation
Indices: 37109064--37109239 Score: 192
Period size: 57 Copynumber: 3.1 Consensus size: 56
37109054 ATAGAAATGG
* *
37109064 TGAAAATTGAGAAATAGGGAATCATTTGGAAATTATTATGGTTTTCTCCAAAATAAAAA
1 TGAAAATAGAGAAAT--GGAATCATTT-GAAATGATTATGGTTTTCTCCAAAATAAAAA
* * * * *
37109123 TGAAAATGGAGAAATGGAAACATTTAGAAATGATTA-GGATTTTGTCCAAAATGATAA
1 TGAAAATAGAGAAATGGAATCATTT-GAAATGATTATGG-TTTTCTCCAAAATAAAAA
* * * *
37109180 TGAAAATAGAGAAATGGAATCATTTGAAAATGAATGTGGTTTTCTACAAAATGAAAA
1 TGAAAATAGAGAAATGGAATCATTTG-AAATGATTATGGTTTTCTCCAAAATAAAAA
37109237 TGA
1 TGA
37109240 CCTGAAAATT
Statistics
Matches: 100, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
56 3 0.03
57 81 0.81
58 2 0.02
59 14 0.14
ACGTcount: A:0.45, C:0.06, G:0.19, T:0.30
Consensus pattern (56 bp):
TGAAAATAGAGAAATGGAATCATTTGAAATGATTATGGTTTTCTCCAAAATAAAAA
Found at i:37124481 original size:25 final size:25
Alignment explanation
Indices: 37124451--37124541 Score: 64
Period size: 24 Copynumber: 3.7 Consensus size: 25
37124441 AATTTTGCTA
37124451 TAAATAAAATTTTAAAAAATAAATT
1 TAAATAAAATTTTAAAAAATAAATT
* * * *
37124476 TAAATATATTTTTATAAAATTTAA-T
1 TAAATAAAATTTTA-AAAAATAAATT
* *
37124501 T-AATTAAATTATT-TAAAA-AAATT
1 TAAATAAAATT-TTAAAAAATAAATT
* *
37124524 GAAATAAAAATTTAAAAA
1 TAAATAAAATTTTAAAAA
37124542 TTTTAACATA
Statistics
Matches: 47, Mismatches: 14, Indels: 11
0.65 0.19 0.15
Matches are distributed among these distances:
22 2 0.04
23 6 0.13
24 16 0.34
25 16 0.34
26 7 0.15
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (25 bp):
TAAATAAAATTTTAAAAAATAAATT
Found at i:37125724 original size:66 final size:66
Alignment explanation
Indices: 37125620--37125749 Score: 215
Period size: 66 Copynumber: 2.0 Consensus size: 66
37125610 CGTTTATTTA
* *
37125620 TTTTATTTTTTAAATATTAATTAATGATATATGACGATTTCTTAGCTTCACCTATTAAATAATTA
1 TTTTATTTTTTAAATATCAATTAATGATATATGACGATTTCTTAGCTTCACCTATCAAATAATTA
37125685 T
66 T
* * *
37125686 TTTTATTTTTTAAATATCAATTAATGATATATGTCGATTTTTTAGCTTCACCTCTCAAATAATT
1 TTTTATTTTTTAAATATCAATTAATGATATATGACGATTTCTTAGCTTCACCTATCAAATAATT
37125750 GTCAACTTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.33, C:0.11, G:0.06, T:0.50
Consensus pattern (66 bp):
TTTTATTTTTTAAATATCAATTAATGATATATGACGATTTCTTAGCTTCACCTATCAAATAATTA
T
Found at i:37125726 original size:32 final size:32
Alignment explanation
Indices: 37125624--37125729 Score: 81
Period size: 32 Copynumber: 3.2 Consensus size: 32
37125614 TATTTATTTT
* *
37125624 ATTTTTTAAATATTAATTAATGATATATGACG
1 ATTTTTTAAATATCAATTAATGATATATGTCG
* ** * * **
37125656 ATTTCTTAGCT-TCACCTATTAAATAAT-TATTTTT
1 ATTTTTTAAATATCA---ATT-AATGATATATGTCG
37125690 ATTTTTTAAATATCAATTAATGATATATGTCG
1 ATTTTTTAAATATCAATTAATGATATATGTCG
37125722 ATTTTTTA
1 ATTTTTTA
37125730 GCTTCACCTC
Statistics
Matches: 52, Mismatches: 16, Indels: 12
0.65 0.20 0.15
Matches are distributed among these distances:
31 7 0.13
32 23 0.44
34 14 0.27
35 8 0.15
ACGTcount: A:0.35, C:0.08, G:0.07, T:0.51
Consensus pattern (32 bp):
ATTTTTTAAATATCAATTAATGATATATGTCG
Found at i:37139721 original size:39 final size:40
Alignment explanation
Indices: 37139622--37139727 Score: 142
Period size: 40 Copynumber: 2.7 Consensus size: 40
37139612 AAAATACAGG
* * * * *
37139622 TAAAAATCGAGCATTAGTGGCGCTTTATGGAAATCGCCGC
1 TAAAAATCGAGCATTAGCGGCGTTTTTTGAAAAACGCCGC
*
37139662 TAAAGATCGAGCATTAGCGGCGTTTTTTGAAAAACGCCGC
1 TAAAAATCGAGCATTAGCGGCGTTTTTTGAAAAACGCCGC
*
37139702 TAAAAAT-GAGCATTCGCGGCGTTTTT
1 TAAAAATCGAGCATTAGCGGCGTTTTT
37139728 CAAAAAAATG
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 18 0.31
40 40 0.69
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (40 bp):
TAAAAATCGAGCATTAGCGGCGTTTTTTGAAAAACGCCGC
Found at i:37139746 original size:39 final size:39
Alignment explanation
Indices: 37139656--37139735 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 39
37139646 TTATGGAAAT
* **
37139656 CGCCGCTAAAGATCGAGCATTAGCGGCGTTTTTTGAAAAA
1 CGCCGCTAAAAAT-GAGCATTAGCGGCGTTTTTAAAAAAA
*
37139696 CGCCGCTAAAAATGAGCATTCGCGGCGTTTTTCAAAAAAA
1 CGCCGCTAAAAATGAGCATTAGCGGCGTTTTT-AAAAAAA
37139736 TGCTGCAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 18 0.51
40 17 0.49
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.24
Consensus pattern (39 bp):
CGCCGCTAAAAATGAGCATTAGCGGCGTTTTTAAAAAAA
Found at i:37139840 original size:41 final size:41
Alignment explanation
Indices: 37139783--37140094 Score: 430
Period size: 41 Copynumber: 7.6 Consensus size: 41
37139773 GACCTTTTGC
*
37139783 TTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTCGGGGT
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGT
* * * *
37139824 TTTAGCAGCATTTTTGAAAAGGCGCAGCTAATGCTCGGGGT
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGT
*
37139865 TTTAGCGGCGTTTTTGAAAAGGCGCCGCTAATGCTCGGGGT
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGT
* * * *
37139906 TTTAGCAGTGTTTTTGAAAAGGCGCCGCTAATGCTCGGGGC
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGT
* *
37139947 TTTAGCGGCGTTTTTGAAAAAGTGCCGCTAATGCTTGGGGT
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGT
* * * * *
37139988 TTTAACGGTGTTTTTGAAAAAGCGTCG-TGAATGATCGGTGT
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCT-AATGCTCGGGGT
* *
37140029 TTTTGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGC
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGT
37140070 TTTAGCGGCGTTTTTG-AAAAGCGCC
1 TTTAGCGGCGTTTTTGAAAAAGCGCC
37140095 ACAAAAAATA
Statistics
Matches: 239, Mismatches: 30, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
40 10 0.04
41 228 0.95
42 1 0.00
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.31
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGT
Found at i:37142728 original size:20 final size:21
Alignment explanation
Indices: 37142703--37142741 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
37142693 TGAAGCAGAC
37142703 ATTTAGAA-TGAAAATGAGTT
1 ATTTAGAACTGAAAATGAGTT
*
37142723 ATTTAGAACTGAAATTGAG
1 ATTTAGAACTGAAAATGAG
37142742 AAGTTTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.33
Consensus pattern (21 bp):
ATTTAGAACTGAAAATGAGTT
Found at i:37145275 original size:57 final size:57
Alignment explanation
Indices: 37145211--37145322 Score: 215
Period size: 57 Copynumber: 2.0 Consensus size: 57
37145201 AGAGATGCTA
37145211 TAGCTTCTAGTTTAATGAATTCACTTTAAATTGTAAATGCTATTGTAAAATTTTTGG
1 TAGCTTCTAGTTTAATGAATTCACTTTAAATTGTAAATGCTATTGTAAAATTTTTGG
*
37145268 TAGCTTCTAGTTTAATGAATTCACTTTAAATTGTAAATGTTATTGTAAAATTTTT
1 TAGCTTCTAGTTTAATGAATTCACTTTAAATTGTAAATGCTATTGTAAAATTTTT
37145323 AGTATTTATA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.47
Consensus pattern (57 bp):
TAGCTTCTAGTTTAATGAATTCACTTTAAATTGTAAATGCTATTGTAAAATTTTTGG
Found at i:37145637 original size:24 final size:24
Alignment explanation
Indices: 37145604--37145650 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
37145594 TTCTAATTAA
* *
37145604 ATTTATAAATAATTAATATTAATT
1 ATTTAGAAATAATTAAAATTAATT
*
37145628 ATTTAGAAATATTTAAAATTAAT
1 ATTTAGAAATAATTAAAATTAAT
37145651 ATTATATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (24 bp):
ATTTAGAAATAATTAAAATTAATT
Found at i:37147427 original size:16 final size:17
Alignment explanation
Indices: 37147400--37147432 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
37147390 TCTACATCAC
