Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 121 of 226
Found at i:37457620 original size:219 final size:216
Alignment explanation
Indices: 37456519--37457632 Score: 760
Period size: 219 Copynumber: 5.1 Consensus size: 216
37456509 TAAAGGATAT
* * * * * * *
37456519 TATCTCTCTGA-AGTTACAGTAGAGTAGATCGCAT-CAGG-TCTTATTTCCCTGAGATTACTGTG
1 TATCTCTCTGAGA-TTACAGTAGAGCAGATCGAATAAAGGATCTTATCTCTCTGAGATTACAGTA
* * * * * * * *
37456581 GAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATAGTGGAGCAGATCGAAGATGGTGA
65 GAATAGACCG--CA--T-CAGATCTTATCTCCCTGAGCAATAGTGGAACAGATCGAAGA-AGTCA
** *
37456646 -ATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
124 GATCTTATCTCCCTAAGATTACAGCGGAGCAAATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
* * *
37456710 CAGCGGAGCAAATTTAAGCCTGTAATCC
189 CAGCGGAGCAGATTGAAGCCAGTAATCC
* * * *
37456738 TATTTGC-CTGAGATTACAGTGGAGCGGAT-GAAAATAAAGGATCTTATCTCTCTAATG-TTACA
1 TATCT-CTCTGAGATTACAGTAGAGCAGATCG--AATAAAGGATCTTATCTCTCTGA-GATTACA
* * * * * * *
37456800 GTAGAGTAGATCGCATCAGGTCTTATCTCCCTGA-TATTACAGTGGAATAGA-CTGAAGAAATCC
62 GTAGAATAGACCGCATCAGATCTTATCTCCCTGAGCA--ATAGTGGAACAGATC-GAAGAAGT-C
* * * ** * * *
37456863 AGATCTTATCTCCCTAAGCA--ATAGTGGAGCAAATCGAAAATTGTGAATCTTCTCTCCCTGAGA
123 AGATCTTATCTCCCTAAG-ATTACAGCGGAGCAAATTGAAGCTAGT-AATCCTATCTCCCTGAGA
37456926 TTACAGCGGAGCAGATTGAAGCCAGTAATCC
186 TTACAGCGGAGCAGATTGAAGCCAGTAATCC
* * * * * * ** *
37456957 TATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAATTACAGTA
1 TATCTCTCTGAGATTACAGTAGAGCAGA-TCGAATAAAGGATCTTATCTCTCTGAGATTACAGTA
* ** * * * * * * *
37457022 GAGTAGATTGCATCAGGTCTAAACTCCCTGAG-ATTCCAGTGGAATAGACCGAAGAATTCCAGAT
65 GAATAGACCGCATCAGATCTTATCTCCCTGAGCAAT--AGTGGAACAGATCGAAGAAGT-CAGAT
* * * * ** * *
37457086 CTTATCTCCCTAAGCA--ATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTAC
127 CTTATCTCCCTAAG-ATTACAGCGGAGCAAATTGAAGCTAGT-AATCCTATCTCCCTGAGATTAC
* *
37457149 AGCAGAGCAGATTGAAGCCAGCAATCC
190 AGCGGAGCAGATTGAAGCCAGTAATCC
* * * * * *
37457176 TATTTCCCTGAGATTACAGTGGAACAGATTAGAATAAAGGATCTTATCTCTCTTA-AGTTACAGT
1 TATCTCTCTGAGATTACAGTAGAGCAGA-TCGAATAAAGGATCTTATCTCTCTGAGA-TTACAGT
* * * * * *
37457240 AGAGTAGATCGCATCAGGTCTTATCTCCCTGAG-ATTATAGTGGAATAGACCGAAGAATTTCAGA
64 AGAATAGACCGCATCAGATCTTATCTCCCTGAGCA--ATAGTGGAACAGATCGAAGAA-GTCAGA
* ** * *
37457304 TCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCTTATCTCCCTAAGATTACA
126 TCTTATCTCCCTAAGATTACAGCGGAGCAAATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
* * *** * *
37457369 GTGGAGC-GAATTAAAATAAAG-GATCT
191 GCGGAGCAG-ATT-GAAGCCAGTAATCC
* * * * * *
37457395 TATCTCTCTGA-AGTTACAGTAGAGTAGATCGCAT-CAGG-TCTTATATATCTGAGATTACAGTG
1 TATCTCTCTGAGA-TTACAGTAGAGCAGATCGAATAAAGGATCTTATCTCTCTGAGATTACAGTA
* * * *
37457457 GAATAGACCGAATAGTTCCAGATCTTGTCTCCCTGAGCAATAGTGGAGCAGATCGAAGACAGTGA
65 GAATAGACCG--CA--T-CAGATCTTATCTCCCTGAGCAATAGTGGAACAGATCGAAGA-AGTCA
* * * * *
37457522 -ATCTTTTCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGGGATTA
124 GATCTTATCTCCCTAAGATTACAGCGGAGCAAATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
*
37457586 CAGCGGAGCAGATTGAACCCAGTAATCC
189 CAGCGGAGCAGATTGAAGCCAGTAATCC
37457614 TATCTCTCTGAGATTACAG
1 TATCTCTCTGAGATTACAG
37457633 CGGAGAAAAT
Statistics
Matches: 734, Mismatches: 119, Indels: 84
0.78 0.13 0.09
Matches are distributed among these distances:
216 27 0.04
217 21 0.03
218 49 0.07
219 536 0.73
220 53 0.07
221 22 0.03
222 25 0.03
223 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (216 bp):
TATCTCTCTGAGATTACAGTAGAGCAGATCGAATAAAGGATCTTATCTCTCTGAGATTACAGTAG
AATAGACCGCATCAGATCTTATCTCCCTGAGCAATAGTGGAACAGATCGAAGAAGTCAGATCTTA
TCTCCCTAAGATTACAGCGGAGCAAATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGCGGA
GCAGATTGAAGCCAGTAATCC
Found at i:37457875 original size:307 final size:307
Alignment explanation
Indices: 37457307--37457895 Score: 756
Period size: 307 Copynumber: 1.9 Consensus size: 307
37457297 TTTCAGATCT
*** * * *
37457307 TATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCTTATCTCCCTAAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATCTCCCTAAGATTACAGTA
* *
37457372 GAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
66 GAGCGAATAAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * * * ** * *
37457437 ATATATCTGAGATTACAGTGGAATAGACCGAATAGTTCCAGATCTTGTCTCCCTGAGCAATAGTG
131 ATATACCTGAGATTACAGCGGAATAAACCAAATAAATCCAGATCTTATCTCCCTAAGCAATAGTG
** * ** * *
37457502 GAGCAGATCGAAGACAGTGAATCTTTTCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
196 GAGCAGATAAAAAACAGTGAATCTAATCTCCATAAGATTACAACAGAGCAGATTGAAGCCAGTAA
*
37457567 TCCTATCT-CCCTGGGATTACAGCGGAGCAGATTGAACCCAGTAATCC
261 TCCTAT-TACCCTGAGATTACAGCGGAGCAGATTGAACCCAGTAATCC
* * * * *
37457614 TATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGATATTATAGTA
1 TATCTCCCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATCTCCCTAAGATTACAGTA
37457679 GAGC-AGATAAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
66 GAGCGA-ATAAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
* * *
37457743 TATCT-CCATGAGATTGCAGCGGAATAAACTAAATAAATCCAGATCTTATCTCCCTAAGCAATAG
130 TATATACC-TGAGATTACAGCGGAATAAACCAAATAAATCCAGATCTTATCTCCCTAAGCAATAG
** * * * *
37457807 TGGAGCTA-ATAAAAAATGGTGAATCTAATCTCCCTGAGATTATAACAGAGCAGATT-AATGCTA
194 TGGAGC-AGATAAAAAACAGTGAATCTAATCTCCATAAGATTACAACAGAGCAGATTGAA-GCCA
37457870 GTAATCCTATTACCCTGAGATTACAG
257 GTAATCCTATTACCCTGAGATTACAG
37457896 TGGAACGGAT
Statistics
Matches: 239, Mismatches: 38, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
306 5 0.02
307 233 0.97
308 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (307 bp):
TATCTCCCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATCTCCCTAAGATTACAGTA
GAGCGAATAAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
ATATACCTGAGATTACAGCGGAATAAACCAAATAAATCCAGATCTTATCTCCCTAAGCAATAGTG
GAGCAGATAAAAAACAGTGAATCTAATCTCCATAAGATTACAACAGAGCAGATTGAAGCCAGTAA
TCCTATTACCCTGAGATTACAGCGGAGCAGATTGAACCCAGTAATCC
Found at i:37458005 original size:219 final size:218
Alignment explanation
Indices: 37457624--37458114 Score: 538
Period size: 219 Copynumber: 2.2 Consensus size: 218
37457614 TATCTCTCTG
* * * * * * *
37457624 AGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGATATTATAGTAGAGCAGATAA
1 AGATTACAACAGAGCAAATTGAAGCCAGTAATCCTA-TTCCCTGAGATTACAGTAGAACAGATAA
* *
37457689 AAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGA
65 AAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTCCATGA
* * * * *
37457754 GATTGCAGCGGAATAAACTAAATAAATCCAGATCTTATCTCCCT-AAGCAATAGTGGAGCTA-AT
130 AATTACAGCGGAATAAACCAAAGAAATCCAGATCTTATCTCCCTGAA-CAATAGGGGAGC-AGAT
***
37457817 AAAAAATGGTGAATCTAATCTCCCTG
193 AAAAAATGGTGAATCTAATCTCCAAA
* * * * * *
37457843 AGATTATAACAGAGCAGATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATT
1 AGATTACAACAGAGCAAATTGAA-GCCAGTAATCCTATT-CCCTGAGATTACAGTAGAACAGATA
* * *
37457907 AAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATTTCCCTG
64 AAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTCCATG
* * ** * ** * * *
37457972 AAATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATAGGGGAGCAGATC
129 AAATTACAGCGGAATAAACCAAAGAAATCCAGATCTTATCTCCCTGAACAATAGGGGAGCAGATA
* * *
37458037 GAAGATGGTGAATCTTATCTCCAAA
194 AAAAATGGTGAATCTAATCTCCAAA
* *
37458062 AGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAG
1 AGATTACAACAGAGCAAATTGAAGCCAGTAATCCTAT-TCCCTGAGATTACAG
37458115 CGGAGCAAAT
Statistics
Matches: 223, Mismatches: 43, Indels: 12
0.80 0.15 0.04
Matches are distributed among these distances:
218 5 0.02
219 213 0.96
220 5 0.02
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (218 bp):
AGATTACAACAGAGCAAATTGAAGCCAGTAATCCTATTCCCTGAGATTACAGTAGAACAGATAAA
AATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTCCATGAA
ATTACAGCGGAATAAACCAAAGAAATCCAGATCTTATCTCCCTGAACAATAGGGGAGCAGATAAA
AAATGGTGAATCTAATCTCCAAA
Found at i:37458476 original size:480 final size:482
Alignment explanation
Indices: 37457581--37458594 Score: 1462
Period size: 480 Copynumber: 2.1 Consensus size: 482
37457571 ATCTCCCTGG
* *
37457581 GATTACAGCGGAGCAGATTGAACCCAGTAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGA
1 GATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGAAAATTGA
* *
37457646 AGCAAGTAATCCTATTTCCCTGATATTATAGTAGAGCAGATAAAAATAAAGGATCTTATCTCTCT
66 AGCAAGTAATCCTATTTCCCTGAGATTACAGTAGAGCAGATAAAAATAAAGGATCTTATCTCTCT
*
37457711 AAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTGCAGCGGAATAAACTAAA
131 AAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTACAGCGGAATAAACTAAA
* *
37457776 TAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTAATCTCCC
196 GAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGTGAATCTAATCTCCC
* * *
37457841 TGAGATTATAACAGAGCAGATTAATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGAT
261 TGAGATTACAACAGAGCAGATTAATGCCAGTAATCCTATTACCCTGAGATTACAGTGGAACAGAT
* * * **
37457906 TAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATTTCCCT
326 TAAAATAAAGGATATTATCTCTCTAAAATTACAGTAGAGTAGATCGCATCAAGTCTAAACTCCCT
* * * * *
37457971 GAAATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAA-CAATAGGGGAGC-AG
391 GAAATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT-AAGCAATAGGGGAGCTA-
*
37458034 ATCGAAGATGGTGAATCTTATCTCCAAAA
454 ATCGAAAATGGTGAATCTTATCTCCAAAA
* * *
37458063 GATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTA
1 GATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGAAAATTGA
* * * * *
37458128 AGCCAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAAATAAAGGATCTTATCTCTCT
66 AGCAAGTAATCCTATTTCCCTGAGATTACAGTAGAGCAGATAAAAATAAAGGATCTTATCTCTCT
* * * * *
37458193 AATGTTACAGTAGAGTAGATCGCATCAGGTCTTATCT-C-TGATATTACAGTGGAATAGACTGAA
131 AAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTACAGCGGAATAAACTAAA
** * **
37458256 GAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAAATTGTGAATCTTCTCTCCC
196 GAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGTGAATCTAATCTCCC
* * * * *
37458321 TGAGATTACAGCGGAGCAGATTGAA-GCCAGTAATCCTATTTCCCTTAGATTATAGTGGAACAGA
261 TGAGATTACAACAGAGCAGATT-AATGCCAGTAATCCTATTACCCTGAGATTACAGTGGAACAGA
* * *
37458385 TTAAAATAAAGGATCTTATCTCTCTAAAATTACAGTAGAGTAGATTGCATCAGGTCTAAACTCCC
325 TTAAAATAAAGGATATTATCTCTCTAAAATTACAGTAGAGTAGATCGCATCAAGTCTAAACTCCC
* * *
37458450 TGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAA
390 TGAAATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGGGGAGCTAA
***
37458515 TCGAAAATGGTGAATCTTATCTCCCTGA
455 TCGAAAATGGTGAATCTTATCTCCAAAA
* * *
37458543 GATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAG
1 GATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAG
37458595 TGGAACAGAT
Statistics
Matches: 472, Mismatches: 57, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
479 2 0.00
480 312 0.66
481 4 0.01
482 154 0.33
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (482 bp):
GATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGAAAATTGA
AGCAAGTAATCCTATTTCCCTGAGATTACAGTAGAGCAGATAAAAATAAAGGATCTTATCTCTCT
AAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTACAGCGGAATAAACTAAA
GAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGTGAATCTAATCTCCC
TGAGATTACAACAGAGCAGATTAATGCCAGTAATCCTATTACCCTGAGATTACAGTGGAACAGAT
TAAAATAAAGGATATTATCTCTCTAAAATTACAGTAGAGTAGATCGCATCAAGTCTAAACTCCCT
GAAATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGGGGAGCTAAT
CGAAAATGGTGAATCTTATCTCCAAAA
Found at i:37458559 original size:219 final size:218
Alignment explanation
Indices: 37458091--37458715 Score: 955
Period size: 219 Copynumber: 2.9 Consensus size: 218
37458081 TGAAGCCAGT
* * * *
37458091 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * * *
37458156 CAGTGGAGCGGATGAAAATAAAGGATCTTATCTCTCTAATGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
* * * * *
37458221 GTCTTA-TCTCTGATATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAAT
131 GTCTAACTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAAT
*
37458285 AGTGGAGCAAATCGAAAATTGTG
196 AGTGGAGCAAATCGAAAATGGTG
* *
37458308 AATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * *
37458373 TAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAATTACAGTAGAGTAGATTGCATCAG
66 CAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
*
37458438 GTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAA
131 GTCT-AACTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAA
*
37458503 TAGTGGAGCTAATCGAAAATGGTG
195 TAGTGGAGCAAATCGAAAATGGTG
* *
37458527 AATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* *
37458592 CAGTGGAACAGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
* * * **
37458657 GTCTTATCTTCCTGAGATTATAGTGGAATAGACCGAAGAATTTTAGATCTTATCTCCCT
131 GTC-TAACTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT
37458716 GAGATTACAG
Statistics
Matches: 369, Mismatches: 36, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
217 121 0.33
218 1 0.00
219 246 0.67
220 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (218 bp):
AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
CAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
GTCTAACTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAAT
AGTGGAGCAAATCGAAAATGGTG
Found at i:37458683 original size:85 final size:84
Alignment explanation
Indices: 37458582--37458859 Score: 231
Period size: 85 Copynumber: 3.2 Consensus size: 84
37458572 ATCCTATTTC
37458582 CCTGAGATTACAGTGGAACAGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAG
1 CCTGAGATTACAGTGGAACAGATTAGAATAAA-GATCTTATCTCTCTTAAGTTACAGTAGAGTAG
37458647 ATCGCATCAGGTCTTATCTT
65 ATCGCATCAGGTCTTATCTT
* * ** ** * * **
37458667 CCTGAGATTATAGTGGAATAGACCGAAGAATTTTAGATCTTATCTC-CCTGAGATTACAGCGGAG
1 CCTGAGATTACAGTGGAACAGA--TTAGAA-TAAAGATCTTATCTCTCTTAAG-TTACAGTAGAG
* * * * * *
37458731 CT-GATTGAAGCTAGTAATCCTATCTC
62 -TAGATCGCATC-AG--GTCTTATCTT
* * * * *
37458757 CCTAAGATTACAGTGGAGC-GAATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAAAGTA
1 CCTGAGATTACAGTGGAACAG-ATTAGAAT-AAAGATCTTATCTCTCTTAAGTTACAGTAGAGTA
37458821 GATCGCATCAGGTCTTATC-T
64 GATCGCATCAGGTCTTATCTT
37458841 CTCTGAGATTACAGTGGAA
1 C-CTGAGATTACAGTGGAA
37458860 TAGACTGAAT
Statistics
Matches: 141, Mismatches: 39, Indels: 26
0.68 0.19 0.13
Matches are distributed among these distances:
84 1 0.01
85 41 0.29
86 4 0.03
87 34 0.24
88 34 0.24
89 4 0.03
90 23 0.16
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30
Consensus pattern (84 bp):
CCTGAGATTACAGTGGAACAGATTAGAATAAAGATCTTATCTCTCTTAAGTTACAGTAGAGTAGA
TCGCATCAGGTCTTATCTT
Found at i:37458726 original size:175 final size:175
Alignment explanation
Indices: 37458528--37458893 Score: 538
Period size: 175 Copynumber: 2.1 Consensus size: 175
37458518 AAAATGGTGA
* *
37458528 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
* * * *
37458593 AGTGGAAC-AGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAG
66 AGTGGAACGA-ATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAAAGTAGATCGCATCAG
* **
37458657 GTCTTATCT-TCCTGAGATTATAGTGGAATAGACCGAAGAATTTTAG
130 GTCTTATCTCT-CTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * *
37458703 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
*
37458768 AGTGGAGCGAATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAAAGTAGATCGCATCAGG
66 AGTGGAACGAATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAAAGTAGATCGCATCAGG
* * *
37458833 TCTTATCTCTCTGAGATTACAGTGGAATAGACTGAATAGTTCCAG
131 TCTTATCTCTCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
*
37458878 ATCTTGTCTCCCTGAG
1 ATCTTATCTCCCTGAG
37458894 CAATAGTGGA
Statistics
Matches: 171, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
175 169 0.99
176 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (175 bp):
ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
AGTGGAACGAATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAAAGTAGATCGCATCAGG
TCTTATCTCTCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
Found at i:37458814 original size:219 final size:219
Alignment explanation
Indices: 37458067--37458775 Score: 935
Period size: 219 Copynumber: 3.3 Consensus size: 219
37458057 CCAAAAGATT
* *** * *
37458067 ACAGCGGAGCAAATTGAAGCCAGT-AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGC
1 ACAGCGGAGCAAATCGAAAATAGTGAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
* * * *
37458131 CAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAAATAAAGGATCTTATCTCTC-TAA
66 CAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTTAA
* *
37458195 TGTTACAGTAGAGTAGATCGCATCAGGTCTTATC-T-CTGATATTACAGTGGAATAGACTGAAGA
