Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 120 of 226
Found at i:37264910 original size:25 final size:25
Alignment explanation
Indices: 37264707--37264894 Score: 77
Period size: 25 Copynumber: 7.4 Consensus size: 25
37264697 AGACTTCAAC
* * *
37264707 AACTTACATAACTTACATTATACAC
1 AACTTACATAACTTATATAATACAT
* *
37264732 AACTTACATAACTTACATAACTTATAT
1 AACTTACATAACTTATATAA--TACAT
* * *
37264759 AACTTACAT-TC-TACACAACTTACAT
1 AACTTACATAACTTATATAA--TACAT
* * *
37264784 AACATACATAA--TACACAACTTACAT
1 AACTTACATAACTTATATAA--TACAT
* *
37264809 AACATACATAA--TACATAACTTACAT
1 AACTTACATAACTTATATAA--TACAT
** * *
37264834 GGCTTACATAA--TACATAACTTACAG
1 AACTTACATAACTTATATAA--TACAT
37264859 AACTTACATAACTTATATAATACAT
1 AACTTACATAACTTATATAATACAT
37264884 AACTTACATAA
1 AACTTACATAA
37264895 TTTACTTAAT
Statistics
Matches: 141, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
25 122 0.87
26 1 0.01
27 18 0.13
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.31
Consensus pattern (25 bp):
AACTTACATAACTTATATAATACAT
Found at i:37266821 original size:21 final size:21
Alignment explanation
Indices: 37266795--37266865 Score: 90
Period size: 21 Copynumber: 3.4 Consensus size: 21
37266785 GTACAACTTA
37266795 AAGCAGAGGCAGCAGCGAGGG
1 AAGCAGAGGCAGCAGCGAGGG
* * *
37266816 AAGCAGAGG-ATGTAGTGAGAG
1 AAGCAGAGGCA-GCAGCGAGGG
*
37266837 AAGCAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCAGCAGCGAGGG
37266858 AAGCAGAG
1 AAGCAGAG
37266866 TAGAGCAAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
20 1 0.02
21 40 0.98
ACGTcount: A:0.35, C:0.14, G:0.45, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCAGCAGCGAGGG
Found at i:37267296 original size:44 final size:42
Alignment explanation
Indices: 37267246--37267338 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 42
37267236 AAGTGCCACT
37267246 AAAGTCACCAAACAATAGCGACGTTTGTGGGAAAAGCGTCGCTA
1 AAAGTCA-CAAACAATAGC-ACGTTTGTGGGAAAAGCGTCGCTA
** * * * *
37267290 AAAGTCATGATCTATAGCACTTTTGTGTGAAAAGCGTCGCTA
1 AAAGTCACAAACAATAGCACGTTTGTGGGAAAAGCGTCGCTA
*
37267332 AAGGTCA
1 AAAGTCA
37267339 TGATCTATAG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
42 28 0.67
43 7 0.17
44 7 0.17
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (42 bp):
AAAGTCACAAACAATAGCACGTTTGTGGGAAAAGCGTCGCTA
Found at i:37267436 original size:43 final size:43
Alignment explanation
Indices: 37267260--37267426 Score: 203
Period size: 43 Copynumber: 3.9 Consensus size: 43
37267250 TCACCAAACA
* *
37267260 ATAGCGACGTTTGTGGGAAAAGCGTCGCTAAAAGTCATGATCT
1 ATAGCGACGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCT
* * *
37267303 ATAGC-ACTTTTGTGTGAAAAGCGTCGCTAAAGGTCATGATCT
1 ATAGCGACGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCT
* * * **
37267345 ATAGCGGCATTTAT-AAAACAAGCGCCGCTAAAGGTCATGATCT
1 ATAGCGACGTTTGTGGGAA-AAGCGCCGCTAAAGGTCATGATCT
* *
37267388 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATG
1 ATAGCGACGTTTGTGGGAAAAGCGCCGCTAAAGGTCATG
37267427 GCCTTTAGCG
Statistics
Matches: 107, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
42 41 0.38
43 64 0.60
44 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (43 bp):
ATAGCGACGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCT
Found at i:37268867 original size:37 final size:37
Alignment explanation
Indices: 37268791--37268868 Score: 86
Period size: 37 Copynumber: 2.1 Consensus size: 37
37268781 ATTATTTTTT
* * ** *
37268791 ATTATAAAATATTATAGTATTATTTTAAATGTTTAAC
1 ATTAAAAAATATTATAATATTATTAAAAATGTGTAAC
*
37268828 ATTAAAAAATATTATAATATTATTAAAGAAT-TGTGAC
1 ATTAAAAAATATTATAATATTATTAAA-AATGTGTAAC
37268865 ATTA
1 ATTA
37268869 CTTAATTGTG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
37 31 0.91
38 3 0.09
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (37 bp):
ATTAAAAAATATTATAATATTATTAAAAATGTGTAAC
Found at i:37269011 original size:5 final size:5
Alignment explanation
Indices: 37268984--37269040 Score: 50
Period size: 5 Copynumber: 12.0 Consensus size: 5
37268974 ATTACTATAG
* *
37268984 ATAAT AT-AT AT-AT GATAAT ATAAA ATAAT ATAAC ATAAT AT-AT ATAA-
1 ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
*
37269031 ATAAC ATAAT
1 ATAAT ATAAT
37269041 TAGAAAATGA
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
4 14 0.33
5 27 0.63
6 2 0.05
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (5 bp):
ATAAT
Found at i:37269359 original size:21 final size:21
Alignment explanation
Indices: 37269333--37269377 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
37269323 AATAAATATT
*
37269333 TTTAATAAT-TTTCTATAATTA
1 TTTAATAATATTT-AATAATTA
*
37269354 TTTAATAGTATTTAATAATTA
1 TTTAATAATATTTAATAATTA
37269375 TTT
1 TTT
37269378 TAAAAAAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTAATAATATTTAATAATTA
Found at i:37269607 original size:16 final size:16
Alignment explanation
Indices: 37269586--37269616 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37269576 GTTTGTTCAA
*
37269586 GTTCATCCTAGACATG
1 GTTCATCCTAAACATG
37269602 GTTCATCCTAAACAT
1 GTTCATCCTAAACAT
37269617 TAATATTAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (16 bp):
GTTCATCCTAAACATG
Found at i:37277021 original size:48 final size:48
Alignment explanation
Indices: 37276965--37277062 Score: 169
Period size: 48 Copynumber: 2.0 Consensus size: 48
37276955 CTCAAATTTG
37276965 AATACCATTAGACTACTAACAAAGTCATACTATAATTCAATATTATTC
1 AATACCATTAGACTACTAACAAAGTCATACTATAATTCAATATTATTC
* **
37277013 AATACCATTAGACTACTAACAAAGTCATACTCTAATTTGATATTATTC
1 AATACCATTAGACTACTAACAAAGTCATACTATAATTCAATATTATTC
37277061 AA
1 AA
37277063 ACTTACTCTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.43, C:0.18, G:0.05, T:0.34
Consensus pattern (48 bp):
AATACCATTAGACTACTAACAAAGTCATACTATAATTCAATATTATTC
Found at i:37277666 original size:5 final size:5
Alignment explanation
Indices: 37277646--37277786 Score: 266
Period size: 5 Copynumber: 28.2 Consensus size: 5
37277636 CCATGAACAT
37277646 TCATA TCATA -CAATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA
1 TCATA TCATA TC-ATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA
37277696 TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA
1 TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA
37277746 TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA T
1 TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA T
37277787 TGTGTCATTG
Statistics
Matches: 134, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
4 1 0.01
5 132 0.99
6 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
TCATA
Found at i:37284396 original size:37 final size:37
Alignment explanation
Indices: 37284355--37284428 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
37284345 CTTCGCTTGG
37284355 GAAAATTTTGGTATTTTGAATGAATTAGGCCTTACTC
1 GAAAATTTTGGTATTTTGAATGAATTAGGCCTTACTC
37284392 GAAAATTTTGGTATTTTGAATGAATTAGGCCTTACTC
1 GAAAATTTTGGTATTTTGAATGAATTAGGCCTTACTC
37284429 TTGTTTAGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.41
Consensus pattern (37 bp):
GAAAATTTTGGTATTTTGAATGAATTAGGCCTTACTC
Found at i:37291971 original size:17 final size:17
Alignment explanation
Indices: 37291918--37291974 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
37291908 TAATCACTTT
*
37291918 AATATTAAATT-AATAA
1 AATATTAAATTAAATTA
*
37291934 AATACT--ATTAAGA-TA
1 AATATTAAATTAA-ATTA
*
37291949 AGTATTAAATTAAATTA
1 AATATTAAATTAAATTA
37291966 AATATTAAA
1 AATATTAAA
37291975 CTATTAAACT
Statistics
Matches: 31, Mismatches: 5, Indels: 9
0.69 0.11 0.20
Matches are distributed among these distances:
14 3 0.10
15 6 0.19
16 7 0.23
17 15 0.48
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.37
Consensus pattern (17 bp):
AATATTAAATTAAATTA
Found at i:37296959 original size:20 final size:20
Alignment explanation
Indices: 37296936--37297031 Score: 81
Period size: 20 Copynumber: 4.8 Consensus size: 20
37296926 TACCCCAGTT
*
37296936 TGCACTTCGGTGCCTTTGAA
1 TGCACTTCGGTGCCCTTGAA
* *
37296956 TGCACATT-TGTGCCCCTGAA
1 TGCAC-TTCGGTGCCCTTGAA
* *
37296976 TGCACTCCGGTGCCCTTGAT
1 TGCACTTCGGTGCCCTTGAA
* *
37296996 TGCACATT-TGTGCCCCTGAA
1 TGCAC-TTCGGTGCCCTTGAA
37297016 TGCAC-TCTGGTGCCCT
1 TGCACTTC-GGTGCCCT
37297032 AATTGCACAC
Statistics
Matches: 58, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
18 1 0.02
19 1 0.02
20 53 0.91
21 3 0.05
ACGTcount: A:0.15, C:0.31, G:0.23, T:0.31
Consensus pattern (20 bp):
TGCACTTCGGTGCCCTTGAA
Found at i:37296980 original size:40 final size:40
Alignment explanation
Indices: 37296936--37297031 Score: 149
Period size: 40 Copynumber: 2.4 Consensus size: 40
37296926 TACCCCAGTT
*
37296936 TGCACTTCGGTGCCTTTGAATGCACATTTGTGCCCCTGAA
1 TGCACTTCGGTGCCCTTGAATGCACATTTGTGCCCCTGAA
* *
37296976 TGCACTCCGGTGCCCTTGATTGCACATTTGTGCCCCTGAA
1 TGCACTTCGGTGCCCTTGAATGCACATTTGTGCCCCTGAA
37297016 TGCAC-TCTGGTGCCCT
1 TGCACTTC-GGTGCCCT
37297032 AATTGCACAC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.02
40 50 0.98
ACGTcount: A:0.15, C:0.31, G:0.23, T:0.31
Consensus pattern (40 bp):
TGCACTTCGGTGCCCTTGAATGCACATTTGTGCCCCTGAA
Found at i:37298001 original size:54 final size:53
Alignment explanation
Indices: 37297934--37298047 Score: 183
Period size: 54 Copynumber: 2.1 Consensus size: 53
37297924 AGACATGACT
*
37297934 GTGTGTCTTAAGTTAGTGAGTTACACGGTCTATGACACGGGCTGAGACACGGTC
1 GTGTGTCTCAAGTTAGTGAGTTACACGGTCTATGACACGGGCTGAGACACGG-C
* * *
37297988 GTGTGTCTCAAGTTAGTGAGTTACATGGTCTATGACATGGGCTGGGACACGGC
1 GTGTGTCTCAAGTTAGTGAGTTACACGGTCTATGACACGGGCTGAGACACGGC
37298041 GTGTGTC
1 GTGTGTC
37298048 CCTACTTCGA
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
53 8 0.14
54 48 0.86
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.29
Consensus pattern (53 bp):
GTGTGTCTCAAGTTAGTGAGTTACACGGTCTATGACACGGGCTGAGACACGGC
Found at i:37306743 original size:14 final size:14
Alignment explanation
Indices: 37306702--37306747 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
37306692 ATGCAAAATT
37306702 AAGAGAAAAA-GAAG
1 AAGA-AAAAAGGAAG
* *
37306716 AA-AGAAAAGAAAG
1 AAGAAAAAAGGAAG
37306729 AAGAAAAAAGGAAG
1 AAGAAAAAAGGAAG
37306743 AAGAA
1 AAGAA
37306748 CACACGGCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 4 0.15
13 6 0.23
14 16 0.62
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (14 bp):
AAGAAAAAAGGAAG
Found at i:37309471 original size:19 final size:20
Alignment explanation
Indices: 37309433--37309472 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
37309423 TTATATGTAA
*
37309433 TATATATGTATATTTTATTTT
1 TATATATGTATA-TTAATTTT
37309454 TATATATGTATA-TAATTTT
1 TATATATGTATATTAATTTT
37309473 AAGCCTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
21 12 0.67
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (20 bp):
TATATATGTATATTAATTTT
Found at i:37311186 original size:16 final size:16
Alignment explanation
Indices: 37311165--37311198 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
37311155 TGTGTTTCAC
37311165 TTTGACTGCATGGCAT
1 TTTGACTGCATGGCAT
37311181 TTTGACTGCATGGCAT
1 TTTGACTGCATGGCAT
37311197 TT
1 TT
37311199 CATTATAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.41
Consensus pattern (16 bp):
TTTGACTGCATGGCAT
Found at i:37315912 original size:44 final size:44
Alignment explanation
Indices: 37315798--37316927 Score: 831
Period size: 44 Copynumber: 25.4 Consensus size: 44
37315788 CATACTGGTG
** * * *
37315798 GTGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTACTGGC
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* * * *
37315842 AGTGAAGTAGATCAAATATAGCAGATCTTGTCTTCATGTATTGGC
1 -GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* *** * **
37315887 GTGAAGTAGATCGAAGATAATAGATCTTGTCTTCCCATACTCGTG
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTA-TTGAC
* * * *
37315932 GAGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGAC
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* * * * * *
37315976 ATGAAGTAGATCAAAGATAGTAGAACTTTTCTTCCCATACTAGTG--
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTT--CAT-GTATTGAC
* *** * **
37316021 GTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTA-TTGAC
*
37316066 GTGAAGTAGATCGAAGATAAT-GAATCTTGTCTTCATGTATTGAC
1 GTGAAGTAGATCGAAGATAGTAG-ATCTTGTCTTCATGTATTGAC
* * *
37316110 ATGAAGTAGATC-AGAGATAGTGGATCTTGTCTTTATGTATTGAC
1 GTGAAGTAGATCGA-AGATAGTAGATCTTGTCTTCATGTATTGAC
* * *** * **
37316154 ATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTA-TTGAC
* *
37316199 GTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGAC
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* * * * *
37316243 ATGAAGTAGATC-AGAGATAGTGGATCATGTCTTTATGTATTAAC
1 GTGAAGTAGATCGA-AGATAGTAGATCTTGTCTTCATGTATTGAC
* * * * *** * **
37316287 CTGAAGTAGGTCGAAGACAGCAGATCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTA-TTGAC
* * *
37316332 GTGAAGTAGATCGAAGATAATGGATCTTATCTTCATGTATTGAC
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* * * *** * **
37316376 ATGAAGTAGATCGAAGATAGCAGACCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTA-TTGAC
* * *
37316421 GTGAAGTAGATCGAAGATAATGGATCTTGTCTTCTTGTATTGAC
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* * * *
37316465 ATGAAATAGATC-AGAGATAGTGGATCTTGTCTTTATGTATTGAC
1 GTGAAGTAGATCGA-AGATAGTAGATCTTGTCTTCATGTATTGAC
* * * * * **
37316509 ATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCTTATACTGGTG
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTA-TTGAC
* * *
37316554 GTG-AGTAGATCGAAGATAATGGATCCTGTCTTCATGTATTGAC
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* * *
37316597 ATGAAGTAGATC-ATAGATAGTGGGTCTTGTCTTCATGTATTGAC
1 GTGAAGTAGATCGA-AGATAGTAGATCTTGTCTTCATGTATTGAC
* * *** * **
37316641 ATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTA-TTGAC
* * *
37316686 GTGAAGTAGATCTAAGATAATGGATCTTGTCTTCATGTATTGAC
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* * * * * **
37316730 ATGAAGTAGATCAAAGATAGCAGATCTTGTCTTC-TCATACTGGTG
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCAT-GTA-TTGAC
* * * *
37316775 GTGAAGAAGATCTAAGATAATTGATCTTGTCTTCATGTATTGAC
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* * * * * *
37316819 ATGAAATAGATC-AGAGATAGCAGATCTTGTCTTCCTGTACTGGC
1 GTGAAGTAGATCGA-AGATAGTAGATCTTGTCTTCATGTATTGAC
* * ** * *
37316863 AGTAAAGTAGATCAAAGATAACAGATCTTGTTTTCCTGTATTGAC
1 -GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* *
37316908 AGCGAAGAAGATCGAAGATA
1 -GTGAAGTAGATCGAAGATA
37316928 CAAGTCTTAT
Statistics
Matches: 842, Mismatches: 214, Indels: 58
0.76 0.19 0.05
Matches are distributed among these distances:
42 2 0.00
43 12 0.01
44 463 0.55
45 356 0.42
46 5 0.01
47 4 0.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.32
Consensus pattern (44 bp):
GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
Found at i:37315920 original size:89 final size:89
Alignment explanation
Indices: 37315755--37316927 Score: 902
Period size: 89 Copynumber: 13.2 Consensus size: 89
37315745 TATTGGTAGC
* * * *** * *
37315755 GAAGTGGATCAACGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAACA
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCGAAGATAATA
* * *
37315820 GATCTTGTCTTCCTGTACTGGCAGT
65 GATCTTGTCTTCATGTATTGACAGT
* *
37315845 GAAGTAGATCAAATATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAATAG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCGAAGATAATAG
*** * ** *
37315910 ATCTTGTCTTCCCATACTCG-TGGA
66 ATCTTGTCTTCATGTA-TTGACAGT
*** * * * * *
37315934 GAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAGTAG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCGAAGATAATAG
* * * *
37315999 AACTTTTCTTCCCATACTAGTG---GT
66 ATCTTGTCTT--CAT-GTATTGACAGT
* *** *
37316023 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAAT-
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCGAAGATAATA
37316087 GAATCTTGTCTTCATGTATTGACA-T
65 G-ATCTTGTCTTCATGTATTGACAGT
* ** * * * * **
37316112 GAAGTAGATCAGAGATAGTGGATCTTGTCTTTATGTATTGACATGAAGTAGATCGAAGATAGCAG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCGAAGATAATAG
*** * ***
37316177 ATCTTGTCTTCCCATACTGGTGGT
66 ATCTTGTCTTCATGTATTGACAGT
* *** * * * * *
37316201 GAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGTG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCGA-AGATAATA
* * * *
37316265 GATCATGTCTTTATGTATTAAC-CT
65 GATCTTGTCTTCATGTATTGACAGT
* * * *** * *
37316289 GAAGTAGGTCGAAGACAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCGAAGATAATA
*
37316354 GATCTTATCTTCATGTATTGACA-T
65 GATCTTGTCTTCATGTATTGACAGT
* * *** * *
37316378 GAAGTAGATCGAAGATAGCAGACCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCGAAGATAATA
*
37316443 GATCTTGTCTTCTTGTATTGACA-T
65 GATCTTGTCTTCATGTATTGACAGT
* * ** * * * * **
37316467 GAAATAGATCAGAGATAGTGGATCTTGTCTTTATGTATTGACATGAAGTAGATCGAAGATAGCAG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCGAAGATAATAG
* * * ***
37316532 ATCTTGTCTTCTTATACTGGTGGT
66 ATCTTGTCTTCATGTATTGACAGT
* *** * * * * * *
37316556 G-AGTAGATCGAAGATAATGGATCCTGTCTTCATGTATTGACATGAAGTAGATC-ATAGATAGTG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCGA-AGATAATA
*
37316619 GGTCTTGTCTTCATGTATTGACA-T
65 GATCTTGTCTTCATGTATTGACAGT
* *** * * *
37316643 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCTAAGATAATG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCGAAGATAATA
37316708 GATCTTGTCTTCATGTATTGACA-T
65 GATCTTGTCTTCATGTATTGACAGT
* * * *
37316732 GAAGTAGATCAAAGATAGCAGATCTTGTCTTC-TCATACTGGTGGTGAAGAAGATCTAAGATAAT
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCAT-GTACTGG-CGTGAAGTAGATCGAAGATAAT
*
37316796 TGATCTTGTCTTCATGTATTGACA-T
64 AGATCTTGTCTTCATGTATTGACAGT
* * * * * *
37316821 GAAATAGATCAGAGATAGCAGATCTTGTCTTCCTGTACTGGCAGTAAAGTAGATCAAAGATAACA
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTACTGGC-GTGAAGTAGATCGAAGATAATA
* * *
37316886 GATCTTGTTTTCCTGTATTGACAGC
65 GATCTTGTCTTCATGTATTGACAGT
* *
37316911 GAAGAAGATCGAAGATA
1 GAAGTAGATCAAAGATA
37316928 CAAGTCTTAT
Statistics
Matches: 880, Mismatches: 179, Indels: 48
0.79 0.16 0.04
Matches are distributed among these distances:
87 7 0.01
88 203 0.23
89 590 0.67
90 76 0.09
91 2 0.00
92 2 0.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (89 bp):
GAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCGAAGATAATAG
ATCTTGTCTTCATGTATTGACAGT
Found at i:37316211 original size:133 final size:133
Alignment explanation
Indices: 37315755--37316908 Score: 1024
Period size: 133 Copynumber: 8.7 Consensus size: 133
37315745 TATTGGTAGC
* *
37315755 GAAGTGGATC-AACGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAAC
1 GAAGTAGATCGAA-GATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAAT
* * * * * *
37315819 AGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCAAATATAGCAGATCTTGTCTTCATGTATT
65 GGATCTTGTCTTCATGTATTGACA-TGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATT
*
37315884 GGCGT
129 GACGT
* * * *
37315889 GAAGTAGATCGAAGATAATAGATCTTGTCTTCCCATACTCGTGGAGAAGTAGATCAAAGATAATG
1 GAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
* * * * * *
37315954 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAGTAGAACTTTTCTTCCCATACTAG
66 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTT--CAT-GTAT
37316019 TG--GT
128 TGACGT
*
37316023 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
1 GAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
* ** *
37316088 AATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGTGGATCTTGTCTTTATGTATTGA
66 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATTGA
*
37316153 CAT
131 CGT
*
37316156 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
1 GAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
** * * *
37316221 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGTGGATCATGTCTTTATGTATTAA
66 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATTGA
*
37316286 CCT
131 CGT
* * *
37316289 GAAGTAGGTCGAAGACAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
1 GAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
* * *** *
37316354 GATCTTATCTTCATGTATTGACATGAAGTAGATC-GAAGATAGCAGACCTTGTCTTCCCATACTG
66 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCATGTA-TT
**
37316418 GTGGT
129 GACGT
* * *** * *** * *
37316423 GAAGTAGATCGAAGATAATGGATCTTGTCTTCTTGTA-TTGACATGAAATAGATC-AGAGATAGT
1 GAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGA-AGATAAT
* * *
37316486 GGATCTTGTCTTTATGTATTGACATGAAGTAGATC-GAAGATAGCAGATCTTGTCTTCTTATACT
65 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCATGTA-T
* **
37316550 GGTGGT
128 TGACGT
* * * *** * *** *
37316556 G-AGTAGATCGAAGATAATGGATCCTGTCTTCATGTA-TTGACATGAAGTAGATC-ATAGATAGT
1 GAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGA-AGATAAT
* ***
37316618 GGGTCTTGTCTTCATGTATTGACATGAAGTAGATC-GAAGATAGCAGATCTTGTCTTCCCATACT
65 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCATGTA-T
* **
37316682 GGTGGT
128 TGACGT
* * * *** * *** * ***
37316688 GAAGTAGATCTAAGATAATGGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCAAAGATAGCA
1 GAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
* * *** * ***
37316752 GATCTTGTCTTC-TCATACTGGTGGTGAAGAAGATCTA-AGATAATTGATCTTGTCTTCATGTAT
66 GATCTTGTCTTCAT-GTA-TTGACATGAAGTAGATC-AGAGATAGCAGATCTTGTCTTCATGTAT
*
37316815 TGACAT
128 TGACGT
* * ** ** * * *
37316821 GAAATAGATC-AGAGATAGCAGATCTTGTCTTCCTGTACTGGCAGTAAAGTAGATCAAAGATAAC
1 GAAGTAGATCGA-AGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAAT
* * *
37316885 AGATCTTGTTTTCCTGTATTGACA
65 GGATCTTGTCTTCATGTATTGACA
37316909 GCGAAGAAGA
Statistics
Matches: 887, Mismatches: 115, Indels: 37
0.85 0.11 0.04
Matches are distributed among these distances:
131 4 0.00
132 130 0.15
133 459 0.52
134 284 0.32
135 6 0.01
136 4 0.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.32
Consensus pattern (133 bp):
GAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATTGA
CGT
Found at i:37321268 original size:18 final size:19
Alignment explanation
Indices: 37321247--37321293 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
37321237 ATTTGTTAAA
37321247 TTAATATTATTTATT-ACC
1 TTAATATTATTTATTCACC
37321265 TTAA-ATATATTTTATTCACC
1 TTAATAT-TA-TTTATTCACC
37321285 -TAATATTAT
1 TTAATATTAT
37321294 GATTTTTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
17 2 0.08
18 7 0.28
19 11 0.44
20 5 0.20
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.53
Consensus pattern (19 bp):
TTAATATTATTTATTCACC
Found at i:37322251 original size:20 final size:19
Alignment explanation
Indices: 37322215--37322269 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
37322205 TTAATTTTTT
37322215 AAAATAAAAAATATTTAAA
1 AAAATAAAAAATATTTAAA
* *
37322234 AAAATTAAAATTATTTTAAA
1 AAAATAAAAAATA-TTTAAA
* * *
37322254 CATATAATAAATATTT
1 AAAATAAAAAATATTT
37322270 TTATTTTTTA
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAATAAAAAATATTTAAA
Found at i:37334614 original size:25 final size:24
Alignment explanation
Indices: 37334561--37334656 Score: 93
Period size: 25 Copynumber: 3.8 Consensus size: 24
37334551 ATGCTTATAT
* * *
37334561 GAGCACATAAACGGGAAGCTCAAGT
1 GAGC-CATTAACGGGAAGCTCCAGA
*
37334586 GAGCCATGTAACGGGAAGCTCCGGA
1 GAGCCAT-TAACGGGAAGCTCCAGA
* *
37334611 GAGCCATTAACGTGAAGCTCACAAA
1 GAGCCATTAACGGGAAGCTC-CAGA
*
37334636 GAGCCTTTAATCGGGAAGCTC
1 GAGCCATTAA-CGGGAAGCTC
37334657 ATAAAGAGCC
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
24 15 0.25
25 35 0.59
26 9 0.15
ACGTcount: A:0.33, C:0.23, G:0.28, T:0.16
Consensus pattern (24 bp):
GAGCCATTAACGGGAAGCTCCAGA
Found at i:37334662 original size:26 final size:25
Alignment explanation
Indices: 37334610--37334690 Score: 78
Period size: 26 Copynumber: 3.2 Consensus size: 25
37334600 GAAGCTCCGG
* *
37334610 AGAGCCATTAA-CGTGAAGCTCACAA
1 AGAGCC-TTAATCGGGAAGCTCATAA
37334635 AGAGCCTTTAATCGGGAAGCTCATAA
1 AGAGCC-TTAATCGGGAAGCTCATAA
*
37334661 AGAGCCATATATCGGGACA-CTCAT-A
1 AGAGCCTTA-ATCGGGA-AGCTCATAA
37334686 AGAGC
1 AGAGC
37334691 TGCGATGTGT
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
25 18 0.37
26 30 0.61
27 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (25 bp):
AGAGCCTTAATCGGGAAGCTCATAA
Found at i:37340631 original size:15 final size:15
Alignment explanation
Indices: 37340611--37340640 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37340601 GGCTGACTAT
37340611 TCTGATATATGTATA
1 TCTGATATATGTATA
*
37340626 TCTGATATTTGTATA
1 TCTGATATATGTATA
37340641 CAAGCATGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.13, T:0.50
Consensus pattern (15 bp):
TCTGATATATGTATA
Found at i:37343552 original size:49 final size:49
Alignment explanation
Indices: 37343484--37343583 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
37343474 TATTGGGTAC
37343484 AACTTCGGTGTTTATCACTCAATACTGTATGACACCGAAGGAGCTTACA
1 AACTTCGGTGTTTATCACTCAATACTGTATGACACCGAAGGAGCTTACA
*
37343533 AACTTCGGTGTTTATCACTCAATACTGTATGACACTGAAGGAGCTTACA
1 AACTTCGGTGTTTATCACTCAATACTGTATGACACCGAAGGAGCTTACA
37343582 AA
1 AA
37343584 GCTTAAGCCT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (49 bp):
AACTTCGGTGTTTATCACTCAATACTGTATGACACCGAAGGAGCTTACA
Found at i:37354746 original size:12 final size:13
Alignment explanation
Indices: 37354729--37354757 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
37354719 CTCATACATG
37354729 AATAAATAAA-GC
1 AATAAATAAATGC
37354741 AATAAATAAATGC
1 AATAAATAAATGC
37354754 AATA
1 AATA
37354758 GTTATATCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:37362628 original size:29 final size:29
Alignment explanation
Indices: 37362566--37362621 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
37362556 TTTAGTAATT
*
37362566 CAACTATAAAAGGTTATAAAATGGTCATC
1 CAACTATAAAAAGTTATAAAATGGTCATC
* *
37362595 CAACTGTAAAAAGTTATAAAATTGTCA
1 CAACTATAAAAAGTTATAAAATGGTCA
37362622 CTTAACTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.29
Consensus pattern (29 bp):
CAACTATAAAAAGTTATAAAATGGTCATC
Found at i:37363675 original size:22 final size:24
Alignment explanation
Indices: 37363631--37363678 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 24
37363621 AAATTTAGGG
*
37363631 TAATGAAATTTAATAAATTAAAAA
1 TAATGAAATTTAATAAATAAAAAA
*
37363655 TAATGATA-TTAA-AAATAAAAAA
1 TAATGAAATTTAATAAATAAAAAA
37363677 TA
1 TA
37363679 TAGAAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 11 0.50
23 4 0.18
24 7 0.32
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (24 bp):