*
37147400 TAGTTGAAGAAACTAAA
1 TAGTTGAAGAAAATAAA
37147417 TAGTT-AAGAAAATAAA
1 TAGTTGAAGAAAATAAA
37147433 ACAGTAAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.58, C:0.03, G:0.15, T:0.24
Consensus pattern (17 bp):
TAGTTGAAGAAAATAAA
Found at i:37150966 original size:23 final size:23
Alignment explanation
Indices: 37150940--37151038 Score: 144
Period size: 23 Copynumber: 4.3 Consensus size: 23
37150930 ATAAGTGCCA
37150940 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
37150963 CACTGTTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* ** *
37150986 CACTGAAATGTAGTTGGAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
37151009 CACTGATATGTAGTCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
37151032 CACTGAT
1 CACTGAT
37151039 CAATAACACT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 67 1.00
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.25
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:37152452 original size:25 final size:25
Alignment explanation
Indices: 37152424--37152477 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
37152414 GCCATATCGA
*
37152424 GAAGCTCCAAGGA-TCCATTAATCAG
1 GAAGCTCCAAAGAGT-CATTAATCAG
*
37152449 GAAGCTCCAAAGAGTTATTAATCAG
1 GAAGCTCCAAAGAGTCATTAATCAG
37152474 GAAG
1 GAAG
37152478 TTCACGAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 25 0.96
26 1 0.04
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.20
Consensus pattern (25 bp):
GAAGCTCCAAAGAGTCATTAATCAG
Found at i:37152591 original size:24 final size:24
Alignment explanation
Indices: 37152564--37152635 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 24
37152554 GGGATGCTTT
37152564 GAAGAGCTATTAATGGGAAGCTCA
1 GAAGAGCTATTAATGGGAAGCTCA
* *
37152588 GAAGAACCATATAATGGGAAGCTCA
1 GAAGAGCTAT-TAATGGGAAGCTCA
* * *
37152613 AAAGGGCTATTAATGGGACGCTC
1 GAAGAGCTATTAATGGGAAGCTC
37152636 TTTTGAGCTA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
24 20 0.50
25 20 0.50
ACGTcount: A:0.38, C:0.15, G:0.28, T:0.19
Consensus pattern (24 bp):
GAAGAGCTATTAATGGGAAGCTCA
Found at i:37156219 original size:24 final size:24
Alignment explanation
Indices: 37156155--37156220 Score: 89
Period size: 23 Copynumber: 2.8 Consensus size: 24
37156145 GATACGGACC
* * *
37156155 TTTCATTACTATCCTGTTCGACCT
1 TTTCATTAATATCCTTTTCGAACT
*
37156179 TTTCATT-ATATCTTTTTCGAACT
1 TTTCATTAATATCCTTTTCGAACT
37156202 TTTCATTAATATCCTTTTC
1 TTTCATTAATATCCTTTTC
37156221 AGATACATCT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
23 19 0.53
24 17 0.47
ACGTcount: A:0.20, C:0.23, G:0.05, T:0.53
Consensus pattern (24 bp):
TTTCATTAATATCCTTTTCGAACT
Found at i:37156266 original size:40 final size:40
Alignment explanation
Indices: 37156192--37156326 Score: 211
Period size: 40 Copynumber: 3.4 Consensus size: 40
37156182 CATTATATCT
* *
37156192 TTTTCGAA-CTTTTCA-TTAATATCCTTTTCAGATACATCT
1 TTTTC-AACCTTTTCATTTGATATCCTTTTCAGATACATCC
*
37156231 TTTTCAACCTTTTCATTTGATATCCTTTTCGGATACATCC
1 TTTTCAACCTTTTCATTTGATATCCTTTTCAGATACATCC
*
37156271 TTTTCAACCTTTTCATTTGATATCCTTTTCATATACATCC
1 TTTTCAACCTTTTCATTTGATATCCTTTTCAGATACATCC
37156311 TTTTCAACCTTTTCAT
1 TTTTCAACCTTTTCAT
37156327 GGATTCGTAA
Statistics
Matches: 89, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
38 2 0.02
39 12 0.13
40 75 0.84
ACGTcount: A:0.22, C:0.24, G:0.04, T:0.50
Consensus pattern (40 bp):
TTTTCAACCTTTTCATTTGATATCCTTTTCAGATACATCC
Found at i:37156312 original size:15 final size:16
Alignment explanation
Indices: 37156278--37156316 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
37156268 TCCTTTTCAA
* *
37156278 CCTTTTCATTTGATAT
1 CCTTTTCATATGACAT
37156294 CCTTTTCATAT-ACAT
1 CCTTTTCATATGACAT
37156309 CCTTTTCA
1 CCTTTTCA
37156317 ACCTTTTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.21, C:0.26, G:0.03, T:0.51
Consensus pattern (16 bp):
CCTTTTCATATGACAT
Found at i:37160853 original size:21 final size:18
Alignment explanation
Indices: 37160821--37160860 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
37160811 ATTTATATGC
37160821 ATAATGGAATAATAAACATG
1 ATAATGGAATAA-AAA-ATG
37160841 ATAATGTGAATAAAAAATG
1 ATAATG-GAATAAAAAATG
37160860 A
1 A
37160861 ACAAAAACGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 9 0.47
21 6 0.32
ACGTcount: A:0.57, C:0.03, G:0.15, T:0.25
Consensus pattern (18 bp):
ATAATGGAATAAAAAATG
Found at i:37162537 original size:26 final size:26
Alignment explanation
Indices: 37162491--37162541 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
37162481 ACCCTAGTTT
* *
37162491 GGCTATTGTTTTTTTTTGGCCTGTTG
1 GGCTATTGTTTTATTTGGGCCTGTTG
37162517 GGCTATT-TTTTAATTTGGGCCTGTT
1 GGCTATTGTTTT-ATTTGGGCCTGTT
37162542 TGGGTTAGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.08, C:0.12, G:0.25, T:0.55
Consensus pattern (26 bp):
GGCTATTGTTTTATTTGGGCCTGTTG
Found at i:37162696 original size:25 final size:26
Alignment explanation
Indices: 37162661--37162725 Score: 105
Period size: 25 Copynumber: 2.5 Consensus size: 26
37162651 CACATCATTG
*
37162661 CTTACATGAGCTGTGAAATGGG-CTA
1 CTTACAAGAGCTGTGAAATGGGCCTA
37162686 CTTACAAGAGCTGTGAAATGGGCCTA
1 CTTACAAGAGCTGTGAAATGGGCCTA
*
37162712 CTTACACGAGCTGT
1 CTTACAAGAGCTGT
37162726 AGGTCAGAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
25 21 0.57
26 16 0.43
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACAAGAGCTGTGAAATGGGCCTA
Found at i:37178723 original size:9 final size:9
Alignment explanation
Indices: 37178706--37178742 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
37178696 TGAGTTTTCG
37178706 AATTCGAAT
1 AATTCGAAT
*
37178715 AACTCGAAT
1 AATTCGAAT
37178724 AATTCGAAT
1 AATTCGAAT
37178733 AATTCGAAT
1 AATTCGAAT
37178742 A
1 A
37178743 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:37178818 original size:30 final size:30
Alignment explanation
Indices: 37178784--37178845 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
37178774 AACTCCCAAA
* * *
37178784 CCTTTTTACTTTTCCCTCAAAACTTTTACT
1 CCTTTCTACTTTCCCCCCAAAACTTTTACT
37178814 CCTTTCTACTTTCCCCCCAAAACTTTTACT
1 CCTTTCTACTTTCCCCCCAAAACTTTTACT
37178844 CC
1 CC
37178846 CCTCCCCTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.19, C:0.37, G:0.00, T:0.44
Consensus pattern (30 bp):
CCTTTCTACTTTCCCCCCAAAACTTTTACT
Found at i:37178990 original size:30 final size:31
Alignment explanation
Indices: 37178956--37179015 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
37178946 AAATCTTTTA
*
37178956 TTTT-CCCTCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCT-AAAACTTTTACTCCCTTCCCAC
*
37178986 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCTAAAACTTTTACTCCCTTCCCA
37179016 TCTCACCTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 17 0.65
31 9 0.35
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.42
Consensus pattern (31 bp):
TTTTCCCCTAAAACTTTTACTCCCTTCCCAC
Found at i:37180170 original size:18 final size:18
Alignment explanation
Indices: 37180136--37180172 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
37180126 CCTTAAATGT
* *
37180136 TTTAAAATCCTAGAAGGA
1 TTTAAAATCCCAAAAGGA
37180154 TTTAAAATCCCAAAAGGA
1 TTTAAAATCCCAAAAGGA
37180172 T
1 T
37180173 ATAGAGTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.27
Consensus pattern (18 bp):
TTTAAAATCCCAAAAGGA
Found at i:37182129 original size:18 final size:19