131 -GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGACCGAAGA
*
37458258 AATCCAGATCTTATCTCCCTAAGCA
195 ATTCCAGATCTTATCTCCCTAAGCA
* * * * *
37458283 ATAGTGGAGCAAATCGAAAATTGTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
1 ACAGCGGAGCAAATCGAAAATAGTGAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
* * *
37458348 CAGTAATCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAA
66 CAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTTAA
* * * * * *
37458413 ATTACAGTAGAGTAGATTGCATCAGGTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAA
131 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGACCGAAGAA
37458478 TTCCAGATCTTATCTCCCTAAGCA
196 TTCCAGATCTTATCTCCCTAAGCA
* * * * * *
37458502 ATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGC
1 ACAGCGGAGCAAATCGAAAATAGTGAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
* *
37458567 CAGCAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAGAATAAAGGATCTTATCTCTCTTAA
66 CAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTTAA
*
37458632 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTTCCTGAGATTATAGTGGAATAGACCGAAGAA
131 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGACCGAAGAA
** *
37458697 TTTTAGATCTTATCTCCCTGAG-A
196 TTCCAGATCTTATCTCCCTAAGCA
** * ** * *
37458720 TTACAGCGGAGCTGATTGAAGCTAGT-AATCCTATCTCCCTAAGATTACAGTGGAGC
1 --ACAGCGGAGCAAATCGAAAATAGTGAATCCTATCTCCCTGAGATTACAGCGGAGC
37458776 GAATTAAAAT
Statistics
Matches: 430, Mismatches: 57, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
216 17 0.04
217 120 0.28
218 3 0.01
219 273 0.63
220 17 0.04
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (219 bp):
ACAGCGGAGCAAATCGAAAATAGTGAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
CAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTTAA
GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGACCGAAGAA
TTCCAGATCTTATCTCCCTAAGCA
Found at i:37458940 original size:175 final size:174
Alignment explanation
Indices: 37458528--37458955 Score: 522
Period size: 175 Copynumber: 2.4 Consensus size: 174
37458518 AAAATGGTGA
* * * * * * *
37458528 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGA-TACAGCGGAGCAGATCGAAGCTAGTAATCCTATCTCCATAAGATTAC
* * * * *
37458593 AGTGGAACAGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGG
65 AGTGGAGCAGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAAAGTAGATCGCATCAGG
* **
37458658 TCTTATCTTCCTGAGATTATAGTGGAATAGACCGAAGAATTTTAG
130 TCTTATCTTCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * *
37458703 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGA-TACAGCGGAGCAGATCGAAGCTAGTAATCCTATCTCCATAAGATTAC
37458768 AGTGGAGC-GAATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAAAGTAGATCGCATCAG
65 AGTGGAGCAG-ATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAAAGTAGATCGCATCAG
* * *
37458832 GTCTTATC-TCTCTGAGATTACAGTGGAATAGACTGAATAGTTCCAG
129 GTCTTATCTTC-CTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * * *
37458878 ATCTTGTCTCCCTGAGCA-ATAGTGGAGCAGATCGAAGAC-AGTGAATCTTTTCTCCATAAGATT
1 ATCTTATCTCCCTGAG-ATACAGCGGAGCAGATCGAAG-CTAGT-AATCCTATCTCCATAAGATT
*
37458941 ACAGCGGAGCAGATT
63 ACAGTGGAGCAGATT
37458956 GAAGCCAATA
Statistics
Matches: 221, Mismatches: 26, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
174 21 0.10
175 198 0.90
176 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (174 bp):
ATCTTATCTCCCTGAGATACAGCGGAGCAGATCGAAGCTAGTAATCCTATCTCCATAAGATTACA
GTGGAGCAGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAAAGTAGATCGCATCAGGT
CTTATCTTCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
Found at i:37459012 original size:263 final size:263
Alignment explanation
Indices: 37458707--37459788 Score: 978
Period size: 263 Copynumber: 4.1 Consensus size: 263
37458697 TTTTAGATCT
* * *
37458707 TATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
*
37458772 GAGCGAATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAAAGTAGATCGCATCAGGTCTT
66 GAGCGAATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * * *
37458837 ATCTCTCTGAGATTACAGTGGAATAGACTGAATAGTTCCAGATCTTGTCTCCCTGAGCAATAGTG
131 ATCTCCCTGAAATTACAGTGGAATAGACTGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGTG
* * *
37458902 GAGCAGATCGAAGACAGTGAATCTTTTCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAATAA
196 GAGCAGATCGAAGATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
37458967 TCC
261 TCC
* * * *
37458970 TATCTCCCTGGGATTACAGCGGAGCAGATTGAACCCAGTAATCCTATCTCTCTGAGATTACAGCG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
** * ** * * * * * * *** *
37459035 GAGAAAATTGAAGCAAGTA-ATCCTATTTCCCTGATA-TTATAGTAGAGCAGATAAAAATAAAGG
66 GAGCGAATTAAAATAA-AAGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGAT-CGCAT-CAGG
* * * * * *
37459098 ATCTTATCTCTCT-AAAGTTACAGTAGAGTAGA-TCG--CA--T-CAGGTCTTATCTCCATGAG-
127 -TCTTATCTCCCTGAAA-TTACAGTGGAATAGACT-GAAGAGTTCCAGATCTTATCTCCCTGAGC
* * ** * * * * * * *
37459155 ATTACAGCGGAATA-AACTGAATA-AATCCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-
189 A--ATAGTGGAGCAGATC-GAAGATAGT-GA-ATCTTATCTCCATAAG-ATTACAGCGGAGC-AG
** ****
37459215 ATAAAAAATGGTGAAT-C
247 ATTGAAGCCAGT-AATCC
* * * * * *
37459232 TAATCTCCCTGAGACTATAACAGAGCAGATT-AATGCTAGTAATCCTAT-TACCCTGAGTTTACA
1 T-ATCTCCCTGAGATTACAGCGGAGCAGATTGAA-GCCAGTAATCCTATCT-CCCTGAGATTACA
* * * * * *
37459295 GTGGAACGGATTAAAATAAAGGATATTATCTCTGTGAAGTTACAGTAGAGTAGATCGCATCAAGT
63 GTGGAGCGAATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
* * * * * * *
37459360 CTTATTTCCCTGAAATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATA
128 CTTATCTCCCTGAAATTACAGTGGAATAGACTGAAGAGTTCCAGATCTTATCTCCCTGAGCAATA
* * *
37459425 GTGGAGCAGATCGAAGATGGTGAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAG
193 GTGGAGCAGATCGAAGATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAG
37459490 TAATCC
258 TAATCC
* * * *
37459496 TATCTCCCTGAGATTACAGCGGAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
* * *
37459561 GAGCGGATGAAAATAAAGGATCTTATCTCTCT-AATGTTACAGTAGAGTAGATCGCATCAGGTCT
66 GAGCGAATTAAAATAAAAGATCTTATCTCTCTGAA-GTTACAGTAGAGTAGATCGCATCAGGTCT
* ** *
37459625 TATCTCCCTGATATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGT
130 TATCTCCCTGAAATTACAGTGGAATAGACTGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGT
* * ** * * *
37459690 GGAGCAAATCGAAAATTTTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTA
195 GGAGCAGATCGAAGATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTA
37459755 ATCC
260 ATCC
* * * * *
37459759 TATTTCCCTTAGATTATAGTGGAACAGATT
1 TATCTCCCTGAGATTACAGCGGAGCAGATT
37459789 AAAATAAAGG
Statistics
Matches: 631, Mismatches: 151, Indels: 74
0.74 0.18 0.09
Matches are distributed among these distances:
260 23 0.04
261 25 0.04
262 38 0.06
263 457 0.72
264 38 0.06
265 23 0.04
266 27 0.04
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (263 bp):
TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
GAGCGAATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
ATCTCCCTGAAATTACAGTGGAATAGACTGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGTG
GAGCAGATCGAAGATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
TCC
Found at i:37459277 original size:307 final size:307
Alignment explanation
Indices: 37458707--37459279 Score: 767
Period size: 307 Copynumber: 1.9 Consensus size: 307
37458697 TTTTAGATCT
*** * *
37458707 TATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATCTCCCTAAGATTACAGTA
* *
37458772 GAGCGAATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAAAGTAGATCGCATCAGGTCTT
66 GAGCGAATAAAAATAAAAGATCTTATCTCTCTAAAGTTACAGTAAAGTAGATCGCATCAGGTCTT
* * ** * *
37458837 ATCTCTCTGAGATTACAGTGGAATAGACTGAATAGTTCCAGATCTTGTCTCCCTGAGCAATAGTG
131 ATCTCTCTGAGATTACAGCGGAATAAACTGAATAAATCCAGATCTTATCTCCCTAAGCAATAGTG
** * ** * * *
37458902 GAGCAGATCGAAGACAGTGAATCTTTTCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAATAA
196 GAGCAGATAAAAAACAGTGAATCTAATCTCCATAAGACTACAACAGAGCAGATTGAAGCCAATAA
37458967 TCCTATCTCCCTGGGATTACAGCGGAGCAGATTGAACCCAGTAATCC
261 TCCTATCTCCCTGGGATTACAGCGGAGCAGATTGAACCCAGTAATCC
* * * * *
37459014 TATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGATATTATAGTA
1 TATCTCCCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATCTCCCTAAGATTACAGTA
* *
37459079 GAGC-AGATAAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
66 GAGCGA-ATAAAAATAAAAGATCTTATCTCTCTAAAGTTACAGTAAAGTAGATCGCATCAGGTCT
37459143 TATCTC-CATGAGATTACAGCGGAATAAACTGAATAAATCCAGATCTTATCTCCCTAAGCAATAG
130 TATCTCTC-TGAGATTACAGCGGAATAAACTGAATAAATCCAGATCTTATCTCCCTAAGCAATAG
** * * * *
37459207 TGGAGCTA-ATAAAAAATGGTGAATCTAATCTCCCTGAGACTATAACAGAGCAGATT-AATGCTA
194 TGGAGC-AGATAAAAAACAGTGAATCTAATCTCCATAAGACTACAACAGAGCAGATTGAA-GCCA
*
37459270 GTAATCCTAT
257 ATAATCCTAT
37459280 TACCCTGAGT
Statistics
Matches: 227, Mismatches: 35, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
306 4 0.02
307 222 0.98
308 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (307 bp):
TATCTCCCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATCTCCCTAAGATTACAGTA
GAGCGAATAAAAATAAAAGATCTTATCTCTCTAAAGTTACAGTAAAGTAGATCGCATCAGGTCTT
ATCTCTCTGAGATTACAGCGGAATAAACTGAATAAATCCAGATCTTATCTCCCTAAGCAATAGTG
GAGCAGATAAAAAACAGTGAATCTAATCTCCATAAGACTACAACAGAGCAGATTGAAGCCAATAA
TCCTATCTCCCTGGGATTACAGCGGAGCAGATTGAACCCAGTAATCC
Found at i:37459458 original size:482 final size:482
Alignment explanation
Indices: 37458965--37459996 Score: 1476
Period size: 482 Copynumber: 2.1 Consensus size: 482
37458955 TGAAGCCAAT
* * * *
37458965 AATCCTATCTCCCTGGGATTACAGCGGAGCAGATTGAACCCAGTAATCCTATCTCTCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
* *
37459030 CAGCGGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGATATTATAGTAGAGCAGATAAAAATAA
66 CAGCGGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGAGATTACAGTAGAGCAGATAAAAATAA
37459095 AGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTAC
131 AGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTAC
* *
37459160 AGCGGAATAAACTGAATAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATG
196 AGCGGAATAAACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATG
* *
37459225 GTGAATCTAATCTCCCTGAGACTATAACAGAGCAGATT-AATGCTAGTAATCCTATTACCCTGAG
261 GTGAATCTAATCTCCCTGAGACTACAACAGAGCAGATTGAA-GCCAGTAATCCTATTACCCTGAG
* * * *
37459289 TTTACAGTGGAACGGATTAAAATAAAGGATATTATCTCTGTGAAGTTACAGTAGAGTAGATCGCA
325 ATTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAATTACAGTAGAGTAGATCGCA
* ** * * * * *
37459354 TCAAGTCTTATTTCCCTGAAATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGA
390 TCAAGTCTAAACTCCCTGAAATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT-A
*
37459419 A-CAATAGTGGAGC-AGATCGAAGATGGTG
454 AGCAATAGTGGAGCTA-ATCGAAAATGGTG
*** *
37459447 AATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
* * * * * * *
37459512 CAGCGGAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAAATAA
66 CAGCGGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGAGATTACAGTAGAGCAGATAAAAATAA
* * *
37459577 AGGATCTTATCTCTCTAATGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGATATTAC
131 AGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTAC
* * ** *
37459642 AGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAAATT
196 AGCGGAATAAACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATG
* ** * * * * *
37459707 TTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTAGA
261 GTGAATCTAATCTCCCTGAGACTACAACAGAGCAGATTGAAGCCAGTAATCCTATTACCCTGAGA
* * *
37459772 TTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATTGCAT
326 TTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAATTACAGTAGAGTAGATCGCAT
* * *
37459837 CAGGTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAG
391 CAAGTCTAAACTCCCTGAAATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAG
37459902 CAATAGTGGAGCTAATCGAAAATGGTG
456 CAATAGTGGAGCTAATCGAAAATGGTG
* * * *
37459929 AATCTTATCTCCCTGAGAATACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
37459994 CAG
66 CAG
37459997 TGGAACAGAT
Statistics
Matches: 483, Mismatches: 64, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
481 2 0.00
482 478 0.99
483 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (482 bp):
AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
CAGCGGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGAGATTACAGTAGAGCAGATAAAAATAA
AGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTAC
AGCGGAATAAACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATG
GTGAATCTAATCTCCCTGAGACTACAACAGAGCAGATTGAAGCCAGTAATCCTATTACCCTGAGA
TTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAATTACAGTAGAGTAGATCGCAT
CAAGTCTAAACTCCCTGAAATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAG
CAATAGTGGAGCTAATCGAAAATGGTG
Found at i:37459494 original size:219 final size:218
Alignment explanation
Indices: 37459024--37459514 Score: 549
Period size: 219 Copynumber: 2.2 Consensus size: 218
37459014 TATCTCTCTG
* * *
37459024 AGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGA-TATTATAGTAGAGCAGATA
1 AGATTACAGCGGAGCAAATTGAAGCAAGTAATCCTA-TTCCCTGAGT-TTACAGTAGAACAGATA
* *
37459088 AAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATG
64 AAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTCCATG
* * *
37459153 AGATTACAGCGGAATAAACTGAATAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATA
129 AAATTACAGCGGAATAAACCGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATA
***
37459218 AAAAATGGTGAATCTAATCTCCCTG
194 AAAAATGGTGAATCTAATCTCCAAA
* * * * * * * * *
37459243 AGACTATAACAGAGCAGATT-AATGCTAGTAATCCTATTACCCTGAGTTTACAGTGGAACGGATT
1 AGATTACAGCGGAGCAAATTGAA-GCAAGTAATCCTATT-CCCTGAGTTTACAGTAGAACAGATA
* * * *
37459307 AAAATAAAGGATATTATCTCTGTGAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATTTCCCTG
64 AAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTCCATG
* * ** ** * *
37459372 AAATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAA-CAATAGTGGAGC-AGA
129 AAATTACAGCGGAATAAACCGAAGAAATCCAGATCTTATCTCCCT-AAGCAATAGTGGAGCTA-A
** * *
37459435 TCGAAGATGGTGAATCTTATCTCCAAA
192 TAAAAAATGGTGAATCTAATCTCCAAA
* *
37459462 AGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAG
1 AGATTACAGCGGAGCAAATTGAAGCAAGTAATCCTAT-TCCCTGAGTTTACAG
37459515 CGGAGCAAAT
Statistics
Matches: 222, Mismatches: 43, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
218 5 0.02
219 211 0.95
220 6 0.03
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (218 bp):
AGATTACAGCGGAGCAAATTGAAGCAAGTAATCCTATTCCCTGAGTTTACAGTAGAACAGATAAA
AATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTCCATGAA
ATTACAGCGGAATAAACCGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAA
AAATGGTGAATCTAATCTCCAAA
Found at i:37459759 original size:219 final size:218
Alignment explanation
Indices: 37459491--37460117 Score: 984
Period size: 219 Copynumber: 2.9 Consensus size: 218
37459481 TGAAGCCAGT
* * * *
37459491 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * *
37459556 CAGTGGAGCGGATGAAAATAAAGGATCTTATCTCTCTAATGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAA-GTTACAGTAGAGTAGATCGCATCAG
* * *
37459621 GTCTTATCTCCCTGATATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAA
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAA
**
37459686 TAGTGGAGCAAATCGAAAATTTTG
195 TAGTGGAGCAAATCGAAAATGGTG
* *
37459710 AATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * *
37459775 TAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATTGCATCAG
66 CAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCT-AAGTTACAGTAGAGTAGATCGCATCAG
* * *
37459840 GTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAA
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAA
*
37459905 TAGTGGAGCTAATCGAAAATGGTG
195 TAGTGGAGCAAATCGAAAATGGTG
* * *
37459929 AATCTTATCTCCCTGAGAATACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
*
37459994 CAGTGGAACAGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAACAGATTAAAATAAAGGATCTTATCTCTC-TAAGTTACAGTAGAGTAGATCGCATCAG
* *
37460059 GTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCT
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT
37460118 GAGATTACAG
Statistics
Matches: 371, Mismatches: 35, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
219 368 0.99
220 3 0.01
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (218 bp):
AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
CAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAAT
AGTGGAGCAAATCGAAAATGGTG
Found at i:37460084 original size:85 final size:85
Alignment explanation