TAATGAAATTTAATAAATAAAAAA
Found at i:37387170 original size:14 final size:14
Alignment explanation
Indices: 37387151--37387227 Score: 59
Period size: 14 Copynumber: 5.6 Consensus size: 14
37387141 CAATGTTCCA
37387151 TTTCATATATCTAT
1 TTTCATATATCTAT
* *
37387165 TTTCATATAACCA-
1 TTTCATATATCTAT
*
37387178 TTTCATTTATCTAT
1 TTTCATATATCTAT
* * *
37387192 TTCCATATAACCA-
1 TTTCATATATCTAT
** *
37387205 AATCATATATCTGT
1 TTTCATATATCTAT
37387219 TTTCATATA
1 TTTCATATA
37387228 ACTGATTCAT
Statistics
Matches: 44, Mismatches: 17, Indels: 4
0.68 0.26 0.06
Matches are distributed among these distances:
13 17 0.39
14 27 0.61
ACGTcount: A:0.32, C:0.18, G:0.01, T:0.48
Consensus pattern (14 bp):
TTTCATATATCTAT
Found at i:37387178 original size:27 final size:27
Alignment explanation
Indices: 37387148--37387229 Score: 119
Period size: 27 Copynumber: 3.0 Consensus size: 27
37387138 ACCCAATGTT
37387148 CCATTTCATATATCTATTTTCATATAA
1 CCATTTCATATATCTATTTTCATATAA
* *
37387175 CCATTTCATTTATCTATTTCCATATAA
1 CCATTTCATATATCTATTTTCATATAA
** *
37387202 CCAAATCATATATCTGTTTTCATATAA
1 CCATTTCATATATCTATTTTCATATAA
37387229 C
1 C
37387230 TGATTCATAT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.33, C:0.21, G:0.01, T:0.45
Consensus pattern (27 bp):
CCATTTCATATATCTATTTTCATATAA
Found at i:37387181 original size:13 final size:13
Alignment explanation
Indices: 37387148--37387250 Score: 64
Period size: 13 Copynumber: 7.7 Consensus size: 13
37387138 ACCCAATGTT
*
37387148 CCATTTCATATAT
1 CCATTTCATATAA
*
37387161 CTATTTTCATATAA
1 CCA-TTTCATATAA
* *
37387175 CCATTTCATTTAT
1 CCATTTCATATAA
*
37387188 CTATTTCCATATAA
1 CCATTT-CATATAA
** *
37387202 CCAAATCATATAT
1 CCATTTCATATAA
**
37387215 CTGTTTTCATATAA
1 C-CATTTCATATAA
*
37387229 CTGA-TTCATATAA
1 C-CATTTCATATAA
37387242 CCATTTCAT
1 CCATTTCAT
37387251 TTCTAAGTTT
Statistics
Matches: 67, Mismatches: 19, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
12 1 0.01
13 37 0.55
14 29 0.43
ACGTcount: A:0.33, C:0.20, G:0.02, T:0.45
Consensus pattern (13 bp):
CCATTTCATATAA
Found at i:37387237 original size:27 final size:26
Alignment explanation
Indices: 37387152--37387240 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 26
37387142 AATGTTCCAT
*
37387152 TTCATATATCTATTTTCATATAACCAT
1 TTCATATATCTATTTTCATATAA-CAA
* *
37387179 TTCATTTATCTATTTCCATATAACCAA
1 TTCATATATCTATTTTCATATAA-CAA
* * *
37387206 ATCATATATCTGTTTTCATATAACTGA
1 TTCATATATCTATTTTCATATAAC-AA
37387233 TTCATATA
1 TTCATATA
37387241 ACCATTTCAT
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.02
27 51 0.98
ACGTcount: A:0.34, C:0.18, G:0.02, T:0.46
Consensus pattern (26 bp):
TTCATATATCTATTTTCATATAACAA
Found at i:37391497 original size:43 final size:43
Alignment explanation
Indices: 37391428--37391551 Score: 155
Period size: 43 Copynumber: 2.9 Consensus size: 43
37391418 AGCTCGTACA
* *
37391428 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATA-CCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACA-AGCCG
* *
37391471 ATG-CTACTGTCCCAGACAG-GGTCTTACACGTAAACACAAGTCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAACACAAGCCG
*
37391514 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACA
37391552 TATCGAAATC
Statistics
Matches: 70, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
42 5 0.07
43 61 0.87
44 4 0.06
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACAAGCCG
Found at i:37392066 original size:11 final size:11
Alignment explanation
Indices: 37392050--37392075 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
37392040 AACCCTTGGA
37392050 TTTTTCTTTTC
1 TTTTTCTTTTC
37392061 TTTTTCTTTTC
1 TTTTTCTTTTC
37392072 TTTT
1 TTTT
37392076 ACATTCGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:37392164 original size:28 final size:28
Alignment explanation
Indices: 37392124--37392180 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
37392114 CTCCCTTTTT
37392124 TTTATTATAATAA-CTTTATAATATATTA
1 TTTATTATAATAACCTTTATAAT-TATTA
*
37392152 TTTATTATTATAACCTTTATAATTATTA
1 TTTATTATAATAACCTTTATAATTATTA
37392180 T
1 T
37392181 AAAACTATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 18 0.67
29 9 0.33
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTATTATAATAACCTTTATAATTATTA
Found at i:37398694 original size:76 final size:76
Alignment explanation
Indices: 37398568--37398719 Score: 295
Period size: 76 Copynumber: 2.0 Consensus size: 76
37398558 ATAAGATGAG
37398568 CCATTTTCGCATGGCCTTTTATATACATGTTCCAAAACTAACCAAAAACATAAGCAAGCCTATAC
1 CCATTTTCGCATGGCCTTTTATATACATGTTCCAAAACTAACCAAAAACATAAGCAAGCCTATAC
37398633 ATGCCATAATA
66 ATGCCATAATA
*
37398644 CCATTTTCGCATGGCCTTTTATATACATGTTCCAAAACTAACCAAGAACATAAGCAAGCCTATAC
1 CCATTTTCGCATGGCCTTTTATATACATGTTCCAAAACTAACCAAAAACATAAGCAAGCCTATAC
37398709 ATGCCATAATA
66 ATGCCATAATA
37398720 TCGAGTTCAA
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 75 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.28
Consensus pattern (76 bp):
CCATTTTCGCATGGCCTTTTATATACATGTTCCAAAACTAACCAAAAACATAAGCAAGCCTATAC
ATGCCATAATA
Found at i:37399371 original size:43 final size:43
Alignment explanation
Indices: 37399262--37399387 Score: 141
Period size: 43 Copynumber: 2.9 Consensus size: 43
37399252 AGCTCGTACA
* *
37399262 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATACCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACATACCG
* *
37399305 AT-CCTACTGTCCCAGACAG-GGTCTTACACGTAAACACA-AGTCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAACACATA-CCG
* * *
37399348 ATGCCAACGTCCTAGACGTGGTCTTACACGAAAATACATA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACATA
37399388 TCAGAATCCT
Statistics
Matches: 69, Mismatches: 8, Indels: 11
0.78 0.09 0.12
Matches are distributed among these distances:
42 6 0.09
43 57 0.83
44 6 0.09
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACATACCG
Found at i:37400302 original size:28 final size:28
Alignment explanation
Indices: 37400262--37400318 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
37400252 TCTCCCTTTT
37400262 TTTATTATAATAA-CTTTATAATATATTA
1 TTTATTATAATAACCTTTATAAT-TATTA
*
37400290 TTTATTATTATAACCTTTATAATTATTA
1 TTTATTATAATAACCTTTATAATTATTA
37400318 T
1 T
37400319 AAAAACTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 18 0.67
29 9 0.33
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTATTATAATAACCTTTATAATTATTA
Found at i:37407642 original size:13 final size:13
Alignment explanation
Indices: 37407624--37407648 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37407614 TAATGGTATA
37407624 TTGAATCCATGAT
1 TTGAATCCATGAT
37407637 TTGAATCCATGA
1 TTGAATCCATGA
37407649 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:37409219 original size:47 final size:47
Alignment explanation
Indices: 37409081--37409490 Score: 631
Period size: 47 Copynumber: 8.6 Consensus size: 47
37409071 TTATTCATTG
37409081 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
37409128 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
37409177 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
37409224 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
37409271 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGCT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
37409320 GAATGTGGAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
37409369 GAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * * *
37409416 GAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
37409463 GGATGTGAAAGTGTATAAATGTGATAAG
1 GAATGTGAAAGTGTATATATGTGATAAG
37409491 TCCCGAAGGG
Statistics
Matches: 335, Mismatches: 24, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
47 199 0.59
49 136 0.41
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:37409290 original size:96 final size:95
Alignment explanation
Indices: 37409081--37409490 Score: 635
Period size: 96 Copynumber: 4.3 Consensus size: 95
37409071 TTATTCATTG
37409081 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATAT
* * *
37409146 ATATGTGATAAGGCCTAATGGTCGATGTGAT
65 ATATGTGATAAGGCCGAATGGCCAATGTGAT
*
37409177 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATA
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATA
37409241 TATGTGATAAGGCCGAATGGCCAATGTGAT
66 TATGTGATAAGGCCGAATGGCCAATGTGAT
* *
37409271 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGCTGAATGTGGAAGTGTAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-AT
* *
37409336 ATATATGTGATAAGGCCTAATGGCCGATGTGAT
63 ATATATGTGATAAGGCCGAATGGCCAATGTGAT
*
37409369 GAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATA
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATA
* * * *
37409433 TATGTGACAGGGCCGAGTGGCCAACGTGAT
66 TATGTGATAAGGCCGAATGGCCAATGTGAT
* *
37409463 GGATGTGAAAGTGTATAAATGTGATAAG
1 GAATGTGAAAGTGTATATATGTGATAAG
37409491 TCCCGAAGGG
Statistics
Matches: 289, Mismatches: 21, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
94 97 0.34
96 147 0.51
98 45 0.16
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (95 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATA
TATGTGATAAGGCCGAATGGCCAATGTGAT
Found at i:37409313 original size:192 final size:192
Alignment explanation
Indices: 37409081--37409490 Score: 702
Period size: 192 Copynumber: 2.2 Consensus size: 192
37409071 TTATTCATTG
37409081 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
37409144 ATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
66 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* *
37409209 AATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
131 AATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGAT
* *
37409271 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGCTGAATGTGGAAGTGTAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
37409336 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCT
66 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * *
37409401 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGAT
131 AATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGAT
*
37409463 GGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GAATGTGAAAGTGTATATATATGTGATAAG
37409491 TCCCGAAGGG
Statistics
Matches: 208, Mismatches: 10, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
190 23 0.11
191 1 0.00
192 184 0.88
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (192 bp):
GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGAT
Found at i:37411781 original size:40 final size:40
Alignment explanation
Indices: 37411716--37411916 Score: 190
Period size: 40 Copynumber: 5.0 Consensus size: 40
37411706 AGGTCTCGAC
* * *
37411716 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCTCAAAGAGCATTCGTGCTAGT
*
37411755 GATGTATCCGGGCTATGTCTCAAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCTCAAAGAGCATTCGTGCTAGT
*
37411795 GATGTATCCGGACTAAGT-TCCAAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCT-CAAAGAGCATTCGTGCTAGT
* * ** * * * *
37411835 GATATATCCGTGCTAAACCCCGAAGAGCATTTGTGCTGGT
1 GATGTATCCGGGCTAAGTCTCAAAGAGCATTCGTGCTAGT
* * * * * * * *
37411875 GTTATATCCGGGCTAGGTCCCGAAGAGTAATCATGCTAGT
1 GATGTATCCGGGCTAAGTCTCAAAGAGCATTCGTGCTAGT
37411915 GA
1 GA
37411917 CGTGTATTCG
Statistics
Matches: 133, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 5 0.04
40 128 0.96
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCTCAAAGAGCATTCGTGCTAGT
Found at i:37411861 original size:80 final size:80
Alignment explanation
Indices: 37411716--37411916 Score: 215
Period size: 80 Copynumber: 2.5 Consensus size: 80
37411706 AGGTCTCGAC
* * * *** *
37411716 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTATGTCTCAAAG
1 GATGTATCCGGACTAAGTCCCAAAGAGCATTCATGCTAGTGATATATCCGGGCTAAACCCCAAAG
37411780 AGCATTCGTGCTAGT
66 AGCATTCGTGCTAGT
* * * *
37411795 GATGTATCCGGACTAAGTTCCAAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAG
1 GATGTATCCGGACTAAGTCCCAAAGAGCATTCATGCTAGTGATATATCCGGGCTAAACCCCAAAG
* *
37411860 AGCATTTGTGCTGGT
66 AGCATTCGTGCTAGT
* * * * * * *
37411875 GTTATATCCGGGCTAGGTCCCGAAGAGTAATCATGCTAGTGA
1 GATGTATCCGGACTAAGTCCCAAAGAGCATTCATGCTAGTGA
37411917 CGTGTATTCG
Statistics
Matches: 99, Mismatches: 22, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
79 4 0.04
80 95 0.96
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
GATGTATCCGGACTAAGTCCCAAAGAGCATTCATGCTAGTGATATATCCGGGCTAAACCCCAAAG
AGCATTCGTGCTAGT
Found at i:37413896 original size:13 final size:13
Alignment explanation
Indices: 37413878--37413902 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37413868 TAATGGTATA
37413878 TTGAATCCATGAT
1 TTGAATCCATGAT
37413891 TTGAATCCATGA
1 TTGAATCCATGA
37413903 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:37415519 original size:47 final size:47
Alignment explanation
Indices: 37415334--37415792 Score: 693
Period size: 47 Copynumber: 9.6 Consensus size: 47
37415324 TTATTCATTG
* *
37415334 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
37415381 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
37415430 GAATATGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
37415479 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
37415526 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
37415573 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
37415622 GAATGTGGAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
37415671 GAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * * *
37415718 GAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
37415765 GGATGTGAAAGTGTATAAATGTGATAAG
1 GAATGTGAAAGTGTATATATGTGATAAG
37415793 TCCCGAAGGG
Statistics
Matches: 382, Mismatches: 26, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 200 0.52
49 182 0.48
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:37415571 original size:192 final size:192
Alignment explanation
Indices: 37415334--37415792 Score: 814
Period size: 192 Copynumber: 2.4 Consensus size: 192
37415324 TTATTCATTG
37415334 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
*
37415399 ATATGTGATAAGGCCTAATGGCTGATGTGATGAATATGAAAGTGTATATATATGTGATAAGGCCT
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATATGTGATAAGGCCT
37415464 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
131 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
37415526 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* *
37415591 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGATAAGGCCT
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATATGTGATAAGGCCT
* *
37415656 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGAT
131 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
* * * * *
37415718 GAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
37415782 A-ATGTGATAAG
66 ATATGTGATAAG
37415793 TCCCGAAGGG
Statistics
Matches: 257, Mismatches: 10, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
190 10 0.04
191 1 0.00
192 246 0.96
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (192 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
Found at i:37417769 original size:22 final size:25
Alignment explanation
Indices: 37417723--37417777 Score: 64
Period size: 22 Copynumber: 2.4 Consensus size: 25
37417713 TATTATAGTA
*
37417723 TTTAATAGTATTTGTAATATTTATT
1 TTTAATAGTAGTTGTAATATTTATT
37417748 TTTAATAGT-GTT-TAA-ATTTATT
1 TTTAATAGTAGTTGTAATATTTATT
*
37417770 ATT-ATAGT
1 TTTAATAGT
37417778 TTAAAATGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 5 0.18
22 9 0.32
23 3 0.11
24 2 0.07
25 9 0.32
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (25 bp):
TTTAATAGTAGTTGTAATATTTATT
Found at i:37418114 original size:17 final size:19
Alignment explanation
Indices: 37418094--37418128 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
37418084 ATTTTAATAT
37418094 ATGTA-TAT-ATTTATAAA
1 ATGTATTATAATTTATAAA
37418111 ATGTATTATAATTTATAA
1 ATGTATTATAATTTATAA
37418129 TTTATAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 3 0.19
19 8 0.50
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (19 bp):
ATGTATTATAATTTATAAA
Found at i:37429474 original size:44 final size:44
Alignment explanation
Indices: 37429398--37429543 Score: 184
Period size: 44 Copynumber: 3.3 Consensus size: 44
37429388 CCTGAGCAAT
* * * *
37429398 AGCGGAGCAGATCGAAGACGGTGAATCTTATCTCCCTAAGATTAC
1 AGCGGAGCAGATTGAAGCCAGT-AATCCTATCTCCCTAAGATTAC
*
37429443 AACGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTAC
1 AGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTAC
* * * * *
37429487 AGTGGAGCAGACTGAAGCCAATAATCCTATTTCCCTGAGATTAC
1 AGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTAC
*
37429531 AGTGGAGCAGATT
1 AGCGGAGCAGATT
37429544 AAAATAAAGG
Statistics
Matches: 89, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
44 71 0.80
45 18 0.20
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (44 bp):
AGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTAC
Found at i:37429641 original size:263 final size:262
Alignment explanation
Indices: 37429217--37429764 Score: 810
Period size: 263 Copynumber: 2.1 Consensus size: 262
37429207 TATCCCCTTC
** * * **
37429217 AGATTACAGCAGAGGAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAGTGGATTA
1 AGATTACAGTGGAGCAGA-TGAAGCCAATAATCCTATTTCCCTGAGATTACAGTGGAGCAGATTA
* * *
37429282 AAATAAAAGATTTTATCTCTCTGAAGTTACAGTAGAGTAGATTGCATAAGGTCTTATCCCCCTGA
65 AAATAAAAGATCTTATCTCTATGAAGTTACAGTAGAGTAGATCGCATAAGGTCTTATCCCCCTGA
* * *
37429347 GCTTACAGTGGAATAGACCGAAGAGTTCCAGATCTTGTCTCCCTGAGCAATAGCGGAGC-AGATC
130 GCTTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGCGGAGCTA-ATC
* *
37429411 GAAGACGGTGAATCTTATCTCCCTAAGATTACAACGGAGCAGATTGAAGCCAGTAATCCTATCTC
194 GAAAACGGTGAATCTTATCTCCCTAAGATTACAACGGAGCAGATTGAAGCCAGCAATCCTATCTC
37429476 CCTA
259 CCTA
37429480 AGATTACAGTGGAGCAGACTGAAGCCAATAATCCTATTTCCCTGAGATTACAGTGGAGCAGATTA
1 AGATTACAGTGGAGCAGA-TGAAGCCAATAATCCTATTTCCCTGAGATTACAGTGGAGCAGATTA
* * * *
37429545 AAATAAAGGATCTTATCTCTATGAAGTTATAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGA
65 AAATAAAAGATCTTATCTCTATGAAGTTACAGTAGAGTAGATCGCATAAGGTCTTATCCCCCTGA
* * *
37429610 GGTTACAGTGGAATAGACCTAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATCG
130 GCTTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGCGGAGCTAATCG
* * * * *
37429675 AAAATGGTGAATCTTATCTCCCTGAGATTATAACGGAGCAGATTGAAGCCAGCAATCCTATTTTC
195 AAAACGGTGAATCTTATCTCCCTAAGATTACAACGGAGCAGATTGAAGCCAGCAATCCTATCTCC
*
37429740 CTT
260 CTA
*
37429743 ATATTACAGTGGAGCAGATGAA
1 AGATTACAGTGGAGCAGATGAA
37429765 AATAAAGGAT
Statistics
Matches: 255, Mismatches: 29, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
262 4 0.02
263 250 0.98
264 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (262 bp):
AGATTACAGTGGAGCAGATGAAGCCAATAATCCTATTTCCCTGAGATTACAGTGGAGCAGATTAA
AATAAAAGATCTTATCTCTATGAAGTTACAGTAGAGTAGATCGCATAAGGTCTTATCCCCCTGAG
CTTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGCGGAGCTAATCGA
AAACGGTGAATCTTATCTCCCTAAGATTACAACGGAGCAGATTGAAGCCAGCAATCCTATCTCCC
TA
Found at i:37429647 original size:219 final size:219
Alignment explanation
Indices: 37429465--37430196 Score: 950
Period size: 219 Copynumber: 3.3 Consensus size: 219
37429455 TGAAGCCAGT
* * *
37429465 AATCCTATCTCCCTAAGATTACAGTGGAGCAGACTGAAGCCAATAATCCTATTTCCCTGAGATTA
1 AATCCTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* *
37429530 CAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTATGAAGTTATAGTAGAGTAGATCGCATCAG
66 CAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
*
37429595 GTCTTATCTCCCTGAGGTTACAGTGGAATAGACCTAAGAATTCCAGATCTTATCTCCCTAAGCAA
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCTAAGAATTCCAGATCTTATCTCCCTAAGCAA
*
37429660 TAGTGGAGCTAATCGAAAATGGTG
196 TAGTGGAGCTAATCGAAAACGGTG
* * * * * * * *
37429684 AATCTTATCTCCCTGAGATTATAACGGAGCAGATTGAAGCCAGCAATCCTATTTTCCTTATATTA
1 AATCCTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * * *
37429749 CAGTGGAGCAGATGAAAATAAAGGATCTTATCTCCCTAAAGTTACAGTAGAGTAGATCACATCAG
66 CAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* * * *
37429814 GTTTTATCTCCCTGAGATTACAGTGGAATAGA-CTCAATAAATCCAGATATTATCTCCCTAAGCA
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCT-AAGAATTCCAGATCTTATCTCCCTAAGCA
** *
37429878 ATAGTGGAGCTAATAAAAAATGGTG
195 ATAGTGGAGCTAATCGAAAACGGTG
* * * * * *
37429903 AAT-CTGATCTCCCTGAGATTATAGCGGCGCAGATT-AATGCTACTAATCCTATTACCCTGAGAT
1 AATCCT-ATCTCCCTAAGATTACAGCGGAGCAGATTGAA-GCCAGTAATCCTATTTCCCTGAGAT
* * * *
37429966 TATAGTGGAACGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
64 TACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
* * * * * * *
37430031 AGGTCTTATCTCCCTAAGATAACTGTGGAATAGACCGAAGAGTTCCAGATCTTGTCTCCCTGAGC
129 AGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCTAAGAATTCCAGATCTTATCTCCCTAAGC
*
37430096 AATAGTGGAGC-AGATCGAAGACGGTG
194 AATAGTGGAGCTA-ATCGAAAACGGTG
* * * * *
37430122 AATCTTATCTCCATAAGATTACAGCGGAGCAGATTCAAGCCAGTAATCCTATCTGCCTGAGATTA
1 AATCCTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
*
37430187 CAGTAGAGCA
66 CAGTGGAGCA
37430197 AATTGAAGCC
Statistics
Matches: 435, Mismatches: 71, Indels: 14
0.84 0.14 0.03
Matches are distributed among these distances:
218 6 0.01
219 425 0.98
220 4 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (219 bp):
AATCCTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
CAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
GTCTTATCTCCCTGAGATTACAGTGGAATAGACCTAAGAATTCCAGATCTTATCTCCCTAAGCAA
TAGTGGAGCTAATCGAAAACGGTG
Found at i:37430129 original size:482 final size:481
Alignment explanation
Indices: 37429217--37430527 Score: 1243
Period size: 482 Copynumber: 2.7 Consensus size: 481
37429207 TATCCCCTTC
* * * * * ** *
37429217 AGATTACAGCAGAGGAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAGTGGATTA
1 AGATTACAACAGAGCAAATTGAAGCCAGCAATCATATTTCCCTGAGATTACAGTGGAGCAGATGA
* * * * ** * *
37429282 AAATAAAAGATTTTATCTCTCTGAAGTTACAGTAGAGTAGATTGCATAAGGTCTTATCCCCCTGA
66 AAATAAAGGATCTTATCTCCCTAAAGTTACAGTAGAGTAGATCACATCAGGTCTTATCTCCCTGA
* * ** * * * * **
37429347 GCTTACAGTGGAATAGACCGAAGAGTTCCAGATCTTGTCTCCCTGAGCAATAGCGGAGCAGATCG
131 GATTACAGTGGAATAGACCGAATAAATCCAGATATTATCTCCCTAAGCAATAGTGGAGCAGATAA
* ** * * * *
37429412 AAGACGGTGAATCTTATCTCCCTAAGATTACAACGGAGCAGATTGAAGCCAGTAATCCTATCT-C
196 AAAATAGTGAATCTGATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCACTAATCCTAT-TAC
** * * * *** ** ** * * * *
37429476 CCTAAGATTACAGTGGAGCAGACTGAAGCCAATAATCCTATTTCCCTG-AGATTACAGTGGAGCA
260 CCTTGGATTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAG-TTACAGTAGAGTA
*** * * * ** * * * * * *
37429540 GATTAAAATAAAGGATCTTATCTCTATGAAG-TTA-TAGTAGAGTAGATCG--CA--T-CAGGTC
324 GA-TCGCAT-CAGG-TCTGAACTCCCT-AAGATAACT-GTGGAATAGACCGAAGAGTTCCAGATC
* ** * ** * * ** * * *
37429598 TTATCTCCCTGAGGTTACAGTGGAATAGACCTAAGA-ATTCCAGATCTTATCTCCCTAAGCA-AT
384 TTGTCTCCCTGA-GCAATAGTGGAGCAGATCGAAGACGGT-GA-ATCTTATCTCCATAAG-ATAC
* ** *
37429661 AGTGGAGCTA-A-TCGAAAATGGTGAATCTTATCTCCCTG
445 AGCGGAGC-AGATTC-AAAACAGT-AATCCTATCTCCCTG
* * * * * * *
37429699 AGATTATAACGGAGCAGATTGAAGCCAGCAATCCTATTTTCCTTATATTACAGTGGAGCAGATGA
1 AGATTACAACAGAGCAAATTGAAGCCAGCAATCATATTTCCCTGAGATTACAGTGGAGCAGATGA
*
37429764 AAATAAAGGATCTTATCTCCCTAAAGTTACAGTAGAGTAGATCACATCAGGTTTTATCTCCCTGA
66 AAATAAAGGATCTTATCTCCCTAAAGTTACAGTAGAGTAGATCACATCAGGTCTTATCTCCCTGA
37429829 GATTACAGTGGAATAGACTC-AATAAATCCAGATATTATCTCCCTAAGCAATAGTGGAGCTA-AT
131 GATTACAGTGGAATAGAC-CGAATAAATCCAGATATTATCTCCCTAAGCAATAGTGGAGC-AGAT
* * * * * *
37429892 AAAAAATGGTGAATCTGATCTCCCTGAGATTATAGCGGCGCAGATT-AATGCTACTAATCCTATT
194 AAAAAATAGTGAATCTGATCTCCATAAGATTACAGCGGAGCAGATTGAA-GCCACTAATCCTATT
* *
37429956 ACCC-TGAGATTATAGTGGAACGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAG
258 ACCCTTG-GATTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAG
* *
37430020 TAGATCGCATCAGGTCTTATCTCCCTAAGATAACTGTGGAATAGACCGAAGAGTTCCAGATCTTG
322 TAGATCGCATCAGGTCTGAACTCCCTAAGATAACTGTGGAATAGACCGAAGAGTTCCAGATCTTG
37430085 TCTCCCTGAGCAATAGTGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGA
387 TCTCCCTGAGCAATAGTGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGA-TACAGCGGA
** *
37430150 GCAGATTCAAGCCAGTAATCCTATCTGCCTG
451 GCAGATTCAAAACAGTAATCCTATCTCCCTG
** * *
37430181 AGATTACAGTAGAGCAAATTGAAGCCAGTAATCATATTTCCCTGAGATTACAGTGGAGCGGATGA
1 AGATTACAACAGAGCAAATTGAAGCCAGCAATCATATTTCCCTGAGATTACAGTGGAGCAGATGA
* *
37430246 AAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGA
66 AAATAAAGGATCTTATCTCCCTAAAGTTACAGTAGAGTAGATCACATCAGGTCTTATCTCCCTGA
** * * * **
37430311 GATTACAGTGGAATAGACCGAATAGTTCCAGATCTTGTCTCCCTGAGCAATAGTGGAGCAGATCG
131 GATTACAGTGGAATAGACCGAATAAATCCAGATATTATCTCCCTAAGCAATAGTGGAGCAGATAA
* ** * *
37430376 AAGATAGTGAATCTTTTCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCC
196 AAAATAGTGAATCTGATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCACTAATCCTATTACC
* *
37430441 CTTGGATTACAGTGGAACAGATTAAAATAAAGGATTTTATCTCTCTGAAGTTACTGTAGAGTAGA
261 CTTGGATTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGA
37430506 TCGCATCAGGTCTGAACTCCCT
326 TCGCATCAGGTCTGAACTCCCT
37430528 GTGTAACACC
Statistics
Matches: 680, Mismatches: 127, Indels: 44
0.80 0.15 0.05
Matches are distributed among these distances:
478 3 0.00
479 22 0.03
480 4 0.01
481 10 0.01
482 583 0.86
483 39 0.06
484 19 0.03
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (481 bp):
AGATTACAACAGAGCAAATTGAAGCCAGCAATCATATTTCCCTGAGATTACAGTGGAGCAGATGA
AAATAAAGGATCTTATCTCCCTAAAGTTACAGTAGAGTAGATCACATCAGGTCTTATCTCCCTGA
GATTACAGTGGAATAGACCGAATAAATCCAGATATTATCTCCCTAAGCAATAGTGGAGCAGATAA
AAAATAGTGAATCTGATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCACTAATCCTATTACC
CTTGGATTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGA
TCGCATCAGGTCTGAACTCCCTAAGATAACTGTGGAATAGACCGAAGAGTTCCAGATCTTGTCTC
CCTGAGCAATAGTGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATACAGCGGAGCAGA
TTCAAAACAGTAATCCTATCTCCCTG
Found at i:37430175 original size:44 final size:43
Alignment explanation
Indices: 37430122--37430239 Score: 137
Period size: 44 Copynumber: 2.7 Consensus size: 43
37430112 GAAGACGGTG
* * * *
37430122 AATCTTATCTCCATAAGATTACAGCGGAGCAGATTCAAGCCAGT
1 AATCATATCTCC-TGAGATTACAGTGGAGCAAATTCAAGCCAGT
* * *
37430166 AATCCTATCTGCCTGAGATTACAGTAGAGCAAATTGAAGCCAGT
1 AATCATATCT-CCTGAGATTACAGTGGAGCAAATTCAAGCCAGT
*
37430210 AATCATATTTCCCTGAGATTACAGTGGAGC