Alignment explanation
Indices: 37182108--37182144 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
37182098 GTAATTGAAC
37182108 TTGAAAATT-GGCTTGAGA
1 TTGAAAATTAGGCTTGAGA
37182126 TTGAAAATTAGGCTTGAGA
1 TTGAAAATTAGGCTTGAGA
37182145 ACCCAAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.32
Consensus pattern (19 bp):
TTGAAAATTAGGCTTGAGA
Found at i:37185834 original size:35 final size:34
Alignment explanation
Indices: 37185743--37186011 Score: 325
Period size: 35 Copynumber: 7.9 Consensus size: 34
37185733 GTCCAAAAAG
* * *
37185743 AAATAATACATGAACAGGAGAGATTCCCTGCAA-G
1 AAATAAT-CGTGAACAGGAAAGATTCCCTGCAACA
*
37185777 AAATGAT-GTGAACAGGAAAGATTCCCTGCAACA
1 AAATAATCGTGAACAGGAAAGATTCCCTGCAACA
* *
37185810 AAATAATCCGTGAACAGGAGAGATTCCCTGCAA-G
1 AAATAAT-CGTGAACAGGAAAGATTCCCTGCAACA
*
37185844 AAATGAT-GTGAACAGGAAAGATTCCCTGCAACA
1 AAATAATCGTGAACAGGAAAGATTCCCTGCAACA
* *
37185877 AAATAATGTGTGAACAGGAGAGATTCCCTGCAACA
1 AAATAAT-CGTGAACAGGAAAGATTCCCTGCAACA
* *
37185912 AAATAATGCGTGAACAGGAGAGATTCCCTGCAA-G
1 AAATAAT-CGTGAACAGGAAAGATTCCCTGCAACA
*
37185946 AAATGAT-GTGAACAGGAAAGATTCCCTGCAACA
1 AAATAATCGTGAACAGGAAAGATTCCCTGCAACA
* *
37185979 GAATAATGCGTGAACAGGAAATATTCCCTGCAA
1 AAATAAT-CGTGAACAGGAAAGATTCCCTGCAA
37186012 GGAAAGACAA
Statistics
Matches: 206, Mismatches: 20, Indels: 17
0.85 0.08 0.07
Matches are distributed among these distances:
32 68 0.33
33 17 0.08
34 18 0.09
35 103 0.50
ACGTcount: A:0.41, C:0.18, G:0.22, T:0.19
Consensus pattern (34 bp):
AAATAATCGTGAACAGGAAAGATTCCCTGCAACA
Found at i:37185851 original size:67 final size:67
Alignment explanation
Indices: 37185743--37186011 Score: 348
Period size: 67 Copynumber: 4.0 Consensus size: 67
37185733 GTCCAAAAAG
* *
37185743 AAATAATACATGAACAGGAGAGATTCCCTGCAAGAAATGAT-GTGAACAGGAAAGATTCCCTGCA
1 AAATAAT-CGTGAACAGGAGAGATTCCCTGCAAGAAATAATCGTGAACAGGAAAGATTCCCTGCA
37185807 ACA
65 ACA
*
37185810 AAATAATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGAT-GTGAACAGGAAAGATTCCCTGCA
1 AAATAAT-CGTGAACAGGAGAGATTCCCTGCAAGAAATAATCGTGAACAGGAAAGATTCCCTGCA
37185874 ACA
65 ACA
* * *
37185877 AAATAATGTGTGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTG
1 AAATAAT-CGTGAACAGGAGAGATTCCCTGCAA-GAAATAAT-CGTGAACAGGAAAGATTCCCTG
*
37185942 CAA-G
63 CAACA
* * * *
37185946 AAATGAT-GTGAACAGGAAAGATTCCCTGCAACAGAATAATGCGTGAACAGGAAATATTCCCTGC
1 AAATAATCGTGAACAGGAGAGATTCCCTGCAAGA-AATAAT-CGTGAACAGGAAAGATTCCCTGC
37186010 AA
64 AA
37186012 GGAAAGACAA
Statistics
Matches: 185, Mismatches: 13, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
66 1 0.01
67 149 0.81
68 6 0.03
69 6 0.03
70 23 0.12
ACGTcount: A:0.41, C:0.18, G:0.22, T:0.19
Consensus pattern (67 bp):
AAATAATCGTGAACAGGAGAGATTCCCTGCAAGAAATAATCGTGAACAGGAAAGATTCCCTGCAA
CA
Found at i:37185926 original size:102 final size:102
Alignment explanation
Indices: 37185753--37186011 Score: 425
Period size: 102 Copynumber: 2.6 Consensus size: 102
37185743 AAATAATACA
* * *
37185753 TGAACAGGAGAGATTCCCTGCAA-GAAATGA--TGTGAACAGGAAAGATTCCCTGCAACAAAATA
1 TGAACAGGAAAGATTCCCTGCAACAAAATAATGTGTGAACAGGAAAGATTCCCTGCAACAAAATA
37185815 ATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
66 ATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
*
37185852 TGAACAGGAAAGATTCCCTGCAACAAAATAATGTGTGAACAGGAGAGATTCCCTGCAACAAAATA
1 TGAACAGGAAAGATTCCCTGCAACAAAATAATGTGTGAACAGGAAAGATTCCCTGCAACAAAATA
*
37185917 ATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
66 ATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
* * *
37185954 TGAACAGGAAAGATTCCCTGCAACAGAATAATGCGTGAACAGGAAATATTCCCTGCAA
1 TGAACAGGAAAGATTCCCTGCAACAAAATAATGTGTGAACAGGAAAGATTCCCTGCAA
37186012 GGAAAGACAA
Statistics
Matches: 148, Mismatches: 9, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
99 22 0.15
100 5 0.03
102 121 0.82
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.19
Consensus pattern (102 bp):
TGAACAGGAAAGATTCCCTGCAACAAAATAATGTGTGAACAGGAAAGATTCCCTGCAACAAAATA
ATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
Found at i:37186326 original size:13 final size:13
Alignment explanation
Indices: 37186310--37186343 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
37186300 TGCATTTACA
37186310 AAATTAAGTTTTC
1 AAATTAAGTTTTC
37186323 AAATTAAGTTTTC
1 AAATTAAGTTTTC
37186336 AAACTTAA
1 AAA-TTAA
37186344 ACTATTTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (13 bp):
AAATTAAGTTTTC
Found at i:37186454 original size:14 final size:13
Alignment explanation
Indices: 37186419--37186452 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
37186409 AGAAAATAGT
37186419 TTAAGTTTGAAAAC
1 TTAA-TTTGAAAAC
37186433 TTAATTTGAAAAC
1 TTAATTTGAAAAC
37186446 TTAATTT
1 TTAATTT
37186453 TGTAAATGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (13 bp):
TTAATTTGAAAAC
Found at i:37197725 original size:21 final size:21
Alignment explanation
Indices: 37197692--37197735 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
37197682 AGGAAATGTC
*
37197692 TAATTTTTCAATTTGTTTTGTT
1 TAATTTTTCAATTTATTTT-TT
37197714 TAATTTTT-AATTTATTTTTT
1 TAATTTTTCAATTTATTTTTT
37197734 TA
1 TA
37197736 TTATGCCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 9 0.43
22 8 0.38
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.70
Consensus pattern (21 bp):
TAATTTTTCAATTTATTTTTT
Found at i:37198481 original size:18 final size:18
Alignment explanation
Indices: 37198448--37198482 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37198438 TCATTCACTT
*
37198448 TTCTTCTTTCTCTTTTCC
1 TTCTTCTTGCTCTTTTCC
*
37198466 TTCTTCTTGCTTTTTTC
1 TTCTTCTTGCTCTTTTC
37198483 ATCCTACTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.00, C:0.29, G:0.03, T:0.69
Consensus pattern (18 bp):
TTCTTCTTGCTCTTTTCC
Found at i:37217766 original size:22 final size:21
Alignment explanation
Indices: 37217723--37217769 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
37217713 AAATATTGCA
*
37217723 CCCTATAAAGAGGTATCACAC
1 CCCTATAAAGAGGTAACACAC
* *
37217744 CCCTAATAAAGAGTTAACGCAC
1 CCCT-ATAAAGAGGTAACACAC
37217766 CCCT
1 CCCT
37217770 CCCAGCTAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.36, C:0.32, G:0.13, T:0.19
Consensus pattern (21 bp):
CCCTATAAAGAGGTAACACAC
Found at i:37219394 original size:34 final size:33
Alignment explanation
Indices: 37219355--37219461 Score: 117
Period size: 34 Copynumber: 3.2 Consensus size: 33
37219345 AATTTTTTTA
*
37219355 AAAATTAATTAAATTAGGTTTTAGGGGTTTTAAG
1 AAAATTAATTAAATTAGG-TTTAGGAGTTTTAAG
* ** *
37219389 TAAATTAATTAAATTAAGGTTTACTATTTTTAAG
1 AAAATTAATTAAATT-AGGTTTAGGAGTTTTAAG
* *
37219423 AAAATTAATTAAATTAGGGTTTAGGA-TTTAAAA
1 AAAATTAATTAAATTA-GGTTTAGGAGTTTTAAG
37219456 AAAATT
1 AAAATT
37219462 GTGTTTAGAT
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
33 12 0.20
34 46 0.75
35 3 0.05
ACGTcount: A:0.44, C:0.01, G:0.14, T:0.41
Consensus pattern (33 bp):
AAAATTAATTAAATTAGGTTTAGGAGTTTTAAG
Found at i:37219764 original size:123 final size:123
Alignment explanation
Indices: 37219544--37219935 Score: 434
Period size: 123 Copynumber: 3.2 Consensus size: 123
37219534 TTTTGTTTGT
* * * * *
37219544 TTTTTCTACAGTAGTTTTTGAAAAATTAATTTTGAGAAGACGGTTCTAAAAAAAAGTGACAAAAA
1 TTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGATTCTAAAAATAA-TGTC-AAAA
* * *