Indices: 37459982--37460261 Score: 262
Period size: 85 Copynumber: 3.2 Consensus size: 85
37459972 CAATCCTATT
37459982 TCCCTGAGATTACAGTGGAACAGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGT
1 TCCCTGAGATTACAGTGGAACAGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGT
37460047 AGATCGCATCAGGTCTTATC
66 AGATCGCATCAGGTCTTATC
* * ** ** * * **
37460067 TCCCTGAGATTATAGTGGAATAGACCGAAGAATTTCA-GATCTTATCTC-CCTGAGATTACAGCG
1 TCCCTGAGATTACAGTGGAACAGA--TTAGAA-TAAAGGATCTTATCTCTCTTAAG-TTACAGTA
* * * * *
37460130 GAGCT-GATTGAAGCTAGTAATCCTATC
62 GAG-TAGATCGCATC-AG--GTCTTATC
* * * * *
37460157 TCCCTAAGATTATAGTGGAGC-GAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAG
1 TCCCTGAGATTACAGTGGAACAG-ATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAG
37460221 TAGATCGCATCAGGTCTTATC
65 TAGATCGCATCAGGTCTTATC
*
37460242 TCTCTGAGATTACAGTGGAA
1 TCCCTGAGATTACAGTGGAA
37460262 TAGACTGAAT
Statistics
Matches: 146, Mismatches: 37, Indels: 24
0.71 0.18 0.12
Matches are distributed among these distances:
85 44 0.30
86 4 0.03
87 35 0.24
88 34 0.23
89 4 0.03
90 25 0.17
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (85 bp):
TCCCTGAGATTACAGTGGAACAGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGT
AGATCGCATCAGGTCTTATC
Found at i:37460141 original size:175 final size:175
Alignment explanation
Indices: 37459930--37460300 Score: 555
Period size: 175 Copynumber: 2.1 Consensus size: 175
37459920 AAAATGGTGA
* *
37459930 ATCTTATCTCCCTGAGAATACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGAATACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
* *
37459995 AGTGGAAC-AGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAG
66 AGTGGAACGA-ATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* *
37460059 GTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAATTTCAG
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * * * *
37460105 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAT
1 ATCTTATCTCCCTGAGAATACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
*
37460170 AGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* * * *
37460235 TCTTATCTCTCTGAGATTACAGTGGAATAGACTGAATAGTTCCAG
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
*
37460280 ATCTTGTCTCCCTGAGCAATA
1 ATCTTATCTCCCTGAG-AATA
37460301 GTGGAGCAGA
Statistics
Matches: 175, Mismatches: 19, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
175 171 0.98
176 4 0.02
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.29
Consensus pattern (175 bp):
ATCTTATCTCCCTGAGAATACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
AGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
Found at i:37460164 original size:482 final size:480
Alignment explanation
Indices: 37458984--37460131 Score: 1256
Period size: 482 Copynumber: 2.4 Consensus size: 480
37458974 TCCCTGGGAT
* * * * *
37458984 TACAGCGGAGCAGATTGAACCCAGTAATCCTATCTCTCTGAGATTACAGCGGAGA-AAATTGAAG
1 TACAGCAGAGCAAATTGAAGCCAGCAATCCTATCTCCCTGAGATTACAGCGGA-ACAAATTGAAG
* * * * * * *
37459048 CAAGTAATCCTATTTCCCTGATATTATAGTAGAGCAGATAAAAATAAAGGATCTTATCTCTCTAA
65 AAAGTAATCCTATTTGCCTAAGATTACAGTAGAGCAGAT-GAAATAAAGGATCTTATCTCCCTAA
* * * * * * * *
37459113 AGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTACAGCGGAATAAACTGAATA
129 TGTTACAGTAGAATAGACCGAATCAGATCTTATCTCCCTGAGATTACAGCGGAATAGACTGAAGA
* *
37459178 AATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTAATCTCCCTG
194 AAT-CAGATCCTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGTGAATCTAATCTCCCTG
* * * *
37459243 AGACTATAACAGAGCAGATTAATGCTAGTAATCCTATTACCCTGAGTTTACAGTGGAACGGATTA
258 AGACTACAACAGAGCAGATTAATGCCAGTAATCCTATTACCCTGAGATTACAGTGGAACAGATTA
* * * **
37459308 AAATAAAGGATATTATCTCTGTGAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATTTCCCTGA
323 AAATAAAGGATATTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAAGTCTAAACTCCCTGA
* * * * *
37459373 AATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATAGTGGAGCAGATCG
388 AATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTGAACAATAGTGGAGCAGATCG
* *
37459438 AAGATGGTGAATCTTATCTCCAAAAGAT
453 AAAATGGTGAATCTTATCTCCAAAAGAA
* * * * *
37459466 TACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGC
1 TACAGCAGAGCAAATTGAAGCCAGCAATCCTATCTCCCTGAGATTACAGCGGAACAAATTGAAGA
* * * * *
37459531 CAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAAATAAAGGATCTTATCTCTCTAAT
66 AAGTAATCCTATTTGCCTAAGATTACAGTAGAGCAGATG-AAATAAAGGATCTTATCTCCCTAAT
* * * * * *
37459596 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGATATTACAGTGGAATAGACTGAAGAA
130 GTTACAGTAGAATAGACCGAATCAGATCTTATCTCCCTGAGATTACAGCGGAATAGACTGAAGAA
* ** ** **
37459661 ATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAAATTTTGAATCTTCTCTCCCTGA
195 AT-CAGATCCTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGTGAATCTAATCTCCCTGA
* * * * * *
37459726 GATTACAGCGGAGCAGATTGAA-GCCAGTAATCCTATTTCCCTTAGATTATAGTGGAACAGATTA
259 GACTACAACAGAGCAGATT-AATGCCAGTAATCCTATTACCCTGAGATTACAGTGGAACAGATTA
* * *
37459790 AAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATTGCATCAGGTCTAAACTCCCTGA
323 AAATAAAGGATATTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAAGTCTAAACTCCCTGA
* *
37459855 GATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT-AAGCAATAGTGGAGCTA-AT
388 AATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTGAA-CAATAGTGGAGC-AGAT
***
37459918 CGAAAATGGTGAATCTTATCTCCCTGAGAA
451 CGAAAATGGTGAATCTTATCTCCAAAAGAA
* * * * *
37459948 TACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAGAAT
1 TACAGCAGAGCAAATTGAAGCCAGCAATCCTATCTCCCTGAGATTACAGCGGAACAAATT-GAAG
* * * * * *
37460013 AAAG-GATCTTATCTCT-CTTAAG-TTACAGTAGAGTAGATCG-CAT-CAGG-TCTTATCTCCCT
65 AAAGTAATCCTAT-T-TGCCTAAGATTACAGTAGAGCAGAT-GAAATAAAGGATCTTATCTCCCT
* * *
37460072 GA-GATTATAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGA
127 AATG-TTACAGTAGAATAGACC---GAA--TCAGATCTTATCTCCCTGAGATTACAGCGGA
37460132 GCTGATTGAA
Statistics
Matches: 566, Mismatches: 85, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
478 1 0.00
479 25 0.04
480 3 0.01
481 4 0.01
482 491 0.87
483 13 0.02
484 29 0.05
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (480 bp):
TACAGCAGAGCAAATTGAAGCCAGCAATCCTATCTCCCTGAGATTACAGCGGAACAAATTGAAGA
AAGTAATCCTATTTGCCTAAGATTACAGTAGAGCAGATGAAATAAAGGATCTTATCTCCCTAATG
TTACAGTAGAATAGACCGAATCAGATCTTATCTCCCTGAGATTACAGCGGAATAGACTGAAGAAA
TCAGATCCTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGTGAATCTAATCTCCCTGAGA
CTACAACAGAGCAGATTAATGCCAGTAATCCTATTACCCTGAGATTACAGTGGAACAGATTAAAA
TAAAGGATATTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAAGTCTAAACTCCCTGAAAT
TACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTGAACAATAGTGGAGCAGATCGAAA
ATGGTGAATCTTATCTCCAAAAGAA
Found at i:37460216 original size:219 final size:219
Alignment explanation
Indices: 37459467--37460177 Score: 944
Period size: 219 Copynumber: 3.3 Consensus size: 219
37459457 CCAAAAGATT
* *** * *
37459467 ACAGCGGAGCAAATTGAAGCCAGT-AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGC
1 ACAGCGGAGCAAATCGAAAATAGTGAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
* * * *
37459531 CAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAAATAAAGGATCTTATCTCTC-TAA
66 CAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTTAA
* *
37459595 TGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGATATTACAGTGGAATAGACTGAAGA
131 -GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGA
*
37459660 AATCCAGATCTTATCTCCCTAAGCA
195 ATTCCAGATCTTATCTCCCTAAGCA
* * ** * *
37459685 ATAGTGGAGCAAATCGAAAATTTTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
1 ACAGCGGAGCAAATCGAAAATAGTGAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
* * *
37459750 CAGTAATCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAA
66 CAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTTAA
* * * * *
37459815 ATTACAGTAGAGTAGATTGCATCAGGTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAA
131 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAA
37459880 TTCCAGATCTTATCTCCCTAAGCA
196 TTCCAGATCTTATCTCCCTAAGCA
* * * * * * *
37459904 ATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGAATACAGCAGAGCAGATTGAAGC
1 ACAGCGGAGCAAATCGAAAATAGTGAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
* *
37459969 CAGCAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAGAATAAAGGATCTTATCTCTCTTAA
66 CAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTTAA
*
37460034 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAA
131 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAA
* *
37460099 TTTCAGATCTTATCTCCCTGAG-A
196 TTCCAGATCTTATCTCCCTAAGCA
** * ** * * *
37460122 TTACAGCGGAGCTGATTGAAGCTAGT-AATCCTATCTCCCTAAGATTATAGTGGAGC
1 --ACAGCGGAGCAAATCGAAAATAGTGAATCCTATCTCCCTGAGATTACAGCGGAGC
37460178 GAATTAAAAT
Statistics
Matches: 430, Mismatches: 59, Indels: 7
0.87 0.12 0.01
Matches are distributed among these distances:
218 17 0.04
219 394 0.92
220 19 0.04
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (219 bp):
ACAGCGGAGCAAATCGAAAATAGTGAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
CAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTTAA
GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAA
TTCCAGATCTTATCTCCCTAAGCA
Found at i:37460414 original size:263 final size:263
Alignment explanation
Indices: 37460109--37461176 Score: 988
Period size: 263 Copynumber: 4.1 Consensus size: 263
37460099 TTTCAGATCT
* * * *
37460109 TATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTATAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
37460174 GAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
66 GAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * * *
37460239 ATCTCTCTGAGATTACAGTGGAATAGACTGAATAGTTCCAGATCTTGTCTCCCTGAGCAATAGTG
131 ATCTCCCTGAAATTACAGTGGAATAGACTGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGTG
* *
37460304 GAGCAGATCGAAGACAGTGAATCTTTTCTCCATAGGATTACAGCGGAGCAGATTGAAGCCAGTAA
196 GAGCAGATCGAAGATAGTGAATCTTATCTCCATAGGATTACAGCGGAGCAGATTGAAGCCAGTAA
37460369 TCC
261 TCC
* * * *
37460372 TATCTCCCTGGGATTACAGCGGAGCAGATTGAACCCAGTAATCCTATCTCTCTGAGATTACAGCG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
** * ** * * ** * * * *** *
37460437 GAGAAAATT-GAAGCAAGTAATCCTATAACCCTGATA-TTATAGTAGAGCAGATAAAAATAAAGG
66 GAGCGAATTAAAATAAAG-GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGAT-CGCAT-CAGG
* * * * * *
37460500 ATCTTATCTCTCT-AAAGTTACAGTAGAGTAGA-TCG--CA--T-CAGGTCTTATCTCCATGAG-
127 -TCTTATCTCCCTGAAA-TTACAGTGGAATAGACT-GAAGAGTTCCAGATCTTATCTCCCTGAGC
* * ** * * * * * * * *
37460557 ATTACAGCGGAATA-AACTGAATA-AATCCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-
189 A--ATAGTGGAGCAGATC-GAAGATAGT-GA-ATCTTATCTCCAT-AGGATTACAGCGGAGC-AG
** ****
37460617 ATAAAAAATGGTGAAT-C
247 ATTGAAGCCAGT-AATCC
* * * *
37460634 TAATCTCCCTGAGATTATAACAGAGCAGATT-AATGCTAGTAATCCTAT-TACCCTGAGATTACA
1 T-ATCTCCCTGAGATTACAGCGGAGCAGATTGAA-GCCAGTAATCCTATCT-CCCTGAGATTACA
** * * *
37460697 GTGGAATGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAAGT
63 GTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
* * * * * * *
37460762 CTTATTTCCCTGAAATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATA
128 CTTATCTCCCTGAAATTACAGTGGAATAGACTGAAGAGTTCCAGATCTTATCTCCCTGAGCAATA
* * * * *
37460827 GTGGAGCAGATCGAAGATGGTGAATCTTATCTCAAAAAGATTACAGCGGAGCAAATTGAAGCCAG
193 GTGGAGCAGATCGAAGATAGTGAATCTTATCTCCATAGGATTACAGCGGAGCAGATTGAAGCCAG
37460892 TAATCC
258 TAATCC
* * * *
37460898 TATCTCCCTGAGATTACAGCGGAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
* *
37460963 GAGCGGATGAAAATAAAGGATCTTATCTCTCT-AATGTTACAGTAGAGTAGATCGCATCAGGTCT
66 GAGCGAATTAAAATAAAGGATCTTATCTCTCTGAA-GTTACAGTAGAGTAGATCGCATCAGGTCT
* ** *
37461027 TATCTCCCTGATATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGT
130 TATCTCCCTGAAATTACAGTGGAATAGACTGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGT
* * * * *
37461092 GGAGCAAATCGAAAATTGTGAATCTTCTCTCCCT-GAGATTACAGCGGAGCAGATTGAAGCCAGT
195 GGAGCAGATCGAAGATAGTGAATCTTATCTCCATAG-GATTACAGCGGAGCAGATTGAAGCCAGT
37461156 AATCC
259 AATCC
* *
37461161 TATTTCCCTTAGATTA
1 TATCTCCCTGAGATTA
37461177 TAGTAGAACA
Statistics
Matches: 621, Mismatches: 146, Indels: 76
0.74 0.17 0.09
Matches are distributed among these distances:
260 23 0.04
261 25 0.04
262 45 0.07
263 434 0.70
264 44 0.07
265 23 0.04
266 27 0.04
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (263 bp):
TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
GAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
ATCTCCCTGAAATTACAGTGGAATAGACTGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGTG
GAGCAGATCGAAGATAGTGAATCTTATCTCCATAGGATTACAGCGGAGCAGATTGAAGCCAGTAA
TCC
Found at i:37460422 original size:219 final size:216
Alignment explanation
Indices: 37459401--37460434 Score: 719
Period size: 219 Copynumber: 4.7 Consensus size: 216
37459391 CGAAGAGTTC
* * * * * * ** *
37459401 CAGATCTTGTCTTCCTGAACAATAGTGGAGCAGATCGAAGATGGTGA-ATCTTATCTCCAAAAGA
1 CAGATCTTATCTCCCTGAGCAATAGTGGAACAGATCGAAGA-AGTCAGATCTTATCTCCCTAGGA
* * * *
37459465 TTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAG
65 TTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
* * *
37459530 CCAGTAATCCTATTTGC-CTGAGATTACAGTGGAGCGGAT-GAAAATAAAGGATCTTATCTCTCT
130 CCAGTAATCCTATCT-CTCTGAGATTACAGTAGAGCAGATCG--AATAAAGGATCTTATCTCTCT
* *
37459593 AATG-TTACAGTAGAGTAGA-TCGCAT
192 GA-GATTACAGTAGAATAGACT-GCAT
* * * * *
37459618 CAGGTCTTATCTCCCTGA-TATTACAGTGGAATAGA-CTGAAGAAATCCAGATCTTATCTCCCTA
1 CAGATCTTATCTCCCTGAGCA--ATAGTGGAACAGATC-GAAGAAGT-CAGATCTTATCTCCCT-
* * * * * ** ** * *
37459681 AGCA--ATAGTGGAGCAAATCGAAAATTTTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAGAT
61 AGGATTACAGCGGAGCAGATTGAAGCTAGT-AATCCTATCTCCCTGAGATTACAGCGGAGCAGAT
* * * * * * **
37459744 TGAAGCCAGTAATCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTC
125 TGAAGCCAGTAATCCTATCTCTCTGAGATTACAGTAGAGCAGA-TCGAATAAAGGATCTTATCTC
* * *
37459809 TCTGAAATTACAGTAGAGTAGATTGCAT
189 TCTGAGATTACAGTAGAATAGACTGCAT
* * * * * * *
37459837 CAGGTCTAAACTCCCTGAG-ATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAA
1 CAGATCTTATCTCCCTGAGCAAT--AGTGGAACAGATCGAAGAAGT-CAGATCTTATCTCCCT-A
* * * * ** * * * *
37459901 GCA--ATAGTGGAGCTA-ATCGAAAATGGTGAATCTTATCTCCCTGAGAATACAGCAGAGCAGAT
62 GGATTACAGCGGAGC-AGATTGAAGCTAGT-AATCCTATCTCCCTGAGATTACAGCGGAGCAGAT
* * * * * *
37459963 TGAAGCCAGCAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAGAATAAAGGATCTTATCTC
125 TGAAGCCAGTAATCCTATCTCTCTGAGATTACAGTAGAGCAGA-TCGAATAAAGGATCTTATCTC
* *
37460028 TCTTA-AGTTACAGTAGAGTAGA-TCGCAT
189 TCTGAGA-TTACAGTAGAATAGACT-GCAT
* * * *
37460056 CAGGTCTTATCTCCCTGAG-ATTATAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCT-G
1 CAGATCTTATCTCCCTGAGCA--ATAGTGGAACAGATCGAAGAA-GTCAGATCTTATCTCCCTAG
* * * *
37460119 AGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTATAGTGGAGC-GAATT
63 -GATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAG-ATT
* *** * * * * *
37460183 AAAATAAAG-GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCAT-CAGG-TCTTATCTC
126 -GAAGCCAGTAATCCTATCTCTCTGAGA-TTACAGTAGAGCAGATCGAATAAAGGATCTTATCTC
* *
37460244 TCTGAGATTACAGTGGAATAGACTGAATAGTT
189 TCTGAGATTACAGTAGAATAGACTG--CA--T
* * * * *
37460276 CCAGATCTTGTCTCCCTGAGCAATAGTGGAGCAGATCGAAGACAGTGA-ATCTTTTCTCCATAGG
1 -CAGATCTTATCTCCCTGAGCAATAGTGGAACAGATCGAAGA-AGTCAGATCTTATCTCCCTAGG
* *
37460340 ATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGGGATTACAGCGGAGCAGATTGAA
64 ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAA
*
37460405 CCCAGTAATCCTATCTCTCTGAGATTACAG
129 GCCAGTAATCCTATCTCTCTGAGATTACAG
37460435 CGGAGAAAAT
Statistics
Matches: 671, Mismatches: 104, Indels: 82
0.78 0.12 0.10
Matches are distributed among these distances:
216 28 0.04
217 23 0.03
218 47 0.07
219 502 0.75
220 51 0.08
221 19 0.03
222 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (216 bp):
CAGATCTTATCTCCCTGAGCAATAGTGGAACAGATCGAAGAAGTCAGATCTTATCTCCCTAGGAT
TACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
CAGTAATCCTATCTCTCTGAGATTACAGTAGAGCAGATCGAATAAAGGATCTTATCTCTCTGAGA
TTACAGTAGAATAGACTGCAT
Found at i:37460677 original size:307 final size:307
Alignment explanation
Indices: 37460109--37460697 Score: 803
Period size: 307 Copynumber: 1.9 Consensus size: 307
37460099 TTTCAGATCT
*** * ** *
37460109 TATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTATAGTG
1 TATCTCCCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATAACCCTAAGATTATAGTA
* *
37460174 GAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