1 AATCATATCT-CCTGAGATTACAGTGGAGC
37430240 GGATGAAAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
44 61 0.97
45 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (43 bp):
AATCATATCTCCTGAGATTACAGTGGAGCAAATTCAAGCCAGT
Found at i:37430267 original size:263 final size:263
Alignment explanation
Indices: 37429946--37430453 Score: 847
Period size: 263 Copynumber: 1.9 Consensus size: 263
37429936 TTAATGCTAC
* * * *
37429946 TAATCCTATTACCCTGAGATTATAGTGGAACGGATTAAAATAAAGGATATTATCTCTCTGAAGTT
1 TAATCATATTACCCTGAGATTACAGTGGAACGGATGAAAATAAAGGATATTATCTCTCTAAAGTT
*
37430011 ACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTAAGATAACTGTGGAATAGACCGAAGAGTTC
66 ACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTAAGATAACAGTGGAATAGACCGAAGAGTTC
*
37430076 CAGATCTTGTCTCCCTGAGCAATAGTGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGAT
131 CAGATCTTGTCTCCCTGAGCAATAGTGGAGCAGATCGAAGACAGTGAATCTTATCTCCATAAGAT
*
37430141 TACAGCGGAGCAGATTCAAGCCAGTAATCCTATCTGCC-TGAGATTACAGTAGAGCAAATTGAAG
196 TACAGCGGAGCAGATTCAAGCCAGTAATCCTATCTCCCTTG-GATTACAGTAGAGCAAATTGAAG
37430205 CCAG
260 CCAG
* * *
37430209 TAATCATATTTCCCTGAGATTACAGTGGAGCGGATGAAAATAAAGGATCTTATCTCTCTAAAGTT
1 TAATCATATTACCCTGAGATTACAGTGGAACGGATGAAAATAAAGGATATTATCTCTCTAAAGTT
* * *
37430274 ACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAATAGTTC
66 ACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTAAGATAACAGTGGAATAGACCGAAGAGTTC
* *
37430339 CAGATCTTGTCTCCCTGAGCAATAGTGGAGCAGATCGAAGATAGTGAATCTTTTCTCCATAAGAT
131 CAGATCTTGTCTCCCTGAGCAATAGTGGAGCAGATCGAAGACAGTGAATCTTATCTCCATAAGAT
* *
37430404 TACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTGGATTACAGT
196 TACAGCGGAGCAGATTCAAGCCAGTAATCCTATCTCCCTTGGATTACAGT
37430454 GGAACAGATT
Statistics
Matches: 227, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
263 225 0.99
264 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (263 bp):
TAATCATATTACCCTGAGATTACAGTGGAACGGATGAAAATAAAGGATATTATCTCTCTAAAGTT
ACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTAAGATAACAGTGGAATAGACCGAAGAGTTC
CAGATCTTGTCTCCCTGAGCAATAGTGGAGCAGATCGAAGACAGTGAATCTTATCTCCATAAGAT
TACAGCGGAGCAGATTCAAGCCAGTAATCCTATCTCCCTTGGATTACAGTAGAGCAAATTGAAGC
CAG
Found at i:37430515 original size:701 final size:701
Alignment explanation
Indices: 37429245--37430516 Score: 2051
Period size: 701 Copynumber: 1.8 Consensus size: 701
37429235 TTGAAGCCAG
* ** *
37429245 TAATCCTATTTCCCTGAGATTACAGTGGAGTGGATTAAAATAAAAGATTTTATCTCTCTGAAGTT
1 TAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAAAGATATTATCTCTCTGAAGTT
* * * *
37429310 ACAGTAGAGTAGATTGCATAAGGTCTTATCCCCCTGAGCTTACAGTGGAATAGACCGAAGAGTTC
66 ACAGTAGAGTAGATCGCATAAGGTCTTATCCCCCTAAGATAACAGTGGAATAGACCGAAGAGTTC
*
37429375 CAGATCTTGTCTCCCTGAGCAATAGCGGAGCAGATCGAAGACGGTGAATCTTATCTCCCTAAGAT
131 CAGATCTTGTCTCCCTGAGCAATAGCGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGAT
* * *
37429440 TACAACGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTACAGTGGAGCAGACTGAAGC
196 TACAACGGAGCAGATTCAAGCCAGTAATCCTATCTCCCTAAGATTACAGTAGAGCAAACTGAAGC
* * *
37429505 CAATAATCCTATTTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTATGAA
261 CAATAATCATATTTCCCTGAGATTACAGTGGAGCAGATGAAAATAAAGGATCTTATCTCTATAAA
* * *
37429570 GTTATAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAATAGACCTAAGAA
326 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAA
* * *
37429635 TTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGA
391 TTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATCGAAAATAGTGAATCTTATCTCCATAA
* * * *
37429700 GATTATAACGGAGCAGATTGAAGCCAGCAATCCTATTTTCCTTATATTACAGTGGAGCAGATGAA
456 GATTACAACGGAGCAGATTGAAGCCAGCAATCCTATTTCCCTTAGATTACAGTGGAACAGATGAA
37429765 AATAAAGGATCTTATCTCCCTAAAGTTACAGTAGAGTAGATCACATCAGGTTTTATCTCCCTGAG
521 AATAAAGGATCTTATCTCCCTAAAGTTACAGTAGAGTAGATCACATCAGGTTTTATCTCCCTGAG
37429830 ATTACAGTGGAATAGACTCAATAAATCCAGATATTATCTCCCTAAGCAATAGTGGAGCTAATAAA
586 ATTACAGTGGAATAGACTCAATAAATCCAGATATTATCTCCCTAAGCAATAGTGGAGCTAATAAA
37429895 AAATGGTGAATCTGATCTCCCTGAGATTATAGCGGCGCAGATTAATGCTAC
651 AAATGGTGAATCTGATCTCCCTGAGATTATAGCGGCGCAGATTAATGCTAC
* *
37429946 TAATCCTATTACCCTGAGATTATAGTGGAACGGATTAAAATAAAGGATATTATCTCTCTGAAGTT
1 TAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAAAGATATTATCTCTCTGAAGTT
* * *
37430011 ACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTAAGATAACTGTGGAATAGACCGAAGAGTTC
66 ACAGTAGAGTAGATCGCATAAGGTCTTATCCCCCTAAGATAACAGTGGAATAGACCGAAGAGTTC
*
37430076 CAGATCTTGTCTCCCTGAGCAATAGTGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGAT
131 CAGATCTTGTCTCCCTGAGCAATAGCGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGAT
* * * *
37430141 TACAGCGGAGCAGATTCAAGCCAGTAATCCTATCTGCCTGAGATTACAGTAGAGCAAATTGAAGC
196 TACAACGGAGCAGATTCAAGCCAGTAATCCTATCTCCCTAAGATTACAGTAGAGCAAACTGAAGC
* * *
37430206 CAGTAATCATATTTCCCTGAGATTACAGTGGAGCGGATGAAAATAAAGGATCTTATCTCTCTAAA
261 CAATAATCATATTTCCCTGAGATTACAGTGGAGCAGATGAAAATAAAGGATCTTATCTCTATAAA
* *
37430271 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAATAG
326 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAA
* * * *
37430336 TTCCAGATCTTGTCTCCCTGAGCAATAGTGGAGC-AGATCGAAGATAGTGAATCTTTTCTCCATA
391 TTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTA-ATCGAAAATAGTGAATCTTATCTCCATA
* * * *
37430400 AGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTGGATTACAGTGGAACAGATTA
455 AGATTACAACGGAGCAGATTGAAGCCAGCAATCCTATTTCCCTTAGATTACAGTGGAACAGATGA
* * * * *
37430465 AAATAAAGGATTTTATCTCTCTGAAGTTACTGTAGAGTAGATCGCATCAGGT
520 AAATAAAGGATCTTATCTCCCTAAAGTTACAGTAGAGTAGATCACATCAGGT
37430517 CTGAACTCCC
Statistics
Matches: 517, Mismatches: 53, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
700 1 0.00
701 516 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (701 bp):
TAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAAAGATATTATCTCTCTGAAGTT
ACAGTAGAGTAGATCGCATAAGGTCTTATCCCCCTAAGATAACAGTGGAATAGACCGAAGAGTTC
CAGATCTTGTCTCCCTGAGCAATAGCGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGAT
TACAACGGAGCAGATTCAAGCCAGTAATCCTATCTCCCTAAGATTACAGTAGAGCAAACTGAAGC
CAATAATCATATTTCCCTGAGATTACAGTGGAGCAGATGAAAATAAAGGATCTTATCTCTATAAA
GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAA
TTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATCGAAAATAGTGAATCTTATCTCCATAA
GATTACAACGGAGCAGATTGAAGCCAGCAATCCTATTTCCCTTAGATTACAGTGGAACAGATGAA
AATAAAGGATCTTATCTCCCTAAAGTTACAGTAGAGTAGATCACATCAGGTTTTATCTCCCTGAG
ATTACAGTGGAATAGACTCAATAAATCCAGATATTATCTCCCTAAGCAATAGTGGAGCTAATAAA
AAATGGTGAATCTGATCTCCCTGAGATTATAGCGGCGCAGATTAATGCTAC
Found at i:37431960 original size:40 final size:40
Alignment explanation
Indices: 37431926--37432196 Score: 427
Period size: 40 Copynumber: 6.8 Consensus size: 40
37431916 ATAACCACAA
* * * *
37431926 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
37431966 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
37432006 GCTCAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
37432046 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
*
37432088 GCACAAATGCCTTCGGGTCTT-GCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
37432127 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
37432167 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
37432197 GTATTCAAAT
Statistics
Matches: 215, Mismatches: 13, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
39 27 0.13
40 149 0.69
41 11 0.05
42 28 0.13
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:37432148 original size:121 final size:121
Alignment explanation
Indices: 37431926--37432204 Score: 454
Period size: 121 Copynumber: 2.3 Consensus size: 121
37431916 ATAACCACAA
* * * * *
37431926 GCACAATTGCCTTCGGGTCTTAACCCGGGTATA-ACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATTCAACTCGCACAAATGCCTTCGGGTCTTAGC
* *
37431990 CCGGATATATCAACTTGCTCAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
37432046 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTT-G
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAT-TCAACTCGCACAAATGCCTTCGGGTCTTAG
*
37432110 CCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
65 CCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
37432167 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTATTCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATTCAA
37432205 ATGCTCATGC
Statistics
Matches: 148, Mismatches: 9, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
120 34 0.23
121 88 0.59
122 26 0.18
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (121 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATTCAACTCGCACAAATGCCTTCGGGTCTTAGC
CCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:37440422 original size:40 final size:40
Alignment explanation
Indices: 37440370--37440599 Score: 388
Period size: 40 Copynumber: 5.8 Consensus size: 40
37440360 ATAACCACAA
* * * *
37440370 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
37440410 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
37440450 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
37440490 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
37440530 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
37440570 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
37440600 GTATTCAAAT
Statistics
Matches: 179, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 179 1.00
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:37443285 original size:45 final size:42
Alignment explanation
Indices: 37443181--37443301 Score: 122
Period size: 45 Copynumber: 2.8 Consensus size: 42
37443171 AGGGAATATA
* * * *
37443181 AGGATTACTTGCTTCAATT-TTCTCGC-GTAATCTCAGAGAGAT
1 AGGATTACTGGCTTCAATTCTGCCCGCTGTAATC-C-GGGAGAT
*
37443223 AGGATTACTGGTTTCAA-TCTGCTCCGCTGTCAATCCGGGAGAT
1 AGGATTACTGGCTTCAATTCTGC-CCGCTGT-AATCCGGGAGAT
37443266 AGGATTTAACTGGCTTCAATTCTGCCCGCTGTAATC
1 AGGA-TT-ACTGGCTTCAATTCTGCCCGCTGTAATC
37443302 TTATGGAGAA
Statistics
Matches: 66, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
41 1 0.02
42 17 0.26
43 13 0.20
44 9 0.14
45 21 0.32
46 5 0.08
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.33
Consensus pattern (42 bp):
AGGATTACTGGCTTCAATTCTGCCCGCTGTAATCCGGGAGAT
Found at i:37443965 original size:211 final size:206
Alignment explanation
Indices: 37443578--37444127 Score: 539
Period size: 211 Copynumber: 2.6 Consensus size: 206
37443568 TACTCAGGAG
* * *
37443578 ATAAGACCTGATGCGAT-TACTCTACTGTACGACTTAAGAGAGATAGATCCTTTATTCTAATCTG
1 ATAAGACCTGATGCGATCTACTCTAC-ATA--AATTTAGAG-GATAGATCCTTTATT-TAATCTG
* ** *
37443642 TTCACTAGTAATCTCAGGGAAATAGGA-TGCGGCTTCAATCTTGCTCTGATCTGTATATCTCA-G
61 TTCCCTA-TAATCTCAGGGAAATAGGATTATGGCTTCAATCTTGCTCCG--CTGTA-ATCTCAGG
* * * *
37443705 GAGTAAGATTCACCATTTCGATTAGCTCCACTATTCGAGGAGATAAGATCTGGAATTCTTCGGTC
122 GAGAAAGATTCACAATTTCGATTAGCTCCACTATGCGAGGAGATAAGATCTGGAATTCTTCAGTC
* *
37443770 ATTCCACTGGAGAT-TCAGGGA
187 -GTACACTGGA-ATATCAGGGA
* * *
37443791 GTTTAGACCTGATGC-ATCTCACTCTAC-TGAATTTCAG-GAGATTAAGAT-C-TTATTTAATCT
1 -ATAAGACCTGATGCGATCT-ACTCTACATAAATTT-AGAG-GA-T-AGATCCTTTATTTAATCT
*
37443851 GTTCCCTATACATCTAAGGGAAATAGGATTATGGCTTCAATC-TGCTCCGCTGTAATCTCAGGGA
60 GTTCCCTATA-ATCTCAGGGAAATAGGATTATGGCTTCAATCTTGCTCCGCTGTAATCTCAGGGA
* * *
37443915 GAAAGA-TCACAATTTCCGTATTTGCTCCACTAATGCTAGGGAGATAAGATCTGGATTTCTTCAG
124 GAAAGATTCACAATTT-CG-ATTAGCTCCACT-ATGCGA-GGAGATAAGATCTGGAATTCTTCAG
*
37443979 TCGTACACTGTAATATCAGGGA
185 TCGTACACTGGAATATCAGGGA
** *
37444001 ATAAGACCTGATGCGATCTACTCTACTATAAATTTAGAGGATAGATCCTTTATTTCTTCTCGCTC
1 ATAAGACCTGATGCGATCTACTCTAC-ATAAATTTAGAGGATAGATCCTTTATTTAATCT-GTTC
* *
37444066 CACTGTAATCTCAGGCAAATAGGATTACTGGCTT-AATCTTGCGTCCGCTGTAATCTCAGGGA
64 C-CTATAATCTCAGGGAAATAGGATTA-TGGCTTCAATCTTGC-TCCGCTGTAATCTCAGGGA
37444128 ATAGGATTAC
Statistics
Matches: 283, Mismatches: 29, Indels: 49
0.78 0.08 0.14
Matches are distributed among these distances:
207 14 0.05
208 19 0.07
209 36 0.13
210 70 0.25
211 81 0.29
212 17 0.06
213 26 0.09
214 13 0.05
215 7 0.02
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (206 bp):
ATAAGACCTGATGCGATCTACTCTACATAAATTTAGAGGATAGATCCTTTATTTAATCTGTTCCC
TATAATCTCAGGGAAATAGGATTATGGCTTCAATCTTGCTCCGCTGTAATCTCAGGGAGAAAGAT
TCACAATTTCGATTAGCTCCACTATGCGAGGAGATAAGATCTGGAATTCTTCAGTCGTACACTGG
AATATCAGGGA
Found at i:37444139 original size:44 final size:43
Alignment explanation
Indices: 37444062--37444163 Score: 152
Period size: 44 Copynumber: 2.3 Consensus size: 43
37444052 ATTTCTTCTC
* *
37444062 GCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTAATCTT
1 GCTCCGCTGTAATCTCAGGCAAATAGGATTACTGGCTCAAT-TT
*
37444106 GCGTCCGCTGTAATCTCAGG-GAATAGGATTACTGGCTCAATTT
1 GC-TCCGCTGTAATCTCAGGCAAATAGGATTACTGGCTCAATTT
37444149 GCTCCGCTGTAATCT
1 GCTCCGCTGTAATCT
37444164 TTGGAGATAA
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
42 13 0.24
43 4 0.07
44 21 0.39
45 16 0.30
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31
Consensus pattern (43 bp):
GCTCCGCTGTAATCTCAGGCAAATAGGATTACTGGCTCAATTT
Found at i:37446991 original size:43 final size:44
Alignment explanation
Indices: 37446938--37447025 Score: 124
Period size: 43 Copynumber: 2.0 Consensus size: 44
37446928 CGAAGATGTG
*
37446938 AATCTTATCTCCAAAAGATTACAGCGGAGC-AATTGAAGCCAGT
1 AATCCTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGT
*** *
37446981 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGCCAGT
1 AATCCTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGT
37447025 A
1 A
37447026 TCTATTTGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
43 26 0.67
44 13 0.33
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (44 bp):
AATCCTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGT
Found at i:37447052 original size:42 final size:43
Alignment explanation
Indices: 37446953--37447052 Score: 141
Period size: 42 Copynumber: 2.3 Consensus size: 43
37446943 TATCTCCAAA
37446953 AGATTACAGCGGAGCAATTGAAGCCAGTAATCCTATCTCCCTG
1 AGATTACAGCGGAGCAATTGAAGCCAGTAATCCTATCTCCCTG
* * *
37446996 AGATTACAGCGGAGCAAATTTAAGCCAGT-AT-CTATTTGCCTG
1 AGATTACAGCGGAGC-AATTGAAGCCAGTAATCCTATCTCCCTG
*
37447038 AGATTACAGTGGAGC
1 AGATTACAGCGGAGC
37447053 GAAAGAACTA
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
42 23 0.44
43 17 0.33
44 12 0.23
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (43 bp):
AGATTACAGCGGAGCAATTGAAGCCAGTAATCCTATCTCCCTG
Found at i:37447400 original size:213 final size:212
Alignment explanation
Indices: 37446988--37447602 Score: 742
Period size: 213 Copynumber: 2.8 Consensus size: 212
37446978 AGTAATCCTA
* * * *
37446988 TCTCCCTGAGATTACAGCGGAGCAAATTTAAGCCAGT-AT-CTATTTGCCTGAGATTACAGTGGA
1 TCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA-TGTGGA
* * *
37447051 GCGA-AAGAACTAAAGGATCTTATCTCTCTAATGATGT-TAGTAGAGTAGATCGCATCAGGTCTT
65 ACGATTA-AA-TAAAGGATCTTATCTCTCTAA--AT-TACAGTAGAGTAGATCGCATCAGGTCTT
* *
37447114 AGCTCCCTGA-ATTACAGTTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCA
125 AACTCCCTGAGATT-C-----CAGTGGAATAGAC-GAAGAATTCCAGATCTTATCTCCCTAAGCA
*
37447178 ATAGTGGAGCAAAACGAAAATTGTGAATCT
183 ATAGTGGAGCAAAACGAAAATGGTGAATCT
*
37447208 CTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTAGATTATGTGGA
1 -TCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTATGTGGA
* *
37447273 ACAGATTAAATAATGGATCTTAT-TCTCTGAAATTACAGTAGAGTAGAT-GCATCAGGTCTAAAC
65 AC-GATTAAATAAAGGATCTTATCTCTCT-AAATTACAGTAGAGTAGATCGCATCAGGTCTTAAC
37447336 TCCCTGAGATTCCAGTGGAATAGACGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAGC
128 TCCCTGAGATTCCAGTGGAATAGACGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAGC
* *
37447401 TAATCGAAAATGGTGAATCT
193 AAAACGAAAATGGTGAATCT
** *
37447421 TAGCTCCCTGAGATTACAGTAGAGCAGATTGAAG-CAGCAATCCTATTTCCCTGAGATTATAGTG
1 T--CTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAT-GTG
* * *
37447485 GAACGGATTAGATAAAGGATCTTATCTATCTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA
63 GAAC-GATTAAATAAAGGATCTTATCTCTC-TAAATTACAGTAGAGTAGATCGCATCAGGTCTTA
* ** * *
37447550 TCTCCCTGAGATTATAGTGGAATAGACCGGAGAATTTCAGATCTTATCTCCCT
126 ACTCCCTGAGATTCCAGTGGAATAGA-CGAAGAATTCCAGATCTTATCTCCCT
37447603 GAGATTACAG
Statistics
Matches: 350, Mismatches: 30, Indels: 32
0.85 0.07 0.08
Matches are distributed among these distances:
212 1 0.00
213 80 0.23
214 67 0.19
215 21 0.06
216 36 0.10
217 24 0.07
219 22 0.06
220 17 0.05
221 40 0.11
222 22 0.06
223 19 0.05
224 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (212 bp):
TCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTATGTGGAA
CGATTAAATAAAGGATCTTATCTCTCTAAATTACAGTAGAGTAGATCGCATCAGGTCTTAACTCC
CTGAGATTCCAGTGGAATAGACGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAA
ACGAAAATGGTGAATCT
Found at i:37447681 original size:173 final size:172
Alignment explanation
Indices: 37447417--37447777 Score: 473
Period size: 173 Copynumber: 2.1 Consensus size: 172
37447407 AAAATGGTGA
* * * * *
37447417 ATCTTAGCTCCCTGAGATTACAGTAGAGCAGATTGAAGCAGCAATCCTATTTCCCTGAGATTATA
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCAGCAATCCTATCTCCCTAAGATTACA
* *
37447482 GTGGAACGGATTAGATAAAGGATCTTATCTATCTTAAGTTACAGTAGAGTAGATCGCATCAGG-T
66 GTGGAACGGATTAAATAAAGGATCTTATCTATCTGAAGTTACAGTAGAGTAGATCG-ATCAGGTT
* *
37447546 CTTATCTCCCTGAGATTATAGTGGAATAGAC-CGGAGA-ATTTCAG
130 CTTATCTCCCTG-GATTACAGTGGAATAGACAC-GA-ATAGTTCAG
* * *
37447590 ATCTTATCTCCCTGAGATTACAGCGGAG-TGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGC-AGCAATCCTATCTCCCTAAGATTAC
* *
37447654 AGTGGAGC-GATTAAAAGTAAA-GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGATCAGG
65 AGTGGAACGGATT-AAA-TAAAGGATCTTATCTATCTGAAGTTACAGTAGAGTAGATCGATCAGG
*
37447717 TTCTTATCTCTCTGGATTACAGTGGAATAGACACGAATAGTTCAG
128 TTCTTATCTCCCTGGATTACAGTGGAATAGACACGAATAGTTCAG
*
37447762 ATCTTGTCTCCCTGAG
1 ATCTTATCTCCCTGAG
37447778 CAATAGTGGA
Statistics
Matches: 166, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
171 1 0.01
172 59 0.36
173 102 0.61
174 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (172 bp):
ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCAGCAATCCTATCTCCCTAAGATTACA
GTGGAACGGATTAAATAAAGGATCTTATCTATCTGAAGTTACAGTAGAGTAGATCGATCAGGTTC
TTATCTCCCTGGATTACAGTGGAATAGACACGAATAGTTCAG
Found at i:37447684 original size:43 final size:44
Alignment explanation
Indices: 37447588--37447699 Score: 115
Period size: 43 Copynumber: 2.6 Consensus size: 44
37447578 GGAGAATTTC
* * * * *
37447588 AGATCTTATCTCCCTGAGATTACAGCGGAGTGATTGAAGCTAGT
1 AGATCTTATCTCCCTAAGATTACAGTGGAGCGATTAAAGCTAGA
*
37447632 A-ATCCTATCTCCCTAAGATTACAGTGGAGCGATTAAAAG-TA-A
1 AGATCTTATCTCCCTAAGATTACAGTGGAGCGATT-AAAGCTAGA
*
37447674 AGATCTTATCTCTCTGAAG-TTACAGT
1 AGATCTTATCTCCCT-AAGATTACAGT
37447700 AGAGTAGATC
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
42 1 0.02
43 49 0.86
44 7 0.12
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (44 bp):
AGATCTTATCTCCCTAAGATTACAGTGGAGCGATTAAAGCTAGA
Found at i:37447764 original size:86 final size:86
Alignment explanation
Indices: 37447502--37447776 Score: 217
Period size: 86 Copynumber: 3.2 Consensus size: 86
37447492 TTAGATAAAG
** * * *
37447502 GATCTTATCTATCTTAAGTTACAGTAGAGTAGATCGCATCAGG-TCTTATCTCCCTGAGATTATA
1 GATCTTATCTCCCTGAAGTTACAGTAGAGTAGATCGAATCAGGTTCTTATCTCCCTG-GATTACA
*
37447566 GTGGAATAGAC-CGGAGAATTTCA
65 GTGGAATAGACAC-GA-AAGTTCA
** * * * *
37447589 GATCTTATCTCCCTG-AGATTACAGCGGAGT-GATTGAAGCTA-GTAATCCTATCTCCCTAAGAT
1 GATCTTATCTCCCTGAAG-TTACAGTAGAGTAGATCGAATC-AGGT--TCTTATCTCCCT-GGAT
** * **
37447651 TACAGTGG-AGCGATTA--AAAGTAAA
61 TACAGTGGAATAGA-CACGAAAGTTCA
* *
37447675 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG-ATCAGGTTCTTATCTCTCTGGATTACAG
1 GATCTTATCTCCCTGAAGTTACAGTAGAGTAGATCGAATCAGGTTCTTATCTCCCTGGATTACAG
37447739 TGGAATAGACACGAATAGTTCA
66 TGGAATAGACACGAA-AGTTCA
*
37447761 GATCTTGTCTCCCTGA
1 GATCTTATCTCCCTGA
37447777 GCAATAGTGG
Statistics
Matches: 141, Mismatches: 32, Indels: 31
0.69 0.16 0.15
Matches are distributed among these distances:
83 12 0.09
84 13 0.09
85 3 0.02
86 59 0.42
87 30 0.21
88 3 0.02
89 21 0.15
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (86 bp):
GATCTTATCTCCCTGAAGTTACAGTAGAGTAGATCGAATCAGGTTCTTATCTCCCTGGATTACAG
TGGAATAGACACGAAAGTTCA
Found at i:37447824 original size:173 final size:173
Alignment explanation
Indices: 37447497--37447834 Score: 420
Period size: 173 Copynumber: 1.9 Consensus size: 173
37447487 ACGGATTAGA
*
37447497 TAAAGGATCTTATCTATCTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGAT
1 TAAAGGATCTTATCTATCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGAT
* * * **
37447562 TATAGTGGAATAGACCGGAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGTGATTGAAG
66 TACAGTGGAATAGACCGGAGAAGTTCAGATCTTATCTCCCTGAGA-TACAGCGGAGAGATCAAAG
* *
37447627 CTAGTAATCCTATCTCCCTAAGATTACAGTGGAGCGATTAAAAG
130 CTAGTAATCCTATCTCCATAAGATTACAGCGGAGCGATTAAAAG
* *
37447671 TAAA-GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG-ATCAGGTTCTTATCTCTCTG-GA
1 TAAAGGATCTTATCTATCTGAAGTTACAGTAGAGTAGATCGCATCAGG-TCTTATCTCCCTGAGA
* * *
37447733 TTACAGTGGAATAGACAC-GA-ATAGTTCAGATCTTGTCTCCCTGAGCA-ATAGTGGAGCAGATC
65 TTACAGTGGAATAGAC-CGGAGA-AGTTCAGATCTTATCTCCCTGAG-ATACAGCGGAG-AGATC
* *
37447795 AAAGAC-AGTGAATCTTTTCTCCATAAGATTACAGCGGAGC
126 AAAG-CTAGT-AATCCTATCTCCATAAGATTACAGCGGAGC
37447835 AGATGAAGCC
Statistics
Matches: 142, Mismatches: 15, Indels: 15
0.83 0.09 0.09
Matches are distributed among these distances:
171 8 0.06
172 55 0.39
173 75 0.53
174 4 0.03
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (173 bp):
TAAAGGATCTTATCTATCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGAT
TACAGTGGAATAGACCGGAGAAGTTCAGATCTTATCTCCCTGAGATACAGCGGAGAGATCAAAGC
TAGTAATCCTATCTCCATAAGATTACAGCGGAGCGATTAAAAG
Found at i:37447914 original size:44 final size:44
Alignment explanation
Indices: 37447820--37447941 Score: 128
Period size: 44 Copynumber: 2.8 Consensus size: 44
37447810 TTTCTCCATA
* *
37447820 AGATTACAGCGGAGCAGA-TGAAGCCAGTTATCCTATCTCGCCTG
1 AGATTACAGCGGAGCAGATTGAA-CCAGTAATCCTATCTCGCCAG
* *
37447864 -GGTTACAGCGGAGCAGATTGAACCCAGTAATCCTATCTC-TCAG
1 AGATTACAGCGGAGCAGATTGAA-CCAGTAATCCTATCTCGCCAG
* *
37447907 AGATTACAGCAGGA--AAATTGAAGCAGTAATCCTAT
1 AGATTACAGC-GGAGCAGATTGAACCAGTAATCCTAT
37447942 TTCCCTGATA
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
42 12 0.18
43 25 0.37
44 27 0.40
45 3 0.04
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (44 bp):
AGATTACAGCGGAGCAGATTGAACCAGTAATCCTATCTCGCCAG
Found at i:37448369 original size:43 final size:42
Alignment explanation
Indices: 37448317--37448409 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 42
37448307 GAAGATGGTG
*
37448317 AATCTTATCTCCAA-AGATTACAGCGGAGCAAATTGAAGCCAGT
1 AATCCTATCTCCAAGAG-TTACAGCGGAGCAAATTGAAG-CAGT
** *
37448360 AATCCTATCTCCCTGAGTTACAGCGGAGCAAATTTAAGCAGT
1 AATCCTATCTCCAAGAGTTACAGCGGAGCAAATTGAAGCAGT
37448402 AATCCTAT
1 AATCCTAT
37448410 TTGCCTGATA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
42 12 0.27
43 31 0.69
44 2 0.04
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (42 bp):
AATCCTATCTCCAAGAGTTACAGCGGAGCAAATTGAAGCAGT
Found at i:37448430 original size:42 final size:43
Alignment explanation
Indices: 37448333--37448424 Score: 132
Period size: 43 Copynumber: 2.1 Consensus size: 43
37448323 ATCTCCAAAG
37448333 ATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGA
1 ATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGA
* * * *
37448376 GTTACAGCGGAGCAAATTTAAG-CAGTAATCCTATTTGCCTGA
1 ATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGA
37448418 TATTACA
1 -ATTACA
37448425 TGGAGCGTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 18 0.42
43 25 0.58
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (43 bp):
ATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGA
Found at i:37448831 original size:218 final size:213
Alignment explanation
Indices: 37448360--37448980 Score: 758
Period size: 218 Copynumber: 2.9 Consensus size: 213
37448350 TGAAGCCAGT
* * * *
37448360 AATCCTATCTCCCTGAG-TTACAGCGGAGCAAATTTAAGCAGTAATCCTATTTGCCTGATATTAC
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCAGTAATCCTATTT-CCTGAGATTAC
* **
37448424 A-TGGAGCGTAAGAAAATAAAGGATCTTATCTCTCTAATGTTACAGTAGAGTAGATCGCATCAAG
65 AGTGGAACG-ATTAAAATAAAGGATCTTATCTCTCTAATG-TACAGTAGAGTAGATCGCATC-AG
* * *
37448488 TCTTATCTCCCTGATATTAC-AGT-GAATAGACTGAAGAAATCCAGATCTTATCT-CCTAAGCAA
127 T-TTATCTCCCTGAGATT-CTAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAA
*
37448550 TAGTGGAAGCAAATCGAAATTGTG
190 TAGTGGAAGCAAATCGAAATGGTG
* * *
37448574 AATCTTCTCTCCCTAAGATTACAGCGGGAGACAGATTGAAGCCAGTAATCCTATTTCTCTTAGAT
1 AATCTTATCTCCCTGAGATTACAGC-GGAG-CAGATTGAAG-CAGTAATCCTATTTC-CTGAGAT
* *
37448639 TATAGTGGAACAGATTAAAAT-AAGGATCTTATCTCTCTGAATTGTACAGTAGAGTAGATTGCAT
62 TACAGTGGAAC-GATTAAAATAAAGGATCTTATCTCTCT-AA-TGTACAGTAGAGTAGATCGCAT
*
37448703 CAGTTTCAAACTCCCTGAGATTCTAGTGGAATAGACCGAAGAATTCCAGATCTTATCTTCCCTAA
124 CAGTTT--ATCTCCCTGAGATTCTAGTGGAATAGACCGAAGAATTCCAGATCTTATC-TCCCTAA
*
37448768 G-AATAGTGG-AGCTAATCGAAAATGGTG
186 GCAATAGTGGAAGCAAATCG-AAATGGTG
* *
37448795 AATCTTATCT-CCTGAGATTACAGCAGAGCAGATTGAAGCAGCAATCCTATTTCCCTGAGATTAC
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCAGTAATCCTATTT-CCTGAGATTAC
*
37448859 AGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAA-GTTACAGTAGAGTAGATCGCATCAG
65 AGTGGAAC-GATTAAAATAAAGGATCTTATCTCTC-TAATG-TACAGTAGAGTAGATCGCATCA-
* * *
37448923 GTTTATCTCCCTGAGATTATAGTGGAATAGACCGGAGAATTTCAGATCTTATCTCCCT
126 GTTTATCTCCCTGAGATTCTAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT
37448981 GAGATTACAG
Statistics
Matches: 355, Mismatches: 31, Indels: 41
0.83 0.07 0.10
Matches are distributed among these distances:
214 14 0.04
215 12 0.03
216 50 0.14
217 69 0.19
218 76 0.21
219 52 0.15
220 51 0.14
221 25 0.07
222 6 0.02
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (213 bp):
AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCAGTAATCCTATTTCCTGAGATTACA
GTGGAACGATTAAAATAAAGGATCTTATCTCTCTAATGTACAGTAGAGTAGATCGCATCAGTTTA
TCTCCCTGAGATTCTAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGG
AAGCAAATCGAAATGGTG
Found at i:37449055 original size:171 final size:171
Alignment explanation
Indices: 37448796--37449152 Score: 506
Period size: 171 Copynumber: 2.1 Consensus size: 171
37448786 AAAATGGTGA
* *
37448796 ATCTTATCT-CCTGAGATTACAGCAGAGCAGATTGAAGCAGCAATCCTATTTCCCTGAGATTACA