37219609 CGCATCAAGAAGGATGCACTATCAGCAAAAGTATTGAAAAAAGCTCCCACAT-GATGCTC
64 CGCTTCAAGAAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACATAGATGCTC
* *
37219668 TTTTTCTACAGTAGTTTCT-AAAAAGATACTTTTGAGAAGACGATTTTGAAAAAGTAATGTC-AA
1 TTTTTCTACAGTAGTTTCTGAAAAA-ATAATTTTGAGAAGACGATTCT-AAAAA-TAATGTCAAA
* * * **
37219731 ACGTTTCAAGTAGCATGCACTGTCAGCAAAAGTACT-AAAAAAGCTCAAACATAGACT-CTC
63 ACGCTTCAAGAAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACATAGA-TGCTC
* * *
37219791 TTTTTCTATAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTAAAAAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGATTCT--AAAAATAATGTC-AAA
* * * * * * *
37219856 ACGCTTCAAGGAGGATGCACTGTCAGCAAAATTACTGAGAAAATCTCCCACGTGGACGCTC
63 ACGCTTCAAGAAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACATAGATGCTC
*
37219917 CTTTTCTACAGTAGTTTCT
1 TTTTTCTACAGTAGTTTCT
37219936 ACTTGGCCTT
Statistics
Matches: 222, Mismatches: 35, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
122 14 0.06
123 85 0.38
124 47 0.21
125 42 0.19
126 34 0.15
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (123 bp):
TTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGATTCTAAAAATAATGTCAAAACG
CTTCAAGAAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACATAGATGCTC
Found at i:37224283 original size:21 final size:21
Alignment explanation
Indices: 37224259--37224298 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
37224249 TCAGCACACT
*
37224259 CAGATACATCCACAACAAAGC
1 CAGATACACCCACAACAAAGC
* *
37224280 CAGATGCACCCACACCAAA
1 CAGATACACCCACAACAAA
37224299 ATCAGACGCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.38, G:0.10, T:0.07
Consensus pattern (21 bp):
CAGATACACCCACAACAAAGC
Found at i:37235141 original size:24 final size:26
Alignment explanation
Indices: 37235114--37235162 Score: 75
Period size: 24 Copynumber: 1.9 Consensus size: 26
37235104 TTGTTATAAA
37235114 AAAATTATA-AAAT-AAAAATTAATT
1 AAAATTATATAAATAAAAAATTAATT
37235138 AAAATTATATAAATGAAAAAATTAA
1 AAAATTATATAAAT-AAAAAATTAA
37235163 ATAATATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.41
25 4 0.18
27 9 0.41
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (26 bp):
AAAATTATATAAATAAAAAATTAATT
Found at i:37240041 original size:16 final size:16
Alignment explanation
Indices: 37240020--37240069 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
37240010 TGGTTCGCTC
37240020 TATTGCATTAGAGGTG
1 TATTGCATTAGAGGTG
37240036 TATTGCATTAGAGGTG
1 TATTGCATTAGAGGTG
* * *
37240052 TAATGGAATAGAGGTG
1 TATTGCATTAGAGGTG
37240068 TA
1 TA
37240070 ATAGCAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.30, C:0.04, G:0.32, T:0.34
Consensus pattern (16 bp):
TATTGCATTAGAGGTG
Found at i:37240070 original size:16 final size:16
Alignment explanation
Indices: 37240023--37240076 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
37240013 TTCGCTCTAT
* *
37240023 TGCATTAGAGGTGTAT
1 TGCAATAGAGGTGTAA
*
37240039 TGCATTAGAGGTGTAA
1 TGCAATAGAGGTGTAA
*
37240055 TGGAATAGAGGTGTAA
1 TGCAATAGAGGTGTAA
37240071 TAGCAA
1 T-GCAA
37240077 ATTAACTGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
16 30 0.91
17 3 0.09
ACGTcount: A:0.33, C:0.06, G:0.31, T:0.30
Consensus pattern (16 bp):
TGCAATAGAGGTGTAA
Found at i:37240314 original size:25 final size:25
Alignment explanation
Indices: 37240282--37240336 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
37240272 TAATTTAATC
*
37240282 ATAT-TTAAACATAATTATTATT-AA
1 ATATATTAAACAT-ATTATAATTAAA
*
37240306 ATATATTAAATATATTATAATTAAA
1 ATATATTAAACATATTATAATTAAA
37240331 ATATAT
1 ATATAT
37240337 ACTTTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATATATTAAACATATTATAATTAAA
Found at i:37240518 original size:47 final size:46
Alignment explanation
Indices: 37240467--37240628 Score: 139
Period size: 47 Copynumber: 3.6 Consensus size: 46
37240457 GATTTAATAA
37240467 AATTTAAAATAATTATAATTAATAAATTATCTTATATGAATTTGTAT
1 AATTTAAAATAATTAT-ATTAATAAATTATCTTATATGAATTTGTAT
*
37240514 AATTTAAAATAATTATTATTACAT--ATAAT-TTA-AT-AA---GATAT
1 AATTTAAAATAATTA-TATTA-ATAAATTATCTTATATGAATTTG-TAT
* * *
37240555 AATTTCATAA-AATTAT-TGATAATAAATTTTCTTATATGAATTTATAT
1 AATTT-AAAATAATTATAT--TAATAAATTATCTTATATGAATTTGTAT
37240602 AATTTAAAATAATT-TATATAATAAATT
1 AATTTAAAATAATTATAT-TAATAAATT
37240629 TATTGTATAA
Statistics
Matches: 93, Mismatches: 6, Indels: 33
0.70 0.05 0.25
Matches are distributed among these distances:
39 1 0.01
40 4 0.04
41 15 0.16
42 6 0.06
43 5 0.05
44 4 0.04
45 5 0.05
46 18 0.19
47 32 0.34
48 3 0.03
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.46
Consensus pattern (46 bp):
AATTTAAAATAATTATATTAATAAATTATCTTATATGAATTTGTAT
Found at i:37242386 original size:23 final size:23
Alignment explanation
Indices: 37242360--37242407 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
37242350 GCAAATAGAT
37242360 AAGACTTTAATTAAAACAAAGAC
1 AAGACTTTAATTAAAACAAAGAC
37242383 AAGACTTTAATTAAAACAAAGAC
1 AAGACTTTAATTAAAACAAAGAC
37242406 AA
1 AA
37242408 CAACCTAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.58, C:0.12, G:0.08, T:0.21
Consensus pattern (23 bp):
AAGACTTTAATTAAAACAAAGAC
Found at i:37250834 original size:6 final size:6
Alignment explanation
Indices: 37250825--37250852 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
37250815 TAGGATAACA
37250825 TTTGCC TTTGCC TTTGCC TTTGCC TTTG
1 TTTGCC TTTGCC TTTGCC TTTGCC TTTG
37250853 GTCCTAACAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.29, G:0.18, T:0.54
Consensus pattern (6 bp):
TTTGCC
Found at i:37250983 original size:23 final size:22
Alignment explanation
Indices: 37250943--37250994 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
37250933 AACCTCCGTT
*
37250943 TCTTCTCTCTTTTCAAACGCCTC
1 TCTTCCCT-TTTTCAAACGCCTC
* *
37250966 TCGTTCCCTTTTTGAAACGTCTC
1 TC-TTCCCTTTTTCAAACGCCTC
37250989 TCTTCC
1 TCTTCC
37250995 TTCCTTCGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 4 0.16
23 16 0.64
24 5 0.20
ACGTcount: A:0.12, C:0.37, G:0.08, T:0.44
Consensus pattern (22 bp):
TCTTCCCTTTTTCAAACGCCTC
Found at i:37251104 original size:30 final size:30
Alignment explanation
Indices: 37251070--37251126 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
37251060 CTTCTGATTT
*
37251070 AATTCGTCGTCTCGTCGTTCTAAATTATCC
1 AATTCGTCGTCTCATCGTTCTAAATTATCC
37251100 AATTCGTCGTCTCATCGTTCTAAATTA
1 AATTCGTCGTCTCATCGTTCTAAATTA
37251127 CCTTTCTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.40
Consensus pattern (30 bp):
AATTCGTCGTCTCATCGTTCTAAATTATCC
Found at i:37262075 original size:41 final size:40
Alignment explanation
Indices: 37261914--37262097 Score: 206
Period size: 41 Copynumber: 4.5 Consensus size: 40
37261904 TTATTCTTTG
* * *
37261914 AAATGCACATACGTGTCCCTGTTTGTACTTCAGTACCCTT
1 AAATGCACATACGTGCCCCTGTTCGTACTTCAGTACCCCT
* *
37261954 AAAATGCTCATACGTGCCCCTGTTCGTACTTCAGTACACCT
1 -AAATGCACATACGTGCCCCTGTTCGTACTTCAGTACCCCT
** * *
37261995 GAAATGCACATGTGTTCCCCTGTTCGTACTTCGGTACCCCT
1 -AAATGCACATACGTGCCCCTGTTCGTACTTCAGTACCCCT
* *
37262036 AAATTGAACATACGTGCCCCTGTTTGTACTTCAGTACCCCT
1 AAA-TGCACATACGTGCCCCTGTTCGTACTTCAGTACCCCT
* * *
37262077 GAATAGCACCTATGTGCCCCT
1 AAAT-GCACATACGTGCCCCT
37262098 ATTTACACTC
Statistics
Matches: 119, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
40 4 0.03
41 115 0.97
ACGTcount: A:0.22, C:0.30, G:0.16, T:0.31