66 GAGCGAATAAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * ** * *
37460239 ATCTCTCTGAGATTACAGTGGAATAGACTGAATAGTTCCAGATCTTGTCTCCCTGAGCAATAGTG
131 ATCTCTCTGAGATTACAGCGGAATAAACTGAATAAATCCAGATCTTATCTCCCTAAGCAATAGTG
** * ** * *
37460304 GAGCAGATCGAAGACAGTGAATCTTTTCTCCATAGGATTACAGCGGAGCAGATTGAAGCCAGTAA
196 GAGCAGATAAAAAACAGTGAATCTAATCTCCATAGGATTACAACAGAGCAGATTGAAGCCAGTAA
*
37460369 TCCTATCT-CCCTGGGATTACAGCGGAGCAGATTGAACCCAGTAATCC
261 TCCTAT-TACCCTGAGATTACAGCGGAGCAGATTGAACCCAGTAATCC
* * *
37460416 TATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATAACCCTGATATTATAGTA
1 TATCTCCCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATAACCCTAAGATTATAGTA
37460481 GAGC-AGATAAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
66 GAGCGA-ATAAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
37460545 TATCTC-CATGAGATTACAGCGGAATAAACTGAATAAATCCAGATCTTATCTCCCTAAGCAATAG
130 TATCTCTC-TGAGATTACAGCGGAATAAACTGAATAAATCCAGATCTTATCTCCCTAAGCAATAG
** * * *
37460609 TGGAGCTA-ATAAAAAATGGTGAATCTAATCTCCCT-GAGATTATAACAGAGCAGATT-AATGCT
194 TGGAGC-AGATAAAAAACAGTGAATCTAATCTCCATAG-GATTACAACAGAGCAGATTGAA-GCC
37460671 AGTAATCCTATTACCCTGAGATTACAG
256 AGTAATCCTATTACCCTGAGATTACAG
37460698 TGGAATGGAT
Statistics
Matches: 245, Mismatches: 31, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
306 6 0.02
307 238 0.97
308 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (307 bp):
TATCTCCCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATAACCCTAAGATTATAGTA
GAGCGAATAAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
ATCTCTCTGAGATTACAGCGGAATAAACTGAATAAATCCAGATCTTATCTCCCTAAGCAATAGTG
GAGCAGATAAAAAACAGTGAATCTAATCTCCATAGGATTACAACAGAGCAGATTGAAGCCAGTAA
TCCTATTACCCTGAGATTACAGCGGAGCAGATTGAACCCAGTAATCC
Found at i:37460718 original size:219 final size:219
Alignment explanation
Indices: 37460426--37460916 Score: 549
Period size: 219 Copynumber: 2.2 Consensus size: 219
37460416 TATCTCTCTG
* * * * * * * *
37460426 AGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATAACCCTGATATTATAGTAGAGCAGATAA
1 AGATTACAACAGAGCAAATTGAAGCCAGTAATCCTATTACCCTGAGATTACAGTAGAACAGATAA
* *
37460491 AAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGA
66 AAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTCCATGA
* * *
37460556 GATTACAGCGGAATAAACTGAATAAATCCAGATCTTATCTCCCT-AAGCAATAGTGGAGCTA-AT
131 AATTACAGCGGAATAAACCGAAGAAATCCAGATCTTATCTCCCTGAA-CAATAGTGGAGC-AGAT
****
37460619 AAAAAATGGTGAATCTAATCTCCCTG
194 AAAAAATGGTGAATCTAATCTCAAAA
* * * * ** *
37460645 AGATTATAACAGAGCAGATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAATGGATT
1 AGATTACAACAGAGCAAATTGAA-GCCAGTAATCCTATTACCCTGAGATTACAGTAGAACAGATA
* * *
37460709 AAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATTTCCCTG
65 AAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTCCATG
* * ** ** * * *
37460774 AAATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAACAATAGTGGAGCAGATC
130 AAATTACAGCGGAATAAACCGAAGAAATCCAGATCTTATCTCCCTGAACAATAGTGGAGCAGATA
* * *
37460839 GAAGATGGTGAATCTTATCTCAAAA
195 AAAAATGGTGAATCTAATCTCAAAA
* *
37460864 AGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCT-CCCTGAGATTACAG
1 AGATTACAACAGAGCAAATTGAAGCCAGTAATCCTAT-TACCCTGAGATTACAG
37460917 CGGAGCAAAT
Statistics
Matches: 224, Mismatches: 43, Indels: 10
0.81 0.16 0.04
Matches are distributed among these distances:
218 3 0.01
219 216 0.96
220 5 0.02
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.27
Consensus pattern (219 bp):
AGATTACAACAGAGCAAATTGAAGCCAGTAATCCTATTACCCTGAGATTACAGTAGAACAGATAA
AAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTCCATGA
AATTACAGCGGAATAAACCGAAGAAATCCAGATCTTATCTCCCTGAACAATAGTGGAGCAGATAA
AAAATGGTGAATCTAATCTCAAAA
Found at i:37460877 original size:482 final size:481
Alignment explanation
Indices: 37460383--37461397 Score: 1444
Period size: 482 Copynumber: 2.1 Consensus size: 481
37460373 ATCTCCCTGG
* *
37460383 GATTACAGCGGAGCAGATTGAACCCAGTAATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGA
1 GATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGAAAATTGA
* *
37460448 AGCAAGTAATCCTATAACCCTGATATTATAGTAGAGCAGATAAAAATAAAGGATCTTATCTCTCT
66 AGCAAGTAATCCTATAACCCTGAGATTACAGTAGAGCAGATAAAAATAAAGGATCTTATCTCTCT
37460513 AAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTACAGCGGAATAAACTGAA
131 AAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTACAGCGGAATAAACTGAA
* *
37460578 TAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTAATCTCCC
196 GAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGTGAATCTAATCTCCC
* * * **
37460643 TGAGATTATAACAGAGCAGATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAATGGA
261 TGAGATTACAACAGAGCAGATTGAA-GCCAGTAATCCTATTACCCTGAGATTACAGTAGAACAGA
* **
37460707 TTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATTTCCC
325 TTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAAGTCTAAACTCCC
* * * *
37460772 TGAAATTACT-GTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAA-CAATAGTGGAGC-
390 TGAAATT-CTAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT-AAGCAATAGTGGAGCT
* *
37460834 AGATCGAAGATGGTGAATCTTATCTCAAAAA
453 A-ATCGAAAACGGTGAATCTTATCTC-AAAA
* * *
37460865 GATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTA
1 GATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGAAAATTGA
* *** * * *
37460930 AGCCAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAAATAAAGGATCTTATCTCTCT
66 AGCAAGTAATCCTATAACCCTGAGATTACAGTAGAGCAGATAAAAATAAAGGATCTTATCTCTCT
* * * * *
37460995 AATGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGATATTACAGTGGAATAGACTGAA
131 AAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTACAGCGGAATAAACTGAA
** * **
37461060 GAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAAATTGTGAATCTTCTCTCCC
196 GAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGTGAATCTAATCTCCC
* * * * *
37461125 TGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTAGATTATAGTAGAACAGAT
261 TGAGATTACAACAGAGCAGATTGAAGCCAGTAATCCTATTACCCTGAGATTACAGTAGAACAGAT
* * * * *
37461190 TAAAATAAAGGATCTTATCTCTCTTAATTTACAGTAGAGTAGATTGCATCAGGTCTAAACTCCCT
326 TAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAAGTCTAAACTCCCT
*
37461255 GAGATTCTAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAAT
391 GAAATTCTAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAAT
***
37461320 CGAAAACGGTGAATCTTATCTCCTGA
456 CGAAAACGGTGAATCTTATCTCAAAA
* * *
37461346 GATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAG
1 GATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAG
37461398 TGGAACGGAT
Statistics
Matches: 471, Mismatches: 58, Indels: 9
0.88 0.11 0.02
Matches are distributed among these distances:
481 53 0.11
482 415 0.88
483 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (481 bp):
GATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGAAAATTGA
AGCAAGTAATCCTATAACCCTGAGATTACAGTAGAGCAGATAAAAATAAAGGATCTTATCTCTCT
AAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTACAGCGGAATAAACTGAA
GAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATAAAAAATGGTGAATCTAATCTCCC
TGAGATTACAACAGAGCAGATTGAAGCCAGTAATCCTATTACCCTGAGATTACAGTAGAACAGAT
TAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAAGTCTAAACTCCCT
GAAATTCTAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAAT
CGAAAACGGTGAATCTTATCTCAAAA
Found at i:37461162 original size:219 final size:220
Alignment explanation
Indices: 37460893--37461518 Score: 974
Period size: 219 Copynumber: 2.9 Consensus size: 220
37460883 TGAAGCCAGT
* * * *
37460893 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGCCAGTAATCCTATTTGCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* *
37460958 CAGTGGAGCGGATGAAAATAAAGGATCTTATCTCTC-TAATGTTACAGTAGAGTAGATCGCATCA
66 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTTAATGTTACAGTAGAGTAGATCGCATCA
* * *
37461022 GGTCTTATCTCCCTGATATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCA
131 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCA
**
37461087 ATAGTGGAGCAAATCGAAAATTGTG
196 ATAGTGGAGCAAATCGAAAACGGTG
* *
37461112 AATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * * *
37461177 TAGTAGAACAGATTAAAATAAAGGATCTTATCTCTCTTAAT-TTACAGTAGAGTAGATTGCATCA
66 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTTAATGTTACAGTAGAGTAGATCGCATCA
* *
37461241 GGTCTAAACTCCCTGAGATT-CTAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGC
131 GGTCTTATCTCCCTGAGATTAC-AGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGC
*
37461305 AATAGTGGAGCTAATCGAAAACGGTG
195 AATAGTGGAGCAAATCGAAAACGGTG
* *
37461331 AATCTTATCT-CCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
*
37461395 CAGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAA-GTTACAGTAGAGTAGATCGCATCA
66 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTTAATGTTACAGTAGAGTAGATCGCATCA
* * *
37461459 GGTCTTATCTCCTTGAGATTATAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCT
131 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT
37461519 GAGATTACAG
Statistics
Matches: 369, Mismatches: 34, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
218 164 0.44
219 201 0.54
220 4 0.01
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.29
Consensus pattern (220 bp):
AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTTAATGTTACAGTAGAGTAGATCGCATCA
GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCA
ATAGTGGAGCAAATCGAAAACGGTG
Found at i:37461485 original size:85 final size:85
Alignment explanation
Indices: 37461383--37461662 Score: 242
Period size: 85 Copynumber: 3.2 Consensus size: 85
37461373 CAATCCTATT
37461383 TCCCTGAGATTACAGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGT
1 TCCCTGAGATTACAGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGT
37461448 AGATCGCATCAGGTCTTATC
66 AGATCGCATCAGGTCTTATC
* * ** ** ** * * **
37461468 TCCTTGAGATTATAGTGGAATAGACCGAAGAATTTCA-GATCTTATCTC-CCTGAGATTACAGCG
1 TCCCTGAGATTACAGTGGAACGGA--TTAGAA-TAAAGGATCTTATCTCTCTTAAG-TTACAGTA
* * * * *
37461531 GAGCT-GATTGAAGCTAGTAATCCTATC
62 GAG-TAGATCGCATC-AG--GTCTTATC
* * * * * * *
37461558 TCCCTAAGATTACAGTGGAGCGAATTAAAATAAAGGATATTACCTCTCTGAAGTTACAGTAGAGT
1 TCCCTGAGATTACAGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGT
37461623 AGATCGCATCAGGTCTTATC
66 AGATCGCATCAGGTCTTATC
*
37461643 TCCCTCAGATTACAGTGGAA
1 TCCCTGAGATTACAGTGGAA
37461663 TAGACCGAAT
Statistics
Matches: 141, Mismatches: 43, Indels: 22
0.68 0.21 0.11
Matches are distributed among these distances:
85 44 0.31
86 4 0.03
87 35 0.25
88 32 0.23
89 3 0.02
90 23 0.16
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (85 bp):
TCCCTGAGATTACAGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGT
AGATCGCATCAGGTCTTATC
Found at i:37461542 original size:175 final size:175
Alignment explanation
Indices: 37461332--37461696 Score: 552
Period size: 175 Copynumber: 2.1 Consensus size: 175
37461322 AAAACGGTGA
* *
37461332 ATCTTATCT-CCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
* * * * *
37461396 AGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGAATTAAAATAAAGGATATTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* * * *
37461461 TCTTATCTCCTTGAGATTATAGTGGAATAGACCGAAGAATTTCAG
131 TCTTATCTCCCTCAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * *
37461506 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
*
37461571 AGTGGAGCGAATTAAAATAAAGGATATTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGAATTAAAATAAAGGATATTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* *
37461636 TCTTATCTCCCTCAGATTACAGTGGAATAGACCGAATAGTTCCAG
131 TCTTATCTCCCTCAGATTACAGTGGAATAGACCGAAGAATTCCAG
*
37461681 ATCTTGTCTCCCTGAG
1 ATCTTATCTCCCTGAG
37461697 CAATAGTGGA
Statistics
Matches: 171, Mismatches: 19, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
174 9 0.05
175 162 0.95
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (175 bp):
ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
AGTGGAACGAATTAAAATAAAGGATATTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTCAGATTACAGTGGAATAGACCGAAGAATTCCAG
Found at i:37461560 original size:218 final size:219
Alignment explanation
Indices: 37460869--37461578 Score: 946
Period size: 219 Copynumber: 3.3 Consensus size: 219
37460859 CAAAAAGATT
* * * * *
37460869 ACAGCGGAGCAAATTGAAGCCAGT-AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGC
1 ACAGCGGAGCAAATCGAAACTAGTGAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
* * *
37460933 CAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAAATAAAGGATCTTATCTCTC-TAA
66 CAGTAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTTAA
* * *
37460997 TGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGATATTACAGTGGAATAGACTGAAGA
131 -GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGA
*
37461062 AATCCAGATCTTATCTCCCTAAGCA
195 ATTCCAGATCTTATCTCCCTAAGCA
* * * * * *
37461087 ATAGTGGAGCAAATCGAAAATTGTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
1 ACAGCGGAGCAAATCGAAACTAGTGAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
* * * *
37461152 CAGTAATCCTATTTCCCTTAGATTATAGTAGAACAGATTAAAATAAAGGATCTTATCTCTCTTAA
66 CAGTAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTTAA
* * * * *
37461217 TTTACAGTAGAGTAGATTGCATCAGGTCTAAACTCCCTGAGATTCTAGTGGAATAGACCGAAGAA
131 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAA
37461282 TTCCAGATCTTATCTCCCTAAGCA
196 TTCCAGATCTTATCTCCCTAAGCA
* * * * * *
37461306 ATAGTGGAGCTAATCGAAAAC-GGTGAATCTTATCT-CCTGAGATTACAGCAGAGCAGATTGAAG
1 ACAGCGGAGCAAATCG-AAACTAGTGAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
* *
37461369 CCAGCAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTA
65 CCAGTAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTTA
*
37461434 AGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCTTGAGATTATAGTGGAATAGACCGAAGA
130 AGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGA
* *
37461499 ATTTCAGATCTTATCTCCCTGAG-A
195 ATTCCAGATCTTATCTCCCTAAGCA
** * * * *
37461523 TTACAGCGGAGCTGATTGAAGCTAGT-AATCCTATCTCCCTAAGATTACAGTGGAGC
1 --ACAGCGGAGCAAATCGAAACTAGTGAATCCTATCTCCCTGAGATTACAGCGGAGC
37461579 GAATTAAAAT
Statistics
Matches: 429, Mismatches: 56, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
217 1 0.00
218 195 0.45
219 227 0.53
220 6 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (219 bp):
ACAGCGGAGCAAATCGAAACTAGTGAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
CAGTAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTTAA
GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAA
TTCCAGATCTTATCTCCCTAAGCA
Found at i:37461735 original size:175 final size:173
Alignment explanation
Indices: 37461332--37461753 Score: 551
Period size: 175 Copynumber: 2.4 Consensus size: 173
37461322 AAAACGGTGA
* * * *
37461332 ATCTTATCT-CCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGA-TACAGCGGAGCAGATTGAAG-CAGTAATCCTATCTCCCTAAGATTAC
* * * * * *
37461396 AGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGG
64 AGTGGAGCGAATTAAAATAAAGGATATTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* * * *
37461461 TCTTATCTCCTTGAGATTATAGTGGAATAGACCGAAGAATTTCAG
129 TCTTATCTCCCTCAGATTACAGTGGAATAGACCGAAGAATTCCAG
*
37461506 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGA-TACAGCGGAGCAGATTGAAGC-AGTAATCCTATCTCCCTAAGATTAC
37461571 AGTGGAGCGAATTAAAATAAAGGATATTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
64 AGTGGAGCGAATTAAAATAAAGGATATTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* *
37461636 TCTTATCTCCCTCAGATTACAGTGGAATAGACCGAATAGTTCCAG
129 TCTTATCTCCCTCAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * * * *
37461681 ATCTTGTCTCCCTGAGCA-ATAGTGGAGCAGATTGAAGACGGTGAATCTTATCTCCATAAGATTA
1 ATCTTATCTCCCTGAG-ATACAGCGGAGCAGATTGAAG-CAGT-AATCCTATCTCCCTAAGATTA
*
37461745 CAGCGGAGC
63 CAGTGGAGC
37461754 AGATTGAAGC
Statistics
Matches: 218, Mismatches: 25, Indels: 9
0.87 0.10 0.04
Matches are distributed among these distances:
174 28 0.13
175 189 0.87
176 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (173 bp):
ATCTTATCTCCCTGAGATACAGCGGAGCAGATTGAAGCAGTAATCCTATCTCCCTAAGATTACAG
TGGAGCGAATTAAAATAAAGGATATTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
TTATCTCCCTCAGATTACAGTGGAATAGACCGAAGAATTCCAG
Found at i:37461840 original size:263 final size:262
Alignment explanation
Indices: 37461510--37462593 Score: 966
Period size: 263 Copynumber: 4.1 Consensus size: 262
37461500 TTTCAGATCT
* * * *
37461510 TATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
37461575 GAGCGAATTAAAATAAAGGATATTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