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCAGCAATCCTATCTCCCTAAGATTACA
* * *
37448860 GTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGGT
66 GTGGAACGAATTAAAATAAAGGATCTTATCTC-CTGAAGTTACAGTAGAGTAGATCGCATCAGGT
* * * *
37448925 TTATCTCCCTGAGATTATAGTGGAATAGACCGGAGAATTTCAG
130 CTATCTCCCTGAGATTACAGTGG-ATAGACCGAAGAATTCCAG
* *
37448968 ATCTTATCTCCCTGAGATTACAGCGGAGCTGA-T-AAGCTAG-AATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGC-AGCAATCCTATCTCCCTAAGATTAC
**
37449030 AGTGGAGTGAATTAAAATAAAGGATCTTATCTCCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
65 AGTGGAACGAATTAAAATAAAGGATCTTATCTCCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
* * *
37449095 CTATCTCTCTGAGATTACAGTGGATAGACCGAATAGTTCCAG
130 CTATCTCCCTGAGATTACAGTGGATAGACCGAAGAATTCCAG
*
37449137 ATCTTGTCTCCCTGAG
1 ATCTTATCTCCCTGAG
37449153 CAATAGTGGA
Statistics
Matches: 166, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
169 30 0.18
170 51 0.31
171 53 0.32
172 12 0.07
173 20 0.12
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (171 bp):
ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCAGCAATCCTATCTCCCTAAGATTACA
GTGGAACGAATTAAAATAAAGGATCTTATCTCCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
TATCTCCCTGAGATTACAGTGGATAGACCGAAGAATTCCAG
Found at i:37449301 original size:44 final size:43
Alignment explanation
Indices: 37449194--37449342 Score: 176
Period size: 44 Copynumber: 3.4 Consensus size: 43
37449184 TTTTTCCATA
37449194 AGATTACAGCGGAGCAGA-TGAAGCCAGTAATTCCTATCTCCTG
1 AGATTACAGCGGAGCAGATTGAAGCCAGTAA-TCCTATCTCCTG
*
37449237 -GATTACAGCGGAGCAGATTGAACCCAGTAATCCTATCTCTCTG
1 AGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTC-CTG
* * * * *
37449280 AGATTACAGCAGAGAAAATTGAAGCAAGTAATCCTATTTCCCTG
1 AGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCT-CCTG
* * *
37449324 ATATTATAGTGGAGCAGAT
1 AGATTACAGCGGAGCAGAT
37449343 GAAAATAAAG
Statistics
Matches: 89, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
42 26 0.29
43 14 0.16
44 48 0.54
45 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (43 bp):
AGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCTG
Found at i:37449758 original size:42 final size:43
Alignment explanation
Indices: 37449711--37449810 Score: 132
Period size: 43 Copynumber: 2.3 Consensus size: 43
37449701 TATCTCCAAA
37449711 AGATTACAGCGGAGC-AATTGAAGCCAGTAATCCTA-TCCCCTG
1 AGATTACAGCGGAGCAAATTGAAGCCAGT-ATCCTATTCCCCTG
* * **
37449753 AGATTACAGCAGAGCAAATTTAAGCCAGTATCCTATTTGCCTG
1 AGATTACAGCGGAGCAAATTGAAGCCAGTATCCTATTCCCCTG
*
37449796 AGATTACAGTGGAGC
1 AGATTACAGCGGAGC
37449811 GCATGAAAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
42 20 0.40
43 30 0.60
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (43 bp):
AGATTACAGCGGAGCAAATTGAAGCCAGTATCCTATTCCCCTG
Found at i:37450220 original size:217 final size:214
Alignment explanation
Indices: 37449739--37450356 Score: 904
Period size: 217 Copynumber: 2.9 Consensus size: 214
37449729 TGAAGCCAGT
* * * * *
37449739 AATCCTATC-CCCTGAGATTACAGCAGAGCAAATTTAAGCCAGTATCCTATTTGCCTGAGATTAC
1 AATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGAATCCTATTTCCCTGAGATTAC
* * *
37449803 AGTGGAGCGCATGAAAATAAAGGATCTTATCTCTCTAATGTTACAGTAGAGTAGATCGAATCAGG
66 AGTGGAACG-ATTAAAATAAAGGATCTTATCTCTCTAA-GTTACAGTAGAGTAGATCGCATCAGG
* * *
37449868 TCTTATCTCCCTGATATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCT-CCTAAGCAAT
129 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAAT
*
37449932 AGTGGAGCAATCGAAATTGTG
194 AGTGGAGCAATCGAAATGGTG
* * * *
37449953 AATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAATCCAGTAATCCTATTTCCCTTAGATTA
1 AATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAG-AATCCTATTTCCCTGAGATTA
* *
37450018 TAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAATTACAGTAGAGTAGAT-GCATCAGG
65 CAGTGGAAC-GATTAAAATAAAGGATCTTATCTCTCTAAGTTACAGTAGAGTAGATCGCATCAGG
* * *
37450082 TCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAAT
129 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAAT
37450147 AGTGGAGCTAATCGAAAATGGTG
194 AGTGGAGC-AATCG-AAATGGTG
37450170 AATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAG-AATCCTATTTCCCTGAGATTA
*
37450235 CAGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAG
65 CAGTGGAAC-GATTAAAATAAAGGATCTTATCTCTC-TAAGTTACAGTAGAGTAGATCGCATCAG
* *
37450300 GTCTTATCT-CCTGAGATTATAGTGGAATAGACCGAAGAATT-TAGATCTTATCTCCCT
128 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT
37450357 GAGATTACAG
Statistics
Matches: 361, Mismatches: 35, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
214 62 0.17
215 63 0.17
216 57 0.16
217 116 0.32
218 49 0.14
219 14 0.04
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.29
Consensus pattern (214 bp):
AATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGAATCCTATTTCCCTGAGATTAC
AGTGGAACGATTAAAATAAAGGATCTTATCTCTCTAAGTTACAGTAGAGTAGATCGCATCAGGTC
TTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAG
TGGAGCAATCGAAATGGTG
Found at i:37450398 original size:217 final size:215
Alignment explanation
Indices: 37449716--37450407 Score: 869
Period size: 217 Copynumber: 3.2 Consensus size: 215
37449706 CCAAAAGATT
* ** * *
37449716 ACAGCGGAGCAATTGAAGCCAGT-AATCCTATC-CCCTGAGATTACAGCAGAGCAAATTTAAGCC
1 ACAGCGGAGCAATCGAAGATAGTGAATCCTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCC
* * * * *
37449779 AGTATCCTATTTGCCTGAGATTACAGTGGAGCGCATGAAAATAAAGGATCTTATCTCTCTAATGT
66 AGAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTAA-GT
* * *
37449844 TACAGTAGAGTAGATCGAATCAGGTCTTATCTCCCTGATATTACAGTGGAATAGACTGAAGAAAT
130 TACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAG-AAT
*
37449909 CCAGATCTTATCT-CCTAAGCA
194 TCAGATCTTATCTCCCTAAGCA
* * * * * * *
37449930 ATAGTGGAGCAATCGAA-ATTGTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAATCC
1 ACAGCGGAGCAATCGAAGATAGTGAATCCTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCC
* * * *
37449994 AGTAATCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAT
66 AG-AATCCTATTTCCCTGAGATTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTAAGT
* * *
37450059 TACAGTAGAGTAGAT-GCATCAGGTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATT
130 TACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATT
37450123 CCAGATCTTATCTCCCTAAGCA
195 -CAGATCTTATCTCCCTAAGCA
* * * * *
37450145 ATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGC
1 ACAGCGGAGC-AATCGAAGATAGTGAATCCTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGC
*
37450210 CAGCAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAA
65 CAG-AATCCTATTTCCCTGAGATTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTC-TAA
*
37450275 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCT-CCTGAGATTATAGTGGAATAGACCGAAGAA
128 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAA
* *
37450339 TTTAGATCTTATCTCCCTGAG-A
193 TTCAGATCTTATCTCCCTAAGCA
* * * *
37450361 TTACAGCGGAGCTGATTGAAGCTAGT-AATCCTATCTCCCTAAGATTA
1 --ACAGCGGAGC-AATCGAAGATAGTGAATCCTATCTCCCTGAGATTA
37450408 AGTGGAGCGA
Statistics
Matches: 414, Mismatches: 53, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
213 5 0.01
214 72 0.17
215 63 0.15
216 60 0.14
217 134 0.32
218 66 0.16
219 14 0.03
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (215 bp):
ACAGCGGAGCAATCGAAGATAGTGAATCCTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCC
AGAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTAAGTT
ACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTC
AGATCTTATCTCCCTAAGCA
Found at i:37450498 original size:172 final size:174
Alignment explanation
Indices: 37450171--37450532 Score: 559
Period size: 173 Copynumber: 2.1 Consensus size: 174
37450161 AAAATGGTGA
* *
37450171 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
* * *
37450236 AGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* *
37450301 TCTTATCTCCTGAGATTATAGTGGAATAGACCGAAGAATT-TAG
131 TCTTATCTCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * *
37450344 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTA-
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
*
37450408 AGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACA-TAGAGTAGATCGCATCAGG
66 AGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* *
37450472 TCTTATCTCTCTGAGATTACAGTGGAATAGACCGAATAGTTCCAG
131 TCTTATCTC-CTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
*
37450517 ATCTTGTCTCCCTGAG
1 ATCTTATCTCCCTGAG
37450533 CAATAGTGGA
Statistics
Matches: 172, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
171 28 0.16
172 69 0.40
173 75 0.44
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (174 bp):
ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
AGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
Found at i:37450631 original size:44 final size:44
Alignment explanation
Indices: 37450579--37450719 Score: 169
Period size: 43 Copynumber: 3.2 Consensus size: 44
37450569 CCATTAAGAG
*
37450579 TACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGGGAT
1 TACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGAT
* * *
37450623 TACAGCGGAGCAGATTGTACCCAGTAAT-CTATCTCTCTGAGAT
1 TACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGAT
* * * * *
37450666 TACAGCGGA-AAAATTGAAGCAAGTAATCCTATTTCCCTGATAT
1 TACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGAT
* *
37450709 TATAGTGGAGC
1 TACAGCGGAGC
37450720 GATGAAAATA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 13 0.16
43 41 0.51
44 26 0.32
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (44 bp):
TACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGAT
Found at i:37451172 original size:43 final size:43
Alignment explanation
Indices: 37451072--37451186 Score: 160
Period size: 43 Copynumber: 2.7 Consensus size: 43
37451062 GAAGATGGTG
* ** *
37451072 AATCTTATCTCCAAAGATTACAGCGGAGCAAATTGAAGCCAGT
1 AATCCTATCTCCTGAGATTACAGTGGAGCAAATTGAAGCCAGT
*
37451115 AATCCTATCTCCTGAGATTACAGTGGAGCAAATTTAAG-CAGT
1 AATCCTATCTCCTGAGATTACAGTGGAGCAAATTGAAGCCAGT
*
37451157 AATCCTATTTGCCTGAGATTACAGTGGAGC
1 AATCCTATCT-CCTGAGATTACAGTGGAGC
37451187 GGATGAAAAT
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
42 13 0.20
43 52 0.80
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (43 bp):
AATCCTATCTCCTGAGATTACAGTGGAGCAAATTGAAGCCAGT
Found at i:37451638 original size:214 final size:214
Alignment explanation
Indices: 37451119--37451729 Score: 826
Period size: 214 Copynumber: 2.8 Consensus size: 214
37451109 GCCAGTAATC
* * *
37451119 CTATCTCCTGAGATTACAGTGGAGCAAATTTAAGCAGTAATCCTATTTGCCTGAGATTACAGTGG
1 CTATCTCCTGAGATTACAGCGGAGCAAATTGAAGCAGTAATCCTATTTCCCTGAGATTACAGTGG
* * *
37451184 AGCGGATGAAAATAAAGGATCTTTATCTCTCTAATGTTACAGTAGAGTAGATCGCATCAGGT-TT
66 AACAGATTAAAATAAAGGATC-TTATCT-TCTAA-GTTACAGTAGAGTAGATCGCATCAGGTCTT
* *
37451248 ATCTCCCTGATATTACAGTGGAATAGACTGAAGAA-TCCAGATC-TATCTCCCTAAGCAATAGTG
128 ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTG
*
37451311 GAGCAAATCGAAAATTGTGAAT
193 GAGCAAATCGAAAATGGTGAAT
* * * *
37451333 CTCTCTTCCCTGAGATTACAGCGGAGCATTATTG-AGCAGTAATCCTATTTCCCTTAGATTATAG
1 CTATC-T-CCTGAGATTACAGCGGAGCA-AATTGAAGCAGTAATCCTATTTCCCTGAGATTACAG
* *
37451397 TGGAACAGATTAAAATAAAGGATCTTATCTTCTGAAATTACAGTAGAGTAGATTGCATCAGGTCT
63 TGGAACAGATTAAAATAAAGGATCTTATCTTCT-AAGTTACAGTAGAGTAGATCGCATCAGGTCT
* * *
37451462 AAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGC-ATAGT
127 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGT
*
37451526 GGAGC-TATCGAAAATGGTGAAT
192 GGAGCAAATCGAAAATGGTGAAT
* * *
37451548 CTTATCTGCCTG-GATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAG
1 C-TATCT-CCTGAGATTACAGCGGAGCAAATTGAAG-CAGTAATCCTATTTCCCTGAGATTACAG
* *
37451612 T-GAACAGATTAGAATAAAGGATCTTATCTCTTTAAGTTACAGTAGAGTAGATCGCATCAGGTCT
63 TGGAACAGATTAAAATAAAGGATCTTATCT-TCTAAGTTACAGTAGAGTAGATCGCATCAGGTCT
* *
37451676 TATCT-CCTGAGATTATAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCT
127 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT
37451730 GAGATACAGC
Statistics
Matches: 351, Mismatches: 35, Indels: 23
0.86 0.09 0.06
Matches are distributed among these distances:
213 50 0.14
214 107 0.30
215 90 0.26
216 88 0.25
217 16 0.05
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (214 bp):
CTATCTCCTGAGATTACAGCGGAGCAAATTGAAGCAGTAATCCTATTTCCCTGAGATTACAGTGG
AACAGATTAAAATAAAGGATCTTATCTTCTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATC
TCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAG
CAAATCGAAAATGGTGAAT
Found at i:37451725 original size:85 final size:85
Alignment explanation
Indices: 37451631--37451898 Score: 210
Period size: 85 Copynumber: 3.1 Consensus size: 85
37451621 TAGAATAAAG
*
37451631 GATCTTATCTCTTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCTGAGATTATAGTG
1 GATCTTATCTCTTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCTGAGATTACAGTG
*
37451696 GAATAGACCGAAGAATTTCA
66 GAATAGACCGAATAATTTCA
** * * ** * * * * *
37451716 GATCTTATCTCCCTGAGATACAGCGGAGCT-GATTGAAGCTAGTAATCTTATCTCCCTAAGATTA
1 GATCTTATCTCTTTAAGTTACAGTAGAG-TAGATCGCATC-AG--GTCTTATCT-CCTGAGATTA
* *
37451780 CAGTGG---AG--CGAATTAA-ATAA
61 CAGTGGAATAGACCGAA-TAATTTCA
* *
37451800 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAAGATCGCATCAGGTCTTATAAT-CTGAGATTAC
1 -GATCTTATCTCT-TTAAGTTACAGTAGAGT-AGATCGCATCAGGTCTTAT-CTCCTGAGATTAC
* *
37451864 AGTGGAATAGACCGAATAGTTCCA
62 AGTGGAATAGACCGAATAATTTCA
*
37451888 GATCTTGTCTC
1 GATCTTATCTC
37451899 CTGAGCAATA
Statistics
Matches: 133, Mismatches: 33, Indels: 32
0.67 0.17 0.16
Matches are distributed among these distances:
83 14 0.11
84 12 0.09
85 43 0.32
86 19 0.14
87 18 0.14
88 13 0.10
89 14 0.11
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31
Consensus pattern (85 bp):
GATCTTATCTCTTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCTGAGATTACAGTG
GAATAGACCGAATAATTTCA
Found at i:37451765 original size:214 final size:218
Alignment explanation
Indices: 37451073--37451793 Score: 823
Period size: 214 Copynumber: 3.4 Consensus size: 218
37451063 AAGATGGTGA
* * *** *
37451073 ATCTTATCT-CCAAAG-ATTACAGCGGAGCAAATTGAAGCCAGT-AATCCTATCT-CCTGAGATT
1 ATCTTATCTCCCTAAGCA-TACAGCGGAGCAAATCGAAAATAGTGAATCTTATCTCCCTGAGATT
* * * * * *
37451134 ACAGTGGAGCAAATTTAAGCAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAAATAA
65 ACAGCGGAGCAAATTGAAGCAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATAA
* *
37451199 AGGATCTTTATCTCTCTAATGTTACAGTAGAGTAGATCGCATCAGGT-TTATCTCCCTGATATTA
130 AGGATC-TTATCTCTTTAA-GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTA
*
37451263 CAGTGGAATAGACTGAAGAA-TCCAG
193 CAGTGGAATAGACCGAAGAATTCCAG
* * * *
37451288 ATC-TATCTCCCTAAGCA-ATAGTGGAGCAAATCGAAAATTGTGAATC-TCTCTTCCCTGAGATT
1 ATCTTATCTCCCTAAGCATACAGCGGAGCAAATCGAAAATAGTGAATCTTATC-TCCCTGAGATT
* * *
37451350 ACAGCGGAGCATTATTG-AGCAGTAATCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATA
65 ACAGCGGAGCA-AATTGAAGCAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATA
* * * * * *
37451414 AAGGATCTTATCT-TCTGAAATTACAGTAGAGTAGATTGCATCAGGTCTAAACTCCCTGAGATTC
129 AAGGATCTTATCTCT-TTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTA
37451478 CAGTGGAATAGACCGAAGAATTCCAG
193 CAGTGGAATAGACCGAAGAATTCCAG
* * * *
37451504 ATCTTATCTCCCTAAGCAT--AGTGGAGC-TATCGAAAATGGTGAATCTTATCTGCCTG-GATTA
1 ATCTTATCTCCCTAAGCATACAGCGGAGCAAATCGAAAATAGTGAATCTTATCTCCCTGAGATTA
* * * *
37451565 CAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAGT-GAACAGATTAGAATAA
66 CAGCGGAGCAAATTGAAG-CAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATAA
*
37451629 AGGATCTTATCTCTTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCT-CCTGAGATTATA
130 AGGATCTTATCTCTTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACA
*
37451693 GTGGAATAGACCGAAGAATTTCAG
195 GTGGAATAGACCGAAGAATTCCAG
* ** * ** *
37451717 ATCTTATCTCCCTGAG-ATACAGCGGAGCTGATTGAAGCTAGT-AATCTTATCTCCCTAAGATTA
1 ATCTTATCTCCCTAAGCATACAGCGGAGCAAATCGAAAATAGTGAATCTTATCTCCCTGAGATTA
* *
37451780 CAGTGGAGCGAATT
66 CAGCGGAGCAAATT
37451794 AAATAAGGAT
Statistics
Matches: 429, Mismatches: 58, Indels: 38
0.82 0.11 0.07
Matches are distributed among these distances:
212 2 0.00
213 52 0.12
214 147 0.34
215 124 0.29
216 87 0.20
217 17 0.04
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (218 bp):
ATCTTATCTCCCTAAGCATACAGCGGAGCAAATCGAAAATAGTGAATCTTATCTCCCTGAGATTA
CAGCGGAGCAAATTGAAGCAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATAAA
GGATCTTATCTCTTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAG
TGGAATAGACCGAAGAATTCCAG
Found at i:37451892 original size:172 final size:170
Alignment explanation
Indices: 37451546--37451964 Score: 503
Period size: 171 Copynumber: 2.4 Consensus size: 170
37451536 AAAATGGTGA
* * * * *
37451546 ATCTTATCTGCCTG-GATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTAC
1 ATCTTATCT-CCTGAGA-TACAGCGGAGCAGATTGAAG-CAGTAATCTTATCTCCCTAAGATTAC
* *
37451610 AGT-GAACAGATTAGAATAAAGGATCTTATCTCTTTAAGTTACAGTAGAGTAGATCGCATCAGGT
63 AGTGGAGCAGATTAGAATAAAGGATCTTATCTCTTGAAGTTACAGTAGAGTAGATCGCATCAGGT
* * *
37451674 CTTATCTCCTGAGATTATAGTGGAATAGACCGAAGAATTTCAG
128 CTTATATCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
*
37451717 ATCTTATCTCCCTGAGATACAGCGGAGCTGATTGAAGCTAGTAATCTTATCTCCCTAAGATTACA
1 ATCTTATCT-CCTGAGATACAGCGGAGCAGATTGAAGC-AGTAATCTTATCTCCCTAAGATTACA
37451782 GTGGAGC-GAATTA-AAT-AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAAGATCGCATCAG
64 GTGGAGCAG-ATTAGAATAAAGGATCTTATCTCT-TGAAGTTACAGTAGAGT-AGATCGCATCAG
* *
37451844 GTCTTATAAT-CTGAGATTACAGTGGAATAGACCGAATAGTTCCAG
126 GTCTTAT-ATCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * * *
37451889 ATCTTGTCTCCTGAGCA-ATAGTGGAGCAGATCGAAGACAGTGAATCTT-TCTCCATAAGATTAC
1 ATCTTATCTCCTGAG-ATACAGCGGAGCAGATTGAAG-CAGT-AATCTTATCTCCCTAAGATTAC
*
37451952 AGCGGAGCAGATT
63 AGTGGAGCAGATT
37451965 GAAGCCAGTA
Statistics
Matches: 216, Mismatches: 21, Indels: 22
0.83 0.08 0.08
Matches are distributed among these distances:
170 16 0.07
171 123 0.57
172 76 0.35
173 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (170 bp):
ATCTTATCTCCTGAGATACAGCGGAGCAGATTGAAGCAGTAATCTTATCTCCCTAAGATTACAGT
GGAGCAGATTAGAATAAAGGATCTTATCTCTTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
ATATCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
Found at i:37451959 original size:44 final size:42
Alignment explanation
Indices: 37451911--37452005 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 42
37451901 GAGCAATAGT
* *
37451911 GGAGCAGATCGAAGACAGTGAATCTTTCTCCATAAGATTACAGC
1 GGAGCAGATCGAAGACAGT-AATCCTTCTCC-CAAGATTACAGC
* * **
37451955 GGAGCAGATTGAAGCCAGTAATCCTTCTCCCGGGATTACAGC
1 GGAGCAGATCGAAGACAGTAATCCTTCTCCCAAGATTACAGC
37451997 GGAGCAGAT
1 GGAGCAGAT
37452006 TGAACCCAGT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 18 0.40
43 10 0.22
44 17 0.38
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (42 bp):
GGAGCAGATCGAAGACAGTAATCCTTCTCCCAAGATTACAGC
Found at i:37451996 original size:42 final size:44
Alignment explanation
Indices: 37451945--37452068 Score: 146
Period size: 42 Copynumber: 2.8 Consensus size: 44
37451935 TTTCTCCATA
37451945 AGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT-TCTC-CCG
1 AGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCTCCG
* * *
37451987 GGATTACAGCGGAGCAGATTGAACCCAGT-ATCCTATCTCTCTG
1 AGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCTCCG
* * **
37452030 AGATTATACAGCGGAGAAAATTGAAGGAAGTAATCCTAT
1 AGA-T-TACAGCGGAGCAGATTGAAGCCAGTAATCCTAT
37452069 TTCCCTGATA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
41 5 0.07
42 31 0.46
43 4 0.06
44 1 0.01
45 20 0.29
46 7 0.10
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.23
Consensus pattern (44 bp):
AGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCTCCG
Found at i:37452409 original size:216 final size:214
Alignment explanation
Indices: 37452047--37452516 Score: 495
Period size: 216 Copynumber: 2.2 Consensus size: 214
37452037 ACAGCGGAGA
** * * *
37452047 AAATTGAAGGAAGTAATCCTATTTCCCTGATATTATAGTAGAGCAGATAAAATAAGGATCTTATC
1 AAATTGAAGCCAGTAATCCTA-TTCCCTGAGATTACAGTAGAACAGATAAAATAAGGA-CTTATC
*
37452112 TCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCTGAGATTGCAGCGGAATAAAC
64 TCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCTGAGATTACAGCGGAATAAAC
* *
37452177 TAAATAAATCCAGATCTTATCTCCCT-AAGC-ATAGTGGAGCTA-ATAAAAAATGGTGAATCTAA
129 CAAATAAATCCAGATCTTATCTCCCTGAA-CAATAGGGGAGC-AGATAAAAAATGGTGAATCTAA
***
37452239 TCTCCCTGAGATTATAACAGAGC
192 TCTCCAAAAGATTATAACAGAGC
* * *
37452262 AGATAT-AATGCTAGTAATCCTATTACCCTGAGATTACAGT-GAACGGATTAAAAATAAAGGA-T
1 AAAT-TGAA-GCCAGTAATCCTATT-CCCTGAGATTACAGTAGAACAGA-T-AAAAT-AAGGACT
* * * *
37452324 TATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATTTCCCTGAGATTACTGTGGAA
60 TATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCT-CCTGAGATTACAGCGGAA
** * * * * * * ** *
37452389 TAGGCCGAA-GAGTTCAGATCTTGTCTTCCTGAACAATAGGGGAGCAGATCGAAGATGGTGAATC
124 TAAACCAAATAAATCCAGATCTTATCTCCCTGAACAATAGGGGAGCAGATAAAAAATGGTGAATC
* * *
37452453 TTATCTCCAAAAGATTATAGCGGAGC
189 TAATCTCCAAAAGATTATAACAGAGC
37452479 AAATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAG
1 AAATTGAAGCCAGTAATCCTAT-TCCCTGAGATTACAG
37452517 CGGAGCAAAT
Statistics
Matches: 210, Mismatches: 33, Indels: 23
0.79 0.12 0.09
Matches are distributed among these distances:
215 12 0.06
216 117 0.56
217 76 0.36
218 5 0.02
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (214 bp):
AAATTGAAGCCAGTAATCCTATTCCCTGAGATTACAGTAGAACAGATAAAATAAGGACTTATCTC
TCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCTGAGATTACAGCGGAATAAACCA
AATAAATCCAGATCTTATCTCCCTGAACAATAGGGGAGCAGATAAAAAATGGTGAATCTAATCTC
CAAAAGATTATAACAGAGC
Found at i:37452503 original size:44 final size:44
Alignment explanation
Indices: 37452449--37452544 Score: 138
Period size: 44 Copynumber: 2.2 Consensus size: 44
37452439 GAAGATGGTG
* *
37452449 AATCTTATCTCCAAAAGATTATAGCGGAGCAAATTGAAGCCAGT
1 AATCCTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGT
*** *
37452493 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGCCAGT
1 AATCCTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGT
37452537 AATCCTAT
1 AATCCTAT
37452545 TTGCCTGAGA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (44 bp):
AATCCTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGT
Found at i:37452552 original size:44 final size:44
Alignment explanation
Indices: 37452464--37452566 Score: 161
Period size: 44 Copynumber: 2.3 Consensus size: 44
37452454 TATCTCCAAA
*
37452464 AGATTATAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTG
1 AGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTG
* * *
37452508 AGATTACAGCGGAGCAAATTTAAGCCAGTAATCCTATTTGCCTG
1 AGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTG
*
37452552 AGATTACAGTGGAGC
1 AGATTACAGCGGAGC
37452567 GAAAGAAACT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 54 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.25
Consensus pattern (44 bp):
AGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTG
Found at i:37452978 original size:217 final size:214
Alignment explanation
Indices: 37452493--37453109 Score: 841
Period size: 217 Copynumber: 2.9 Consensus size: 214
37452483 TGAAGCCAGT
* * * *
37452493 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * **
37452558 CAGTGGAGCGA-AAGAAACTAAAGGATCTTATCTCTCT-AATGT-TTGTAGAGTAGATCGCATCA
66 CAGTGGAACGATTA-AAA-TAAAGGATCTTATCTCTCTAAAT-TACAGTAGAGTAGATCGCATCA
* * *
37452620 GGTCTTATCTCCCTGATATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCT-CTAAGCAA
128 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCG-AGAATTCCAGATCTTATCTCCTAAGCAA
*
37452684 TAGTGGAGCAAACGAAAATTGTG
192 TAGTGGAGCAAACGAAAATGGTG
* *
37452707 AATCTTCTCT-CCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * *
37452771 TAGTGGAACAGATTAAAATAATGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATTGCATCAG
66 CAGTGGAAC-GATTAAAATAAAGGATCTTATCTCTCT-AAATTACAGTAGAGTAGATCGCATCAG
* * *
37452836 GTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAGAATTCCAGATCTTATTCTCCTAAGCAAT
129 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAGAATTCCAGATCTTA-TCTCCTAAGCAAT
*
37452901 AGTGGAGCTAATCG-AAATGGTG
193 AGTGGAGC-AAACGAAAATGGTG
* *
37452923 AATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * *
37452988 CAGTGGAACGGATTAGAATAAAGGATCTTATCTATCTTAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAAC-GATTAAAATAAAGGATCTTATCTCTC-TAAATTACAGTAGAGTAGATCGCATCAG
* *
37453053 GTCTTATCTCCCTGAGATTATAGTGGAATAGACCGGAGAATTTCAGATCTTATCTCC
129 GTCTTATCTCCCTGAGATTACAGTGGAATAGACC-GAGAATTCCAGATCTTATCTCC
37453110 CTGAGATTAC
Statistics
Matches: 355, Mismatches: 37, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
213 75 0.21
214 29 0.08
215 55 0.15
216 33 0.09
217 146 0.41
218 17 0.05
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (214 bp):
AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
CAGTGGAACGATTAAAATAAAGGATCTTATCTCTCTAAATTACAGTAGAGTAGATCGCATCAGGT
CTTATCTCCCTGAGATTACAGTGGAATAGACCGAGAATTCCAGATCTTATCTCCTAAGCAATAGT
GGAGCAAACGAAAATGGTG
Found at i:37453136 original size:175 final size:175
Alignment explanation
Indices: 37452924--37453289 Score: 570
Period size: 175 Copynumber: 2.1 Consensus size: 175
37452914 GAAATGGTGA
* *
37452924 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
* * *
37452989 AGTGGAACGGATTAGAATAAAGGATCTTATCTATCTTAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGAATTAAAATAAAGGATCTTATCTATCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* * *
37453054 TCTTATCTCCCTGAGATTATAGTGGAATAGACCGGAGAATTTCAG
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * *
37453099 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
* *
37453164 AGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGAATTAAAATAAAGGATCTTATCTATCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* * *
37453229 TCTTATCTCTCTGAGATTACAGTGGAATAGACCGAATAGTTCCAG
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
*
37453274 ATCTTGTCTCCCTGAG
1 ATCTTATCTCCCTGAG
37453290 CAATAGTGGA
Statistics
Matches: 173, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
175 173 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (175 bp):
ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
AGTGGAACGAATTAAAATAAAGGATCTTATCTATCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