Consensus pattern (40 bp):
AAATGCACATACGTGCCCCTGTTCGTACTTCAGTACCCCT
Found at i:37262097 original size:82 final size:82
Alignment explanation
Indices: 37261912--37262097 Score: 239
Period size: 82 Copynumber: 2.3 Consensus size: 82
37261902 AATTATTCTT
* * * * **
37261912 TGAAATGCACATACGTGTCCCTGTTTGTACTTCAGTACCCTTAAAATGCTCATACGTGCCCCTGT
1 TGAAATGCACATATGTGCCCCTGTTCGTACTTCAGTACCCCTAAAATGAACATACGTGCCCCTGT
37261977 TCGTACTTCAGTACACC
66 TCGTACTTCAGTACACC
* * * *
37261994 TGAAATGCACATGTGTTCCCCTGTTCGTACTTCGGTACCCCTAAATTGAACATACGTGCCCCTGT
1 TGAAATGCACATATGTGCCCCTGTTCGTACTTCAGTACCCCTAAAATGAACATACGTGCCCCTGT
* *
37262059 TTGTACTTCAGTACCCC
66 TCGTACTTCAGTACACC
*
37262076 TG-AATAGCACCTATGTGCCCCT
1 TGAAAT-GCACATATGTGCCCCT
37262098 ATTTACACTC
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 3 0.03
82 85 0.97
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.31
Consensus pattern (82 bp):
TGAAATGCACATATGTGCCCCTGTTCGTACTTCAGTACCCCTAAAATGAACATACGTGCCCCTGT
TCGTACTTCAGTACACC
Found at i:37262391 original size:14 final size:14
Alignment explanation
Indices: 37262374--37262409 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
37262364 GTAGTGTTGA
37262374 GTTATTC-AGATTTT
1 GTTATTCGA-ATTTT
37262388 GTTATTCGAATTTT
1 GTTATTCGAATTTT
37262402 GTTATTCG
1 GTTATTCG
37262410 GGTTTCTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 20 0.95
15 1 0.05
ACGTcount: A:0.19, C:0.08, G:0.17, T:0.56
Consensus pattern (14 bp):
GTTATTCGAATTTT
Found at i:37263586 original size:18 final size:17
Alignment explanation
Indices: 37263558--37264540 Score: 313
Period size: 16 Copynumber: 61.3 Consensus size: 17
37263548 TAAGACAATA
*
37263558 AATTTCATAACTTACGT
1 AATTTCATAACTTACAT
37263575 AATTTACATAACTTACAT
1 AATTT-CATAACTTACAT
* *
37263593 AATAT-ATAACGTACAT
1 AATTTCATAACTTACAT
**
37263609 AATTT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
*
37263622 AATATCATAACTTACAT
1 AATTTCATAACTTACAT
*
37263639 -TTCTTACATAACTTACAT
1 AAT-TT-CATAACTTACAT
37263657 AATTTACATAACTTACAT
1 AATTT-CATAACTTACAT
*
37263675 AA-TACATCAA-TTACAT
1 AATTTCAT-AACTTACAT
* * *
37263691 AATTT-A-AA--GAGAA
1 AATTTCATAACTTACAT
*
37263704 AATCTCATAACTTACAT
1 AATTTCATAACTTACAT
* * *
37263721 AA-TACATAACGTATAT
1 AATTTCATAACTTACAT
* **
37263737 AAGTT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
*
37263750 AATATCATAACTTACAT
1 AATTTCATAACTTACAT
*
37263767 -TTCTTACATAACTTACAT
1 AAT-TT-CATAACTTACAT
37263785 AATTTGCATAACTTACAT
1 AATTT-CATAACTTACAT
* *
37263803 AA-TACATAACGTACAT
1 AATTTCATAACTTACAT
* **
37263819 AAGTT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
* **
37263832 AATATCATGTTCTTACAT
1 AATTTCAT-AACTTACAT
37263850 AATTTACATAACTTACAT
1 AATTT-CATAACTTACAT
*
37263868 AA-TACATCAA-TTACAT
1 AATTTCAT-AACTTACAT
* * **
37263884 ACTAT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
37263897 AATTTCATAACTTACAT
1 AATTTCATAACTTACAT
*
37263914 AA-TACATAACTTACAT
1 AATTTCATAACTTACAT
**
37263930 AATTT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
37263943 AATTTCATAACTTACAT
1 AATTTCATAACTTACAT
* * *
37263960 AA-TACATAACGTATAT
1 AATTTCATAACTTACAT
* **
37263976 AAGTT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
*
37263989 AATATCATAACTTACAT
1 AATTTCATAACTTACAT
*
37264006 -TTCTTACATAACTTACAT
1 AAT-TT-CATAACTTACAT
37264024 AATTTGCATAACTTACAT
1 AATTT-CATAACTTACAT
* *
37264042 AA-TACATAACGTACAT
1 AATTTCATAACTTACAT
* **
37264058 AAGTT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
* **
37264071 AATATCATGTTCTTACAT
1 AATTTCAT-AACTTACAT
37264089 AATTTACATAACTTACAT
1 AATTT-CATAACTTACAT
37264107 AATTTACATAACTTACAT
1 AATTT-CATAACTTACAT
*
37264125 AA-TACATCAA-TTACAT
1 AATTTCAT-AACTTACAT
* **
37264141 AATAT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
37264154 AATTTCATAACTTACAT
1 AATTTCATAACTTACAT
*
37264171 AA-TACATAACTTACAT
1 AATTTCATAACTTACAT
**
37264187 AATTT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
*
37264200 AATTTCATAATTTACAT
1 AATTTCATAACTTACAT
* * *
37264217 AA-TACATAACGTATAT
1 AATTTCATAACTTACAT
* **
37264233 AAGTT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
*
37264246 AATATCATAACTTACAT
1 AATTTCATAACTTACAT
*
37264263 -TTCTTACATAACTTACAT
1 AAT-TT-CATAACTTACAT
37264281 AATTTGCATAACTTACAT
1 AATTT-CATAACTTACAT
* *
37264299 AA-TACATAACGTACAT
1 AATTTCATAACTTACAT
* **
37264315 AAGTT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
* **
37264328 AATATCATGTTCTTACAT
1 AATTTCAT-AACTTACAT
37264346 AATTTACATAACTTACAT
1 AATTT-CATAACTTACAT
37264364 AATTTACATAACTTACAT
1 AATTT-CATAACTTACAT
*
37264382 AA-TACATCAA-TTACAT
1 AATTTCAT-AACTTACAT
**
37264398 AA--T-ATAGAGAT-CA-
1 AATTTCATA-ACTTACAT
37264411 AATTTCATAACTTACAT
1 AATTTCATAACTTACAT
*
37264428 AA-TACATAACTTACAT
1 AATTTCATAACTTACAT
**
37264444 AATTT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
*
37264457 AATTTCATAA-TAAACA-
1 AATTTCATAACT-TACAT
* *
37264473 ACTTACATAACTTACAT
1 AATTTCATAACTTACAT
* *
37264490 AA-TACATAAGTTACAT
1 AATTTCATAACTTACAT
37264506 AATTT-A-AA--TATCA-
1 AATTTCATAACTTA-CAT
*
37264519 AATTTTATAACTTACAT
1 AATTTCATAACTTACAT
37264536 AATTT
1 AATTT
37264541 AAAGATTTTA
Statistics
Matches: 706, Mismatches: 155, Indels: 210
0.66 0.14 0.20
Matches are distributed among these distances:
13 60 0.08
14 48 0.07
15 68 0.10
16 250 0.35
17 64 0.09
18 203 0.29
19 13 0.02
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (17 bp):
AATTTCATAACTTACAT
Found at i:37263653 original size:9 final size:9
Alignment explanation
Indices: 37263627--37264507 Score: 212
Period size: 9 Copynumber: 96.6 Consensus size: 9
37263617 GATCAAATAT
37263627 CATAACTTA
1 CATAACTTA
**
37263636 CATTTCTTA
1 CATAACTTA
37263645 CATAACTTA
1 CATAACTTA
*
37263654 CATAATTTA
1 CATAACTTA
37263663 CATAACTTA
1 CATAACTTA
37263672 CATAA--TA
1 CATAACTTA
37263679 CATCAA-TTA
1 CAT-AACTTA
*
37263688 CATAATTTAAA
1 CATAACTT--A
* * *
37263699 GAGAAAATCT-
1 CA-TAACT-TA
37263709 CATAACTTA
1 CATAACTTA
37263718 CATAA--TA
1 CATAACTTA
*
37263725 CATAACGTA
1 CATAACTTA
* *
37263734 TATAAGTTAAA
1 CATAACTT--A
* *
37263745 GATCAA-ATA
1 CAT-AACTTA
37263754 TCATAACTTA
1 -CATAACTTA
**
37263764 CATTTCTTA
1 CATAACTTA
37263773 CATAACTTA
1 CATAACTTA
* *
37263782 CATAATTTG
1 CATAACTTA
37263791 CATAACTTA
1 CATAACTTA
37263800 CATAA--TA
1 CATAACTTA
*
37263807 CATAACGTA
1 CATAACTTA
*
37263816 CATAAGTTAAA
1 CATAACTT--A
* *
37263827 GATCAA-ATA
1 CAT-AACTTA
**
37263836 TCATGTTCTTA
1 -CAT-AACTTA
*
37263847 CATAATTTA
1 CATAACTTA
37263856 CATAACTTA
1 CATAACTTA
37263865 CATAA--TA
1 CATAACTTA
37263872 CATCAA-TTA
1 CAT-AACTTA
37263881 CAT-ACTATAAA
1 CATAACT-T--A
* * *
37263892 GATCAAATTT
1 CAT-AACTTA
37263902 CATAACTTA
1 CATAACTTA
37263911 CATAA--TA
1 CATAACTTA
37263918 CATAACTTA
1 CATAACTTA
*
37263927 CATAATTTAAA
1 CATAACTT--A
* * *
37263938 GATCAAATTT
1 CAT-AACTTA
37263948 CATAACTTA
1 CATAACTTA
37263957 CATAA--TA
1 CATAACTTA
*
37263964 CATAACGTA
1 CATAACTTA
* *
37263973 TATAAGTTAAA
1 CATAACTT--A
* *
37263984 GATCAA-ATA
1 CAT-AACTTA
37263993 TCATAACTTA
1 -CATAACTTA
**
37264003 CATTTCTTA
1 CATAACTTA
37264012 CATAACTTA
1 CATAACTTA
* *
37264021 CATAATTTG
1 CATAACTTA
37264030 CATAACTTA
1 CATAACTTA
37264039 CATAA--TA
1 CATAACTTA
*
37264046 CATAACGTA
1 CATAACTTA
*
37264055 CATAAGTTAAA
1 CATAACTT--A
* *
37264066 GATCAA-ATA