66 GAGCGAATTAAAATAAAGGATATTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* *
37461640 ATCTCCCTCAGATTACAGTGGAATAGACCGAATAGTTCCAGATCTTGTCTCCCTGAGCAATAGTG
131 ATCTCCCT-AGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGTG
*
37461705 GAGCAGATTGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
195 GAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
37461770 TCC
260 TCC
* *
37461773 TATCTCCCTGAGATTACAGCGGAGCAGATTAAACCCAGTAAACCTATCTCCCTGAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
** * ** * ** * * * * ** * *
37461838 GAGAAAATT-GAAGCAAGTA-ATCCTATTTCCCT-AATATTATAGTGGAGCGGAT-GAAAATAAA
66 GAGCGAATTAAAATAAAGGATAT--TACCTCTCTGAA-GTTACAGTAGAGTAGATCG--CAT-CA
* * * ** * * * * *
37461899 GGATCTTATCTCACTAAAGTTACAGTAGTGTAGATCG--CA--T-CAGGTCTTATCTCCATGCG-
125 GG-TCTTATCTCCCTAGA-TTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGC
* * ** * * ** * * * *
37461958 ATTACAGCGGAATACA-CTGAATA-AATCCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-
188 A--ATAGTGGAGCAGATC-GAAGACGGT-GA-ATCTTATCTCCATAAG-ATTACAGCGGAGC-AG
* ****
37462018 A-TAAAAATGGTGAAT-C
246 ATTGAAGCCAGT-AATCC
* * * * *
37462034 TGATCTCCCTGAGATTATAGCAGAGTAGATTAATGCTAGTAATCCTAT-TACCCTGAGATTACAG
1 T-ATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCCAGTAATCCTATCT-CCCTGAGATTACAG
* * *
37462098 TGGAACGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
64 TGGAGCGAATTAAAATAAAGGATATTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
* * * *
37462163 TTATCTCCCTAAGATTACTGTGGAATAAACCGAAGAGTTCCAGATCTTGTCTTCCTGAGCAATAG
129 TTATCTCCCT-AGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAG
* * *
37462228 TGGAGCAGATCGACGACGGTGAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGT
193 TGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
*
37462293 AATTC
258 AATCC
* * * *
37462298 TATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATTTGCCTGAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
* * * *
37462363 GAGCGGATGAAAATAAAGGATCTTATCC-CTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
66 GAGCGAATTAAAATAAAGGATATTA-CCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
* ** * *
37462427 TATCTCCCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCTCTAAGCAATAGT
130 TATCTCCCT-AGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGT
* ** * * * *
37462492 GGAGCTA-ATCGAAAATTGTGAATCTTCTCTCCTTGAGATTACAGCGAAGCAGATTGAAGCCAGT
194 GGAGC-AGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
*
37462556 AGTCC
258 AATCC
* ** * * *
37462561 TATTTCTTTTAGATTACAGTGGAACAGATTAAA
1 TATCTCCCTGAGATTACAGCGGAGCAGATTAAA
37462594 ATAAAGGATC
Statistics
Matches: 631, Mismatches: 151, Indels: 78
0.73 0.18 0.09
Matches are distributed among these distances:
259 23 0.04
260 6 0.01
261 30 0.05
262 129 0.20
263 380 0.60
264 32 0.05
265 6 0.01
266 25 0.04
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (262 bp):
TATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
GAGCGAATTAAAATAAAGGATATTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
ATCTCCCTAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGTGG
AGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAAT
CC
Found at i:37462115 original size:218 final size:218
Alignment explanation
Indices: 37461818--37462316 Score: 563
Period size: 218 Copynumber: 2.3 Consensus size: 218
37461808 CAGTAAACCT
** * * *
37461818 ATCTCCCTGAGATTACAGTGGAGAAAATTGAAGCAAGTAATCCTATTTCCCTAATATTATAGTGG
1 ATCTCCCTGAGATTACAGCAGAGAAAATTGAAGCAAGTAATCCTATTACCCTAAGATTACAGTGG
* * *
37461883 AGCGGATGAAAATAAAGGATCTTATCTCACTAAAGTTACAGTAGTGTAGATCGCATCAGGTCTTA
66 AACGGATGAAAATAAAGGATATTATCTCACTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA
** * * *
37461948 TCTCCATGCGATTACAGCGGAATACACTGAATAAATCCAGATCTTATCTCCCTAAGCAATAGTGG
131 TCTCCATAAGATTACAGCGGAATAAACCGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGG
37462013 AGCTAATAAAAATGGTGAATCTG
196 AGCTAATAAAAATGGTGAATCTG
* * * * *
37462036 ATCTCCCTGAGATTATAGCAGAGTAGATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTG
1 ATCTCCCTGAGATTACAGCAGAGAAAATTGAA-GCAAGTAATCCTATTACCCTAAGATTACAGTG
* * *
37462100 GAACGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
65 GAACGGATGAAAATAAAGGATATTATCTCACTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * * ** * * *
37462165 ATCTCCCTAAGATTACTGTGGAATAAACCGAAGAGTTCCAGATCTTGTCTTCCTGAGCAATAGTG
130 ATCTCCATAAGATTACAGCGGAATAAACCGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTG
* ** * *
37462230 GAGC-AGATCGACGACGGTGAATCTT
195 GAGCTA-AT-AAAAATGGTGAATCTG
*** * * * * *
37462255 ATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATTCTATCT-CCCTGAGATTACAG
1 ATCTCCCTGAGATTACAGCAGAGAAAATTGAAGCAAGTAATCCTAT-TACCCTAAGATTACAG
37462317 CGGAGCAAAT
Statistics
Matches: 233, Mismatches: 43, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
217 3 0.01
218 168 0.72
219 59 0.25
220 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (218 bp):
ATCTCCCTGAGATTACAGCAGAGAAAATTGAAGCAAGTAATCCTATTACCCTAAGATTACAGTGG
AACGGATGAAAATAAAGGATATTATCTCACTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA
TCTCCATAAGATTACAGCGGAATAAACCGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGG
AGCTAATAAAAATGGTGAATCTG
Found at i:37462942 original size:175 final size:175
Alignment explanation
Indices: 37462732--37463093 Score: 564
Period size: 175 Copynumber: 2.1 Consensus size: 175
37462722 AAAATGGTGA
* * *
37462732 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTTAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAACTAGTAATCCTATTTCCCTGAGACTAC
* *
37462797 AGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGTAACAGTAGAGTAGATTGCATC-AG
66 AGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTAACAATAGAGTAGATTGCATCTA-
*
37462861 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCAG
130 GTCTTATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATTTCAG
* * *
37462907 ATCTTATGTCCCTGAGATTACAGCGGAGTAGATTGAAATTAGTAATCCTATTTCCCTGAGACTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAACTAGTAATCCTATTTCCCTGAGACTAC
* *
37462972 AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAATAGAGTAGATTGCATCTAG
66 AGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTAACAATAGAGTAGATTGCATCTAG
* * * *
37463037 TCTTATCTGCCTAAGATTACAGTGGAATAGACCGAATAATTCCAT
131 TCTTATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATTTCAG
*
37463082 ATCATATCTCCC
1 ATCTTATCTCCC
37463094 GAAGAAATAG
Statistics
Matches: 169, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
175 168 0.99
176 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (175 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAACTAGTAATCCTATTTCCCTGAGACTAC
AGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTAACAATAGAGTAGATTGCATCTAG
TCTTATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATTTCAG
Found at i:37463150 original size:175 final size:175
Alignment explanation
Indices: 37462736--37463152 Score: 527
Period size: 175 Copynumber: 2.4 Consensus size: 175
37462726 TGGTGAATCT
* * * ** *
37462736 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTTAGATTACAGTG
1 TATCTCCCTGAGATAACAGCGGAGTAGATCGAAAATAGTAATCCTATTTCCCTAAGATTACAGTG
* *
37462801 GAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGTAACAGTAGAGTAGATTGCATCAGGTCTT
66 GAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTAACAATAGAGTAGATTGCATCAGGTCTT
* * *
37462866 ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCT
131 ATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATTCCAGATCA
* * * * * *
37462911 TATGTCCCTGAGATTACAGCGGAGTAGATTGAAATTAGTAATCCTATTTCCCTGAGACTACAGTG
1 TATCTCCCTGAGATAACAGCGGAGTAGATCGAAAATAGTAATCCTATTTCCCTAAGATTACAGTG
* *
37462976 GAACGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAATAGAGTAGATTGCATCTA-GTCT
66 GAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTAACAATAGAGTAGATTGCATC-AGGTCT
* * *
37463040 TATCTGCCTAAGATTACAGTGGAATAGACCGAATAATTCCATATCA
130 TATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATTCCAGATCA
* * * * *
37463086 TATCTCCC-GAAGA-AATAGTGGAGCTA-ATCGAAAATGGTGAATCTTATCTCCCTAAGATTACA
1 TATCTCCCTG-AGATAACAGCGGAG-TAGATCGAAAATAGT-AATCCTATTTCCCTAAGATTACA
37463148 GTGGA
63 GTGGA
37463153 GCAAATTGAA
Statistics
Matches: 211, Mismatches: 27, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
174 17 0.08
175 193 0.91
176 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (175 bp):
TATCTCCCTGAGATAACAGCGGAGTAGATCGAAAATAGTAATCCTATTTCCCTAAGATTACAGTG
GAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTAACAATAGAGTAGATTGCATCAGGTCTT
ATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATTCCAGATCA
Found at i:37463177 original size:394 final size:394
Alignment explanation
Indices: 37462513--37463586 Score: 1537
Period size: 394 Copynumber: 2.7 Consensus size: 394
37462503 AAAATTGTGA
* * * * * ** *
37462513 ATCTTCTCTCCTTGAGATTACAGCGAAGCAGATTGAAGCCAGTAGTCCTATTTCTTTTAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTAC
*
37462578 AGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* * * ** * *
37462643 TCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTATCTAAGCAAT
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCGAAGAAAT
* *
37462708 AGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTA
196 AGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTAAGATTACAGTGGAGCAGATTGAAGCTA
* * *
37462773 GTAATCCTATTTCCCTTAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGT
261 GTAATCCTATTTCCCTTAGATTACAGTGGAACAGATAAAAATAAAGAATCATATCTCTCTGAAGT
*
37462838 AACAGTAGAGTAGATTGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATT
326 AACAGTAGAGTAGATTGCATCAGGTCTTATCACCCTGAGATTACAGTGGAATAGACCGAAGAATT
37462903 TCAG
391 TCAG
* *** * *
37462907 ATCTTATGTCCCTGAGATTACAGCGGAGTAGATTGAAATTAGTAATCCTATTTCCCTGAGACTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTAC
* * *
37462972 AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAATAGAGTAGATTGCATCTA-
66 AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC-AG
* * * * *
37463036 GTCTTATCTGCCTAAGATTACAGTGGAATAGACCGAATAATTCCATATCATATCTCCCGAAGAAA
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCGAAGAAA
* * *
37463101 TAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTAAGATTACAGTGGAGCAAATTGAAACC
195 TAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTAAGATTACAGTGGAGCAGATTGAAGCT
* *
37463166 AGTAATCCTATTTCCCTGAGATTACAGTGGAACGGATAAAAATAAAGAATCATATCTCTCTGAAG
260 AGTAATCCTATTTCCCTTAGATTACAGTGGAACAGATAAAAATAAAGAATCATATCTCTCTGAAG
* *
37463231 TTACAGTAGAGTAGATTGCATCAGGTCTTATCACCCTGAGATTATAGTGGAATAGACCGAAGAAT
325 TAACAGTAGAGTAGATTGCATCAGGTCTTATCACCCTGAGATTACAGTGGAATAGACCGAAGAAT
37463296 TTCAG
390 TTCAG
* * * *
37463301 ATCTTATCTCCCTAAGATTATAGCGGAGCT-GATTGAAGCGAGTAATCCTATCTCCCTAAGATTA
1 ATCTTATCTCCCTGAGATTACAGCGGAG-TAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTA
* * *
37463365 CAGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATGGCATCAG
65 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* * * *
37463430 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTACCAGATCTTGTCTCCCTG-AGTA
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCC-GAAGAA
* * * *
37463494 ATAGTGGAGC-AGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGTAGAGCAGATTGAAG
194 ATAGTGGAGCTA-ATCGAAAATGGTGAATCTTATCTCCCTAAGATTACAGTGGAGCAGATTGAAG
*
37463558 CTAGTAATCCTATCT-CCTTAAGATTACAG
258 CTAGTAATCCTATTTCCCTT-AGATTACAG
37463587 CAGAGCAGAT
Statistics
Matches: 600, Mismatches: 74, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
393 5 0.01
394 592 0.99
395 3 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (394 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTAC
AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCGAAGAAAT
AGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTAAGATTACAGTGGAGCAGATTGAAGCTA
GTAATCCTATTTCCCTTAGATTACAGTGGAACAGATAAAAATAAAGAATCATATCTCTCTGAAGT
AACAGTAGAGTAGATTGCATCAGGTCTTATCACCCTGAGATTACAGTGGAATAGACCGAAGAATT
TCAG
Found at i:37463417 original size:175 final size:175
Alignment explanation
Indices: 37463126--37463548 Score: 580
Period size: 175 Copynumber: 2.4 Consensus size: 175
37463116 AAAATGGTGA
* * * * * *
37463126 ATCTTATCTCCCTAAGATTACAGTGGAGCAAATTGAAACCAGTAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTAAGATTATAGTGGAGCAGATTGAAGCGAGTAATCCTATCTCCCTAAGATTAC
* * *
37463191 AGTGGAACGGATAAAAATAAAGAATCATATCTCTCTGAAGTTACAGTAGAGTAGATTGCATCAGG
66 AGTGGAGCGAATAAAAATAAAGAATCATATCTCTCTGAAGTTACAGTAGAGTAGATGGCATCAGG
* **
37463256 TCTTATCACCCTGAGATTATAGTGGAATAGACCGAAGAATTTCAG
131 TCTTATCACCCTGAGATTACAGTGGAATAGACCGAAGAATACCAG
* *
37463301 ATCTTATCTCCCTAAGATTATAGCGGAGCTGATTGAAGCGAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTAAGATTATAGTGGAGCAGATTGAAGCGAGTAATCCTATCTCCCTAAGATTAC
* * *
37463366 AGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATGGCATCAGG
66 AGTGGAGCGAATAAAAATAAAGAATCATATCTCTCTGAAGTTACAGTAGAGTAGATGGCATCAGG
* *
37463431 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTACCAG
131 TCTTATCACCCTGAGATTACAGTGGAATAGACCGAAGAATACCAG
* * * * * *
37463476 ATCTTGTCTCCCTGAG-TAATAGTGGAGCAGATCGAAGACG-GTGAATCTTATCTCCATAAGATT
1 ATCTTATCTCCCTAAGATTATAGTGGAGCAGATTGAAG-CGAGT-AATCCTATCTCCCTAAGATT
*
37463539 ACAGTAGAGC
64 ACAGTGGAGC
37463549 AGATTGAAGC
Statistics
Matches: 218, Mismatches: 28, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
174 19 0.09
175 199 0.91
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (175 bp):
ATCTTATCTCCCTAAGATTATAGTGGAGCAGATTGAAGCGAGTAATCCTATCTCCCTAAGATTAC
AGTGGAGCGAATAAAAATAAAGAATCATATCTCTCTGAAGTTACAGTAGAGTAGATGGCATCAGG
TCTTATCACCCTGAGATTACAGTGGAATAGACCGAAGAATACCAG
Found at i:37463453 original size:85 final size:85
Alignment explanation
Indices: 37463178--37463457 Score: 260
Period size: 85 Copynumber: 3.2 Consensus size: 85
37463168 TAATCCTATT
* * *
37463178 TCCCTGAGATTACAGTGGAACGGATAAAAATAAAGAATCATATCTCTCTGAAGTTACAGTAGAGT
1 TCCCTGAGATTACAGTGGAACGAATAAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
37463243 AGATTGCATCAGGTCTTATC
66 AGATTGCATCAGGTCTTATC
* * * ** * ** * * **
37463263 ACCCTGAGATTATAGTGGAATAGACCGAAGAATTTCA-GATCTTATCTCCCT-AAGATTATAGCG
1 TCCCTGAGATTACAGTGGAA-CGA-ATAA-AAATAAAGGATCTTATCTCTCTGAAG-TTACAGTA
* * * *
37463326 GAGCT-GATTGAAGCGAGTAATCCTATC
62 GAG-TAGATTGCATC-AG--GTCTTATC
* * *
37463353 TCCCTAAGATTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
1 TCCCTGAGATTACAGTGGAACGAATAAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
*
37463418 AGATGGCATCAGGTCTTATC
66 AGATTGCATCAGGTCTTATC
37463438 TCCCTGAGATTACAGTGGAA
1 TCCCTGAGATTACAGTGGAA
37463458 TAGACCGAAG
Statistics
Matches: 143, Mismatches: 41, Indels: 22
0.69 0.20 0.11
Matches are distributed among these distances:
85 42 0.29
86 4 0.03
87 35 0.24
88 35 0.24
89 5 0.03
90 22 0.15
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (85 bp):
TCCCTGAGATTACAGTGGAACGAATAAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
AGATTGCATCAGGTCTTATC
Found at i:37464353 original size:307 final size:307
Alignment explanation
Indices: 37463825--37464429 Score: 815
Period size: 307 Copynumber: 2.0 Consensus size: 307
37463815 AAAAATGGTG
* * * *
37463825 AATCTGATCTCCCTGAGATTATAGCGGAGCAGATTAATGCTAGTAATCCTATTACCCTGAGATTA
1 AATCTGATCTCCCTGAGAGTACAGCGGAGCAAATTAATGCCAGTAATCCTATTACCCTGAGATTA
* *
37463890 CAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAACAGATGAAAATAAAGGAACTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* ** * * * * *
37463955 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCTAGATCTTGTCTCCCTGAGTAA
131 GTCTTATCTCCCTGAGATTACAATGGAATAGACCGAAGAAATCCAGATATTATCTCCCTAAGAAA
** * * *
37464020 TAGTGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCC
196 TAGTGGAGCAGATAAAAAACGGTGAATCTGATCTCCATAAGATTACAGCGGAGCAGATTAAAGCC
*
37464085 AGTAATCCTATCT-CCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
261 AGTAATCCTAT-TACCCTGAGATTACAGTGGAACAGATTGAAGCTAGT
* * * *
37464132 AATCTTATCTCCCTGAGAGTACAGCGGAGTAAATTGAA-GCCAGTAATCCTATTTCCCTGATATT
1 AATCTGATCTCCCTGAGAGTACAGCGGAGCAAATT-AATGCCAGTAATCCTATTACCCTGAGATT
* * *
37464196 ACAGTGGAGCGGATGAAAATAAAGGAACTTATCTCTCT-ATAGTTACAGTACTA-TAGATCGCAT
65 ACAGTGGAACAGATGAAAATAAAGGAACTTATCTCTCTGA-AGTTACAGTA-GAGTAGATCGCAT
* *
37464259 CAGGTCTTATCTCCCTGAGATTACAATGGAATAGACTGAATAAATCCAGATATTATCTCCCTAAG
128 CAGGTCTTATCTCCCTGAGATTACAATGGAATAGACCGAAGAAATCCAGATATTATCTCCCTAAG
* * * *
37464324 AAATAGTGGAGCTA-ATAAAAAATGGTGAATCTGATCTCCCTGAGATTATAGCGGAGCAGATTAA