Found at i:37453336 original size:175 final size:174
Alignment explanation
Indices: 37452924--37453346 Score: 526
Period size: 175 Copynumber: 2.4 Consensus size: 174
37452914 GAAATGGTGA
* ** * * * * *
37452924 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGA-TACAGCGGAGCAGATCAAAGCTAGTAATCCTATCTCCATAAGATTAC
* * * *
37452989 AGTGGAACGGATTAGAATAAAGGATCTTATCTATCTTAAGTTACAGTAGAGTAGATCGCATCAGG
65 AGTGGAGCGAATTAAAATAAAGGATCTTATCTATCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* * *
37453054 TCTTATCTCCCTGAGATTATAGTGGAATAGACCGGAGAATTTCAG
130 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
* ** *
37453099 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGA-TACAGCGGAGCAGATCAAAGCTAGTAATCCTATCTCCATAAGATTAC
*
37453164 AGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
65 AGTGGAGCGAATTAAAATAAAGGATCTTATCTATCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* * *
37453229 TCTTATCTCTCTGAGATTACAGTGGAATAGACCGAATAGTTCCAG
130 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * * *
37453274 ATCTTGTCTCCCTGAGCA-ATAGTGGAGCAGATCAAAGAC-AGTGAATCTTTTCTCCATAAGATT
1 ATCTTATCTCCCTGAG-ATACAGCGGAGCAGATCAAAG-CTAGT-AATCCTATCTCCATAAGATT
*
37453337 ACAGCGGAGC
63 ACAGTGGAGC
37453347 AGATTGAAGC
Statistics
Matches: 218, Mismatches: 27, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
174 17 0.08
175 200 0.92
176 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (174 bp):
ATCTTATCTCCCTGAGATACAGCGGAGCAGATCAAAGCTAGTAATCCTATCTCCATAAGATTACA
GTGGAGCGAATTAAAATAAAGGATCTTATCTATCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
CTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
Found at i:37453426 original size:263 final size:264
Alignment explanation
Indices: 37453103--37454184 Score: 926
Period size: 263 Copynumber: 4.1 Consensus size: 264
37453093 TTTCAGATCT
*
37453103 TATCTCCCTGAGATTACAGCGGAGCTGATTGAAG-CTAGTAATCCTATCT-CCCTA-AGATTACA
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCTAGTAATCCTATCTACCC-AGAGATTACA
37453165 GTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
65 GTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
* * *
37453230 CTTATCTCTCTGAGATTACAGTGGAATAGACCGAATAGTTCCAGATCTTGTCTCCCTGAGCAATA
130 CTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGCAATA
* * *
37453295 GTGGAGCAGATCAAAGACAGTGAATCTTTTCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAG
195 GTGGAGCAAATCAAA-ATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAG
*
37453360 TTATCC
259 TAATCC
* * *
37453366 TATCTCCCTGGGATTACAGCGGAGCAGATTGAA-CCGAGTAATCCTATCT-CTCAGAGATTACAG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCTAGTAATCCTATCTACCCAGAGATTACAG
** ** * ** * * * * * * * * *
37453429 CAGAGAAAATT-GAAGCAAGTAATCCTATTTCCCTGATA-TTATAGTGGAGCAGAT-GAAAATAA
66 TGGAGCGAATTAAAATAAAG-GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG--CAT-C
* * * * * * * *
37453491 AGGATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCG--CA--T-CAGTTCTTATCTCCATGA
126 AGG-TCTTATCTCCCTGAGA-TTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGA
* * ** * * * * *
37453550 G-ATTACAGCGGAATAAACTGAATAA-A-TCCAAATCTTATCTCCCTAAGCA--ATAGTGGAGCT
189 GCA--ATAGTGGAGCAAA-TCAA-AATAGT--GAATCTTATCTCCATAAG-ATTACAGCGGAGC-
** ****
37453610 A-ATAAAAAATGGTGAAT-C
246 AGATTGAAGCCAGT-AATCC
* * * * *
37453628 TGATCTCCCTGAGATTATAACAGAGCATATT-AATG-CTAGTAATCCTAT-TACCCTGAGATTAC
1 T-ATCTCCCTGAGATTACAGCGGAGCAGATTGAA-GCCTAGTAATCCTATCTACCCAGAGATTAC
* * *
37453690 AGTGGAACCG-ATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
64 AGTGG-AGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* * * * * *
37453754 GTCTTATTTCCCTGAGATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAA
128 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGCAA
* * * * *
37453819 TAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCC
193 TAGTGGAGCAAATC-AAAATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCC
37453884 AGTAATCC
257 AGTAATCC
* * ** *
37453892 TATCTCCCTGAGATTACAGCGGAGCAAATTTAAGCC-AGTAATCCTAT-TTGCCTGAGATTACAG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCTAGTAATCCTATCTACCCAGAGATTACAG
* *
37453955 TGGAGCGTAA-GAAAATAAAGGATCTTATCTCTCT-AATGTTACAGTAGAGTAGATCGCATCAAG
66 TGGAGCG-AATTAAAATAAAGGATCTTATCTCTCTGAA-GTTACAGTAGAGTAGATCGCATCAGG
* * ** *
37454018 TCTTATCTCCCTGATATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAAT
129 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGCAAT
* * *
37454083 AGTGGAGCAAATCGAAAATTGTGAATCTTCTCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCA
194 AGTGGAGCAAATC-AAAATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCA
37454148 GTAATCC
258 GTAATCC
* * * * * *
37454155 TATTTCTCTTAGATTATAGTGGAACAGATT
1 TATCTCCCTGAGATTACAGCGGAGCAGATT
37454185 AAAATAAAGG
Statistics
Matches: 633, Mismatches: 141, Indels: 90
0.73 0.16 0.10
Matches are distributed among these distances:
260 24 0.04
261 22 0.03
262 46 0.07
263 449 0.71
264 44 0.07
265 20 0.03
266 28 0.04
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (264 bp):
TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCTAGTAATCCTATCTACCCAGAGATTACAG
TGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
TTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAG
TGGAGCAAATCAAAATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTA
ATCC
Found at i:37453675 original size:307 final size:307
Alignment explanation
Indices: 37453103--37453691 Score: 765
Period size: 307 Copynumber: 1.9 Consensus size: 307
37453093 TTTCAGATCT
* * *** *
37453103 TATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTACAGTG
1 TATCTCCCAGAGATTACAGCAGAGAAAATTGAAGCAAGTAATCCTATCTCCCTAAGATTACAGTG
* *
37453168 GAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
66 GAGCGAATGAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * ** * * *
37453233 ATCTCTCTGAGATTACAGTGGAATAGACCGAATAGTTCCAGATCTTGTCTCCCTGAGCAATAGTG
131 ATCTCTCTGAGATTACAGCGGAATAAACCGAATAAATCCAAATCTTATCTCCCTAAGCAATAGTG
* * ** * * *
37453298 GAGCAGATCAAAGACAGTGAATCTTTTCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTTA
196 GAGCAGATAAAAAACAGTGAATCTGATCTCCATAAGATTACAACAGAGCAGATTGAAGCCAGTAA
*
37453363 TCCTATCT-CCCTGGGATTACAGCGGAGCAGATTGAACCGAGTAATCC
261 TCCTAT-TACCCTGAGATTACAGCGGAGCAGATTGAACCGAGTAATCC
* * * * *
37453410 TATCTCTCAGAGATTACAGCAGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGATATTATAGTG
1 TATCTCCCAGAGATTACAGCAGAGAAAATTGAAGCAAGTAATCCTATCTCCCTAAGATTACAGTG
*
37453475 GAGC-AGATGAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGTTCT
66 GAGCGA-ATGAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
*
37453539 TATCTC-CATGAGATTACAGCGGAATAAACTGAATAAATCCAAATCTTATCTCCCTAAGCAATAG
130 TATCTCTC-TGAGATTACAGCGGAATAAACCGAATAAATCCAAATCTTATCTCCCTAAGCAATAG
** * * * * *
37453603 TGGAGCTA-ATAAAAAATGGTGAATCTGATCTCCCTGAGATTATAACAGAGCATATT-AATGCTA
194 TGGAGC-AGATAAAAAACAGTGAATCTGATCTCCATAAGATTACAACAGAGCAGATTGAA-GCCA
37453666 GTAATCCTATTACCCTGAGATTACAG
257 GTAATCCTATTACCCTGAGATTACAG
37453692 TGGAACCGAT
Statistics
Matches: 240, Mismatches: 37, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
306 5 0.02
307 234 0.98
308 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (307 bp):
TATCTCCCAGAGATTACAGCAGAGAAAATTGAAGCAAGTAATCCTATCTCCCTAAGATTACAGTG
GAGCGAATGAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
ATCTCTCTGAGATTACAGCGGAATAAACCGAATAAATCCAAATCTTATCTCCCTAAGCAATAGTG
GAGCAGATAAAAAACAGTGAATCTGATCTCCATAAGATTACAACAGAGCAGATTGAAGCCAGTAA
TCCTATTACCCTGAGATTACAGCGGAGCAGATTGAACCGAGTAATCC
Found at i:37453722 original size:219 final size:218
Alignment explanation
Indices: 37453420--37453910 Score: 592
Period size: 219 Copynumber: 2.2 Consensus size: 218
37453410 TATCTCTCAG
* * * * * *
37453420 AGATTACAGCAGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGATATTATAGTGGAGCAGATGA
1 AGATTACAACAGAGCAAATTGAAGCCAGTAATCCTA-TTCCCTGAGATTACAGTGGAACAGATGA
* *
37453485 AAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGTTCTTATCTCCATGA
65 AAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGA
* *
37453550 GATTACAGCGGAATAAACTGAATAAATCCAAATCTTATCTCCCT-AAGCAATAGTGGAGCTA-AT
130 GATTACAGCGGAATAAACCGAAGAAATCCAAATCTTATCTCCCTGAA-CAATAGTGGAGC-AGAT
***
37453613 AAAAAATGGTGAATCTGATCTCCCTG
193 AAAAAATGGTGAATCTGATCTCCAAA
* * * * *
37453639 AGATTATAACAGAGCATATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACCGATT
1 AGATTACAACAGAGCAAATTGAA-GCCAGTAATCCTATT-CCCTGAGATTACAGTGGAACAGATG
* *
37453703 AAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATTTCCCTG
64 AAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATG
* * ** ** * * * *
37453768 AGATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATAGTGGAGCAGATC
129 AGATTACAGCGGAATAAACCGAAGAAATCCAAATCTTATCTCCCTGAACAATAGTGGAGCAGATA
* * *
37453833 GAAGATGGTGAATCTTATCTCCAAA
194 AAAAATGGTGAATCTGATCTCCAAA
* *
37453858 AGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAG
1 AGATTACAACAGAGCAAATTGAAGCCAGTAATCCTAT-TCCCTGAGATTACAG
37453911 CGGAGCAAAT
Statistics
Matches: 229, Mismatches: 37, Indels: 12
0.82 0.13 0.04
Matches are distributed among these distances:
218 5 0.02
219 219 0.96
220 5 0.02
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (218 bp):
AGATTACAACAGAGCAAATTGAAGCCAGTAATCCTATTCCCTGAGATTACAGTGGAACAGATGAA
AATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAG
ATTACAGCGGAATAAACCGAAGAAATCCAAATCTTATCTCCCTGAACAATAGTGGAGCAGATAAA
AAATGGTGAATCTGATCTCCAAA
Found at i:37453854 original size:482 final size:482
Alignment explanation
Indices: 37453366--37454392 Score: 1420
Period size: 482 Copynumber: 2.1 Consensus size: 482
37453356 CCAGTTATCC
* *
37453366 TATCTCCCTGGGATTACAGCGGAGCAGATTGAA-CCGAGTAATCCTATCTCTCAGAGATTACAGC
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCC-AGTAATCCTATCTCCCAGAGATTACAGC
* * *
37453430 AGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGATATTATAGTGGAGCAG-ATGAAAATAAAGG
65 AGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGAGATTACAGTGGAGC-GTAAGAAAATAAAGG
37453494 ATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATC-AGTTCTTATCTCCATGAGATTACAG
129 ATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAG-TCTTATCTCCATGAGATTACAG
* *
37453558 CGGAATAAACTGAATAAATCCAAATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGT
193 CGGAATAAACTGAAGAAATCCAAATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGT
* * * *
37453623 GAATCTGATCTCCCTGAGATTATAACAGAGCATATT-AATGCTAGTAATCCTATTACCCTGAGAT
258 GAATCTGATCTCCCTAAGATTACAACAGAGCAGATTGAA-GCCAGTAATCCTATTACCCTGAGAT
*
37453687 TACAGTGGAACCGATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATC
322 TACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATC
* ** * * * *
37453752 AGGTCTTATTTCCCTGAGATTACT-GTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAA
387 AGGTCTAAACTCCCTGAGATT-CTAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT-AA
*
37453816 -CAATAGTGGAGC-AGATCGAAGATGGTGAATCT
450 GCAATAGTGGAGCTA-ATCGAAAATGGTGAATCT
*** * * *
37453848 TATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCAGAGATTACAGCA
* * * *
37453913 GAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGTAAGAAAATAAAGGAT
66 GAGAAAATTGAAGCAAGTAATCCTATTTCCCTGAGATTACAGTGGAGCGTAAGAAAATAAAGGAT
* * * *
37453978 CTTATCTCTCTAATGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGATATTACAGTGG
131 CTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTCCATGAGATTACAGCGG
* * ** *
37454043 AATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAAATTGTGAA
196 AATAAACTGAAGAAATCCAAATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGTGAA
** * * * * * *
37454108 TCTTCTCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCTCTTAGATTATA
261 TCTGATCTCCCTAAGATTACAACAGAGCAGATTGAAGCCAGTAATCCTATTACCCTGAGATTACA
* * * * *
37454173 GTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAATTTATAGTAGAGTAGATTGCATCAGGT
326 GTGGAACAGATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGT
*
37454238 CTAAACTCCCTGAGATTCTAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGTAATA
391 CTAAACTCCCTGAGATTCTAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATA
37454303 GTGGAGCTAATCGAAAATGGTGAATCT
456 GTGGAGCTAATCGAAAATGGTGAATCT
* ** * *
37454330 TATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAACAATCCTATTTCCCTGAGATTACAG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCAGAGATTACAG
37454393 TGGAACGGAT
Statistics
Matches: 477, Mismatches: 61, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
481 5 0.01
482 465 0.97
483 7 0.01
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (482 bp):
TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCAGAGATTACAGCA
GAGAAAATTGAAGCAAGTAATCCTATTTCCCTGAGATTACAGTGGAGCGTAAGAAAATAAAGGAT
CTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTCCATGAGATTACAGCGG
AATAAACTGAAGAAATCCAAATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGTGAA
TCTGATCTCCCTAAGATTACAACAGAGCAGATTGAAGCCAGTAATCCTATTACCCTGAGATTACA
GTGGAACAGATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGT
CTAAACTCCCTGAGATTCTAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATA
GTGGAGCTAATCGAAAATGGTGAATCT
Found at i:37454073 original size:701 final size:698
Alignment explanation
Indices: 37446614--37462911 Score: 16280
Period size: 701 Copynumber: 23.4 Consensus size: 698
37446604 NNNNAGTACT
* * * * * *
37446614 TAGAGTAGATCGCA-CAGTTCTATTATCTCCATGCGATTACAGCGGAATACACTGAA-TAATCCA
1 TAGAGTAGATCGCATCAGGTCTA--AACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCA
* *
37446677 GATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTGAATCT-CCTGAGATT
64 GATCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCT-TATCTCCCTGAGATT
* * * *
37446741 ATAACAGAG-AGATT-ATGCTAGT-ATACCTATTACCCCTGAGATTACAGTGTGGACGGATTAAA
128 ACAGCAGAGCAGATTGAAGCTAGTAAT-CCTATTA-CCCTGAGATTACAGTG-GAACGGATTAAA
37446803 ATAAAGGATATTATCTCTCTGAAGTCTACAGTAGAGTAGATCGCATCAGGTCTT-T-TCCCTGAG
190 ATAAAGGATATTATCTCTCTGAAGT-TACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAG
* *
37446866 ATTACTGTGGAATAGGCCGAGAAGAGTTCCAGATCTTGTC-TCCTGAACAATAG-GGAGCAGATC
254 ATTACTGTGGAATAGACC--GAAGAATTCCAGATCTTGTCTTCCTGAACAATAGCGGAGCAGATC
*
37446929 GAAGAT-GTGAATCTTATCTCCAAAAGATTACAGCGGAGC-AATTGAAGCCAGTAATCCTATCTC
317 GAAGATGGTGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTC
** * * *
37446992 CCTGAGATTACAGCGGAGCAAATTTAAGCCAGTAT-CTATTTGCCTGAGATTACAGTGGAGCGAA
382 CCTGAGATTACAGTAGAGCAAATTGAAGTCAGTATCCTATTTGCCTGAGATTACAGTGGAGCGTA
* * *
37447056 AG-AACTAAAGGATCTTATCTCTCTAATGATGT-TAGTAGAGTAGATCGCATCAGGTCTTAGCTC
447 AGAAAATAAAGGATCTTATCTCTCTAA-G-T-TATAGTAGAGTAGATCGCATCAAGTCTTATCTC
* *
37447119 CCTGAATTACAGTTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTG
509 CCTG----AGA-TTACAGTGGAATAGACTGAAG-AATCCAGATCCTATCTCCCTAAGCAATAGTG
* * * * * * *
37447184 GAGCAAAACGAAAATTGTGAAT-CTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAA
568 GAGCAGATCGAACATTGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAGTAA
*
37447248 TCCTATTTCCCTTAGATTAT-GTGGAACAGATT-AAATAATGGATCTTAT-TCTCTGAAA-TTAC
633 TCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCT-AAAGTTAC
37447309 AG
697 AG
* * *
37447311 TAGAGTAGAT-GCATCAGGTCTAAACTCCCTGAGATTCCAGTGGAATAGAC-GAAGAATTCCAGA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
* *
37447374 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCGAAAATGGTGAATCTTAGCTCCCTGAGATTACA
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACA
* * * * *
37447439 GTAGAGCAGATTGAAGC-AGCAATCCTATTTCCCTGAGATTATAGTGGAACGGATT-AGATAAAG
131 GCAGAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAAG
* * *
37447502 GATCTTATCTATCTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTA-TA
196 GATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACT-
* * * * ** * * * * *
37447566 GTGGAATAGACCGGAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAG-TGATTGAAGCTA
260 GTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGA-ACAATAGCGGAGCAGATCGAAGATG
* * * * * * *
37447630 GT-AATCCTATCTCCCTAAGATTACAGTGGAGC-GATT-AA--AAGTAAAGATCTTATCTCTCTG
324 GTGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATTGAAGCCAGT--A-ATCCTATCTCCCTG
* * * * * **
37447690 A-AGTTACAGTAGAGTAGATCG-A-TCAGGT-TCTTATCT-CTCTG-GATTACAGTGGAATAG-A
386 AGA-TTACAGTAGAGCAAATTGAAGTCA-GTATCCTATTTGC-CTGAGATTACAGTGG-AGCGTA
* ** * * * ** * * *
37447748 CACGAATAGTTCA-GATCTTGTCTCCCTGAGCAATAGTGGAGCAGATCAAAGACAGTGAA-TCTT
447 -A-GAA-AATAAAGGATCTTATCTCTCTAAGTTATAGTAGAGTAGATC---G-CA-TCAAGTCTT
* * * * ** ** ** *
37447811 TTCTCCATAAGATTACAGCGGAGCAGA-TGAAG---CCAGTTATCCTATCTCGCCTGGGTTACAG
504 ATCTCCCTGAGATTACAGTGGAATAGACTGAAGAATCCAG--ATCCTATCTC-CCTAAGCAATAG
* * *** * *
37447872 CGGAGCAGATTGAACCCAGT-AATCCTATCTCTCAGAGATTACAGCAG-GAAAATTGAAG-CAGT
566 TGGAGCAGATCGAACATTGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAGT
*
37447934 AATCCTATTTCCC-T-GA-TATA-TAGGAGCAGA-T-AAATAAAGGATCTTATCTCTCTAAAGTT
631 AATCCTATTTCCCTTAGATTATAGT-GGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTT
37447993 ACAG
695 ACAG
* * * * * * *
37447997 TAGAGTAGATCGCATCAGTTCTTATCTCCATGAGATT--A-CGGAATAAACTGAATAAATCCAAA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
* * *
37448059 TCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCCCTGAGATTATA
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACA
* * *
37448124 ACAGAGCATATT-ATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAA-GGATTAAAATAAAG
131 GCAGAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAAG
* *
37448187 GATA-TATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTTATTTCCCTGAGATTACT
196 GATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC-TTATCTCCCTGAGATTACT
* * *
37448251 GTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATAGTGGAGCA-ATCGAAGATGG
260 GTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGAACAATAGCGGAGCAGATCGAAGATGG
37448315 TGAATCTTATCT-CCAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAG-T
325 TGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGAT
** * *
37448378 TACAGCGGAGCAAATTTAAG-CAGTAATCCTATTTGCCTGATATTACA-TGGAGCGTAAGAAAAT
390 TACAGTAGAGCAAATTGAAGTCAGT-ATCCTATTTGCCTGAGATTACAGTGGAGCGTAAGAAAAT
* *
37448441 AAAGGATCTTATCTCTCTAATGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGATATT
454 AAAGGATCTTATCTCTCTAA-GTTATAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGATT
* *
37448506 ACAGT-GAATAGACTGAAGAAATCCAGATCTTATCT-CCTAAGCAATAGTGGAAGCAAATCGAA-
518 ACAGTGGAATAGACTGAAG-AATCCAGATCCTATCTCCCTAAGCAATAGTGG-AGCAGATCGAAC
* * * * * *
37448568 ATTGTGAATCTTCTCTCCCTAAGATTACAGCGGGAGACAGATTGAAGCCAGTAATCCTATTTCTC
581 ATTGTGAATCCTATCTCTCTGAGATTACAGC-GGAGA-AAATTGAAGCCAGTAATCCTATTTCCC
* *
37448633 TTAGATTATAGTGGAACAGATTAAAAT-AAGGATCTTATCTCTCTGAATTGTACAG
644 TTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGT-TACAG
* * * * *
37448688 TAGAGTAGATTGCATCA-GTTTCAAACTCCCTGAGATT-CTAGTGGAATAGACCGAAGAATTCCA
1 TAGAGTAGATCGCATCAGGTCT-AAACTCCCTGAGATTAC-AGCGGAATAGACTGAAGAAATCCA
*
37448751 GATCTTATCTTCCCTAAG-AATAGTGGAGCTAATCGAAAATGGTGAATCTTATCT-CCTGAGATT
64 GATCTTATC-TCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATT
* * *
37448814 ACAGCAGAGCAGATTGAAGC-AGCAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAGAATA
128 ACAGCAGAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATA
* *
37448878 AAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGGT-TTATCTCCCTGAGATTA
193 AAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTA
* * * * ** * *
37448942 -TAGTGGAATAGACCGGAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCTGAT--AAG
258 CT-GTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGA-ACAATAGCGGAGCAGATCGAAG
* * * * * ** * *** * *
37449004 CT--AGAATCCTATCTCCCTAAGATTACAGTGGAGTGAATTAAAATAAAG-GATCTTATCT-CCT
321 ATGGTGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATT-GAAGCCAGTAATCCTATCTCCCT
* * * * * * **
37449065 GA-AGTTACAGTAGAGTAGATCGCA-TCAG-GT-CTATCT-CTCTGAGATTACAGTGGATAG-AC
385 GAGA-TTACAGTAGAGCAAATTGAAGTCAGTATCCTATTTGC-CTGAGATTACAGTGGAGCGTA-
* * ** * * * ** * * *
37449124 CGAATAGTTCCA-GATCTTGTCTCCCTGAGCAATAGTGGAGCAGATCAAAGACAGTGAA-TCTT-
447 AGAA-A-ATAAAGGATCTTATCTCTCTAAGTTATAGTAGAGTAGATC---G-CA-TCAAGTCTTA
* * * * ** * *
37449186 TTTCCATAAGATTACAGCGGAGCAGA-TGAAG---CCAGTAATTCCTATCT-CCT--GGATTACA
505 TCTCCCTGAGATTACAGTGGAATAGACTGAAGAATCCAG--A-TCCTATCTCCCTAAGCA--ATA
* * *** * *
37449244 GCGGAGCAGATTGAACCCAGT-AATCCTATCTCTCTGAGATTACAGCAGAGAAAATTGAAGCAAG
565 GTGGAGCAGATCGAACATTGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAG
* * * * *
37449308 TAATCCTATTTCCCTGATATTATAGTGGAGCAGATGAAAATAAAGGATC-TATCTCTCTGAAGTT
630 TAATCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTT
37449372 ACAG
695 ACAG
* * * * *
37449376 TAGAGTAGATCGCATCAGTTCT-ATCT-CATGAGATTACAGCGGAATA-ATTGAATAAATCCAGA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
* *
37449438 TCTTAT-TCCCTAAGCAATAGTGGAGCTAAT-AAAAATGGTGAATCTGATCTCCCTGAGATTATA
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACA
* *
37449501 ACAGAGCATATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAA
131 GCAGAGCAGATTGAA-GCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAA
*
37449565 GGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATTTCCCTGAGATTACT
195 GGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACT
* * *
37449630 GTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATAGTGGAGCAGATCGAAGATGG
260 GTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGAACAATAGCGGAGCAGATCGAAGATGG
*
37449695 TGAATC-TATCTCCAAAAGATTACAGCGGAGC-AATTGAAGCCAGTAATCCTATC-CCCTGAGAT
325 TGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGAT
* * * * *
37449757 TACAGCAGAGCAAATTTAAGCCAGTATCCTATTTGCCTGAGATTACAGTGGAGCGCATGAAAATA
390 TACAGTAGAGCAAATTGAAGTCAGTATCCTATTTGCCTGAGATTACAGTGGAGCGTAAGAAAATA
* * * *
37449822 AAGGATCTTATCTCTCTAATGTTACAGTAGAGTAGATCGAATCAGGTCTTATCTCCCTGATATTA
455 AAGGATCTTATCTCTCTAA-GTTATAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGATTA
*
37449887 CAGTGGAATAGACTGAAGAAATCCAGATCTTATCT-CCTAAGCAATAGTGGAGCA-ATCGAA-AT
519 CAGTGGAATAGACTGAAG-AATCCAGATCCTATCTCCCTAAGCAATAGTGGAGCAGATCGAACAT
* * * * * *
37449949 TGTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAATCCAGTAATCCTATTTCCCTTAG
583 TGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAGTAATCCTATTTCCCTTAG
37450014 ATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAA-TTACAG
648 ATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAG
* * * *
37450064 TAGAGTAGAT-GCATCAGGTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
*
37450128 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTACA
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACA
* * * *
37450193 GCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAGAATAAAG
131 GCAGAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAAG
* *
37450258 GATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCT-CCTGAGATTA-TA
196 GATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACT-
* * * ** * * * * *
37450321 GTGGAATAGACCGAAGAATT-TAGATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTA
260 GTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGA-ACAATAGCGGAGCAGATCGAAGATG
* * * * * *** * * *
37450385 GT-AATCCTATCTCCCTAAGATTA-AGTGGAGCGAATTAAAATAAAG-GATCTTATCTCTCTGA-
324 GTGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATT-GAAGCCAGTAATCCTATCTCCCTGAG
* * * * * * * *
37450446 AGTTACA-TAGAGTAGATCGCA-TCAG-GTCTTATCT-CTCTGAGATTACAGTGGA--ATAGACC
388 A-TTACAGTAGAGCAAATTGAAGTCAGTATCCTATTTGC-CTGAGATTACAGTGGAGCGTA-A--
* ** * * * ** * * * *
37450505 GAATAGTTCCA-GATCTTGTCTCCCTGAGCAATAGTGGAGCAGATCGAAGACAGTGAA-ACTT-T
448 GAA-A-ATAAAGGATCTTATCTCTCTAAGTTATAGTAGAGTAGATC---G-CA-TCAAGTCTTAT
* * * ** * * * *
37450567 -TCCCATTAAGAGTACAGCGGAGCAGATTGAAG---CCAGTAATCCTATCTCCCT-GGGATTACA
506 CTCCC--TGAGATTACAGTGGAATAGACTGAAGAATCCAG--ATCCTATCTCCCTAAGCA--ATA
* * * *** *
37450627 GCGGAGCAGATTGTACCCAGT-AAT-CTATCTCTCTGAGATTACAGCGGA-AAAATTGAAGCAAG
565 GTGGAGCAGATCGAACATTGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAG
* * * *
37450689 TAATCCTATTTCCCTGATATTATAGTGGAGC-GATGAAAAT--AGGATCTTATCTCTCTAAAGTT
630 TAATCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTT
37450751 A-AG
695 ACAG
* *
37450754 TAGAGTAGATCGCATCAGGTCT--ACTCCATGAGATTACAGCGGAATA-ACTGAATAAATCCAGA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
* *
37450816 TCTTATCT-CCTAAG-AATAGTGGAGCTAATAAAAAATGGTGAATCTGT-TCTCCCTGAGATTAT
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCT-TATCTCCCTGAGATTAC
* *
37450878 AACAGAGCATATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATT-AAAT-A
130 AGCAGAGCAGATTGAA-GCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAA
*
37450940 AGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGC-TCAGGTCTTATTTCCCTGAGATTAC
194 AGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTAC
* * *
37451004 TGTGGAAATAG-GCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATAGTGGAGCAGATCGAAGAT
259 TGTGG-AATAGACCGAAGAATTCCAGATCTTGTCTTCCTGAACAATAGCGGAGCAGATCGAAGAT
37451068 GGTGAATCTTATCT-CCAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCT-CCTGAG
323 GGTGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAG
* * * *
37451131 ATTACAGTGGAGCAAATTTAAG-CAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAA
388 ATTACAGTAGAGCAAATTGAAGTCAGT-ATCCTATTTGCCTGAGATTACAGTGGAGCGTAAGAAA
* * *
37451195 ATAAAGGATCTTTATCTCTCTAATGTTACAGTAGAGTAGATCGCATCAGGT-TTATCTCCCTGAT
452 ATAAAGGATC-TTATCTCTCTAA-GTTATAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAG
*
37451259 ATTACAGTGGAATAGACTGAAGAATCCAGAT-CTATCTCCCTAAGCAATAGTGGAGCAAATCGAA
515 ATTACAGTGGAATAGACTGAAGAATCCAGATCCTATCTCCCTAAGCAATAGTGGAGCAGATCGAA
* * * **
37451323 AATTGTGAAT-CTCTCTTCCCTGAGATTACAGCGGAGCATTATTG-AG-CAGTAATCCTATTTCC
580 CATTGTGAATCCTATC-TCTCTGAGATTACAGCGGAG-AAAATTGAAGCCAGTAATCCTATTTCC
37451385 CTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCT-TCTGAAA-TTACAG
643 CTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCT-AAAGTTACAG
* * * * *
37451440 TAGAGTAGATTGCATCAGGTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
* *
37451505 TCTTATCTCCCTAAGC-ATAGTGGAGCT-ATCGAAAATGGTGAATCTTATCTGCCTG-GATTACA
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACA
* * * * *
37451567 GCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAGT-GAACAGATTAGAATAAAG