1 CAT-AACTTA
**
37264075 TCATGTTCTTA
1 -CAT-AACTTA
*
37264086 CATAATTTA
1 CATAACTTA
37264095 CATAACTTA
1 CATAACTTA
*
37264104 CATAATTTA
1 CATAACTTA
37264113 CATAACTTA
1 CATAACTTA
37264122 CATAA--TA
1 CATAACTTA
37264129 CATCAA-TTA
1 CAT-AACTTA
37264138 CATAA-TATAAA
1 CATAACT-T--A
* * *
37264149 GATCAAATTT
1 CAT-AACTTA
37264159 CATAACTTA
1 CATAACTTA
37264168 CATAA--TA
1 CATAACTTA
37264175 CATAACTTA
1 CATAACTTA
*
37264184 CATAATTTAAA
1 CATAACTT--A
* * *
37264195 GATCAAATTT
1 CAT-AACTTA
*
37264205 CATAATTTA
1 CATAACTTA
37264214 CATAA--TA
1 CATAACTTA
*
37264221 CATAACGTA
1 CATAACTTA
* *
37264230 TATAAGTTAAA
1 CATAACTT--A
* *
37264241 GATCAA-ATA
1 CAT-AACTTA
37264250 TCATAACTTA
1 -CATAACTTA
**
37264260 CATTTCTTA
1 CATAACTTA
37264269 CATAACTTA
1 CATAACTTA
* *
37264278 CATAATTTG
1 CATAACTTA
37264287 CATAACTTA
1 CATAACTTA
37264296 CATAA--TA
1 CATAACTTA
*
37264303 CATAACGTA
1 CATAACTTA
*
37264312 CATAAGTTAAA
1 CATAACTT--A
* *
37264323 GATCAA-ATA
1 CAT-AACTTA
**
37264332 TCATGTTCTTA
1 -CAT-AACTTA
*
37264343 CATAATTTA
1 CATAACTTA
37264352 CATAACTTA
1 CATAACTTA
*
37264361 CATAATTTA
1 CATAACTTA
37264370 CATAACTTA
1 CATAACTTA
37264379 CATAA--TA
1 CATAACTTA
37264386 CATCAA-TTA
1 CAT-AACTTA
37264395 CATAA-TATAGA
1 CATAACT-T--A
* * *
37264406 GATCAAATTT
1 CAT-AACTTA
37264416 CATAACTTA
1 CATAACTTA
37264425 CATAA--TA
1 CATAACTTA
37264432 CATAACTTA
1 CATAACTTA
*
37264441 CATAATTTAAA
1 CATAACTT--A
* * *
37264452 GATCAAATTT
1 CAT-AACTTA
37264462 CATAA--TA
1 CATAACTTA
* *
37264469 AACAACTTA
1 CATAACTTA
37264478 CATAACTTA
1 CATAACTTA
37264487 CATAA--TA
1 CATAACTTA
*
37264494 CATAAGTTA
1 CATAACTTA
37264503 CATAA
1 CATAA
37264508 TTTAAATATC
Statistics
Matches: 641, Mismatches: 140, Indels: 182
0.67 0.15 0.19
Matches are distributed among these distances:
7 95 0.15
8 18 0.03
9 399 0.62
10 40 0.06
11 50 0.08
12 34 0.05
13 5 0.01
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:37263664 original size:82 final size:82
Alignment explanation
Indices: 37263563--37263720 Score: 246
Period size: 82 Copynumber: 1.9 Consensus size: 82
37263553 CAATAAATTT
* * **
37263563 CATAACTTACGTAATTTACATAACTTACATAATATAT-AACGTACATAATTTAAAGATCAAATAT
1 CATAACTTACATAATTTACATAACTTACATAATACATCAA-GTACATAATTTAAAGAGAAAATAT
37263627 CATAACTTACATTTCTTA
65 CATAACTTACATTTCTTA
* *
37263645 CATAACTTACATAATTTACATAACTTACATAATACATCAATTACATAATTTAAAGAGAAAATCTC
1 CATAACTTACATAATTTACATAACTTACATAATACATCAAGTACATAATTTAAAGAGAAAATATC
37263710 ATAACTTACAT
66 ATAACTTACAT
37263721 AATACATAAC
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
82 67 0.97
83 2 0.03
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.35
Consensus pattern (82 bp):
CATAACTTACATAATTTACATAACTTACATAATACATCAAGTACATAATTTAAAGAGAAAATATC
ATAACTTACATTTCTTA
Found at i:37263721 original size:46 final size:46
Alignment explanation
Indices: 37263663--37264453 Score: 193
Period size: 46 Copynumber: 17.8 Consensus size: 46
37263653 ACATAATTTA
* * *
37263663 CATAACTTACATAATACATCAA-TTACATAATTTAAAGAGAAAATCT
1 CATAACTTACATAATACAT-AACGTACATAAGTTAAAGAGAAAATAT
* **
37263709 CATAACTTACATAATACATAACGTATATAAGTTAAAGATCAAATAT
1 CATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATAT
* * * * * **
37263755 CATAACTTACAT--T---T--CTTACATAACTT--ACA-TAATTTG
1 CATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATAT
**
37263791 CATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATAT
1 CATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATAT
** * * * *
37263837 CATGTTCTTACATAATTTACATAACTTACATAA-TACATCAATTACATACTATAAAGAT
1 CAT-AACTTACATAA--TACATAACGTACATAAGT---T--A--A-AGA-GA-AAATAT
* * * ** *
37263895 CA-AA-TTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAA--TACAT-A-ACGT-----ACATAAGTTAAAGAGAAAATAT
* **
37263948 CATAACTTACATAATACATAACGTATATAAGTTAAAGATCAAATAT
1 CATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATAT
* * * * * **
37263994 CATAACTTACAT--T---T--CTTACATAACTT--ACA-TAATTTG
1 CATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATAT
**
37264030 CATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATAT
1 CATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATAT
* ** * * * **
37264076 CAT--GTT-C-T--TACATAATTTACATAACTT--ACATAATTTA-
1 CATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATAT
* ** *
37264113 CATAACTTACATAATACATCAA-TTACATAA-TATAAAGATCAAATTT
1 CATAACTTACATAATACAT-AACGTACATAAGT-TAAAGAGAAAATAT
* * ** *
37264159 CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATAT
* * **
37264205 CATAATTTACATAATACATAACGTATATAAGTTAAAGATCAAATAT
1 CATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATAT
* * * * * **
37264251 CATAACTTACAT--T---T--CTTACATAACTT--ACA-TAATTTG
1 CATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATAT
**
37264287 CATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATAT
1 CATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATAT
* ** * * * **
37264333 CAT--GTT-C-T--TACATAATTTACATAACTT--ACATAATTTA-
1 CATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATAT
* * *
37264370 CATAACTTACATAATACATCAA-TTACATAA--TATAGAGATCAAATTT
1 CATAACTTACATAATACAT-AACGTACATAAGTTAAAGAGA--AAATAT
* *
37264416 CATAACTTACATAATACATAACTTACATAATTTAAAGA
1 CATAACTTACATAATACATAACGTACATAAGTTAAAGA
37264454 TCAAATTTCA
Statistics
Matches: 557, Mismatches: 106, Indels: 162
0.68 0.13 0.20
Matches are distributed among these distances:
36 45 0.08
37 12 0.02
38 15 0.03
39 31 0.06
40 34 0.06
41 9 0.02
42 3 0.01
43 62 0.11
44 11 0.02
45 19 0.03
46 218 0.39
47 10 0.02
48 6 0.01
49 15 0.03
51 4 0.01
52 1 0.00
53 12 0.02
54 3 0.01
55 23 0.04
56 4 0.01
57 4 0.01
58 8 0.01
60 1 0.00
62 6 0.01
63 1 0.00
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (46 bp):
CATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATAT
Found at i:37263751 original size:128 final size:128
Alignment explanation
Indices: 37263581--37264365 Score: 739
Period size: 128 Copynumber: 6.2 Consensus size: 128
37263571 ACGTAATTTA
* *
37263581 CATAACTTACATAATATATAACGTACATAATTTAAAGATCAAATATCATAACTTACATTTCTTAC
1 CATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATAACTTACATTTCTTAC
* *
37263646 ATAACTTACATAATTTACATAACTTACATAATACATCAA-TTACATAATTTAAAGAGAAAATCT
66 ATAACTTACATAATTTACATAACTTACATAATACAT-AACGTACATAAGTTAAAGAGAAAATCT
*
37263709 CATAACTTACATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTAC
1 CATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATAACTTACATTTCTTAC
* ** *
37263774 ATAACTTACATAATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATAT
66 ATAACTTACATAATTTACATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATCT
** * * * **
37263837 CATGTTCTTACATAATTTACATAACTTACATAA--T--ACATCAATTA-CAT-ACTATA-A--AG
1 CAT-AACTTACATAA--TACATAACGTACATAAGTTAAAGATCAAATATCATAACT-TACATTTC
* * * * **
37263893 AT-CA-AA-TTTCATAACTTACATAA--TACAT-A-AC-T----TACATAATTTAAAGATCAAAT
62 TTACATAACTTACATAATTTACATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAAT
*
37263946 TT
127 CT
*
37263948 CATAACTTACATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTAC
1 CATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATAACTTACATTTCTTAC
* ** *
37264013 ATAACTTACATAATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATAT
66 ATAACTTACATAATTTACATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATCT
** * * * * ***
37264076 CATGTTCTTACATAATTTACATAACTTACATAA-TT-TACAT-AACT-TACATAA--TACATCAA
1 CAT-AACTTACATAA--TACATAACGTACATAAGTTAAAGATCAAATAT-CATAACTTACATTTC
* * * *
37264135 TTACATAA-TATAAAGATCAAATTT-CATAACTTACATAATACATAACTTACATAATTTAAAGAT
62 TTACATAACT-T--ACAT--AATTTACATAACTTACATAATACATAACGTACATAAGTTAAAGAG
* *
37264198 CAAATTT
122 AAAATCT
* *
37264205 CATAATTTACATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTAC
1 CATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATAACTTACATTTCTTAC
* ** *
37264270 ATAACTTACATAATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATAT
66 ATAACTTACATAATTTACATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATCT
** *
37264333 CATGTTCTTACATAATTTACATAACTTACATAA
1 CAT-AACTTACATAA--TACATAACGTACATAA
37264366 TTTACATAAC
Statistics
Matches: 540, Mismatches: 71, Indels: 89
0.77 0.10 0.13
Matches are distributed among these distances:
108 14 0.03
110 10 0.02
111 24 0.04
112 8 0.01
113 5 0.01
114 4 0.01
115 1 0.00
116 3 0.01
117 3 0.01
118 7 0.01
119 14 0.03
120 14 0.03
121 7 0.01
122 3 0.01
123 3 0.01
124 1 0.00
125 5 0.01
126 33 0.06
127 18 0.03
128 211 0.39
129 87 0.16
130 8 0.01
131 56 0.10
132 1 0.00
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.35
Consensus pattern (128 bp):
CATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATAACTTACATTTCTTAC
ATAACTTACATAATTTACATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATCT
Found at i:37263853 original size:65 final size:64
Alignment explanation
Indices: 37263645--37263932 Score: 245
Period size: 65 Copynumber: 4.5 Consensus size: 64
37263635 ACATTTCTTA
* * * ** *
37263645 CATAACTTACATAATTTACATAACTTACATAATACATCAATTACATAATTTAAAGAGAAAATCT
1 CATAACTTACATAATTTACATAACTTACATAATACATCAAGTACATACTATAAAGATCAAATAT
* * * * * **
37263709 CATAACTTACATAA--TACATAACGTATATAAGTTAAAGATCAAATATCATAACT-TACATTTC-
1 CATAACTTACATAATTTACATAACTTACATAA--T--ACATCAAGTA-CAT-ACTATAAAGATCA
*
37263770 -TTA-
60 AATAT
* *
37263773 CATAACTTACATAATTTGCATAACTTACATAATACAT-AACGTACATAAGT-TAAAGATCAAATA
1 CATAACTTACATAATTTACATAACTTACATAATACATCAA-GTACAT-ACTATAAAGATCAAATA
37263836 T
64 T
** * *
37263837 CATGTTCTTACATAATTTACATAACTTACATAATACATCAATTACATACTATAAAGATCAAATTT
1 CAT-AACTTACATAATTTACATAACTTACATAATACATCAAGTACATACTATAAAGATCAAATAT
37263902 CATAACTTACATAA--TACATAACTTACATAAT
1 CATAACTTACATAATTTACATAACTTACATAAT
37263933 TTAAAGATCA
Statistics
Matches: 179, Mismatches: 30, Indels: 32
0.74 0.12 0.13
Matches are distributed among these distances:
61 13 0.07
62 36 0.20
63 2 0.01
64 44 0.25
65 53 0.30
66 23 0.13
67 6 0.03
68 2 0.01
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (64 bp):
CATAACTTACATAATTTACATAACTTACATAATACATCAAGTACATACTATAAAGATCAAATAT
Found at i:37263911 original size:257 final size:254
Alignment explanation
Indices: 37263653--37264466 Score: 1358
Period size: 257 Copynumber: 3.2 Consensus size: 254
37263643 TACATAACTT
** *
37263653 ACAT-AATTTACATAACTTACATAATACATCAA-TTACATAATTTAAAGAGAAAATCTCATAACT
1 ACATAAATTT-CATAACTTACATAATACAT-AACTTACATAATTTAAAGATCAAATTTCATAACT
37263716 TACATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACATAACTT
64 TACATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACATAACTT
37263781 ACATAATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTT
129 ACATAATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTT
37263846 ACATAATTTACATAACTTACATAA-TACAT--C--A-AT--T--A-C-A-TAC-T-ATA-A
194 ACATAATTTACATAACTTACATAATTACATAACTTACATAATACATCAATTACATAATATA
*
37263891 AGATCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTT
1 ACAT-AAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTT
37263956 ACATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACATAACTTA
65 ACATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACATAACTTA
37264021 CATAATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTA
130 CATAATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTA
37264086 CATAATTTACATAACTTACATAATTTACATAACTTACATAATACATCAATTACATAATATAA
195 CATAATTTACATAACTTACATAA-TTACATAACTTACATAATACATCAATTACATAATAT-A
* *
37264148 AGATCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAATTT
1 ACAT-AAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTT
37264213 ACATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACATAACTTA
65 ACATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACATAACTTA
37264278 CATAATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTA
130 CATAATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTA
37264343 CATAATTTACATAACTTACATAATTTACATAACTTACATAATACATCAATTACATAATATA
195 CATAATTTACATAACTTACATAA-TTACATAACTTACATAATACATCAATTACATAATATA
*
37264404 GAGATCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAA
1 -ACAT-AAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAA
37264467 TAAACAACTT
Statistics
Matches: 549, Mismatches: 5, Indels: 25
0.95 0.01 0.04
Matches are distributed among these distances:
238 5 0.01
239 201 0.37
240 5 0.01
241 5 0.01
243 1 0.00
245 1 0.00
246 2 0.00
248 1 0.00
250 1 0.00
251 1 0.00
252 1 0.00
253 3 0.01
254 1 0.00
255 3 0.01
256 1 0.00
257 317 0.58
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.34
Consensus pattern (254 bp):
ACATAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTA
CATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACATAACTTAC
ATAATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTAC
ATAATTTACATAACTTACATAATTACATAACTTACATAATACATCAATTACATAATATA
Found at i:37263930 original size:239 final size:240
Alignment explanation
Indices: 37263657--37264109 Score: 856
Period size: 239 Copynumber: 1.9 Consensus size: 240
37263647 TAACTTACAT
37263657 AATTTACATAACTTACATAATACATCAATTACATAATTTAAAGAGAAAATCTCATAACTTACATA
1 AATTTACATAACTTACATAATACATCAATTACATAATTTAAAGAGAAAATCTCATAACTTACATA
37263722 ATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACATAACTTACATAA
66 ATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACATAACTTACATAA
37263787 TTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTACATAA
131 TTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTACATAA
37263852 TTTACATAACTTACATAATACATCAATTACATACTATAAAGATCA
196 TTTACATAACTTACATAATACATCAATTACATACTATAAAGATCA
** *
37263897 AATTT-CATAACTTACATAATACAT-AACTTACATAATTTAAAGATCAAATTTCATAACTTACAT
1 AATTTACATAACTTACATAATACATCAA-TTACATAATTTAAAGAGAAAATCTCATAACTTACAT
37263960 AATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACATAACTTACATA
65 AATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACATAACTTACATA
37264025 ATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTACATA
130 ATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTACATA
37264090 ATTTACATAACTTACATAAT
195 ATTTACATAACTTACATAAT
37264110 TTACATAACT
Statistics
Matches: 209, Mismatches: 3, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
238 2 0.01
239 202 0.97
240 5 0.02
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (240 bp):
AATTTACATAACTTACATAATACATCAATTACATAATTTAAAGAGAAAATCTCATAACTTACATA
ATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACATAACTTACATAA
TTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTACATAA
TTTACATAACTTACATAATACATCAATTACATACTATAAAGATCA
Found at i:37264212 original size:21 final size:21
Alignment explanation