193 AAATAGTGGAGC-AGATAAAAAACGGTGAATCTGATCTCCATAAGATTACAGCGGAGCAGATTAA
* *
37464388 AGCTAGTAATCCTATTATCCTGAGATTACAGTGGAACAGATT
257 AGCCAGTAATCCTATTACCCTGAGATTACAGTGGAACAGATT
37464430 AAAATAAAGG
Statistics
Matches: 258, Mismatches: 35, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
306 2 0.01
307 252 0.98
308 4 0.02
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (307 bp):
AATCTGATCTCCCTGAGAGTACAGCGGAGCAAATTAATGCCAGTAATCCTATTACCCTGAGATTA
CAGTGGAACAGATGAAAATAAAGGAACTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
GTCTTATCTCCCTGAGATTACAATGGAATAGACCGAAGAAATCCAGATATTATCTCCCTAAGAAA
TAGTGGAGCAGATAAAAAACGGTGAATCTGATCTCCATAAGATTACAGCGGAGCAGATTAAAGCC
AGTAATCCTATTACCCTGAGATTACAGTGGAACAGATTGAAGCTAGT
Found at i:37464521 original size:526 final size:526
Alignment explanation
Indices: 37463301--37465214 Score: 3244
Period size: 526 Copynumber: 3.6 Consensus size: 526
37463291 AGAATTTCAG
* * * * * *
37463301 ATCTTATCTCCCTAAGATTATAGCGGAGCTGATTGAAGCGAGTAATCCTATCT-CCCTAAGATTA
1 ATCTGATCTCCCTGAGATTATAGCGGAGCAGATTAAAGCTAGTAATCCTAT-TACCCTGAGATTA
* * *
37463365 CAGTGGAGC-GAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATGGCATCA
65 CAGTGGAACAG-ATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
* *
37463429 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTACCAGATCTTGTCTCCCTGAGTA
129 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTGTCTCCCTGAGCA
**
37463494 ATAGTGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGTAGAGCAGATTGAAGC
194 ATAGTGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGC
* * *
37463559 TAGTAATCCTATCTCCTTAAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAG
259 CAGTAATCCTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAG
* * * *
37463624 ATTACAGCGGAGCAAATTAAAGCCAGTAATCCTATTTCCCTGATATTACAGTGGAGCAGATGAAA
324 AGTACAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGATATTACAGTGGAGCGGATGAAA
* *
37463689 ATAAAGGATCTTATCTCTCTAAAGTTA-ATGTAC-AGTAGATCGCATCAGGTCTTATCT-CCTGA
389 ATAAAGGAACTTATCTCTCTATAGTTACA-GTACTA-TAGATCGCATCAGGTCTTATCTCCCTGA
** * * *
37463751 GATTGTAGTGGAATACACTGAATAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAA
452 GATTACAGTGGAATAGACTGAATAAATCCAGATATTATCTCCCTAAGAAATAGTGGAGCTAATAA
37463816 AAAATGGTGA
517 AAAATGGTGA
*
37463826 ATCTGATCTCCCTGAGATTATAGCGGAGCAGATTAATGCTAGTAATCCTATTACCCTGAGATTAC
1 ATCTGATCTCCCTGAGATTATAGCGGAGCAGATTAAAGCTAGTAATCCTATTACCCTGAGATTAC
*
37463891 AGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* *
37463956 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCTAGATCTTGTCTCCCTGAGTAAT
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTGTCTCCCTGAGCAAT
37464021 AGTGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCA
196 AGTGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCA
** * *
37464086 GTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGAG
261 GTAATCCTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGAG
37464151 TACAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGATATTACAGTGGAGCGGATGAAAAT
326 TACAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGATATTACAGTGGAGCGGATGAAAAT
37464216 AAAGGAACTTATCTCTCTATAGTTACAGTACTATAGATCGCATCAGGTCTTATCTCCCTGAGATT
391 AAAGGAACTTATCTCTCTATAGTTACAGTACTATAGATCGCATCAGGTCTTATCTCCCTGAGATT
*
37464281 ACAATGGAATAGACTGAATAAATCCAGATATTATCTCCCTAAGAAATAGTGGAGCTAATAAAAAA
456 ACAGTGGAATAGACTGAATAAATCCAGATATTATCTCCCTAAGAAATAGTGGAGCTAATAAAAAA
37464346 TGGTGA
521 TGGTGA
*
37464352 ATCTGATCTCCCTGAGATTATAGCGGAGCAGATTAAAGCTAGTAATCCTATTATCCTGAGATTAC
1 ATCTGATCTCCCTGAGATTATAGCGGAGCAGATTAAAGCTAGTAATCCTATTACCCTGAGATTAC
37464417 AGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
37464482 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTGTCTCCCTGAGCAAT
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTGTCTCCCTGAGCAAT
*
37464547 AGTGGAGCAGATCGAAGACGGTGAATCTCATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCA
196 AGTGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCA
** * *
37464612 GTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGAG
261 GTAATCCTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGAG
* *
37464677 TACAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGATATTATAGTGGTGCGGATGAAAAT
326 TACAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGATATTACAGTGGAGCGGATGAAAAT
*
37464742 AAAGGAACTTATCTCTCTATAGTTACAGTACTGTAGATCGCATCAGGTCTTATCTCCCTGAGATT
391 AAAGGAACTTATCTCTCTATAGTTACAGTACTATAGATCGCATCAGGTCTTATCTCCCTGAGATT
37464807 ACAGTGGAATAGACTGAATAAATCCAGATATTATCTCCCTAAGAAATAGTGGAGCTAATAAAAAA
456 ACAGTGGAATAGACTGAATAAATCCAGATATTATCTCCCTAAGAAATAGTGGAGCTAATAAAAAA
37464872 TGGTGA
521 TGGTGA
*
37464878 ATCTGATCTCCCTGAGATTATAGCGGAGCAGATTAAAGCTAGTAATCCTATTATCCTGAGATTAC
1 ATCTGATCTCCCTGAGATTATAGCGGAGCAGATTAAAGCTAGTAATCCTATTACCCTGAGATTAC
37464943 AGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* * *
37465008 TCTTATCTCCCTGAGATTACTGTGGAATAGATCGAAGAGTTCCTGATCTTGTCTCCCTGAGCAAT
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTGTCTCCCTGAGCAAT
* * *
37465073 AGTGGAGTAGATCGAAGACGGTGAATCTTATCTCCAAAATATTACAGCGGAGCAGATTGAAGCCA
196 AGTGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCA
** * *
37465138 GTAATCCTATCTCCCTGAGATTACAGCAGAGCAGGCTGAAGCCAGTAATCCTATTTCCCTGAGAT
261 GTAATCCTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGAG
*
37465203 TACAGTGGAGTA
326 TACAGCGGAGTA
37465215 GATTAAAATA
Statistics
Matches: 1326, Mismatches: 58, Indels: 9
0.95 0.04 0.01
Matches are distributed among these distances:
524 1 0.00
525 411 0.31
526 914 0.69
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (526 bp):
ATCTGATCTCCCTGAGATTATAGCGGAGCAGATTAAAGCTAGTAATCCTATTACCCTGAGATTAC
AGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTGTCTCCCTGAGCAAT
AGTGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCA
GTAATCCTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGAG
TACAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGATATTACAGTGGAGCGGATGAAAAT
AAAGGAACTTATCTCTCTATAGTTACAGTACTATAGATCGCATCAGGTCTTATCTCCCTGAGATT
ACAGTGGAATAGACTGAATAAATCCAGATATTATCTCCCTAAGAAATAGTGGAGCTAATAAAAAA
TGGTGA
Found at i:37464975 original size:307 final size:307
Alignment explanation
Indices: 37464357--37464961 Score: 790
Period size: 307 Copynumber: 2.0 Consensus size: 307
37464347 GGTGAATCTG
* * * *
37464357 ATCTCCCTGAGATTATAGCGGAGCAGATTAAAGCTAGTAATCCTATTATCCTGAGATTACAGTGG
1 ATCTCCCTGAGAGTACAGCGGAGCAAATTAAAGCCAGTAATCCTATTATCCTGAGATTACAGTGG
* *
37464422 AACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA
66 AACAGATGAAAATAAAGGATATTATCTCTCTGAAGTTACAGTACAGTAGATCGCATCAGGTCTTA
** * * * *
37464487 TCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTGTCTCCCTGAGCAATAGTGG
131 TCTCCCTGAGATTACAGTGGAATAGACCGAAGAAATCCAGATATTATCTCCCTAAGAAATAGTGG
** * *
37464552 AGCAGATCGAAGACGGTGAATCTCATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAAT
196 AGCAGATAAAAAACGGTGAATCTCATCTCCATAAGATTACAGCGGAGCAGATTAAAGCCAGTAAT
* ** *
37464617 CCTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCTT
261 CCTATCTCCCTGAGATTACAGTGGAACAGATTGAAAATAGTAATATT
* * * *
37464664 ATCTCCCTGAGAGTACAGCGGAGTAAATTGAAGCCAGTAATCCTATT-TCCCTGATATTATAGTG
1 ATCTCCCTGAGAGTACAGCGGAGCAAATTAAAGCCAGTAATCCTATTAT-CCTGAGATTACAGTG
** * *
37464728 GTGCGGATGAAAATAAAGGA-ACTTATCTCTCT-ATAGTTACAGTACTGTAGATCGCATCAGGTC
65 GAACAGATGAAAATAAAGGATA-TTATCTCTCTGA-AGTTACAGTACAGTAGATCGCATCAGGTC
* *
37464791 TTATCTCCCTGAGATTACAGTGGAATAGACTGAATAAATCCAGATATTATCTCCCTAAGAAATAG
128 TTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAAATCCAGATATTATCTCCCTAAGAAATAG
* * * * * *
37464856 TGGAGCTA-ATAAAAAATGGTGAATCTGATCTCCCTGAGATTATAGCGGAGCAGATTAAAGCTAG
193 TGGAGC-AGATAAAAAACGGTGAATCTCATCTCCATAAGATTACAGCGGAGCAGATTAAAGCCAG
*
37464920 TAATCCTAT-TATCCTGAGATTACAGTGGAACAGATT-AAAATA
257 TAATCCTATCT-CCCTGAGATTACAGTGGAACAGATTGAAAATA
37464962 AAGGATATTA
Statistics
Matches: 257, Mismatches: 36, Indels: 11
0.85 0.12 0.04
Matches are distributed among these distances:
306 8 0.03
307 248 0.96
308 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (307 bp):
ATCTCCCTGAGAGTACAGCGGAGCAAATTAAAGCCAGTAATCCTATTATCCTGAGATTACAGTGG
AACAGATGAAAATAAAGGATATTATCTCTCTGAAGTTACAGTACAGTAGATCGCATCAGGTCTTA
TCTCCCTGAGATTACAGTGGAATAGACCGAAGAAATCCAGATATTATCTCCCTAAGAAATAGTGG
AGCAGATAAAAAACGGTGAATCTCATCTCCATAAGATTACAGCGGAGCAGATTAAAGCCAGTAAT
CCTATCTCCCTGAGATTACAGTGGAACAGATTGAAAATAGTAATATT
Found at i:37465480 original size:263 final size:263
Alignment explanation
Indices: 37463305--37465426 Score: 845
Period size: 263 Copynumber: 8.1 Consensus size: 263
37463295 TTTCAGATCT
* * * * * * ** * *
37463305 TATCTCCCTAAGATTATAGCGGAGCTGATTGAAGCGAGTAATCCTATCTCCCTAAGATTACAGTG
1 TATCTCCCTAAGATTACAGCAGAACAGACTAAAGAAAGTAATCCTATCTCCCTGAGATTACAGTA
* * * *
37463370 GAG-CGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATGGCATCAGGTCT
66 GAGTAG-ATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
* * * * *
37463434 TATCTCCCTGAGATTACAGTGGAATAGACCGAAG-AGTACCAGATCTTGTCTCCCTGAGTAATAG
130 TATCTCCCTGAGATTACAGTGGAATAGATCGAAGAAAT-CCAGATCTTATCTCCCTAAGCAATAG
* ** * * * * ** *
37463498 TGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGTAGAGCAGATTGAAGCTAGT
194 TGGAGTAGATAAAAAACGGTGAATCTGATCTCCAAAAGACTACAGCGGAGCAGATTGAAGCCAGT
37463563 AATCC
259 AATCC
* * * * ** **
37463568 TATCTCCTTAAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCG
1 TATCTCCCTAAGATTACAGCAGAACAGACTAAAGAAAGTAATCCTATCTCCCTGAGATTACAGTA
* * *** * * * * * * * *
37463633 GAGCAAATT-AAAGCCAGTA-ATCCTATTTCCCTGATA-TTACAGTGGAGCAGAT-GAAAATAAA
66 GAGTAGATTAAAATAAAGGATAT--TATCTCTCT-AAAGTTACAGTAGAGTAGATCG--CAT-CA
* * * * * *
37463694 GGATCTTATCTCTCT-AAAGTTA-A-TGTACAGTAGATC---G-CAT-CAGGTCTTATCT-CCTG
125 GG-TCTTATCTCCCTGAGA-TTACAGTGGA-A-TAGATCGAAGAAATCCAGATCTTATCTCCCTA
* * * * ** * ** * * *
37463750 AG-ATTGTAGTGGAATACACTGAATAAATC-CAG-ATCTTATCTCCCTAAG-CAATAGTGGAGCT
186 AGCA--ATAGTGGAGTAGA-T-AA-AAAACGGTGAATCTGATCTCCAAAAGACTACAGCGGAGC-
** ****
37463811 A-ATAAAAAATGGTGAAT-C
245 AGATTGAAGCCAGT-AATCC
* * * * * * **
37463829 TGATCTCCCTGAGATTATAGCGGAGCAGATTAATGCTAGTAATCCTAT-TACCCTGAGATTACAG
1 T-ATCTCCCTAAGATTACAGCAGAACAGACTAAAGAAAGTAATCCTATCT-CCCTGAGATTACAG
* ** * *
37463893 TGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
64 TAGAGTAGATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTC
* ** * * * *
37463958 TTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCTAGATCTTGTCTCCCTGAGTAATAG
129 TTATCTCCCTGAGATTACAGTGGAATAGATCGAAGAAATCCAGATCTTATCTCCCTAAGCAATAG
* ** * * * *
37464023 TGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
194 TGGAGTAGATAAAAAACGGTGAATCTGATCTCCAAAAGACTACAGCGGAGCAGATTGAAGCCAGT
37464088 AATCC
259 AATCC
* ** * * * ** * * **
37464093 TATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGAGTACAGCG
1 TATCTCCCTAAGATTACAGCAGAACAGACTAAAGAAAGTAATCCTATCTCCCTGAGATTACAGTA
* * *** * * * * * ** * *
37464158 GAGTAAATT-GAAGCCAGTA-ATCCTATTTCCCTGATA-TTACAGTGGAGCGGAT-GAAAATAAA
66 GAGTAGATTAAAATAAAGGATAT--TATCTCTCT-AAAGTTACAGTAGAGTAGATCG--CAT-CA
* * * *** * * *
37464219 GGAACTTATCTCTCT-ATAGTTACAGTACTATAGATC---G-CAT-CAGGTCTTATCTCCCTGAG
125 GG-TCTTATCTCCCTGAGA-TTACAGTGGAATAGATCGAAGAAATCCAGATCTTATCTCCCTAAG
* * * * ** ** * * *
37464278 -ATTACAATGGAATAGACTGAATAAATC-CAGATAT-T-ATCTCCCTAAGA-AATAGTGGAGCTA
188 CA--ATAGTGGAGTAGA-T-AA-AAAACGGTGA-ATCTGATCTCCAAAAGACTACAGCGGAGC-A
** ****
37464338 -ATAAAAAATGGTGAAT-C
246 GATTGAAGCCAGT-AATCC
* * * * * ** *
37464355 TGATCTCCCTGAGATTATAGCGGAGCAGATTAAAGCTAGTAATCCTAT-TATCCTGAGATTACAG
1 T-ATCTCCCTAAGATTACAGCAGAACAGACTAAAGAAAGTAATCCTATCT-CCCTGAGATTACAG
* ** *
37464419 TGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
64 TAGAGTAGATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTC
* ** * *
37464484 TTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTGTCTCCCTGAGCAATAG
129 TTATCTCCCTGAGATTACAGTGGAATAGATCGAAGAAATCCAGATCTTATCTCCCTAAGCAATAG
* ** * * * *
37464549 TGGAGCAGATCGAAGACGGTGAATCTCATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
194 TGGAGTAGATAAAAAACGGTGAATCTGATCTCCAAAAGACTACAGCGGAGCAGATTGAAGCCAGT
37464614 AATCC
259 AATCC
* ** * * * ** * * **
37464619 TATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGAGTACAGCG
1 TATCTCCCTAAGATTACAGCAGAACAGACTAAAGAAAGTAATCCTATCTCCCTGAGATTACAGTA
* * *** * * * * * * * ** * *
37464684 GAGTAAATT-GAAGCCAGTA-ATCCTATTTCCCTGATA-TTATAGTGGTGCGGAT-GAAAATAAA
66 GAGTAGATTAAAATAAAGGATAT--TATCTCTCT-AAAGTTACAGTAGAGTAGATCG--CAT-CA
* * * **** * * *
37464745 GGAACTTATCTCTCT-ATAGTTACAGTACTGTAGATC---G-CAT-CAGGTCTTATCTCCCTGAG
125 GG-TCTTATCTCCCTGAGA-TTACAGTGGAATAGATCGAAGAAATCCAGATCTTATCTCCCTAAG
* * * ** ** * * *
37464804 -ATTACAGTGGAATAGACTGAATAAATC-CAGATAT-T-ATCTCCCTAAGA-AATAGTGGAGCTA
188 CA--ATAGTGGAGTAGA-T-AA-AAAACGGTGA-ATCTGATCTCCAAAAGACTACAGCGGAGC-A
** ****
37464864 -ATAAAAAATGGTGAAT-C
246 GATTGAAGCCAGT-AATCC
* * * * * ** *
37464881 TGATCTCCCTGAGATTATAGCGGAGCAGATTAAAGCTAGTAATCCTAT-TATCCTGAGATTACAG
1 T-ATCTCCCTAAGATTACAGCAGAACAGACTAAAGAAAGTAATCCTATCT-CCCTGAGATTACAG
* ** *
37464945 TGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
64 TAGAGTAGATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTC
* ** * * *
37465010 TTATCTCCCTGAGATTACTGTGGAATAGATCGAAGAGTTCCTGATCTTGTCTCCCTGAGCAATAG
129 TTATCTCCCTGAGATTACAGTGGAATAGATCGAAGAAATCCAGATCTTATCTCCCTAAGCAATAG
** * * * *
37465075 TGGAGTAGATCGAAGACGGTGAATCTTATCTCCAAAATATTACAGCGGAGCAGATTGAAGCCAGT
194 TGGAGTAGATAAAAAACGGTGAATCTGATCTCCAAAAGACTACAGCGGAGCAGATTGAAGCCAGT
37465140 AATCC
259 AATCC
* * * * ** * *
37465145 TATCTCCCTGAGATTACAGCAGAGCAGGCTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTG
1 TATCTCCCTAAGATTACAGCAGAACAGACTAAAGAAAGTAATCCTATCTCCCTGAGATTACAGTA
* *
37465210 GAGTAGATTAAAATAAATGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
66 GAGTAGATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
*
37465275 ATCTCCCTGAGATTACAGTGGAATAGA-CTGAAGAAATCCAGATCTTATGTCCCTAAGCAATAGT
131 ATCTCCCTGAGATTACAGTGGAATAGATC-GAAGAAATCCAGATCTTATCTCCCTAAGCAATAGT
* ***
37465339 GGAGCTA-ATAAAAAATGGTGAATCTGATCTCCCTGAGACTACAGCGGAGCAGATTGAAGCCAGT
195 GGAG-TAGATAAAAAACGGTGAATCTGATCTCCAAAAGACTACAGCGGAGCAGATTGAAGCCAGT
37465403 AATCC
259 AATCC
* *
37465408 TTTTTCCCTAAGATTACAG
1 TATCTCCCTAAGATTACAG
37465427 TGGAACGTAT
Statistics
Matches: 1382, Mismatches: 363, Indels: 228
0.70 0.18 0.12
Matches are distributed among these distances:
259 20 0.01
260 60 0.04
261 103 0.07
262 191 0.14
263 744 0.54
264 127 0.09
265 70 0.05
266 67 0.05
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (263 bp):
TATCTCCCTAAGATTACAGCAGAACAGACTAAAGAAAGTAATCCTATCTCCCTGAGATTACAGTA
GAGTAGATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
ATCTCCCTGAGATTACAGTGGAATAGATCGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTG
GAGTAGATAAAAAACGGTGAATCTGATCTCCAAAAGACTACAGCGGAGCAGATTGAAGCCAGTAA
TCC
Found at i:37465547 original size:482 final size:482
Alignment explanation
Indices: 37464629--37465645 Score: 1529
Period size: 482 Copynumber: 2.1 Consensus size: 482
37464619 TATCTCCCTG
* * * * * * *
37464629 AGATTACAGTGGAGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGAGTACAGCGGAGTAAATTG
1 AGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCAGAGCAAACTG
* * * *
37464694 AAGCCAGTAATCCTATTTCCCTGATATTATAGTGGTGCGGATGAAAATAAAGGAACTTATCTCTC
66 AAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAGCAGATGAAAATAAAGGAACTTATCTCTC
* *
37464759 TATAGTTACAGTACTGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGA
131 TAAAGTTACAGTACAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGA
*
37464824 ATAAATCCAGATATTATCTCCCTAAGAAATAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCC
196 AGAAATCCAGATATTATCTCCCTAAGAAATAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCC
* * * *
37464889 CTGAGATTATAGCGGAGCAGATTAAAGCTAGTAATCCTATTATCCTGAGATTACAGTGGAACAGA
261 CTGAGACTACAGCGGAGCAGATTAAAGCCAGTAATCCTATTATCCTAAGATTACAGTGGAACAGA
* *
37464954 TTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCC
326 TTAAAATAAAGGATATGATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGGTCTTATCTCCC
* * * * *
37465019 TGAGATTACTGTGGAATAGATCGAAGAGTTCCTGATCTTGTCTCCCTGAGCAATAGTGGAG-TAG
391 TGAGATTACAGTGGAATAGATCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTA-
*
37465083 ATCGAAGACGGTGAATCTTATCTCCAAA
455 ATCGAAAACGGTGAATCTTATCTCCAAA
* **
37465111 ATATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCAGAGCAGGCTG
1 AGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCAGAGCAAACTG
* * * *
37465176 AAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAGTAGATTAAAATAAATGATCTTATCTCTC