131 GCAGAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAAG
* *
37451631 GATCTTATCTCT-TTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCT-CCTGAGATTA-TA
196 GATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACT-
* * * * * * * * *
37451693 GTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGA-TACAGCGGAGCTGATTGAAGCTA
260 GTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGA-ACAATAGCGGAGCAGATCGAAGATG
* * * *** * * *
37451757 GT-AATCTTATCTCCCTAAGATTACAGTGGAGCGAATT-AAATAAG-GATCTTATCTCTCTGA-A
324 GTGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGA
* * * * * * *
37451818 GTTACAGTAGAGTAAGATCGCA-TCAG-GTCTTATAAT--CTGAGATTACAGTGGA--ATAGACC
389 -TTACAGTAGAGCAA-ATTGAAGTCAGTATCCTAT-TTGCCTGAGATTACAGTGGAGCGTA-A--
* ** * * ** * * *
37451877 GAATAGTTCCA-GATCTTGTCTC-CTGAGCAATAGTGGAGCAGATCGAAGACAGTGAA-TCTT-T
448 GAA-A-ATAAAGGATCTTATCTCTCTAAGTTATAGTAGAGTAGATC---G-CA-TCAAGTCTTAT
* * * ** * * * * *
37451938 CTCCATAAGATTACAGCGGAGCAGATTGAAG---CCAGTAATCCT-TCTCCC--GGGATTACAGC
506 CTCCCTGAGATTACAGTGGAATAGACTGAAGAATCCAG--ATCCTATCTCCCTAAGCA--ATAGT
* *** **
37451997 GGAGCAGATTGAACCCAGT--ATCCTATCTCTCTGAGATTATACAGCGGAGAAAATTGAAGGAAG
567 GGAGCAGATCGAACATTGTGAATCCTATCTCTCTGAGA-T-TACAGCGGAGAAAATTGAAGCCAG
* * * *
37452060 TAATCCTATTTCCCTGATATTATAGTAGAGCAGA-TAAAAT-AAGGATCTTATCTCTCTAAAGTT
630 TAATCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTT
37452123 ACAG
695 ACAG
* * * * * *
37452127 TAGAGTAGATCGCATCAGGTCTTATCT-CCTGAGATTGCAGCGGAATAAACTAAATAAATCCAGA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
* * *
37452191 TCTTATCTCCCTAAGC-ATAGTGGAGCTAATAAAAAATGGTGAATCTAATCTCCCTGAGATTATA
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACA
*
37452255 ACAGAGCAGATAT-AATGCTAGTAATCCTATTACCCTGAGATTACAGT-GAACGGATTAAAAATA
131 GCAGAGCAGAT-TGAA-GCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATT-AAAATA
*
37452318 AAGG--ATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATTTCCCTGAGATTA
193 AAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTA
* * *
37452381 CTGTGGAATAGGCCGAAGAGTT-CAGATCTTGTCTTCCTGAACAATAGGGGAGCAGATCGAAGAT
258 CTGTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGAACAATAGCGGAGCAGATCGAAGAT
* *
37452445 GGTGAATCTTATCTCCAAAAGATTATAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAG
323 GGTGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAG
** * * *
37452510 ATTACAGCGGAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGAAAGAAA
388 ATTACAGTAGAGCAAATTGAAGTCAGT-ATCCTATTTGCCTGAGATTACAGTGGAGCGTAAGAAA
* * *
37452575 CTAAAGGATCTTATCTCTCTAATGTT-T-GTAGAGTAGATCGCATCAGGTCTTATCTCCCTGATA
452 ATAAAGGATCTTATCTCTCTAA-GTTATAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGA
* *
37452638 TTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCT--CTAAGCAATAGTGGAGCA-AACGAA
516 TTACAGTGGAATAGACTGAAG-AATCCAGATCCTATCTCCCTAAGCAATAGTGGAGCAGATCGAA
* * *
37452700 AATTGTGAAT-CT-TCTCTCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCC
580 CATTGTGAATCCTATCTCT-CTGAGATTACAGCGGAGAAAATTGAAGCCAGTAATCCTATTTCCC
*
37452763 TTAGATTATAGTGGAACAGATTAAAATAATGGATCTTATCTCTCTGAAA-TTACAG
644 TTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCT-AAAGTTACAG
* * * * *
37452818 TAGAGTAGATTGCATCAGGTCTAAACTCCCTGAGATTCCAGTGGAATAGACCG-AGAATTCCAGA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
*
37452882 TCTTAT-TCTCCTAAGCAATAGTGGAGCTAATC-GAAATGGTGAATCTTATCTCCCTGAGATTAC
66 TCTTATCTC-CCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTAC
* * * *
37452945 AGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAGAATAAA
130 AGCAGAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAA
* * *
37453010 GGATCTTATCTATCTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTA-T
195 GGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACT
* * * * ** * * * *
37453074 AGTGGAATAGACCGGAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCT
260 -GTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGA-ACAATAGCGGAGCAGATCGAAGAT
* * * * * * *** * * *
37453139 AGT-AATCCTATCTCCCTAAGATTACAGTGGAGCGAATTAAAATAAAG-GATCTTATCTCTCTGA
323 GGTGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATT-GAAGCCAGTAATCCTATCTCCCTGA
* * * * * * * *
37453202 -AGTTACAGTAGAGTAGATCGCA-TCAG-GTCTTATCT-CTCTGAGATTACAGTGGA--ATAGAC
387 GA-TTACAGTAGAGCAAATTGAAGTCAGTATCCTATTTGC-CTGAGATTACAGTGGAGCGTA-A-
* ** * * * ** * * * *
37453261 CGAATAGTTCCA-GATCTTGTCTCCCTGAGCAATAGTGGAGCAGATCAAAGACAGTGAA-TCTTT
448 -GAA-A-ATAAAGGATCTTATCTCTCTAAGTTATAGTAGAGTAGATC---G-CA-TCAAGTCTTA
* * * ** * * * *
37453324 TCTCCATAAGATTACAGCGGAGCAGATTGAAG---CCAGTTATCCTATCTCCCT-GGGATTACAG
505 TCTCCCTGAGATTACAGTGGAATAGACTGAAGAATCCAG--ATCCTATCTCCCTAAGCA--ATAG
* * *** * * *
37453385 CGGAGCAGATTGAACCGAGT-AATCCTATCTCTCAGAGATTACAGCAGAGAAAATTGAAGCAAGT
566 TGGAGCAGATCGAACATTGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAGT
* * * *
37453449 AATCCTATTTCCCTGATATTATAGTGGAGCAGATGAAAATAAAGGATCTTATCTCTCTAAAGTTA
631 AATCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTA
37453514 CAG
696 CAG
* * * * * * *
37453517 TAGAGTAGATCGCATCAGTTCTTATCTCCATGAGATTACAGCGGAATAAACTGAATAAATCCAAA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
* * *
37453582 TCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCCCTGAGATTATA
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACA
* * *
37453647 ACAGAGCATATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACCGATTAAAATAAA
131 GCAGAGCAGATTGAA-GCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAA
* *
37453711 GGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATTTCCCTGAGATTACT
195 GGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACT
* * *
37453776 GTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATAGTGGAGCAGATCGAAGATGG
260 GTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGAACAATAGCGGAGCAGATCGAAGATGG
*
37453841 TGAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGAT
325 TGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGAT
** * *
37453906 TACAGCGGAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGTAAGAAAAT
390 TACAGTAGAGCAAATTGAAGTCAGT-ATCCTATTTGCCTGAGATTACAGTGGAGCGTAAGAAAAT
* *
37453971 AAAGGATCTTATCTCTCTAATGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGATATT
454 AAAGGATCTTATCTCTCTAA-GTTATAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGATT
* * *
37454036 ACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAAA
518 ACAGTGGAATAGACTGAAG-AATCCAGATCCTATCTCCCTAAGCAATAGTGGAGCAGATCGAACA
* * * * * * *
37454101 TTGTGAATCTTCTCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCTCTTA
582 TTGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAGTAATCCTATTTCCCTTA
* * *
37454166 GATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAATTTATAG
647 GATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAG
* * * *
37454218 TAGAGTAGATTGCATCAGGTCTAAACTCCCTGAGATT-CTAGTGGAATAGACCGAAGAATTCCAG
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTAC-AGCGGAATAGACTGAAGAAATCCAG
* *
37454282 ATCTTATCTCCCTAAGTAATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTAC
65 ATCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTAC
* ** * *
37454347 AGCAGAGCAGATTGAAGCCAACAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAGAATAAA
130 AGCAGAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAA
* *
37454412 GGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTA-T
195 GGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACT
* * * ** * * * *
37454476 AGTGGAATAGACC-AGAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGC
260 -GTGGAATAGACCGA-AGAATTCCAGATCTTGTCTTCCTGA-ACAATAGCGGAGCAGATCGAAGA
* * * * * * *** * * *
37454540 TAGT-AATCCTATCTCCCTAAGATTACAGTGGAGCGAATTAAAATAAAG-GATCTTATCTCTCTG
322 TGGTGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATT-GAAGCCAGTAATCCTATCTCCCTG
* * * * * * * *
37454603 A-AGTTACAGTAGAGTAGATCGCA-TCAG-GTCTTATCT-CTCTGAGATTACAGTGGA--ATAGA
386 AGA-TTACAGTAGAGCAAATTGAAGTCAGTATCCTATTTGC-CTGAGATTACAGTGGAGCGTA-A
* ** * * * ** * * *
37454662 CCGAATAGTTCCA-GATTTTGTCTCCCTAAGCAATAGTGGAGCAGATCAAAGACAGTGAA-TCTT
448 --GAA-A-ATAAAGGATCTTATCTCTCTAAGTTATAGTAGAGTAGATC---G-CA-TCAAGTCTT
* * * * ** * * * *
37454725 TTCTCCATAAGATTACAGCGGAGCAGATTGAAG---CCAGTAATCCTATCTCCCT-GGGATTACA
504 ATCTCCCTGAGATTACAGTGGAATAGACTGAAGAATCCAG--ATCCTATCTCCCTAAGCA--ATA
* * *** * *
37454786 GCGGAGCAGATTGAACCCAGT-AATCCTATCTCTCTGAGATTACAGCAGAGAAAATTGAAGCAAG
565 GTGGAGCAGATCGAACATTGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAG
* * * *
37454850 TAATCCTATTTCCCTGATATTATAGTGGAGCAGATGAAAATAAAGGATCTTATCTCTCTAAAGTT
630 TAATCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTT
37454915 ACAG
695 ACAG
* * * * *
37454919 TAGAGTAGATCGCATCAGGTCCT-ATCTCCATGAGATTACAGCGGAATAAATTGAATAAATCCAG
1 TAGAGTAGATCGCATCAGGT-CTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAG
* * *
37454983 ATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCCCTGAGATTAT
65 ATCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTAC
* *
37455048 AACAGAGCATATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAA
130 AGCAGAGCAGATTGAA-GCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAA
*
37455112 AGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATTTCCCTGAGATTAC
194 AGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTAC
* * * *
37455177 TTTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATAGTGGAGCAGATCGAAGATG
259 TGTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGAACAATAGCGGAGCAGATCGAAGATG
* *
37455242 GTGAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCTTGAGA
324 GTGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGA
* * * * *
37455307 TTACAGCAGAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGCATGAAAA
389 TTACAGTAGAGCAAATTGAAGTCAGT-ATCCTATTTGCCTGAGATTACAGTGGAGCGTAAGAAAA
* * * *
37455372 TAAAGGATCTTATCTCTCTAATGTTACAGTAGAGTAGATCGAATCAGGTCTTATCTCCCTGATAT
453 TAAAGGATCTTATCTCTCTAA-GTTATAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGAT
* * *
37455437 TACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAA
517 TACAGTGGAATAGACTGAAG-AATCCAGATCCTATCTCCCTAAGCAATAGTGGAGCAGATCGAAC
* * * * * * *
37455502 ATTGTGAATCTTCTCTCCCTGAGATTACAGCGAAGCAGATTGAATCCAGTAATCCTATTTCCCTT
581 ATTGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAGTAATCCTATTTCCCTT
*
37455567 AGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAATTACAG
646 AGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAG
* * * * *
37455620 TAGAGTAGATTGCATCAGGTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
*
37455685 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTACA
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACA
* * * *
37455750 GCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAGAATAAAG
131 GCAGAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAAG
* *
37455815 GATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTA-TA
196 GATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACT-
** * * ** * * * * *
37455879 GTGGAATAGACCGAAGAATTTTAGATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTA
260 GTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGA-ACAATAGCGGAGCAGATCGAAGATG
* * * * * * * *** * * *
37455944 GT-AATCCTATCTCCCTAATATTAAAGTGGAGCGAATTAAAATAAAG-GATCTTATCTCTCTGA-
324 GTGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATT-GAAGCCAGTAATCCTATCTCCCTGAG
* * * * * * * *
37456006 AGTTACA-TAGAGTAGATCGCA-TCAG-GTCTTATCT-CTCTGAGATTACAGTGGA--ATAGACC
388 A-TTACAGTAGAGCAAATTGAAGTCAGTATCCTATTTGC-CTGAGATTACAGTGGAGCGTA-A--
* ** * * * ** * * * * *
37456065 GAATAGTTCCA-GATCTTGTCTCCCTGAGCAATAGTGGAGCAGATCGAAGACAGTGAA-ACTTTT
448 GAA-A-ATAAAGGATCTTATCTCTCTAAGTTATAGTAGAGTAGATC---G-CA-TCAAGTCTTAT
* * * ** * * * * *
37456128 CTCCATAAGATTACAGCGGAGCAGATTGAAG---CCAGTAATCCTATCTCCCT-GGGATTACAGC
506 CTCCCTGAGATTACAGTGGAATAGACTGAAGAATCCAG--ATCCTATCTCCCTAAGCA--ATAGT
* *** **
37456189 GGAGCAGATTGAACCCAGT-AATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGTAAGTA
567 GGAGCAGATCGAACATTGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAGTA
* * * * *
37456253 ATCATATTTCCCTGATATTATAGTGGAGCAGATGAAAATAAAGGATCTTATCTCTCTAAAGTTAC
632 ATCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTAC
37456318 AG
697 AG
* * * *
37456320 TAGAGTAGATCGCATCAGGTCT-TACTCCATGAGATTACAGCGGAATAAACTGAATAAATCCAGA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
* *
37456384 TCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTGT-TCTCCCTGAGATTAT
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCT-TATCTCCCTGAGATTAC
* *
37456448 AACAGAGCATATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAA
130 AGCAGAGCAGATTGAA-GCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAA
*
37456512 AGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATTTCCCTGAGATTAC
194 AGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTAC
* * *
37456577 TGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATAGTGGAGCAGATCGAAGATG
259 TGTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGAACAATAGCGGAGCAGATCGAAGATG
*
37456642 GTGAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGA
324 GTGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGA
** * * * * *
37456707 TTACAGCGGAGCAAATTTAAGCCTGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAAA
389 TTACAGTAGAGCAAATTGAAGTCAGT-ATCCTATTTGCCTGAGATTACAGTGGAGCGTAAGAAAA
* * *
37456772 TAAAGGATCTTATCTCTCTAATGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGATAT
453 TAAAGGATCTTATCTCTCTAA-GTTATAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGAT
* * *
37456837 TACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAA
517 TACAGTGGAATAGACTGAAG-AATCCAGATCCTATCTCCCTAAGCAATAGTGGAGCAGATCGAAC
* * * * *
37456902 ATTGTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTT
581 ATTGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAGTAATCCTATTTCCCTT
37456967 AGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAA-TTACAG
646 AGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCT-AAAGTTACAG
* * * * *
37457020 TAGAGTAGATTGCATCAGGTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
*
37457085 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTACA
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACA
* * * * *
37457150 GCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAGAATAAAG
131 GCAGAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAAG
* *
37457215 GATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTA-TA
196 GATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACT-
* * * ** * * * * *
37457279 GTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTA
260 GTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGA-ACAATAGCGGAGCAGATCGAAGATG
* * * * *** * * *
37457344 GT-AATCTTATCTCCCTAAGATTACAGTGGAGCGAATTAAAATAAAG-GATCTTATCTCTCTGA-
324 GTGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATT-GAAGCCAGTAATCCTATCTCCCTGAG
* * * * * * * ** *
37457406 AGTTACAGTAGAGTAGATCGCA-TCAG-GTCTTATATATCTGAGATTACAGTGGA--ATAGACCG
388 A-TTACAGTAGAGCAAATTGAAGTCAGTATCCTATTTGCCTGAGATTACAGTGGAGCGTA-A--G
* ** * * * ** * * * *
37457467 AATAGTTCCA-GATCTTGTCTCCCTGAGCAATAGTGGAGCAGATCGAAGACAGTGAA-TCTTTTC
449 AA-A-ATAAAGGATCTTATCTCTCTAAGTTATAGTAGAGTAGATC---G-CA-TCAAGTCTTATC
* * * ** * * * * *
37457530 TCCATAAGATTACAGCGGAGCAGATTGAAG---CCAGTAATCCTATCTCCCT-GGGATTACAGCG
507 TCCCTGAGATTACAGTGGAATAGACTGAAGAATCCAG--ATCCTATCTCCCTAAGCA--ATAGTG
* *** *
37457591 GAGCAGATTGAACCCAGT-AATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAA
568 GAGCAGATCGAACATTGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAGTAA
* * * * *
37457655 TCCTATTTCCCTGATATTATAGTAGAGCAGATAAAAATAAAGGATCTTATCTCTCTAAAGTTACA
633 TCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACA
37457720 G
698 G
* * * * * * *
37457721 TAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTGCAGCGGAATAAACTAAATAAATCCAGA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
* * *
37457786 TCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTAATCTCCCTGAGATTATA
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACA
*
37457851 ACAGAGCAGATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAA
131 GCAGAGCAGATTGAA-GCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAA
* * *
37457915 GGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATTTCCCTGAAATTACT
195 GGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACT
* * *
37457980 GTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATAGGGGAGCAGATCGAAGATGG
260 GTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGAACAATAGCGGAGCAGATCGAAGATGG
*
37458045 TGAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGAT
325 TGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGAT
** * * * *
37458110 TACAGCGGAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAAAT
390 TACAGTAGAGCAAATTGAAGTCAGT-ATCCTATTTGCCTGAGATTACAGTGGAGCGTAAGAAAAT
* * *
37458175 AAAGGATCTTATCTCTCTAATGTTACAGTAGAGTAGATCGCATCAGGTCTTATCT--CTGATATT
454 AAAGGATCTTATCTCTCTAA-GTTATAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGATT
* * *
37458238 ACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAAA
518 ACAGTGGAATAGACTGAAG-AATCCAGATCCTATCTCCCTAAGCAATAGTGGAGCAGATCGAACA
* * * * *
37458303 TTGTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTA
582 TTGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAGTAATCCTATTTCCCTTA
*
37458368 GATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAATTACAG
647 GATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAG
* * * * *
37458420 TAGAGTAGATTGCATCAGGTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
*
37458485 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTACA
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACA
* * * * *
37458550 GCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAGAATAAAG
131 GCAGAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAAG
* * *
37458615 GATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTTCCTGAGATTA-TA
196 GATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACT-
** * * ** * * * * *
37458679 GTGGAATAGACCGAAGAATTTTAGATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTA
260 GTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGA-ACAATAGCGGAGCAGATCGAAGATG
* * * * *** ** * *
37458744 GT-AATCCTATCTCCCTAAGATTACAGTGGAGCGAATT-AAAATAAAAGATCTTATCTCTCTGA-
324 GTGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATTGAAGCCAGTA-ATCCTATCTCCCTGAG
* * * * * * * * *
37458806 AGTTACAGTAAAGTAGATCGCA-TCAG-GTCTTATCT-CTCTGAGATTACAGTGGA--ATAGACT
388 A-TTACAGTAGAGCAAATTGAAGTCAGTATCCTATTTGC-CTGAGATTACAGTGGAGCGTA-A--
* ** * * * ** * * * *
37458866 GAATAGTTCCA-GATCTTGTCTCCCTGAGCAATAGTGGAGCAGATCGAAGACAGTGAA-TCTTTT
448 GAA-A-ATAAAGGATCTTATCTCTCTAAGTTATAGTAGAGTAGATC---G-CA-TCAAGTCTTAT
* * * ** * * * * *
37458929 CTCCATAAGATTACAGCGGAGCAGATTGAAGCCAAT--A-ATCCTATCTCCCT-GGGATTACAGC
506 CTCCCTGAGATTACAGTGGAATAGACTGAAG--AATCCAGATCCTATCTCCCTAAGCA--ATAGT
* *** *
37458990 GGAGCAGATTGAACCCAGT-AATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCAAGTA
567 GGAGCAGATCGAACATTGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAGTA
* * * * *
37459054 ATCCTATTTCCCTGATATTATAGTAGAGCAGATAAAAATAAAGGATCTTATCTCTCTAAAGTTAC
632 ATCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTAC
37459119 AG
697 AG
* * * * *
37459121 TAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTACAGCGGAATAAACTGAATAAATCCAGA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
* * * *
37459186 TCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTAATCTCCCTGAGACTATA
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACA
* *
37459251 ACAGAGCAGATT-AATGCTAGTAATCCTATTACCCTGAGTTTACAGTGGAACGGATTAAAATAAA
131 GCAGAGCAGATTGAA-GCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAA
* * * *
37459315 GGATATTATCTCTGTGAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATTTCCCTGAAATTACT
195 GGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACT
* * *
37459380 GTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATAGTGGAGCAGATCGAAGATGG
260 GTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGAACAATAGCGGAGCAGATCGAAGATGG
*
37459445 TGAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGAT
325 TGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGAT
** * * * *
37459510 TACAGCGGAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAAAT
390 TACAGTAGAGCAAATTGAAGTCAGT-ATCCTATTTGCCTGAGATTACAGTGGAGCGTAAGAAAAT
* * *
37459575 AAAGGATCTTATCTCTCTAATGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGATATT
454 AAAGGATCTTATCTCTCTAA-GTTATAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGATT
* * *
37459640 ACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAAA
518 ACAGTGGAATAGACTGAAG-AATCCAGATCCTATCTCCCTAAGCAATAGTGGAGCAGATCGAACA
* * * * * *
37459705 TTTTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTA
582 TTGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAGTAATCCTATTTCCCTTA
37459770 GATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAA-TTACAG
647 GATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCT-AAAGTTACAG
* * * * *
37459822 TAGAGTAGATTGCATCAGGTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
* *
37459887 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGAATACA
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACA
* * * * *
37459952 GCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAGAATAAAG
131 GCAGAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAAG
* *
37460017 GATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTA-TA
196 GATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACT-
* * * ** * * * * *
37460081 GTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTA
260 GTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGA-ACAATAGCGGAGCAGATCGAAGATG
* * * * * * *** * * *
37460146 GT-AATCCTATCTCCCTAAGATTATAGTGGAGCGAATTAAAATAAAG-GATCTTATCTCTCTGA-
324 GTGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATT-GAAGCCAGTAATCCTATCTCCCTGAG
* * * * * * * *
37460208 AGTTACAGTAGAGTAGATCGCA-TCAG-GTCTTATCT-CTCTGAGATTACAGTGGA--ATAGACT
388 A-TTACAGTAGAGCAAATTGAAGTCAGTATCCTATTTGC-CTGAGATTACAGTGGAGCGTA-A--
* ** * * * ** * * * *
37460268 GAATAGTTCCA-GATCTTGTCTCCCTGAGCAATAGTGGAGCAGATCGAAGACAGTGAA-TCTTTT
448 GAA-A-ATAAAGGATCTTATCTCTCTAAGTTATAGTAGAGTAGATC---G-CA-TCAAGTCTTAT
* * ** * * * *
37460331 CTCCAT-AGGATTACAGCGGAGCAGATTGAAG---CCAGTAATCCTATCTCCCT-GGGATTACAG
506 CTCCCTGA-GATTACAGTGGAATAGACTGAAGAATCCAG--ATCCTATCTCCCTAAGCA--ATAG
* * *** *
37460391 CGGAGCAGATTGAACCCAGT-AATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCAAGT
566 TGGAGCAGATCGAACATTGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAGT
** * * * * *
37460455 AATCCTATAACCCTGATATTATAGTAGAGCAGATAAAAATAAAGGATCTTATCTCTCTAAAGTTA
631 AATCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTA
37460520 CAG
696 CAG
* * * * *
37460523 TAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTACAGCGGAATAAACTGAATAAATCCAGA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
* * *
37460588 TCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTAATCTCCCTGAGATTATA
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACA
* *
37460653 ACAGAGCAGATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAATGGATTAAAATAAA
131 GCAGAGCAGATTGAA-GCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAA
* * *
37460717 GGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATTTCCCTGAAATTACT
195 GGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACT
* * *
37460782 GTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATAGTGGAGCAGATCGAAGATGG
260 GTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGAACAATAGCGGAGCAGATCGAAGATGG
**
37460847 TGAATCTTATCTCAAAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGAT
325 TGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGAT
** * * * *
37460912 TACAGCGGAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAAAT
390 TACAGTAGAGCAAATTGAAGTCAGT-ATCCTATTTGCCTGAGATTACAGTGGAGCGTAAGAAAAT
* * *
37460977 AAAGGATCTTATCTCTCTAATGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGATATT
454 AAAGGATCTTATCTCTCTAA-GTTATAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGATT
* * *
37461042 ACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAAA
518 ACAGTGGAATAGACTGAAG-AATCCAGATCCTATCTCCCTAAGCAATAGTGGAGCAGATCGAACA
* * * * *
37461107 TTGTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTA
582 TTGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAGTAATCCTATTTCCCTTA
* * *
37461172 GATTATAGTAGAACAGATTAAAATAAAGGATCTTATCTCTCTTAATTTACAG
647 GATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAG
* * * *
37461224 TAGAGTAGATTGCATCAGGTCTAAACTCCCTGAGATT-CTAGTGGAATAGACCGAAGAATTCCAG
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTAC-AGCGGAATAGACTGAAGAAATCCAG
* *
37461288 ATCTTATCTCCCTAAGCAATAGTGGAGCTAATCGAAAACGGTGAATCTTATCT-CCTGAGATTAC
65 ATCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTAC
* * * *
37461352 AGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAGAATAAA
130 AGCAGAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAA
* * *
37461417 GGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCTTGAGATTA-T
195 GGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACT
* * * ** * * * *
37461481 AGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCT
260 -GTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGA-ACAATAGCGGAGCAGATCGAAGAT
* * * * * * *** * * *
37461546 AGT-AATCCTATCTCCCTAAGATTACAGTGGAGCGAATTAAAATAAAGGATAT--TACCTCTCTG
323 GGTGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATT-GAAGCCAGTA-ATCCTATCTCCCTG
* * * * * * * * * *
37461608 A-AGTTACAGTAGAGTAGATCGCA-TCAG-GTCTTATCTCCCTCAGATTACAGTGGA--ATAGAC
386 AGA-TTACAGTAGAGCAAATTGAAGTCAGTATCCTATTTGCCTGAGATTACAGTGGAGCGTA-A-
* ** * * * ** * * * * *
37461668 CGAATAGTTCCA-GATCTTGTCTCCCTGAGCAATAGTGGAGCAGATTGAAGACGGTGAA-TCTTA
448 -GAA-A-ATAAAGGATCTTATCTCTCTAAGTTATAGTAGAGTAGA-T--CG-C-ATCAAGTCTTA
* * * ** * * *
37461731 TCTCCATAAGATTACAGCGGAGCAGATTGAAG---CCAGTAATCCTATCTCCCTGAG-ATTACAG
505 TCTCCCTGAGATTACAGTGGAATAGACTGAAGAATCCAG--ATCCTATCTCCCTAAGCA--ATAG
* ** *** * * * *
37461792 CGGAGCAGATTAAACCCAGT-AAACCTATCTCCCTGAGATTACAGTGGAGAAAATTGAAGCAAGT
566 TGGAGCAGATCGAACATTGTGAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAGT
* * * * * *
37461856 AATCCTATTTCCCTAATATTATAGTGGAGCGGATGAAAATAAAGGATCTTATCTCACTAAAGTTA
631 AATCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTA
37461921 CAG
696 CAG
* * * * * * *
37461924 TAGTGTAGATCGCATCAGGTCTTATCTCCATGCGATTACAGCGGAATACACTGAATAAATCCAGA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
* *
37461989 TCTTATCTCCCTAAGCAATAGTGGAGCTAAT-AAAAATGGTGAATCTGATCTCCCTGAGATTATA
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACA
*
37462053 GCAGAGTAGATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAA
131 GCAGAGCAGATTGAA-GCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAA
*
37462117 GGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTAAGATTACT
195 GGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACT
* * * * * *
37462182 GTGGAATAAACCGAAGAGTTCCAGATCTTGTCTTCCTGAGCAATAGTGGAGCAGATCGACGACGG
260 GTGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGAACAATAGCGGAGCAGATCGAAGATGG
* *
37462247 TGAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATTCTATCTCCCTGAGAT
325 TGAATCTTATCTCCCAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGAT
** * * *
37462312 TACAGCGGAGCAAATTGAAGCCAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAAAT
390 TACAGTAGAGCAAATTGAAGTCAGT-ATCCTATTTGCCTGAGATTACAGTGGAGCGTAAGAAAAT
* * *
37462377 AAAGGATCTTATCCCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATT
454 AAAGGATCTTATCTCTCT-AAGTTATAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGATT
* * *
37462442 ACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCTCTAAGCAATAGTGGAGCTA-ATCGAAA
518 ACAGTGGAATAGACTGAAG-AATCCAGATCCTATCTCCCTAAGCAATAGTGGAGC-AGATCGAAC
* * * * **
37462506 ATTGTGAAT-CT-TCTCTCCTTGAGATTACAGCGAAGCAGATTGAAGCCAGTAGTCCTATTTCTT
581 ATTGTGAATCCTATCTCT-C-TGAGATTACAGCGGAGAAAATTGAAGCCAGTAATCCTATTTCCC
* *
37462569 TTAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAG
644 TTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAG
* * * *
37462624 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGA
1 TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
** *
37462689 TCTTATCTATCTAAGCAATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTACA
66 TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACA
* * * *
37462754 GCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTTAGATTACAGTGGAACAGATTAAAATAAAG
131 GCAGAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAAG
* * * *
37462819 GATCTTATCTCTCTGAAGTAACAGTAGAGTAGATTGCATCAGGTCTTATCTCCCTGAGATTACAG
196 GATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACTG
*
37462884 TGGAATAGACCGAAGAATTTCAGATCTT
261 TGGAATAGACCGAAGAATTCCAGATCTT
37462912 ATGTCCCTGA
Statistics
Matches: 12606, Mismatches: 2377, Indels: 1232
0.78 0.15 0.08
Matches are distributed among these distances:
680 8 0.00
681 51 0.00
682 70 0.01
683 108 0.01
684 289 0.02
685 486 0.04
686 385 0.03
687 299 0.02
688 472 0.04
689 467 0.04
690 425 0.03
691 391 0.03
692 475 0.04
693 349 0.03
694 295 0.02
695 212 0.02
696 53 0.00
697 154 0.01
698 269 0.02
699 1161 0.09
700 1415 0.11
701 3999 0.32
702 387 0.03
703 252 0.02
704 121 0.01
705 7 0.00
706 6 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (698 bp):
TAGAGTAGATCGCATCAGGTCTAAACTCCCTGAGATTACAGCGGAATAGACTGAAGAAATCCAGA
TCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACA
GCAGAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAAG
GATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACTG
TGGAATAGACCGAAGAATTCCAGATCTTGTCTTCCTGAACAATAGCGGAGCAGATCGAAGATGGT
GAATCTTATCTCCCAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATT
ACAGTAGAGCAAATTGAAGTCAGTATCCTATTTGCCTGAGATTACAGTGGAGCGTAAGAAAATAA
AGGATCTTATCTCTCTAAGTTATAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGATTACA
GTGGAATAGACTGAAGAATCCAGATCCTATCTCCCTAAGCAATAGTGGAGCAGATCGAACATTGT
GAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCCAGTAATCCTATTTCCCTTAGATT
ATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAG
Found at i:37454122 original size:526 final size:524
Alignment explanation
Indices: 37453099--37454078 Score: 1226
Period size: 526 Copynumber: 1.9 Consensus size: 524
37453089 AGAATTTCAG
* * *
37453099 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
1 ATCTGATCTCCCTGAGATTACAACAGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
* * *
37453164 AGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGACCGAATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGG
* * *
37453229 TCTTATCTCTCTGAGATTACAGTGGAATAGACCGAATAGTTCCAGATCTTGTCTCCCTGAGCAAT
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTGTCTCCCTGAACAAT
* * *
37453294 AGTGGAGCAGATCAAAGACAGTGAATCTTTTCTCCATAAGATTACAGCGGAGCAGATTGAAGCCA
196 AGTGGAGCAGATCAAAGACAGTGAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCA
* * *
37453359 GTTATCCTATCTCCCTGGGATTACAGCGGAGCAGATTGAACCGAGTAATCCTATCTCTCAGAGAT
261 GTAATCCTATCTCCCTGAGATTACAGCGGAGCAAATTGAACCGAGTAATCCTATCTCTCAGAGAT
*** * * * * *
37453424 TACAGCAGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGATATTATAGTGGAGCAGATGAAAAT
326 TACAGCAGAGAAAAGAAAAGAAAGTAATCCTATCTCCCTAATATTACAGTAGAGCAGATG-AAAT
* * * * * *
37453489 AAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGTTCTTATCTCCATGAGATT
390 AAAGGATCTTATCTCCCTAAAGTTACAGTAGAATAGATAGAATCAGATCTTATCTCCATAAGA-T
*
37453554 ACAGCGGAATAAACTGAATAAATCCAAATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAA
454 ACAGCGGAACAAACTGAATAAATCCAAATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAA
37453619 TGGTGA
519 TGGTGA
* *
37453625 ATCTGATCTCCCTGAGATTATAACAGAGCAT-ATT-AATGCTAGTAATCCTAT-TACCCTGAGAT
1 ATCTGATCTCCCTGAGATTACAACAGAGC-TGATTGAA-GCTAGTAATCCTATCT-CCCTAAGAT
37453687 TACAGTGGAACCG-ATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCAT
63 TACAGTGG-ACCGAATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCAT
* * * *
37453751 CAGGTCTTATTTCCCTGAGATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAA
127 CAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTGTCTCCCTGAA
* **
37453816 CAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAA
192 CAATAGTGGAGCAGATCAAAGACAGTGAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAA
* *
37453881 GCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGCC-AGTAATCCTATTTGC-C
257 GCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAAATTGAA-CCGAGTAATCCTATCT-CTC
* ** ** * * * * * *
37453944 TGAGATTACAGTGGAGCGTAAGAAAATAAAG-GATCTTATCTCTCTAATGTTACAGTAGAGTAGA
320 AGAGATTACAGCAGAG-AAAAGAAAAGAAAGTAATCCTATCTCCCTAATATTACAGTAGAGCAGA
* * * *
37454008 TCG-CATCAA-G-TCTTATCTCCCTGATA-TTACAGTGGAATAGACTGAAGAAATCCAGATCTTA
384 T-GAAATAAAGGATCTTATCTCCCT-AAAGTTACAGTAGAATAGA-T--AG-AAT-CAGATCTTA
*
37454069 TCTCCCTAAG
442 TCTCCATAAG
37454079 CAATAGTGGA
Statistics
Matches: 384, Mismatches: 56, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
523 24 0.06
524 4 0.01
525 7 0.02
526 316 0.82
527 17 0.04
528 16 0.04
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (524 bp):
ATCTGATCTCCCTGAGATTACAACAGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
AGTGGACCGAATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTGTCTCCCTGAACAAT
AGTGGAGCAGATCAAAGACAGTGAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCA
GTAATCCTATCTCCCTGAGATTACAGCGGAGCAAATTGAACCGAGTAATCCTATCTCTCAGAGAT
TACAGCAGAGAAAAGAAAAGAAAGTAATCCTATCTCCCTAATATTACAGTAGAGCAGATGAAATA
AAGGATCTTATCTCCCTAAAGTTACAGTAGAATAGATAGAATCAGATCTTATCTCCATAAGATAC
AGCGGAACAAACTGAATAAATCCAAATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATG
GTGA
Found at i:37454480 original size:85 final size:85
Alignment explanation
Indices: 37454378--37454657 Score: 269
Period size: 85 Copynumber: 3.2 Consensus size: 85
37454368 CAATCCTATT
37454378 TCCCTGAGATTACAGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGT
1 TCCCTGAGATTACAGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGT
37454443 AGATCGCATCAGGTCTTATC
66 AGATCGCATCAGGTCTTATC
* ** ** ** * * **
37454463 TCCCTGAGATTATAGTGGAATAGACCAGAGAATTTCA-GATCTTATCTC-CCTGAGATTACAGCG
1 TCCCTGAGATTACAGTGGAACGGA--TTAGAA-TAAAGGATCTTATCTCTCTTAAG-TTACAGTA
* * * * *
37454526 GAGCT-GATTGAAGCTAGTAATCCTATC
62 GAG-TAGATCGCATC-AG--GTCTTATC
* * * * *
37454553 TCCCTAAGATTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
1 TCCCTGAGATTACAGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGT
37454618 AGATCGCATCAGGTCTTATC
66 AGATCGCATCAGGTCTTATC
*
37454638 TCTCTGAGATTACAGTGGAA
1 TCCCTGAGATTACAGTGGAA
37454658 TAGACCGAAT
Statistics
Matches: 144, Mismatches: 40, Indels: 22
0.70 0.19 0.11
Matches are distributed among these distances:
85 44 0.31
86 4 0.03
87 35 0.24
88 34 0.24
89 3 0.02
90 24 0.17
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (85 bp):
TCCCTGAGATTACAGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGT
AGATCGCATCAGGTCTTATC
Found at i:37454555 original size:219 final size:220
Alignment explanation
Indices: 37453844--37454573 Score: 898
Period size: 219 Copynumber: 3.3 Consensus size: 220
37453834 AAGATGGTGA
** * *** *
37453844 ATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGT-AATCCTATCTCCCTGAGATTA
1 ATCTTATCTCCCTAAGATTACAGCGGAGCAAATCGAAAATAGTGAATCCTATCTCCCTAAGATTA
* * * * * **
37453908 CAGCGGAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGTAAGAAAATAA
66 CAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAAAATAA
* *
37453973 AGGATCTTATCTCTC-TAATGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGATATTA
131 AGGATCTTATCTCTCTTAA-GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTA
* * *
37454037 CAGTGGAATAGACTGAAGAAATCCAG
195 TAGTGGAATAGACCGAAGAATTCCAG
* * * * *
37454063 ATCTTATCTCCCTAAGCA--ATAGTGGAGCAAATCGAAAATTGTGAATCTTCTCTCCCTAAGATT
1 ATCTTATCTCCCTAAG-ATTACAGCGGAGCAAATCGAAAATAGTGAATCCTATCTCCCTAAGATT
* * * *
37454126 ACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCTCTTAGATTATAGTGGAACAGATTAAAATA
65 ACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAAAATA
* * * * * * *
37454191 AAGGATCTTATCTCTCTGAATTTATAGTAGAGTAGATTGCATCAGGTCTAAACTCCCTGAGATTC
130 AAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTA
37454256 TAGTGGAATAGACCGAAGAATTCCAG
195 TAGTGGAATAGACCGAAGAATTCCAG
* * * * * * *
37454282 ATCTTATCTCCCTAAG-TAATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTA
1 ATCTTATCTCCCTAAGATTACAGCGGAGCAAATCGAAAATAGTGAATCCTATCTCCCTAAGATTA
* ** *
37454346 CAGCAGAGCAGATTGAAGCCAACAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAGAATAA
66 CAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAAAATAA
37454411 AGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTAT
131 AGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTAT
*
37454476 AGTGGAATAGACC-AGAGAATTTCAG
196 AGTGGAATAGACCGA-AGAATTCCAG
* ** * **
37454501 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGT-AATCCTATCTCCCTAAGATTA
1 ATCTTATCTCCCTAAGATTACAGCGGAGCAAATCGAAAATAGTGAATCCTATCTCCCTAAGATTA
*
37454565 CAGTGGAGC
66 CAGCGGAGC
37454574 GAATTAAAAT
Statistics
Matches: 436, Mismatches: 68, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
218 18 0.04
219 397 0.91
220 21 0.05
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (220 bp):
ATCTTATCTCCCTAAGATTACAGCGGAGCAAATCGAAAATAGTGAATCCTATCTCCCTAAGATTA
CAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAAAATAA
AGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTAT
AGTGGAATAGACCGAAGAATTCCAG
Found at i:37454617 original size:175 final size:175
Alignment explanation
Indices: 37454326--37454663 Score: 559
Period size: 175 Copynumber: 1.9 Consensus size: 175
37454316 AAAATGGTGA
* *
37454326 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAACAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAACAATCCTATCTCCCTAAGATTAC
* * *
37454391 AGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
*
37454456 TCTTATCTCCCTGAGATTATAGTGGAATAGACCAGAGAATTTCAG
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAGAGAATTTCAG
* * * **
37454501 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAACAATCCTATCTCCCTAAGATTAC
*
37454566 AGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
*
37454631 TCTTATCTCTCTGAGATTACAGTGGAATAGACC
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACC
37454664 GAATAGTTCC
Statistics
Matches: 150, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
175 150 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (175 bp):
ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAACAATCCTATCTCCCTAAGATTAC
AGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCAGAGAATTTCAG
Found at i:37454738 original size:175 final size:174
Alignment explanation
Indices: 37454326--37454748 Score: 494
Period size: 175 Copynumber: 2.4 Consensus size: 174
37454316 AAAATGGTGA
* * ** * ** * * *
37454326 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAACAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTAAGA-TACAGCGGAGCAGATCAAAGCTAGTAATCCTATCTCCATAAGATTAC
* * * *
37454391 AGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGG
65 AGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* *
37454456 TCTTATCTCCCTGAGATTATAGTGGAATAGACCAGAGAATTTCAG
130 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAGAGAATTCCAG
* * ** *
37454501 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTAAGA-TACAGCGGAGCAGATCAAAGCTAGTAATCCTATCTCCATAAGATTAC
37454566 AGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
65 AGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
*
37454631 TCTTATCTCTCTGAGATTACAGTGGAATAGACC-GA-ATAGTTCCAG
130 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAGAGA-A-TTCCAG
* * * * * *
37454676 ATTTTGTCTCCCTAAGCA-ATAGTGGAGCAGATCAAAGAC-AGTGAATCTTTTCTCCATAAGATT
1 ATCTTATCTCCCTAAG-ATACAGCGGAGCAGATCAAAG-CTAGT-AATCCTATCTCCATAAGATT
*
37454739 ACAGCGGAGC
63 ACAGTGGAGC
37454749 AGATTGAAGC
Statistics
Matches: 217, Mismatches: 26, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
173 1 0.00
174 20 0.09
175 195 0.90
176 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (174 bp):
ATCTTATCTCCCTAAGATACAGCGGAGCAGATCAAAGCTAGTAATCCTATCTCCATAAGATTACA
GTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
CTTATCTCCCTGAGATTACAGTGGAATAGACCAGAGAATTCCAG
Found at i:37454810 original size:263 final size:263
Alignment explanation
Indices: 37454505--37455572 Score: 943
Period size: 263 Copynumber: 4.1 Consensus size: 263
37454495 TTTCAGATCT
* * * *
37454505 TATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTACAGTG
1 TATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
*
37454570 GAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
66 GAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGAATCAGGTCTT
* * * *
37454635 ATCTCTCTGAGATTACAGTGGAATAGACCGAATAGTTCCAGATTTTGTCTCCCTAAGCAATAGTG
131 ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTAAGCAATAGTG
* * *
37454700 GAGCAGATCAAAGACAGTGAATCTTTTCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
196 GAGCAAATCAAAGATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
37454765 TCC
261 TCC
* * * * **
37454768 TATCTCCCTGGGATTACAGCGGAGCAGATTGAACCCAGTAATCCTATCTCTCTGAGATTACAGCA
1 TATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
** * ** * * * * * * * *
37454833 GAGAAAATT-GAAGCAAGTAATCCTATTTCCCTGATA-TTATAGTGGAGCAGAT-GAAAATAAAG
66 GAGCGAATTAAAATAAAG-GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG--AAT-CAG
* * * * * * * * * *
37454895 GATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCG--CA--T-CAGGTCCTATCTCCATGAG-
126 G-TCTTATCTCCCTGAGA-TTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTAAGC
* * ** ** * * * * * *
37454953 ATTACAGCGGAATAAATTGAATA-AATCCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-A
189 A--ATAGTGGAGCAAATCAAAGATAGT-GA-ATCTTATCTCCATAAG-ATTACAGCGGAGC-AGA
** ****
37455014 TAAAAAATGGTGAAT-C
248 TTGAAGCCAGT-AATCC
* * * *
37455030 TGATCTCCCTGAGATTATAACAGAGCATATT-AATGCTAGTAATCCTAT-TACCCTGAGATTACA
1 T-ATCTCCCTGAGATTACAGCAGAGCAGATTGAA-GCCAGTAATCCTATCT-CCCTGAGATTACA
* * * *
37455093 GTGGAACGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
63 GTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGAATCAGGT
* ** * * *
37455158 CTTATTTCCCTGAGATTACTTTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAA-CAAT
128 CTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCT-AAGCAAT
* * * * *
37455222 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCA
192 AGTGGAGCAAATCAAAGATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCA
37455287 GTAATCC
257 GTAATCC
* * * * *
37455294 TATCTCCTTGAGATTACAGCAGAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTACAGTG
1 TATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
* *
37455359 GAGCGCATGAAAATAAAGGATCTTATCTCTCT-AATGTTACAGTAGAGTAGATCGAATCAGGTCT
66 GAGCGAATTAAAATAAAGGATCTTATCTCTCTGAA-GTTACAGTAGAGTAGATCGAATCAGGTCT
* * **
37455423 TATCTCCCTGATATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGT
130 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTAAGCAATAGT
* * * * * *
37455488 GGAGCAAATCGAAA-ATTGTGAATCTTCTCTCCCTGAGATTACAGCGAAGCAGATTGAATCCAGT
195 GGAGCAAATC-AAAGATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
37455552 AATCC
259 AATCC
* *
37455557 TATTTCCCTTAGATTA
1 TATCTCCCTGAGATTA
37455573 TAGTGGAACA
Statistics
Matches: 617, Mismatches: 150, Indels: 76
0.73 0.18 0.09
Matches are distributed among these distances:
260 23 0.04
261 20 0.03
262 48 0.08
263 433 0.70
264 47 0.08
265 17 0.03
266 29 0.05
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (263 bp):
TATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
GAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGAATCAGGTCTT
ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTAAGCAATAGTG
GAGCAAATCAAAGATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
TCC
Found at i:37455073 original size:307 final size:307
Alignment explanation
Indices: 37453858--37455093 Score: 792
Period size: 307 Copynumber: 4.0 Consensus size: 307
37453848 TATCTCCAAA
* * * * *
37453858 AGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAAATTT
1 AGATTACAGCGGAGCAGATTGAACCCAGTAATCCTATCTCCCTGAGATTACAGCAGAGAAAATTG
* * * *
37453923 AAGCCAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGTAA-GAAAATAAAGGATCTTATCTCT
66 AAGCAAGTAATCCTATCTCCCTAAGATTACAGTGGAGCG-AATGAAAATAAAGGATCTTATCTCT
* * * * * * * *
37453987 CTAATGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGATATTACAGTGGAATAGACTG
130 CTAAAGTTACAGTAGAGTAGATCGCATCAGGTCCTATCTCTCTGAGATTACAGCGGAATAAACCG
* * ** ** **
37454052 AAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAAATTGTGAATCTTCTCTC
195 AATAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATAAAAAACAGTGAATCTGATCTC
* * * * * *
37454117 CCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCTCTT
260 CATAAGATTACAACAGAGCAGATTGAAGCCAGTAATCCTATTACCCTG
* * * * *** * * * * * * *
37454165 AGATTATAGTGGAACAGATTAAAATAAAG-GATCTTATCTCTCTGA-ATTTATAGTAGAGTAGAT
1 AGATTACAGCGGAGCAGATT-GAACCCAGTAATCCTATCTCCCTGAGA-TTACAGCAGAGAAAAT
* * * * * ** ** **
37454228 TGCATC-AG--GT-CTAAACTCCCTGAGATT-CTAGTGGAATAGACCGAAGAATTCCA-GATCTT
64 TGAAGCAAGTAATCCT-ATCTCCCTAAGATTAC-AGTGG-AGCGAATGAA-AA-TAAAGGATCTT
* * * * * * * *
37454287 ATCTCCCT-AAGTAATAGTGGAGCTA-ATCGAAAAT-GGTGAATCTTATCTCCCTGAGATTACAG
124 ATCTCTCTAAAGTTACAGTAGAG-TAGATCG--CATCAG-G--TCCTATCTCTCTGAGATTACAG
* ** * ** ** * * * * * * *
37454349 CAGAGCAGATTGAAGCCAA--CA-ATCCTATTTCCCTGAG-ATTACAGTGGAACGGATTAGAATA
183 CGGAATAAACCGAA-TAAATCCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCAGA-TA-AAAA
* * ** * * * * * *
37454410 A-AG-G-ATCTTATCTCTCTTAAG-TTACAGTAGAGTAGATCGCA-TCAG--GTCTTATCT-CCC
243 ACAGTGAATCTGATCTC-CATAAGATTACAACAGAGCAGATTGAAGCCAGTAATCCTAT-TACCC
37454467 TG
306 TG
* * ** * * *
37454469 AGATTATAGTGGAATAGACCAGA--GAATTTCAG--ATCTTATCTCCCTGAGATTACAGCGGAGC
1 AGATTACAGCGG---AG--CAGATTGAA-CCCAGTAATCCTATCTCCCTGAGATTACAGCAGAGA
** * *
37454530 TGATTGAAGCTAGTAATCCTATCTCCCTAAGATTACAGTGGAGCGAATTAAAATAAAGGATCTTA
60 AAATTGAAGCAAGTAATCCTATCTCCCTAAGATTACAGTGGAGCGAATGAAAATAAAGGATCTTA
* * *
37454595 TCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCTCTGAGATTACAGTGGAATA
125 TCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCCTATCTCTCTGAGATTACAGCGGAATA
* ** * * * * *
37454660 GACCGAATAGTTCCAGATTTTGTCTCCCTAAGCAATAGTGGAGCAGATCAAAGACAGTGAATCTT
190 AACCGAATAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATAAAAAACAGTGAATCTG
* * *
37454725 TTCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCT-CCCTG
255 ATCTCCATAAGATTACAACAGAGCAGATTGAAGCCAGTAATCCTAT-TACCCTG
* *
37454778 GGATTACAGCGGAGCAGATTGAACCCAGTAATCCTATCTCTCTGAGATTACAGCAGAGAAAATTG
1 AGATTACAGCGGAGCAGATTGAACCCAGTAATCCTATCTCCCTGAGATTACAGCAGAGAAAATTG
* * * *
37454843 AAGCAAGTAATCCTATTTCCCTGATATTATAGTGGAGC-AGATGAAAATAAAGGATCTTATCTCT
66 AAGCAAGTAATCCTATCTCCCTAAGATTACAGTGGAGCGA-ATGAAAATAAAGGATCTTATCTCT
**
37454907 CTAAAGTTACAGTAGAGTAGATCGCATCAGGTCCTATCTC-CATGAGATTACAGCGGAATAAATT
130 CTAAAGTTACAGTAGAGTAGATCGCATCAGGTCCTATCTCTC-TGAGATTACAGCGGAATAAACC
**
37454971 GAATAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTA-ATAAAAAATGGTGAATCTGATC
194 GAATAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGC-AGATAAAAAACAGTGAATCTGATC
* * * * *
37455035 TCCCTGAGATTATAACAGAGCATATT-AATGCTAGTAATCCTATTACCCTG
258 TCCATAAGATTACAACAGAGCAGATTGAA-GCCAGTAATCCTATTACCCTG
37455085 AGATTACAG
1 AGATTACAG
37455094 TGGAACGGAT
Statistics
Matches: 704, Mismatches: 168, Indels: 114
0.71 0.17 0.12
Matches are distributed among these distances:
303 6 0.01
304 74 0.11
305 41 0.06
306 105 0.15
307 353 0.50
308 42 0.06
309 75 0.11
310 8 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (307 bp):
AGATTACAGCGGAGCAGATTGAACCCAGTAATCCTATCTCCCTGAGATTACAGCAGAGAAAATTG
AAGCAAGTAATCCTATCTCCCTAAGATTACAGTGGAGCGAATGAAAATAAAGGATCTTATCTCTC
TAAAGTTACAGTAGAGTAGATCGCATCAGGTCCTATCTCTCTGAGATTACAGCGGAATAAACCGA
ATAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATAAAAAACAGTGAATCTGATCTCC
ATAAGATTACAACAGAGCAGATTGAAGCCAGTAATCCTATTACCCTG
Found at i:37455203 original size:219 final size:219
Alignment explanation
Indices: 37454813--37455312 Score: 567
Period size: 219 Copynumber: 2.3 Consensus size: 219
37454803 CAGTAATCCT
* * * * *
37454813 ATCTCTCTGAGATTACAGCAGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGATATTATAGTGG
1 ATCTCCCTGAGATTACAACAGAGAAAATTGAAGCAAGTAATCCTATTACCCTGAGATTACAGTGG
* *
37454878 AGCAGATGAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCCTA
66 AACAGATGAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCCTA
** *
37454943 TCTCCATGAGATTACAGCGGAATAAATTGAATAAATCCAGATCTTATCTCCCT-AAGCAATAGTG
131 TCTCCATGAGATTACAGCGGAATAAACCGAAGAAATCCAGATCTTATCTCCCTGAA-CAATAGTG
37455007 GAGCTA-ATAAAAAATGGTGAATCTG
195 GAGC-AGATAAAAAATGGTGAATCTG
* * * *
37455032 ATCTCCCTGAGATTATAACAGAGCATATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTG
1 ATCTCCCTGAGATTACAACAGAGAAAATTGAA-GCAAGTAATCCTATTACCCTGAGATTACAGTG
* * * *
37455096 GAACGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
65 GAACAGATGAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCCT
* * *** ** ** * *
37455161 ATTTCCCTGAGATTACTTTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATAGTG
130 ATCTCCATGAGATTACAGCGGAATAAACCGAAGAAATCCAGATCTTATCTCCCTGAACAATAGTG
** * *
37455226 GAGCAGATCGAAGATGGTGAATCTT
195 GAGCAGATAAAAAATGGTGAATCTG
*** * * * * *
37455251 ATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCT-CCTTGAGATTACAG
1 ATCTCCCTGAGATTACAACAGAGAAAATTGAAGCAAGTAATCCTAT-TACCCTGAGATTACAG
37455313 CAGAGCAAAT
Statistics
Matches: 234, Mismatches: 42, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
218 3 0.01
219 226 0.97
220 5 0.02
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (219 bp):
ATCTCCCTGAGATTACAACAGAGAAAATTGAAGCAAGTAATCCTATTACCCTGAGATTACAGTGG
AACAGATGAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCCTA
TCTCCATGAGATTACAGCGGAATAAACCGAAGAAATCCAGATCTTATCTCCCTGAACAATAGTGG
AGCAGATAAAAAATGGTGAATCTG
Found at i:37455256 original size:482 final size:481
Alignment explanation
Indices: 37454763--37455794 Score: 1471
Period size: 482 Copynumber: 2.1 Consensus size: 481
37454753 TGAAGCCAGT
* * *
37454763 AATCCTATCTCCCTGGGATTACAGCGGAGCAGATTGAACCCAGTAATCCTATCTCTCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTC-CTGAGATTA
* *
37454828 CAGCAGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGATATTATAGTGGAGCAG-ATGAAAATA
65 CAGCAGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGAGATTACAGTGGAGC-GCATGAAAATA
*
37454892 AAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCCTATCTCCATGAGATTA
129 AAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGAATCAGGTCCTATCTCCATGAGATTA
* * *
37454957 CAGCGGAATAAATTGAATAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAAT
194 CAGCGGAATAAACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAAT
* * *
37455022 GGTGAATCTGATCTCCCTGAGATTATAAC-AGAGCATATT-AATGCTAGTAATCCTATTACCCTG
259 GGTGAATCTGATCTCCCTGAGATTACAACGA-AGCAGATTGAAT-CCAGTAATCCTATTACCCTG
* * *
37455085 AGATTACAGTGGAACGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCG
322 AGATTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTAAAATTACAGTAGAGTAGATCG
* ** ** * * * *
37455150 CATCAGGTCTTATTTCCCTGAGATTACTTTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCT
387 CATCAGGTCTAAACTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT
*
37455215 GAA-CAATAGTGGAGC-AGATCGAAGATGGTG
452 -AAGCAATAGTGGAGCTA-ATCGAAAATGGTG
*** *
37455245 AATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCTTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCC-TGAGATTA
* * * *
37455310 CAGCAGAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGCATGAAAATAA
65 CAGCAGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGAGATTACAGTGGAGCGCATGAAAATAA
* * * *
37455375 AGGATCTTATCTCTCTAATGTTACAGTAGAGTAGATCGAATCAGGTCTTATCTCCCTGATATTAC
130 AGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGAATCAGGTCCTATCTCCATGAGATTAC
* * ** *
37455440 AGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAAATT
195 AGCGGAATAAACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATG
** * * *
37455505 GTGAATCTTCTCTCCCTGAGATTACAGCGAAGCAGATTGAATCCAGTAATCCTATTTCCCTTAGA
260 GTGAATCTGATCTCCCTGAGATTACAACGAAGCAGATTGAATCCAGTAATCCTATTACCCTGAGA
* * *
37455570 TTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAATTACAGTAGAGTAGATTGCAT
325 TTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTAAAATTACAGTAGAGTAGATCGCAT
*
37455635 CAGGTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAG
390 CAGGTCTAAACTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAG
37455700 CAATAGTGGAGCTAATCGAAAATGGTG
455 CAATAGTGGAGCTAATCGAAAATGGTG
* * *
37455727 AATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCT-CCTGAGATTA
37455792 CAG
65 CAG
37455795 TGGAACGGAT
Statistics
Matches: 485, Mismatches: 58, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
481 4 0.01
482 474 0.98
483 7 0.01
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (481 bp):
AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCTGAGATTAC
AGCAGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGAGATTACAGTGGAGCGCATGAAAATAAA
GGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGAATCAGGTCCTATCTCCATGAGATTACA
GCGGAATAAACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGG
TGAATCTGATCTCCCTGAGATTACAACGAAGCAGATTGAATCCAGTAATCCTATTACCCTGAGAT
TACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTAAAATTACAGTAGAGTAGATCGCATC
AGGTCTAAACTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGC
AATAGTGGAGCTAATCGAAAATGGTG
Found at i:37455625 original size:219 final size:218
Alignment explanation
Indices: 37455289--37455915 Score: 950
Period size: 219 Copynumber: 2.9 Consensus size: 218
37455279 TGAAGCCAGT
* * * * *
37455289 AATCCTATCTCCTTGAGATTACAGCAGAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * * *
37455354 CAGTGGAGCGCATGAAAATAAAGGATCTTATCTCTCTAATGTTACAGTAGAGTAGATCGAATCAG
66 CAGTGGAACG-ATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
* * *
37455419 GTCTTATCTCCCTGATATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAA
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAA
*
37455484 TAGTGGAGCAAATCGAAAATTGTG
195 TAGTGGAGCAAATCGAAAATGGTG
* * *
37455508 AATCTTCTCTCCCTGAGATTACAGC-GAAGCAGATTGAATCCAGTAATCCTATTTCCCTTAGATT
1 AATCTTATCTCCCTGAGATTACAGCAG-AGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATT
* * *
37455572 ATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAATTACAGTAGAGTAGATTGCATCA
65 ACAGTGGAAC-GATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCA
* * *
37455637 GGTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCA
129 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCA
*
37455702 ATAGTGGAGCTAATCGAAAATGGTG
194 ATAGTGGAGCAAATCGAAAATGGTG
*
37455727 AATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* *
37455792 CAGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAAC-GATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
* **
37455857 GTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAATTTTAGATCTTATCTCCCT
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT
37455916 GAGATTACAG
Statistics
Matches: 366, Mismatches: 39, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
218 1 0.00
219 363 0.99
220 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (218 bp):
AATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
CAGTGGAACGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAAT
AGTGGAGCAAATCGAAAATGGTG
Found at i:37456092 original size:174 final size:175
Alignment explanation
Indices: 37455728--37456092 Score: 552
Period size: 175 Copynumber: 2.1 Consensus size: 175
37455718 AAAATGGTGA
* * *
37455728 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAA
* * *
37455793 AGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* **
37455858 TCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAATTTTAG
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * * *
37455903 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAATATTAA
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAA
*
37455968 AGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACA-TAGAGTAGATCGCATCAGG
66 AGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* * *
37456032 TCTTATCTCTCTGAGATTACAGTGGAATAGACCGAATAGTTCCAG
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
*
37456077 ATCTTGTCTCCCTGAG
1 ATCTTATCTCCCTGAG
37456093 CAATAGTGGA
Statistics
Matches: 171, Mismatches: 19, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
174 73 0.43
175 98 0.57
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (175 bp):
ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAA
AGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
Found at i:37456705 original size:219 final size:217
Alignment explanation
Indices: 37456223--37456712 Score: 574
Period size: 219 Copynumber: 2.2 Consensus size: 217
37456213 TATCTCTCTG
* * * * * *
37456223 AGATTACAGCGGAGAAAATTGAAGTAAGTAATCATATTTCCCTGATATTATAGTGGAGCAGATGA
1 AGATTACAGCGGAGCAAATTGAAGCAAGTAATCCTA-TTCCCTGAGATTACAGTGGAACAGATGA
*
37456288 AAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTACTCCATGAG
65 AAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTACTCCATGAG
* *
37456353 ATTACAGCGGAATAAACTGAATAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAA
130 ATTACAGCGGAATAAACCGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAA
***
37456418 AAATGGTGAATCTGTTCTCCCTG
195 AAATGGTGAATCTGTTCTCCAAA
* * * * * * *
37456441 AGATTATAACAGAGCATATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATT
1 AGATTACAGCGGAGCAAATTGAA-GCAAGTAATCCTATT-CCCTGAGATTACAGTGGAACAGATG
* * *
37456505 AAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATTTCCCTG
64 AAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA-CTCCATG
* * ** ** * *
37456570 AGATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAA-CAATAGTGGAGC-AGA
128 AGATTACAGCGGAATAAACCGAAGAAATCCAGATCTTATCTCCCT-AAGCAATAGTGGAGCTA-A
** *
37456633 TCGAAGATGGTGAATCT-TATCTCCAAA
191 TAAAAAATGGTGAATCTGT-TCTCCAAA
*
37456660 AGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAG
1 AGATTACAGCGGAGCAAATTGAAGCAAGTAATCCTAT-TCCCTGAGATTACAG
37456713 CGGAGCAAAT
Statistics
Matches: 226, Mismatches: 38, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
217 4 0.02
218 102 0.45
219 115 0.51
220 5 0.02
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.28
Consensus pattern (217 bp):
AGATTACAGCGGAGCAAATTGAAGCAAGTAATCCTATTCCCTGAGATTACAGTGGAACAGATGAA
AATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTACTCCATGAGA
TTACAGCGGAATAAACCGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAA
AATGGTGAATCTGTTCTCCAAA
Found at i:37456866 original size:263 final size:263
Alignment explanation
Indices: 37455907--37456986 Score: 962
Period size: 263 Copynumber: 4.1 Consensus size: 263
37455897 TTTTAGATCT
* * * *
37455907 TATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAATATTAAAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTG
*
37455972 GAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACA-TAGAGTAGATCGCATCAGGTCTT
66 GAGCGAATGAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * * *
37456036 ATCTCTCTGAGATTACAGTGGAATAGACCGAATAGTTCCAGATCTTGTCTCCCTGAGCAATAGTG
131 ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGATCCAGATCTTGTCTCCCTGAACAATAGTG
* * * *
37456101 GAGCAGATCGAAGACAGTGAAACTTTTCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
196 GAGCAGATCGAAGATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAAATTGAAGCCAGTAA
37456166 TCC
261 TCC
* * * * *
37456169 TATCTCCCTGGGATTACAGCGGAGCAGATTGAACCCAGTAATCCTATCTCTCTGAGATTACAGCG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTG
** * * * * * * * * * *
37456234 GAGAAAATTG-AAGT-AAGTAATCATATTTCCCTGATA-TTATAGTGGAGCAGAT-GAAAATAAA
66 GAGCGAA-TGAAAATAAAG-GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG--CAT-CA
* * * * * * * * *
37456295 GGATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATC---G-CAT-CAGGTCTT-ACTCCATGAG
125 GG-TCTTATCTCCCTGAGA-TTACAGTGGAATAGACCGAAGAGATCCAGATCTTGTCTCCCTGA-
** * * ** * * * * * * * *
37456353 ATTACAGCGGAATA-AACTGAATA-AATCCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTAA
187 ACAATAGTGGAGCAGATC-GAAGATAGT-GA-ATCTTATCTCCATAAG-ATTACAGCGGAGCAAA
** ****
37456414 TAAAAAATGGTGAAT-C
248 TTGAAGCCAGT-AATCC
* * * * *
37456430 TGTTCTCCCTGAGATTATAACAGAGCATATT-AATGCTAGTAATCCTAT-TACCCTGAGATTACA
1 T-ATCTCCCTGAGATTACAGCGGAGCAGATTGAA-GCTAGTAATCCTATCT-CCCTGAGATTACA
* * * *
37456493 GTGGAACGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
63 GTGGAGCGAATGAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
* * * * *
37456558 CTTATTTCCCTGAGATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATA
128 CTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGATCCAGATCTTGTCTCCCTGAACAATA
* *
37456623 GTGGAGCAGATCGAAGATGGTGAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAG
193 GTGGAGCAGATCGAAGATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAAATTGAAGCCAG
37456688 TAATCC
258 TAATCC
* * * *
37456694 TATCTCCCTGAGATTACAGCGGAGCAAATTTAAGCCT-GTAATCCTATTTGCCTGAGATTACAGT
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAG-CTAGTAATCCTATCTCCCTGAGATTACAGT
*
37456758 GGAGCGGATGAAAATAAAGGATCTTATCTCTCT-AATGTTACAGTAGAGTAGATCGCATCAGGTC
65 GGAGCGAATGAAAATAAAGGATCTTATCTCTCTGAA-GTTACAGTAGAGTAGATCGCATCAGGTC
* * * *
37456822 TTATCTCCCTGATATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCT-AAGCAATA
129 TTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGATCCAGATCTTGTCTCCCTGAA-CAATA
* * * * * * *
37456886 GTGGAGCAAATCGAAAATTGTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAG
193 GTGGAGCAGATCGAAGATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAAATTGAAGCCAG
37456951 TAATCC
258 TAATCC
* * * * *
37456957 TATTTCCCTTAGATTATAGTGGAACAGATT
1 TATCTCCCTGAGATTACAGCGGAGCAGATT
37456987 AAAATAAAGG
Statistics
Matches: 629, Mismatches: 150, Indels: 77
0.73 0.18 0.09
Matches are distributed among these distances:
259 22 0.03
260 16 0.03
261 45 0.07
262 183 0.29
263 279 0.44
264 44 0.07
265 14 0.02
266 26 0.04
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (263 bp):
TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTG
GAGCGAATGAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGATCCAGATCTTGTCTCCCTGAACAATAGTG
GAGCAGATCGAAGATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAAATTGAAGCCAGTAA
TCC
Found at i:37457025 original size:219 final size:218
Alignment explanation
Indices: 37456689--37457315 Score: 993
Period size: 219 Copynumber: 2.9 Consensus size: 218
37456679 TGAAGCCAGT
* * * * *
37456689 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGCCTGTAATCCTATTTGCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * *
37456754 CAGTGGAGCGGATGAAAATAAAGGATCTTATCTCTCTAATGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAA-GTTACAGTAGAGTAGATCGCATCAG
* * *
37456819 GTCTTATCTCCCTGATATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAA
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAA
*
37456884 TAGTGGAGCAAATCGAAAATTGTG
195 TAGTGGAGCAAATCGAAAATGGTG
* *
37456908 AATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * *
37456973 TAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATTGCATCAG
66 CAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCT-AAGTTACAGTAGAGTAGATCGCATCAG
* * *
37457038 GTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAA
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAA
*
37457103 TAGTGGAGCTAATCGAAAATGGTG
195 TAGTGGAGCAAATCGAAAATGGTG
* *
37457127 AATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
*
37457192 CAGTGGAACAGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAACAGATTAAAATAAAGGATCTTATCTCTC-TAAGTTACAGTAGAGTAGATCGCATCAG
* *
37457257 GTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCT
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT
37457316 GAGATTACAG
Statistics
Matches: 372, Mismatches: 34, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
219 369 0.99
220 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (218 bp):
AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
CAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAAT
AGTGGAGCAAATCGAAAATGGTG
Found at i:37457076 original size:482 final size:481
Alignment explanation
Indices: 37456180--37457194 Score: 1498
Period size: 482 Copynumber: 2.1 Consensus size: 481
37456170 ATCTCCCTGG
* *
37456180 GATTACAGCGGAGCAGATTGAACCCAGTAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGA
1 GATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGAAAATTGA
* * *
37456245 AGTAAGTAATCATATTTCCCTGATATTATAGTGGAGCAGATGAAAATAAAGGATCTTATCTCTCT
66 AGCAAGTAATCATATTTCCCTGAGATTACAGTGGAGCAGATGAAAATAAAGGATCTTATCTCTCT
*
37456310 AAAGTTACAGTAGAGTAGATCGCATCAGGTCTTACTCCATGAGATTACAGCGGAATAAACTGAAT
131 AAAGTTACAGTAGAGTAGATCGCATCAGGTCTTACTCCATGAGATTACAGCGGAATAAACTGAAG
*
37456375 AAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTGTTCTCCCT
196 AAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGTGAATCTGTTCTCCCT
* * * *
37456440 GAGATTATAACAGAGCATATTAATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATT
261 GAGATTACAACAGAGCAGATTAATGCCAGTAATCCTATTACCCTGAGATTACAGTGGAACAGATT
* * **
37456505 AAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATTTCCCTG
326 AAAATAAAGGATATTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGGTCTAAACTCCCTG
* * * * *
37456570 AGATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAA-CAATAGTGGAGC-AGA
391 AGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT-AAGCAATAGTGGAGCTA-A
*
37456633 TCGAAGATGGTGAATCTTATCTCCAAAA
454 TCGAAAATGGTGAATCTTATCTCCAAAA
* * *
37456661 GATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTA
1 GATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGAAAATTGA
** * * *
37456726 AGCCTGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAAATAAAGGATCTTATCTCTCT
66 AGCAAGTAATCATATTTCCCTGAGATTACAGTGGAGCAGATGAAAATAAAGGATCTTATCTCTCT
* * * * *
37456791 AATGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGATATTACAGTGGAATAGACTGAA
131 AAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA-CTCCATGAGATTACAGCGGAATAAACTGAA
** *
37456856 GAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAAATTGTGAATCT-TCTCTCC
195 GAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGTGAATCTGT-TCTCC
* * * * *
37456920 CTGAGATTACAGCGGAGCAGATTGAA-GCCAGTAATCCTATTTCCCTTAGATTATAGTGGAACAG
259 CTGAGATTACAACAGAGCAGATT-AATGCCAGTAATCCTATTACCCTGAGATTACAGTGGAACAG
* *
37456984 ATTAAAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATTGCATCAGGTCTAAACTCC
323 ATTAAAATAAAGGATATTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGGTCTAAACTCC
*
37457049 CTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTA
388 CTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTA
***
37457114 ATCGAAAATGGTGAATCTTATCTCCCTGA
453 ATCGAAAATGGTGAATCTTATCTCCAAAA
* * *
37457143 GATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAG
1 GATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAG
37457195 TGGAACAGAT
Statistics
Matches: 477, Mismatches: 52, Indels: 9
0.89 0.10 0.02
Matches are distributed among these distances:
481 153 0.32
482 321 0.67
483 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (481 bp):
GATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGAAAATTGA
AGCAAGTAATCATATTTCCCTGAGATTACAGTGGAGCAGATGAAAATAAAGGATCTTATCTCTCT
AAAGTTACAGTAGAGTAGATCGCATCAGGTCTTACTCCATGAGATTACAGCGGAATAAACTGAAG
AAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGTGAATCTGTTCTCCCT
GAGATTACAACAGAGCAGATTAATGCCAGTAATCCTATTACCCTGAGATTACAGTGGAACAGATT
AAAATAAAGGATATTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGGTCTAAACTCCCTG
AGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATC
GAAAATGGTGAATCTTATCTCCAAAA
Found at i:37457282 original size:85 final size:85
Alignment explanation
Indices: 37457180--37457459 Score: 262
Period size: 85 Copynumber: 3.2 Consensus size: 85
37457170 CAATCCTATT
37457180 TCCCTGAGATTACAGTGGAACAGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGT
1 TCCCTGAGATTACAGTGGAACAGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGT
37457245 AGATCGCATCAGGTCTTATC
66 AGATCGCATCAGGTCTTATC
* * ** ** * * **
37457265 TCCCTGAGATTATAGTGGAATAGACCGAAGAATTTCA-GATCTTATCTC-CCTGAGATTACAGCG
1 TCCCTGAGATTACAGTGGAACAGA--TTAGAA-TAAAGGATCTTATCTCTCTTAAG-TTACAGTA
* * * *
37457328 GAGCT-GATTGAAGCTAGTAATCTTATC
62 GAG-TAGATCGCATC-AG--GTCTTATC
* * * *
37457355 TCCCTAAGATTACAGTGGAGC-GAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAG
1 TCCCTGAGATTACAGTGGAACAG-ATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAG
*
37457419 TAGATCGCATCAGGTCTTATA
65 TAGATCGCATCAGGTCTTATC
**
37457440 TATCTGAGATTACAGTGGAA
1 TCCCTGAGATTACAGTGGAA
37457460 TAGACCGAAT
Statistics
Matches: 146, Mismatches: 37, Indels: 24
0.71 0.18 0.12
Matches are distributed among these distances:
85 44 0.30
86 4 0.03
87 35 0.24
88 34 0.23
89 4 0.03
90 25 0.17
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (85 bp):
TCCCTGAGATTACAGTGGAACAGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGT
AGATCGCATCAGGTCTTATC
Found at i:37457322 original size:175 final size:175
Alignment explanation
Indices: 37457128--37457493 Score: 554
Period size: 175 Copynumber: 2.1 Consensus size: 175
37457118 AAAATGGTGA
* *
37457128 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
* *
37457193 AGTGGAAC-AGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAG
66 AGTGGAACGA-ATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* * * *
37457257 GTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAATTTCAG
130 GTCTTATATACCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * * *
37457303 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCTTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
*
37457368 AGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* * *
37457433 TCTTATATATCTGAGATTACAGTGGAATAGACCGAATAGTTCCAG
131 TCTTATATACCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
*
37457478 ATCTTGTCTCCCTGAG
1 ATCTTATCTCCCTGAG
37457494 CAATAGTGGA
Statistics
Matches: 172, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
175 171 0.99
176 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (175 bp):
ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
AGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATATACCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
Found at i:37457352 original size:219 final size:219
Alignment explanation
Indices: 37456665--37457375 Score: 971
Period size: 219 Copynumber: 3.3 Consensus size: 219
37456655 CCAAAAGATT
* *** * * *
37456665 ACAGCGGAGCAAATTGAAGCCAGT-AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGC
1 ACAGCGGAGCAAATCGAAAATAGTGAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
* * * * *
37456729 CTGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAAATAAAGGATCTTATCTCTC-TAA
66 CAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTTAA
* *
37456793 TGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGATATTACAGTGGAATAGACTGAAGA
131 -GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGA
*
37456858 AATCCAGATCTTATCTCCCTAAGCA
195 ATTCCAGATCTTATCTCCCTAAGCA
* * * *
37456883 ATAGTGGAGCAAATCGAAAATTGTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
1 ACAGCGGAGCAAATCGAAAATAGTGAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
* * *
37456948 CAGTAATCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAA
66 CAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTTAA
* * * * *
37457013 ATTACAGTAGAGTAGATTGCATCAGGTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAA
131 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAA
37457078 TTCCAGATCTTATCTCCCTAAGCA
196 TTCCAGATCTTATCTCCCTAAGCA
* * * * *
37457102 ATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGC
1 ACAGCGGAGCAAATCGAAAATAGTGAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
* *
37457167 CAGCAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAGAATAAAGGATCTTATCTCTCTTAA
66 CAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTTAA
*
37457232 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAA
131 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAA
* *
37457297 TTTCAGATCTTATCTCCCTGAG-A
196 TTCCAGATCTTATCTCCCTAAGCA
** * ** * *
37457320 TTACAGCGGAGCTGATTGAAGCTAGT-AATCTTATCTCCCTAAGATTACAGTGGAGC
1 --ACAGCGGAGCAAATCGAAAATAGTGAATCTTATCTCCCTGAGATTACAGCGGAGC
37457376 GAATTAAAAT
Statistics
Matches: 435, Mismatches: 54, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
218 18 0.04
219 398 0.91
220 19 0.04
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (219 bp):
ACAGCGGAGCAAATCGAAAATAGTGAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
CAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTTAA
GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAA
TTCCAGATCTTATCTCCCTAAGCA
Found at i:37457362 original size:482 final size:480
Alignment explanation
Indices: 37456180--37457329 Score: 1279
Period size: 482 Copynumber: 2.4 Consensus size: 480
37456170 ATCTCCCTGG
* * * * * *
37456180 GATTACAGCGGAGCAGATTGAACCCAGTAATCCTATCTCTCTGAGATTACAGCGGAGA-AAATTG
1 GATTACAGCAGAGCAAATTGAAGCCAGCAATCCTATCTCCCTGAGATTACAGCGGA-ACAAATTT
* * * * * *
37456244 AAG--TAAGTAATCATATTTCCCTGATATTATAGTGGAGCAGATGAAAATAAAGGATCTTATCTC
65 AAGAATAA--AATCCTATTTGCCTAAGATTACAGTAGAGCAGATG-AAATAAAGGATCTTATCTC
* * * * * * * *
37456307 TCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA-CTCCATGAGATTACAGCGGAATAAACT
127 CCTAATGTTACAGTAGAATAGACCGAATCAGATCTTATCTCCCTGAGATTACAGCGGAATAGACT
* *
37456371 GAATAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTGTTCT
192 GAAGAAAT-CAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGTGAATCTGTTCT
* * * *
37456436 CCCTGAGATTATAACAGAGCATATTAATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACG
256 CCCTGAGATTACAACAGAGCAGATTAATGCCAGTAATCCTATTACCCTGAGATTACAGTGGAACA
* * **
37456501 GATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATTTC
321 GATTAAAATAAAGGATATTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGGTCTAAACTC
* * * * *
37456566 CCTGAGATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATAGTGGAGCA
386 CCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTGAACAATAGTGGAGCA
*
37456631 GATCGAAGATGGTGAATCTTATCTCCAAAA
451 GATCGAAAATGGTGAATCTTATCTCCAAAA
* * *
37456661 GATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTA
1 GATTACAGCAGAGCAAATTGAAGCCAGCAATCCTATCTCCCTGAGATTACAGCGGAACAAATTTA
** ** * * * *
37456726 AGCCTGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAAATAAAGGATCTTATCTCTCT
66 AGAATAAAATCCTATTTGCCTAAGATTACAGTAGAGCAGATG-AAATAAAGGATCTTATCTCCCT
* * * * * *
37456791 AATGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGATATTACAGTGGAATAGACTGAA
130 AATGTTACAGTAGAATAGACCGAATCAGATCTTATCTCCCTGAGATTACAGCGGAATAGACTGAA
** *
37456856 GAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAAATTGTGAATCT-TCTCTCC
195 GAAAT-CAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGTGAATCTGT-TCTCC
* * * * *
37456920 CTGAGATTACAGCGGAGCAGATTGAA-GCCAGTAATCCTATTTCCCTTAGATTATAGTGGAACAG
258 CTGAGATTACAACAGAGCAGATT-AATGCCAGTAATCCTATTACCCTGAGATTACAGTGGAACAG
* *
37456984 ATTAAAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATTGCATCAGGTCTAAACTCC
322 ATTAAAATAAAGGATATTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGGTCTAAACTCC
*
37457049 CTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT-AAGCAATAGTGGAGCT
387 CTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTGAA-CAATAGTGGAGC-
***
37457113 A-ATCGAAAATGGTGAATCTTATCTCCCTGA
450 AGATCGAAAATGGTGAATCTTATCTCCAAAA
* * * *
37457143 GATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAGTGGAACAGA-TT-
1 GATTACAGCAGAGCAAATTGAAGCCAGCAATCCTATCTCCCTGAGATTACAGCGGAACAAATTTA
* * * * *
37457206 AGAATAAAGGATCTTATCTCT-CTTAAG-TTACAGTAGAGTAGATCG-CAT-CAGG-TCTTATCT
66 AGAATAAA--ATCCTAT-T-TGCCTAAGATTACAGTAGAGCAGAT-GAAATAAAGGATCTTATCT
* * *
37457266 CCCTGA-GATTATAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGA
126 CCCTAATG-TTACAGTAGAATAGACC---GAA--TCAGATCTTATCTCCCTGAGATTACAGCGGA
37457330 GCTGATTGAA
Statistics
Matches: 574, Mismatches: 76, Indels: 35
0.84 0.11 0.05
Matches are distributed among these distances:
478 1 0.00
479 25 0.04
480 7 0.01
481 154 0.27
482 348 0.61
483 10 0.02
484 29 0.05
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (480 bp):
GATTACAGCAGAGCAAATTGAAGCCAGCAATCCTATCTCCCTGAGATTACAGCGGAACAAATTTA
AGAATAAAATCCTATTTGCCTAAGATTACAGTAGAGCAGATGAAATAAAGGATCTTATCTCCCTA
ATGTTACAGTAGAATAGACCGAATCAGATCTTATCTCCCTGAGATTACAGCGGAATAGACTGAAG
AAATCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGTGAATCTGTTCTCCCTG
AGATTACAACAGAGCAGATTAATGCCAGTAATCCTATTACCCTGAGATTACAGTGGAACAGATTA
AAATAAAGGATATTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGGTCTAAACTCCCTGA
GATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTGAACAATAGTGGAGCAGATCG
AAAATGGTGAATCTTATCTCCAAAA
Found at i:37457540 original size:175 final size:174
Alignment explanation
Indices: 37457128--37457555 Score: 547
Period size: 175 Copynumber: 2.4 Consensus size: 174
37457118 AAAATGGTGA
* * * * * * * *
37457128 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGA-TACAGCGGAGCAGATCGAAGCTAGTAATCTTATCTCCATAAGATTAC
* * *
37457193 AGTGGAACAGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGG
65 AGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* * * *
37457258 TCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAATTTCAG
130 TCTTATATACCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * *
37457303 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCTTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGA-TACAGCGGAGCAGATCGAAGCTAGTAATCTTATCTCCATAAGATTAC
37457368 AGTGGAGC-GAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
65 AGTGGAGCAG-ATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* * *
37457432 GTCTTATATATCTGAGATTACAGTGGAATAGACCGAATAGTTCCAG
129 GTCTTATATACCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * *
37457478 ATCTTGTCTCCCTGAGCA-ATAGTGGAGCAGATCGAAGAC-AGTGAATCTTTTCTCCATAAGATT
1 ATCTTATCTCCCTGAG-ATACAGCGGAGCAGATCGAAG-CTAGT-AATCTTATCTCCATAAGATT
*
37457541 ACAGCGGAGCAGATT
63 ACAGTGGAGCAGATT
37457556 GAAGCCAGTA
Statistics
Matches: 223, Mismatches: 25, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
174 19 0.09
175 202 0.91
176 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (174 bp):
ATCTTATCTCCCTGAGATACAGCGGAGCAGATCGAAGCTAGTAATCTTATCTCCATAAGATTACA
GTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
CTTATATACCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
Done.