Indices: 37264133--37264213 Score: 74
Period size: 21 Copynumber: 3.7 Consensus size: 21
37264123 ATAATACATC
*
37264133 AATTACATAATATAAAGATCA
1 AATTACATAATTTAAAGATCA
* *
37264154 AATTTCATAACTTACATA-ATACA
1 AATTACATAATTTA-A-AGAT-CA
37264177 TAACTTACATAATTTAAAGATCA
1 -AA-TTACATAATTTAAAGATCA
*
37264200 AATTTCATAATTTA
1 AATTACATAATTTA
37264214 CATAATACAT
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
21 22 0.46
22 5 0.10
23 6 0.12
24 5 0.10
25 10 0.21
ACGTcount: A:0.49, C:0.12, G:0.02, T:0.36
Consensus pattern (21 bp):
AATTACATAATTTAAAGATCA
Found at i:37264455 original size:46 final size:46
Alignment explanation
Indices: 37264281--37264492 Score: 187
Period size: 46 Copynumber: 4.8 Consensus size: 46
37264271 TAACTTACAT
* *
37264281 AATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCA
1 AATTT-CATAACTTACATAATACATAACTTACATAATTTAAAGATCA
* * * * *
37264328 AATATCAT--GTT-C-T--TACATAATTTACATAACTT--ACAT-A
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
* * * *
37264365 ATTTACATAACTTACATAATACATCAA-TTACATAATATAGAGATCA
1 AATTTCATAACTTACATAATACAT-AACTTACATAATTTAAAGATCA
37264411 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
* *
37264457 AATTTCATAA-TAAACA-ACTTACATAACTTACATAAT
1 AATTTCATAACT-TACATA-ATACATAACTTACATAAT
37264493 ACATAAGTTA
Statistics
Matches: 133, Mismatches: 19, Indels: 27
0.74 0.11 0.15
Matches are distributed among these distances:
37 6 0.05
38 3 0.02
39 2 0.02
40 17 0.13
41 1 0.01
42 1 0.01
43 15 0.11
44 4 0.03
45 7 0.05
46 73 0.55
47 4 0.03
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.34
Consensus pattern (46 bp):
AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
Found at i:37264467 original size:21 final size:21
Alignment explanation
Indices: 37264390--37264467 Score: 59
Period size: 21 Copynumber: 3.5 Consensus size: 21
37264380 ATAATACATC
* *
37264390 AATTACATAATATAGAGATCA
1 AATTACATAATTTAAAGATCA
* *
37264411 AATTTCATAACTTACATA-ATACA
1 AATTACATAATTTA-A-AGAT-CA
37264434 TAACTTACATAATTTAAAGATCA
1 -AA-TTACATAATTTAAAGATCA
*
37264457 AATTTCATAAT
1 AATTACATAAT
37264468 AAACAACTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 12
0.70 0.11 0.19
Matches are distributed among these distances:
21 19 0.43
22 4 0.09
23 6 0.14
24 5 0.11
25 10 0.23
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.35
Consensus pattern (21 bp):
AATTACATAATTTAAAGATCA
Found at i:37264482 original size:83 final size:80
Alignment explanation
Indices: 37264206--37264482 Score: 272
Period size: 83 Copynumber: 3.4 Consensus size: 80
37264196 ATCAAATTTC
* * * * * **
37264206 ATAATTTACATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACA
1 ATAACTTACATAATAAACAACTTACATAAGTTAAAGATCAAATATCATAACTTACA--TAATACA
37264271 TAACTTACATAATTT-G
64 TAACTTACATAATTTAG
* * * **
37264287 CATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTACATAATTTA
1 -ATAACTTACATAATAAACAACTTACATAAGTTAAAGATCAAATATCAT-AACTTACATAA--TA
*
37264352 CATAACTTACATAATTTAC
62 CATAACTTACATAATTTAG
* * *
37264371 ATAACTTACATAATACATCAA-TTACATAA-TATAGAGATCAAATTTCATAACTTACATAATACA
1 ATAACTTACATAATA-AACAACTTACATAAGT-TAAAGATCAAATATCATAACTTACATAATACA
37264434 TAACTTACATAATTTAAAG
64 TAACTTACATAATTT--AG
* *
37264453 ATCAAATTTCATAATAAACAACTTACATAA
1 AT-AACTTACATAATAAACAACTTACATAA
37264483 CTTACATAAT
Statistics
Matches: 166, Mismatches: 19, Indels: 19
0.81 0.09 0.09
Matches are distributed among these distances:
80 19 0.11
81 1 0.01
82 63 0.38
83 81 0.49
84 2 0.01
ACGTcount: A:0.47, C:0.15, G:0.04, T:0.34
Consensus pattern (80 bp):
ATAACTTACATAATAAACAACTTACATAAGTTAAAGATCAAATATCATAACTTACATAATACATA
ACTTACATAATTTAG
Found at i:37264719 original size:9 final size:9
Alignment explanation
Indices: 37264707--37264899 Score: 185
Period size: 9 Copynumber: 22.8 Consensus size: 9
37264697 AGACTTCAAC
37264707 AACTTACAT
1 AACTTACAT
37264716 AACTTACAT
1 AACTTACAT
* *
37264725 TA--TACAC
1 AACTTACAT
37264732 AACTTACAT
1 AACTTACAT
37264741 AACTTACAT
1 AACTTACAT
*
37264750 AACTTATAT
1 AACTTACAT
37264759 AACTTACAT
1 AACTTACAT
* *
37264768 -TC-TACAC
1 AACTTACAT
37264775 AACTTACAT
1 AACTTACAT
*
37264784 AACATACAT
1 AACTTACAT
*
37264793 AA--TACAC
1 AACTTACAT
37264800 AACTTACAT
1 AACTTACAT
*
37264809 AACATACAT
1 AACTTACAT
37264818 AA--TACAT
1 AACTTACAT
37264825 AACTTACAT
1 AACTTACAT
**
37264834 GGCTTACAT
1 AACTTACAT
37264843 AA--TACAT
1 AACTTACAT
*
37264850 AACTTACAG
1 AACTTACAT
37264859 AACTTACAT
1 AACTTACAT
*
37264868 AACTTATAT
1 AACTTACAT
37264877 AA--TACAT
1 AACTTACAT
37264884 AACTTACAT
1 AACTTACAT
*
37264893 AATTTAC
1 AACTTAC
37264900 TTAATATATA
Statistics
Matches: 149, Mismatches: 23, Indels: 24
0.76 0.12 0.12
Matches are distributed among these distances:
7 35 0.23
8 2 0.01
9 112 0.75
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:37264750 original size:34 final size:34
Alignment explanation
Indices: 37264707--37264819 Score: 124
Period size: 34 Copynumber: 3.3 Consensus size: 34
37264697 AGACTTCAAC
37264707 AACTTACATAACTTACATTATACACAACTTACAT
1 AACTTACATAACTTACATTATACACAACTTACAT
* * *
37264741 AACTTACATAACTTATA-TA-ACTTAC-ATTCTACAC
1 AACTTACATAACTTACATTATAC--ACAACT-TACAT
* *
37264775 AACTTACATAACATACATAATACACAACTTACAT
1 AACTTACATAACTTACATTATACACAACTTACAT
*
37264809 AACATACATAA
1 AACTTACATAA
37264820 TACATAACTT
Statistics
Matches: 64, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
32 2 0.03
33 4 0.06
34 53 0.83
35 3 0.05
36 2 0.03
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (34 bp):
AACTTACATAACTTACATTATACACAACTTACAT
Found at i:37264840 original size:34 final size:34
Alignment explanation
Indices: 37264733--37264899 Score: 125
Period size: 34 Copynumber: 4.9 Consensus size: 34
37264723 ATTATACACA
* *
37264733 ACTTACATAACTTACATAACTTATATAACTTACAT
1 ACTTACATAACATACATAAC-TACATAACTTACAT
* * * *
37264768 TC-TACACAACTTACATAACATACATAA--TACACA
1 ACTTACATAACATACATAAC-TACATAACTTACA-T
37264801 ACTTACATAACATACATAA-TACATAACTTACAT
1 ACTTACATAACATACATAACTACATAACTTACAT
* *
37264834 GGCTTACAT-A-ATACATAACTTACAGAACTTACAT
1 -ACTTACATAACATACATAAC-TACATAACTTACAT
* *
37264868 AACTTATAT-A-ATACATAACTTACATAATTTAC
1 -ACTTACATAACATACATAAC-TACATAACTTAC
37264900 TTAATATATA
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
32 19 0.17
33 2 0.02
34 87 0.80
35 1 0.01
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.32
Consensus pattern (34 bp):
ACTTACATAACATACATAACTACATAACTTACAT
Found at i:37264868 original size:50 final size:50
Alignment explanation
Indices: 37264727--37264895 Score: 171
Period size: 50 Copynumber: 3.3 Consensus size: 50
37264717 ACTTACATTA
* * **
37264727 TACACAACTTACATAACTTACATAACTTATATAACTTACATTCTACACAACT
1 TACATAACTTACATAA--TACATAACTTACATAACTTACATAATACACAACT
* * * *
37264779 TACATAACATACATAATACACAACTTACATAACATACATAATACATAACT
1 TACATAACTTACATAATACATAACTTACATAACTTACATAATACACAACT
** * * *
37264829 TACATGGCTTACATAATACATAACTTACAGAACTTACATAACTTATATAA--
1 TACATAACTTACATAATACATAACTTACATAACTTACATAA--TACACAACT
37264879 TACATAACTTACATAAT
1 TACATAACTTACATAAT
37264896 TTACTTAATA
Statistics
Matches: 98, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
50 78 0.80
52 20 0.20
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.31
Consensus pattern (50 bp):
TACATAACTTACATAATACATAACTTACATAACTTACATAATACACAACT
Done.