66 AAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAGCAGATGAAAATAAAGGAACTTATCTCTC
*
37465241 TAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGA
131 TAAAGTTACAGTACAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGA
* * *
37465306 AGAAATCCAGATCTTATGTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCC
196 AGAAATCCAGATATTATCTCCCTAAGAAATAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCC
* *
37465371 CTGAGACTACAGCGGAGCAGATTGAAGCCAGTAATCCT-TTTTCCCTAAGATTACAGTGGAAC-G
261 CTGAGACTACAGCGGAGCAGATTAAAGCCAGTAATCCTATTAT-CCTAAGATTACAGTGGAACAG
* *
37465434 TATTAAAATAAAGGATCTGATCTCTCTGAAGTTATAGTAGAGTAGATCACATCAGGTCTTATCTC
325 -ATTAAAATAAAGGATATGATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGGTCTTATCTC
*
37465499 CCTGATATTACAGTGGAATAGA-CGTAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAGC
389 CCTGAGATTACAGTGGAATAGATCG-AAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAGC
* * ***
37465563 TAATCGAAAATGGTGAATCTTCTCTCCCTG
453 TAATCGAAAACGGTGAATCTTATCTCCAAA
* *
37465593 AGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTACAG
1 AGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAG
37465646 TGAAACAAAT
Statistics
Matches: 481, Mismatches: 50, Indels: 8
0.89 0.09 0.01
Matches are distributed among these distances:
481 6 0.01
482 473 0.98
483 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (482 bp):
AGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCAGAGCAAACTG
AAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAGCAGATGAAAATAAAGGAACTTATCTCTC
TAAAGTTACAGTACAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGA
AGAAATCCAGATATTATCTCCCTAAGAAATAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCC
CTGAGACTACAGCGGAGCAGATTAAAGCCAGTAATCCTATTATCCTAAGATTACAGTGGAACAGA
TTAAAATAAAGGATATGATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGGTCTTATCTCCC
TGAGATTACAGTGGAATAGATCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAA
TCGAAAACGGTGAATCTTATCTCCAAA
Found at i:37466395 original size:658 final size:654
Alignment explanation
Indices: 37465140--37467298 Score: 2656
Period size: 658 Copynumber: 3.3 Consensus size: 654
37465130 TGAAGCCAGT
* * **
37465140 AATCCTATCTCCCTGAGATTACAGCAGAGCAGGCTGAAGCCAGTAATCCTATTTCCCTGAGATTA
1 AATCTTATCTCCCTAAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
** *
37465205 CAGTGGAGTAGATTAAAATAAATGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
* * * *
37465270 GTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATGTCCCTAAGCAA
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCT-CCTAAGAAA
* * * *
37465335 TAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCCCTGAGACTACAGCGGAGCAGATTGAAGCC
195 TAGTGGAGCTAATAGAAAATGGTGAATCTCATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCC
* * * *
37465400 AGTAATCCTTTTTCCCTAAGATTACAGTGGAACGTATTAAAATAAAGGATCTGATCTCTCTGAAG
260 AGTAATCCTTTTTCCCTGAGATTACAGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTAAAG
* * *
37465465 TTATAGTAGAGTAGATCACATCAGGTCTTATCTCCCTGATATTACAGTGGAATAGAC-GTAAGAA
325 TTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACTG-AAGAA
37465529 TTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATCGAAAATGGTGAATCTTCTCTCCCTGA
389 TTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATCGAAAATGGTGAATCTTCTCTCCCTGA
* *
37465594 GATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTACAGTGAAACAAATTAA
454 GATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTACAGTGGAACAGATTAA
* * *
37465659 AATAAAGAATCTTATCTCTCTGAAGTTATAGTAGAGCAGATCACATCAGGTCTTATCTCCCTGAG
519 AATAAAGAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAG
* *
37465724 ATTAAAGTGGAATAGACTGAAAAAATTCTAGATCTTATCTCCATAAGCAATAGTGGAGCTAATCG
584 ATTATAGTGGAATAGAC-GAAAAAATTC-AGATCTTATCTCC-TAAGCAATAGTGGAGCTAATTG
37465789 AAAATGGTG
646 AAAATGGTG
* * *
37465798 AATCTTCTCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCTTATTTCCCTGAGATTA
1 AATCTTATCTCCCTAAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* *
37465863 CAGTGGAACGGATTAAAAT-AAGAGATCTTATTTCTCTAAAGTTACAGTAGAGTAGATCGCATCA
66 CAGTGGAACAGATTAAAATAAAG-GATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCA
* * * *
37465927 GGTCTTATCTCCCTAAGATTACAGTGGAATAGACCAAAGAATTCCAGATCATATCTCTCGAAGAA
130 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTC-CTAAGAA
* *
37465992 ATAGTGGAGCTAATCGAAAATGGTGAATCTCATCTCCCTGAGATTACAACGGAGTAGATTGAAGC
194 ATAGTGGAGCTAATAGAAAATGGTGAATCTCATCTCCCTGAGATTACAGCGGAGTAGATTGAAGC
* * * * *
37466057 CAGTAATCCTTTTTTCCTGAGATTATAGTGGAACAAATTAAAATAAAGGAACTTATCTCTTTAAA
259 CAGTAATCCTTTTTCCCTGAGATTACAGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTAAA
* *
37466122 TTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTAAAGTGGAATAGACTGAAGAA
324 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAA
* *
37466187 TTCTAGATCTTATCTCCCTAAGCAATAGTTGAGCTAATCGAAAATGGTGAATCTTCTCTCCCTGA
389 TTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATCGAAAATGGTGAATCTTCTCTCCCTGA
* *
37466252 GATTACAGCGGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAA
454 GATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTACAGTGGAACAGATTAA
* *
37466317 AATAAAGAATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGTATCAGGTCTTATCTCCCTGAG
519 AATAAAGAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAG
* * * * * *
37466382 ATTATAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAG-ATGACAGCGGAGCTGATT
584 ATTATAGTGGAATAGA-CGAAAAAATTCAGATCTTATCT-CCTAAGCA--ATAGTGGAGCTAATT
** *
37466446 GAAGCTAGT-
645 GAAAATGGTG
* * ** * *** * * * *
37466455 AATCCTATCTCCTTAAGATTACAGTGGAGC-GAATTAAAATAAAG-GATCTTATCTCTCTGA-AG
1 AATCTTATCTCCCTAAGATTACAGCAGAGCAG-ATT-GAAGCCAGTAATCCTATTTCCCTGAGA-
* ** *** * ** * *
37466517 TTACAGTAGAGTAGA-TCGCAT-CAGG-TCTTATCTC-CTTGAGATTACAGTGGAATAGA-CTGA
63 TTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAG-TTACAGTAGAGTAGATC-G-
* * * * * * ** *
37466577 AGAGTTCCAGATCTTGTCTCCTTGAGCA--ATAGTGGAGA-AGATCGAAGACGGT-GA-ATCTTA
125 -CA--T-CAGGTCTTATCTCCCTGAG-ATTACAGTGGA-ATAGACCGAAGA-ATTCCAGATCTTA
* * * * ****
37466637 TCTCCATAAGATTACAGCGGAGC-AGATTGAAGCCAGT-AATC-CTATCTCCCTGAGATTACAGC
183 TCTCC-TAAGA-AATAGTGGAGCTA-ATAGAAAATGGTGAATCTC-ATCTCCCTGAGATTACAGC
* * * * *
37466699 GGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAGCGGATGAAAATAAAGGA
244 GGAGTAGATTGAAGCCAGTAATCCTTTTTCCCTGAGATTACAGTGGAACGAATTAAAATAAAGGA
*
37466764 TCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTTCCTGAGATTACAGTG
309 TCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTG
* * **
37466829 GAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGTAATAGTGGAGCTAATAAAAAATGGTGA
374 GAATAGACTGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATCGAAAATGGTGA
** * *
37466894 ATCTGATCTCCCTGAGATTACAGCGAAGCAGATTGAAGCCAGTAATCCTCTTTCCCTAAGATTAC
439 ATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTAC
* ** * * *
37466959 AGTGGAACGGAAAAAAATACAGGATCTTATCTCTCTGAAGTTACAGTAGAGTATATCGCATCAGG
504 AGTGGAACAGATTAAAATAAAGAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* * *
37467024 TCTTATCTCCTTGAGATTACT-GTGGAATAGACCAAAGAATTCCAGATCTTATCTCTCTAAGCAA
569 TCTTATCTCCCTGAGATTA-TAGTGGAATAGACGAAAAAATT-CAGATCTTATCTC-CTAAGCAA
*
37467088 TAGTTGAGCTAATTGAAAATGGTG
631 TAGTGGAGCTAATTGAAAATGGTG
*
37467112 AATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCT-ATGATT
1 AATCTTATCTCCCTAAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGA-GATT
* * * *
37467176 ACAGTGGAAC-GAATTAAAATAAAGGATCTTATTTCTCTGAAGTTACTGTAGAGTAGATTGCATC
65 ACAGTGGAACAG-ATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATC
*
37467240 AGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATAT-GAGATCTTATCTCC
129 AGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAAT-TCCAGATCTTATCTCC
37467299 CTGAGATTAT
Statistics
Matches: 1270, Mismatches: 187, Indels: 89
0.82 0.12 0.06
Matches are distributed among these distances:
653 5 0.00
654 23 0.02
655 18 0.01
656 61 0.05
657 501 0.39
658 614 0.48
659 22 0.02
660 22 0.02
661 4 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (654 bp):
AATCTTATCTCCCTAAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
CAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCTAAGAAAT
AGTGGAGCTAATAGAAAATGGTGAATCTCATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCCA
GTAATCCTTTTTCCCTGAGATTACAGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTAAAGT
TACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAATT
CCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATCGAAAATGGTGAATCTTCTCTCCCTGAGA
TTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTACAGTGGAACAGATTAAAA
TAAAGAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGAT
TATAGTGGAATAGACGAAAAAATTCAGATCTTATCTCCTAAGCAATAGTGGAGCTAATTGAAAAT
GGTG
Found at i:37466427 original size:175 final size:174
Alignment explanation
Indices: 37466237--37467474 Score: 702
Period size: 175 Copynumber: 7.1 Consensus size: 174
37466227 AAAATGGTGA
* * *
37466237 ATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTAC
* *
37466302 AGTGGAACAGATTAAAATAAAGAATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGTATCAGG
66 AGTGGAACAGATTAAAATAAAGGATCTTATCTCTCT-AAGTTACAGTAGAGTAGATCGAATCAGG
* *
37466367 TCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAATTTCAG
130 TCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAATTTCAG
* * * * *
37466412 ATCTTATCTCCCTGAGATGACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCTTAAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTAC
* *
37466477 AGTGGAGC-GAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
66 AGTGGAACAG-ATTAAAATAAAGGATCTTATCTCTCT-AAGTTACAGTAGAGTAGATCGAATCAG
* * *
37466541 GTCTTATCTCCTTGAGATTACAGTGGAATAGACTGAAGAGTTCCAG
129 GTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAATTTCAG
* * * * * * * * * * *
37466587 ATCTTGTCTCCTTGAGCA--ATAGTGGAGAAGATCGAAGACGGTGAATCTTATCTCCATAAGATT
1 ATCTTATCTCCCTGAG-ATTACAGCGGAGCAGATTGAAGCCAGT-AATCCTATTTCCCTAAGATT
* * * *** * * * * ** * * *
37466650 ACAGCGGAGCAGATT-GAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGTAAATTGAAGC
64 ACAGTGGAACAGATTAAAATAAAG-GATCTTATCTCTCTAAG-TTACAGTAGAGTAGATCGAA-T
* * * *** **
37466714 CAGTAATCCTATTTCCCTGAGATTACAGTGGAGCGGA-TGAA-AA-TAAAGG
126 CAG--GTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAATTTCA-G
* * ** * * * * * * *
37466763 ATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCGCA-TCAG--GTCTTATCTT-CCTGAGATT
1 ATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAAGCCAGTAATCCTAT-TTCCCTAAGATT
* * ** * * * * **
37466823 ACAGTGGAATAGACTGAAGAAATCCA-GATCTTATCTCCCTAAGTAATAGTGGAGCTA-ATAAAA
64 ACAGTGGAACAGA-T-TA-AAATAAAGGATCTTATCTCTCTAAGTTACAGTAGAG-TAGAT--CG
* * * * * * *
37466886 AAT-GGTGAATCTGATCTCCCTGAGATTACAG-CGAAGCAGATTGAAGCCA-GT-A-
123 AATCAG-G--TCTTATCTCCCTGAGATTACAGTGGAA-TAGACTGAAG-AATTTCAG
* * * * * * * *** ** * * * *
37466938 ATCCTCTTTCCCTAAGATTACAGTGGAACGGAAAAAAATACAG-GATCTTATCTCTCTGAAG-TT
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAG-ATTGAAGCCAGTAATCCTATTTCCCT-AAGATT
* ** * *** * * * * * *
37467001 ACAGTAGAGTATA-TCGCAT-CAGG-TCTTATCTC-CTTGAGATTACTGTGGAATAGACCAAAGA
64 ACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTC-TAAG-TTACAGTAGAGTAGATC---GA
* * * * * * * * *
37467062 ATTCCAGATCTTATCTCTCTAAGCA--ATAGTTGAGCTA-ATTGAA-AATGGTGA-
124 A-T-CAGGTCTTATCTCCCTGAG-ATTACAGTGGA-ATAGACTGAAGAAT-TTCAG
* *
37467113 ATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTATGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTAC
* * * *
37467178 AGTGGAAC-GAATTAAAATAAAGGATCTTATTTCTCTGAAGTTACTGTAGAGTAGATTGCATCAG
66 AGTGGAACAG-ATTAAAATAAAGGATCTTATCTCTCT-AAGTTACAGTAGAGTAGATCGAATCAG
* * *
37467242 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATATGAG
129 GTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAATTTCAG
* * *
37467288 ATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAATCTAGTAATCCTATTTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTAC
* * *
37467353 AGTGGAACAGATTAAAAGAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACAGATTAAAATAAAGGATCTTATCTCTCT-AAGTTACAGTAGAGTAGATCGAATCAGG
* *
37467418 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
130 TCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAATTTCAG
37467463 ATCTTATCTCCC
1 ATCTTATCTCCC
37467475 AAAGAAATGT
Statistics
Matches: 809, Mismatches: 191, Indels: 126
0.72 0.17 0.11
Matches are distributed among these distances:
172 3 0.00
173 57 0.07
174 83 0.10
175 526 0.65
176 35 0.04
177 31 0.04
178 69 0.09
179 5 0.01
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (174 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTAC
AGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAGTTACAGTAGAGTAGATCGAATCAGGT
CTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAATTTCAG
Found at i:37466895 original size:263 final size:263
Alignment explanation
Indices: 37466416--37466960 Score: 799
Period size: 263 Copynumber: 2.1 Consensus size: 263
37466406 TTTCAGATCT
* * * *
37466416 TATCTCCCTGAGATGACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCTTAAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCTAATTGAAGCCAGTAATCCTATCTCCCTAAGATTACAGTG
* *
37466481 GAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
66 GAGCGAATGAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
** * * *
37466546 ATCTCCTTGAGATTACAGTGGAATAGACTGAAGAGTTCCAGATCTTGTCTCCTTGAGCAATAGTG
131 ATCTCCTTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTG
** * * *
37466611 GAGAAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
196 GAGAAGATAAAAAACGGTGAATCTGATCTCCATAAGATTACAGCGAAGCAGATTGAAGCCAGTAA
37466676 TCC
261 TCC
* *
37466679 TATCTCCCTGAGATTACAGCGGAG-TAAATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGT
1 TATCTCCCTGAGATTACAGCGGAGCT-AATTGAAGCCAGTAATCCTATCTCCCTAAGATTACAGT
*
37466743 GGAGCGGATGAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
65 GGAGCGAATGAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
*
37466808 TATCTTCC-TGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGTAATAG
130 TATC-TCCTTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAG
* * * *
37466872 TGGAGCTA-ATAAAAAATGGTGAATCTGATCTCCCTGAGATTACAGCGAAGCAGATTGAAGCCAG
194 TGGAG-AAGATAAAAAACGGTGAATCTGATCTCCATAAGATTACAGCGAAGCAGATTGAAGCCAG
37466936 TAATCC
258 TAATCC
* * *
37466942 TCTTTCCCTAAGATTACAG
1 TATCTCCCTGAGATTACAG
37466961 TGGAACGGAA
Statistics
Matches: 252, Mismatches: 27, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
262 1 0.00
263 247 0.98
264 4 0.02
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (263 bp):
TATCTCCCTGAGATTACAGCGGAGCTAATTGAAGCCAGTAATCCTATCTCCCTAAGATTACAGTG
GAGCGAATGAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
ATCTCCTTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTG
GAGAAGATAAAAAACGGTGAATCTGATCTCCATAAGATTACAGCGAAGCAGATTGAAGCCAGTAA
TCC
Found at i:37467269 original size:85 final size:85
Alignment explanation
Indices: 37467172--37467444 Score: 266
Period size: 85 Copynumber: 3.2 Consensus size: 85
37467162 ATTTCCCTAT
*
37467172 GATTACAGTGGAACGAATTAAAATAAAGGATCTTATTTCTCTGAAGTTACTGTAGAGTAGATTGC
1 GATTACAGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACTGTAGAGTAGATTGC
37467237 ATCAGGTCTTATCTCCCTGA
66 ATCAGGTCTTATCTCCCTGA
* *** * * ** *
37467257 GATTACAGTGGAATAGACCGAAGAAT-ATGAGATCTTATCTCCCTG-AGATTA-TAGCGGAGCAG
1 GATTACAGTGGAA-CGAATTAA-AATAAAG-GATCTTATCTCTCTGAAG-TTACT-GTAGAGTAG
* * * * *
37467319 ATTGAATCTAGTAATCCTATTTCCCTAA
61 ATTGCATC-AG--GTCTTATCTCCCTGA
* * * *
37467347 GATTACAGTGGAAC-AGATTAAAAGAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCG
1 GATTACAGTGGAACGA-ATTAAAATAAAGGATCTTATCTCTCTGAAGTTACTGTAGAGTAGATTG
37467411 CATCAGGTCTTATCTCCCTGA
65 CATCAGGTCTTATCTCCCTGA
37467432 GATTACAGTGGAA
1 GATTACAGTGGAA
37467445 TAGACCGAAG
Statistics
Matches: 143, Mismatches: 33, Indels: 24
0.71 0.17 0.12
Matches are distributed among these distances:
85 37 0.26
86 9 0.06
87 34 0.24
88 34 0.24
89 5 0.03
90 24 0.17
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (85 bp):
GATTACAGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACTGTAGAGTAGATTGC
ATCAGGTCTTATCTCCCTGA
Found at i:37467297 original size:219 final size:219
Alignment explanation
Indices: 37462298--37467300 Score: 2650
Period size: 219 Copynumber: 22.8 Consensus size: 219
37462288 CCAGTAATTC
* *
37462298 TATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATTTGCCTGAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTG
* * * *
37462363 GAGCGGATGAAAATAAAGGATCTTATCCCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
66 GAACGAATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * *
37462428 ATCTCCCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCTCTAAGCAATAGTG
131 ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTG
*
37462493 GAGCTAATCGAAAATTGTGAATCT
196 GAGCTAATCGAAAATGGTGAATCT
* * * * ** *
37462517 TCTCTCCTTGAGATTACAGCGAAGCAGATTGAAGCCAGTAGTCCTATTTCTTTTAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTG
*
37462582 GAAC-AGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
66 GAACGA-ATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
* * * **
37462646 AAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTATCTAAGCAATAGT
130 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGT
37462711 GGAGCTAATCGAAAATGGTGAATCT
195 GGAGCTAATCGAAAATGGTGAATCT
* *
37462736 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTTAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTG
* * *
37462801 GAAC-AGATTAAAATAAAGGATCTTATCTCTCTGAAGTAACAGTAGAGTAGATTGCATCAGGTCT
66 GAACGA-ATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
* * * *
37462865 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATGTCCCTGAG-ATTACA
130 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCA--ATA
* * * * *
37462929 GCGGAG-TAGATTGAAATTAGT-AATCC
193 GTGGAGCTA-ATCGAAAATGGTGAATCT
* * * * * * *** * * * * * *
37462955 TATTTCCCTGAGACTACAGTGGAACGGATTAAAATAAAG-GATCTTATCTCTCT-AAAGTTACAA
1 TATCTCCCTGAGATTACAGCGGAGCAGATT-GAAGCCAGTAATCCTATTTCCCTGAGA-TTACAG
* ** ** * * * *
37463018 TAG-A-GTAGATT-GCATCTA-G-TCTTATCTGC-CT-AAGATTACAGTGGAATAGACCGAATAA
64 TGGAACG-A-ATTAAAATAAAGGATCTTATCT-CTCTAAAG-TTACAGTAGAGTAGATCG---CA
** * * * * * *
37463076 TTCCATATCATATCTCCC-GAAGA-AATAGTGGAGCTA-ATCGAA-AATGGT-GA-ATCTTATCT
122 -T-CAGGTCTTATCTCCCTG-AGATTACAGTGGA-ATAGACCGAAGAAT--TCCAGATCTTATCT
* * * *** *
37463135 CCCTAAG-ATTACAGTGGAGCAAATTGAAACCAGT-AATCC
181 CCCTAAGCA--ATAGTGGAGCTAATCGAAAATGGTGAATCT
* * * * ** *** * * *
37463174 TATTTCCCTGAGATTACAGTGGAACGGATAAAAATAAAG-AATCATATCTCTCTGA-AGTTACAG
1 TATCTCCCTGAGATTACAGCGGAGCAGAT-TGAAGCCAGTAATCCTATTTCCCTGAGA-TTACAG
* ** * * * * * * * * *
37463237 TAG-A-GTAGATT-GCAT-CAGG-TCTTATCACCCT-GAGATTATAGTGGAATAGACCGAAGAAT
64 TGGAACG-A-ATTAAAATAAAGGATCTTATCTCTCTAAAG-TTACAGTAGAGTAGATC---GCA-
* * * * * ** * * *
37463296 TTCAGATCTTATCTCCCTAAGATTATAGCGGAGCT-GATTGAAGCGAGT--A-ATCCTATCTCCC
122 -TCAGGTCTTATCTCCCTGAGATTACAGTGGA-ATAGACCGAAG-AATTCCAGATCTTATCTCCC
* * * *** *
37463357 TAAG-ATTACAGTGGAGCGAAT-TAAAATAAAGGATCT
184 TAAGCA--ATAGTGGAGCTAATCGAAAATGGTGAATCT
* ** * * * * * * *
37463393 TATCTCTCTGA-AGTTACAGTAGAGTAGATGGCA-TCAG--GTCTTATCTCCCTGAGATTACAGT
1 TATCTCCCTGAGA-TTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGT
* *** * * * * * * * * * * * *
37463454 GGAATAGACCGAAGAGTACCA-GATCTTGTCTCCCT-GAGTAATAGTGGAGCAGATCGAAGACGG
65 GGAA-CGAATTAA-AATA-AAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCA-TCAG
* * * ** ** * * * *
37463517 TGAATCTTATCTCCATAAGATTACAGTAGAGCAGATTGAAGCTAGT--A-ATCCTATCTCCTTAA
126 -G--TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAG-AATTCCAGATCTTATCTCCCTAA
* ** * **** *
37463579 G-ATTACAGCAGAGC-AGATTGAAGCCAGT-AATCC
187 GCA--ATAGTGGAGCTA-ATCGAAAATGGTGAATCT
* * *
37463612 TATCTCCCTGAGATTACAGCGGAGCAAATTAAAGCCAGTAATCCTATTTCCCTGATATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTG
* * *
37463677 GAGC-AGATGAAAATAAAGGATCTTATCTCTCTAAAGTTA-ATGTACAGTAGATCGCATCAGGTC
66 GAACGA-ATTAAAATAAAGGATCTTATCTCTCTAAAGTTACA-GTAGAGTAGATCGCATCAGGTC
** * * * *
37463740 TTATCT-CCTGAGATTGTAGTGGAATACACTGAATAAATCCAGATCTTATCTCCCTAAGCAATAG
129 TTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAG
**
37463804 TGGAGCTAATAAAAAATGGTGAATCT
194 TGGAGCTAATCGAAAATGGTGAATCT
* * * *
37463830 GATCTCCCTGAGATTATAGCGGAGCAGATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGT
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAA-GCCAGTAATCCTATTTCCCTGAGATTACAGT
*
37463894 GGAAC-AGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
65 GGAACGA-ATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTC
* * * * *
37463958 TTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCTAGATCTTGTCTCCCTGAGTAATAG
129 TTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAG
* *
37464023 TGGAGC-AGATCGAAGACGGTGAATCT
194 TGGAGCTA-ATCGAAAATGGTGAATCT
* * *
37464049 TATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTG
* ** * * * ** * * * *
37464114 GAGC-AGATTGAAGCT--AGTAATCTTATCTCCCTGAGAG-TACAGCGGAGTAAATTGAAGCCAG
66 GAACGA-ATT-AAAATAAAG-GATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCGCA-TCAG
* * * * *** * ** * *
37464175 TAATCCTATTTCCCTGATATTACAGTGGAGCGGA-TGAA-AA-TAAAGGAACTTATCTCTCTATA
126 --GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCA-GATCTTATCTCCCTA-A
** * * *
37464237 GTTACAGT--A-CTATAGATCG--CATCAG-G--TCT
187 GCAATAGTGGAGC--TA-ATCGAAAAT-GGTGAATCT
** * * * * * * *
37464266 TATCTCCCTGAGATTACAATGGAATAGACTGAATAAATCCAG-ATAT--TATCTCCCTAAGA-AA
1 TATCTCCCTGAGATTACAGCGG---AG-CAGATTGAAGCCAGTA-ATCCTATTTCCCTGAGATTA
* * * * * * * * ** * ***
37464327 TAGTGGAGCTAA-TAAAA-AATGGTGAATCTGATCTCCCT-GAGATTATAGCGGAGCAGATTAAA
61 CAGTGGAACGAATTAAAATAA-AG-G-ATCTTATCTCTCTAAAG-TTACAGTAGAGTAGATCGCA
* * * * * ** ** *
37464389 GCTAGTAATCCTAT-TATCCTGAGATTACAGTGGAACAGA-TTAA-AA-TAAAGGATATTATCTC
122 TC-AG--GTCTTATCT-CCCTGAGATTACAGTGGAATAGACCGAAGAATTCCA-GATCTTATCTC
* ** * * * *
37464450 TCTGAAGTTACAGTAGAG-TAGATCG--CATCAG-G--TCT
182 CCT-AAGCAATAGTGGAGCTA-ATCGAAAAT-GGTGAATCT
* ** ** * * *
37464485 TATCTCCCTGAGATTACAGTGGAATAGACCGAAG--AGTTCCAGATCTTGTCTCCCTGAGCA--A
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAG-T--A-ATCCTATTTCCCTGAG-ATTA
* * ** * ** * ** * * *
37464546 TAGTGGAGC-AGA-TCGAAGACGGTGAATCTCATCTC-C-ATAAGATTACAGCGGAGCAGATTGA
61 CAGTGGAACGA-ATTAAAATAAAG-G-ATCTTATCTCTCTA-AAG-TTACAGTAGAGTAGATCGC
* * * ** ** * *
37464607 AGCCAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT--A-ATCTTATCTC
121 A-TCAG--GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAG-AATTCCAGATCTTATCTC
* * * * **** *
37464669 CCTGAGAG-TACAGCGGAG-TAAATTGAAGCCAGT-AATCC
182 CCT-A-AGCAATAGTGGAGCT-AATCGAAAATGGTGAATCT
* * * * * * *** * * * * *
37464707 TATTTCCCTGATATTATAGTGGTGCGGA-TGAAAATAAAGGAA-CTTATCTCTCT-ATAGTTACA
1 TATCTCCCTGAGATTACAGCGGAGCAGATTG--AAGCCAGTAATCCTATTTCCCTGAGA-TTACA
*** * * * * *
37464769 GT---ACTGTAGA-TCGCAT-CAGG-TCTTATCTCCCT-GAGATTACAGTGGAATAGA-CTGAAT
63 GTGGAAC-G-A-ATTAAAATAAAGGATCTTATCTCTCTAAAG-TTACAGTAGAGTAGATC-G---
* * * * * * * ** * * *
37464826 AAATCCAGATATTATCTCCCTAAGA-AATAGTGGAGCTA-A-TAAAAAATGGT-GA-ATCTGATC
120 -CAT-CAGGTCTTATCTCCCTGAGATTACAGTGGA-ATAGACCGAAGAAT--TCCAGATCTTATC
* * * * * *
37464886 TCCCTGAG-ATTATAGCGGAGC-AGAT-TAAAGCTAGT-AATCC
180 TCCCTAAGCA--ATAGTGGAGCTA-ATCGAAA-ATGGTGAATCT
* * * * *** * * *
37464926 TAT-TATCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATAT--TATCTCTCTGA-AGTTAC
1 TATCT-CCCTGAGATTACAGCGGAGCAGATT-GAAGCCAGTA-ATCCTATTTCCCTGAGA-TTAC
* *** * * * * * * *
37464987 AGTAG-A-GTAGA-TCGCAT-CAGG-TCTTATCTCCCT-GAGATTACTGTGGAATAGATCGAAGA
62 AGTGGAACG-A-ATTAAAATAAAGGATCTTATCTCTCTAAAG-TTACAGTAGAGTAGATCG--CA
* * * * * * ** *
37465046 GTTCCTGATCTTGTCTCCCTGAGCA--ATAGTGGAGTAGATCGAAGACGGT-GA-ATCTTATCT-
122 --T-CAGGTCTTATCTCCCTGAG-ATTACAGTGGAATAGACCGAAGA-ATTCCAGATCTTATCTC
* ** * * * **** *
37465106 CCAAAATATTACAGCGGAGC-AGATTGAAGCCAGT-AATCC
182 CCTAAGCA--ATAGTGGAGCTA-ATCGAAAATGGTGAATCT
* **
37465145 TATCTCCCTGAGATTACAGCAGAGCAGGCTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTG
*
37465210 G-A-GTAGATTAAAATAAATGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTC
66 GAACG-A-ATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTC
* * *
37465273 TTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATGTCCCTAAGCAATAG
129 TTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAG
**
37465338 TGGAGCTAATAAAAAATGGTGAATCT
194 TGGAGCTAATCGAAAATGGTGAATCT
* * * *
37465364 GATCTCCCTGAGACTACAGCGGAGCAGATTGAAGCCAGTAATCCTTTTTCCCTAAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTG
* * * * *
37465429 GAACGTATTAAAATAAAGGATCTGATCTCTCTGAAGTTATAGTAGAGTAGATCACATCAGGTCTT
66 GAACGAATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
*
37465494 ATCTCCCTGATATTACAGTGGAATAGA-CGTAAGAATTCCAGATCTTATCTCCCTAAGCAATAGT
131 ATCTCCCTGAGATTACAGTGGAATAGACCG-AAGAATTCCAGATCTTATCTCCCTAAGCAATAGT
37465558 GGAGCTAATCGAAAATGGTGAATCT
195 GGAGCTAATCGAAAATGGTGAATCT
* *
37465583 TCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTG
* * * * * * *
37465648 AAACAAATTAAAATAAAGAATCTTATCTCTCTGAAGTTATAGTAGAGCAGATCACATCAGGTCTT
66 GAACGAATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * * * *
37465713 ATCTCCCTGAGATTAAAGTGGAATAGACTGAAAAAATTCTAGATCTTATCTCCATAAGCAATAGT
131 ATCTCCCTGAGATTACAGTGGAATAGACCG-AAGAATTCCAGATCTTATCTCCCTAAGCAATAGT
37465778 GGAGCTAATCGAAAATGGTGAATCT
195 GGAGCTAATCGAAAATGGTGAATCT
* * *
37465803 TCTCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCTTATTTCCCTGAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTG
* *
37465868 GAACGGATTAAAAT-AAGAGATCTTATTTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
66 GAACGAATTAAAATAAAG-GATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
* * * * * *
37465932 TATCTCCCTAAGATTACAGTGGAATAGACCAAAGAATTCCAGATCATATCTCTCGAAGAAATAGT
130 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGT
37465997 GGAGCTAATCGAAAATGGTGAATCT
195 GGAGCTAATCGAAAATGGTGAATCT
* * * * * *
37466022 CATCTCCCTGAGATTACAACGGAGTAGATTGAAGCCAGTAATCCTTTTTTCCTGAGATTATAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTG
* * * *
37466087 GAACAAATTAAAATAAAGGAACTTATCTCTTTAAATTTACAGTAGAGTAGATCGCATCAGGTCTT
66 GAACGAATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * * *
37466152 ATCTCCCTGAGATTAAAGTGGAATAGACTGAAGAATTCTAGATCTTATCTCCCTAAGCAATAGTT
131 ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTG
37466217 GAGCTAATCGAAAATGGTGAATCT
196 GAGCTAATCGAAAATGGTGAATCT
* *
37466241 TCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTG
* *
37466306 GAAC-AGATTAAAATAAAGAATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGTATCAGGTCT
66 GAACGA-ATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
* * * *
37466370 TATCTCCCTGAGATTATAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAG-ATGACA
130 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCA--ATA
* * * ** * *
37466434 GCGGAGCTGATTGAAGCTAGT-AATCC
193 GTGGAGCTAATCGAAAATGGTGAATCT
* * * * *** * * * *
37466460 TATCTCCTTAAGATTACAGTGGAGC-GAATTAAAATAAAG-GATCTTATCTCTCTGA-AGTTACA
1 TATCTCCCTGAGATTACAGCGGAGCAG-ATT-GAAGCCAGTAATCCTATTTCCCTGAGA-TTACA
* *** * ** * * *
37466522 GTAG-A-GTAGA-TCGCAT-CAGG-TCTTATCTC-CTTGAGATTACAGTGGAATAGA-CTGAAGA
63 GTGGAACG-A-ATTAAAATAAAGGATCTTATCTCTCTAAAG-TTACAGTAGAGTAGATC-G--CA
* * * * * ** *
37466580 GTTCCAGATCTTGTCTCCTTGAGCA--ATAGTGGAGA-AGATCGAAGACGGT-GA-ATCTTATCT
122 --T-CAGGTCTTATCTCCCTGAG-ATTACAGTGGA-ATAGACCGAAGA-ATTCCAGATCTTATCT
* * * * **** *
37466640 CCATAAG-ATTACAGCGGAGC-AGATTGAAGCCAGT-AATCC
181 CCCTAAGCA--ATAGTGGAGCTA-ATCGAAAATGGTGAATCT
* *
37466679 TATCTCCCTGAGATTACAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTG
* * *
37466744 GAGCGGATGAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
66 GAACGAATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * * *
37466809 ATCTTCCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGTAATAGTG
131 ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTG
**
37466874 GAGCTAATAAAAAATGGTGAATCT
196 GAGCTAATCGAAAATGGTGAATCT
* * * *
37466898 GATCTCCCTGAGATTACAGCGAAGCAGATTGAAGCCAGTAATCCTCTTTCCCTAAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTG
* * * *
37466963 GAACGGAA-AAAAATACAGGATCTTATCTCTCTGAAGTTACAGTAGAGTATATCGCATCAGGTCT
66 GAAC-GAATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
* * * *
37467027 TATCTCCTTGAGATTACTGTGGAATAGACCAAAGAATTCCAGATCTTATCTCTCTAAGCAATAGT
130 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGT
* *
37467092 TGAGCTAATTGAAAATGGTGAATCT
195 GGAGCTAATCGAAAATGGTGAATCT
*
37467117 TATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCT-ATGATTACAGT
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGA-GATTACAGT
* * * *
37467181 GGAACGAATTAAAATAAAGGATCTTATTTCTCTGAAGTTACTGTAGAGTAGATTGCATCAGGTCT
65 GGAACGAATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
*
37467246 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATAT-GAGATCTTATCTCCCT
130 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAAT-TCCAGATCTTATCTCCCT
37467301 GAGATTATAG
Statistics
Matches: 3869, Mismatches: 686, Indels: 458
0.77 0.14 0.09
Matches are distributed among these distances:
213 2 0.00
215 14 0.00
216 92 0.02
217 130 0.03
218 282 0.07
219 2673 0.69
220 414 0.11
221 125 0.03
222 125 0.03
223 10 0.00
225 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (219 bp):
TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTG
GAACGAATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTG
GAGCTAATCGAAAATGGTGAATCT
Found at i:37467347 original size:482 final size:480
Alignment explanation
Indices: 37466412--37467319 Score: 1109
Period size: 482 Copynumber: 1.9 Consensus size: 480
37466402 AGAATTTCAG
* * * * *
37466412 ATCTTATCTCCCTGAGATGACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCTTAAGATTAC
1 ATCTGATCTCCCTGAGATGACAGCGAAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTAC
* *
37466477 AGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGAATAAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
** * * *
37466542 TCTTATCTCCTTGAGATTACAGTGGAATAGACTGAAGAGTTCCAGATCTTGTCTCCTTGAGCAAT
131 TCTTATCTCCTTGAGATTACAGTGGAATAGACCAAAGAATTCCAGATCTTATCTCCTTAAGCAAT
*
37466607 AGTGGAGAAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCA
196 AGTGGAGAAGATCGAAAACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCA
** * **
37466672 GTAATCCTATCTCCCTGAGATTACAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGAGAT
261 GTAATCCTATCTCCCTGAGATTACAGCGGAACAAATTAAAGAAAGTAATCCTATTTCCCTGAGAT
* * * * * *
37466737 TACAGTGGAGCGGATGAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATC
326 TACAGTAGAGCAGATG-AAATAAAGGATCTTATCTCCCTAAAGTTACAGTAGAATAGACCGAATC
* * * *
37466802 AGGTCTTATCTTCCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGT
390 AGGTCTTATCTCCCTGAGATTACAGCGGAACAGACT-AAGAAATCCAGATCCTATCTCCCTAAGT
37466867 AATAGTGGAGCTAATAAAAAATGGTGA
454 AATAGTGGAGCTAATAAAAAATGGTGA
* * *
37466894 ATCTGATCTCCCTGAGATTACAGCGAAGCAGATTGAAGCCAGTAATCCTCTTTCCCTAAGATTAC
1 ATCTGATCTCCCTGAGATGACAGCGAAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTAC
* *
37466959 AGTGGAACGGAA-AAAAATACAGGATCTTATCTCTCTGAAGTTACAGTAGAGTATATCGCATCAG
66 AGTGGAAC-GAATAAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
*
37467023 GTCTTATCTCCTTGAGATTACTGTGGAATAGACCAAAGAATTCCAGATCTTATCT-CTCTAAGCA
130 GTCTTATCTCCTTGAGATTACAGTGGAATAGACCAAAGAATTCCAGATCTTATCTCCT-TAAGCA
* * * * *
37467087 ATAGTTGAGCTA-ATTGAAAATGGTGAATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAG
194 ATAGTGGAG-AAGATCGAAAACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAG
* * * * * * *
37467151 CCAGTAATCCTATTTCCCT-ATGATTACAGTGGAACGAATTAAAATAAAG-GATCTTATTTCTCT
258 CCAGTAATCCTATCTCCCTGA-GATTACAGCGGAACAAATT-AAAGAAAGTAATCCTATTTCCCT
* * * * * *
37467214 GA-AGTTACTGTAGAGTAGATTG-CAT-CAGG-TCTTATCTCCCT-GAGATTACAGTGGAATAGA
321 GAGA-TTACAGTAGAGCAGA-TGAAATAAAGGATCTTATCTCCCTAAAG-TTACAGTAGAATAGA
* *
37467274 CCGAAGAAT-ATGAGATCTTATCTCCCTGAGATTATAGCGGAGCAGA
383 CC---GAATCA-G-G-TCTTATCTCCCTGAGATTACAGCGGAACAGA
37467320 TTGAATCTAG
Statistics
Matches: 359, Mismatches: 53, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
478 2 0.01
479 25 0.07
480 3 0.01
481 7 0.02
482 285 0.79
483 11 0.03
484 26 0.07
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (480 bp):
ATCTGATCTCCCTGAGATGACAGCGAAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTAC
AGTGGAACGAATAAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCTTGAGATTACAGTGGAATAGACCAAAGAATTCCAGATCTTATCTCCTTAAGCAAT
AGTGGAGAAGATCGAAAACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCA
GTAATCCTATCTCCCTGAGATTACAGCGGAACAAATTAAAGAAAGTAATCCTATTTCCCTGAGAT
TACAGTAGAGCAGATGAAATAAAGGATCTTATCTCCCTAAAGTTACAGTAGAATAGACCGAATCA
GGTCTTATCTCCCTGAGATTACAGCGGAACAGACTAAGAAATCCAGATCCTATCTCCCTAAGTAA
TAGTGGAGCTAATAAAAAATGGTGA
Found at i:37467659 original size:393 final size:393
Alignment explanation
Indices: 37466893--37467866 Score: 1508
Period size: 393 Copynumber: 2.5 Consensus size: 393
37466883 AAAAATGGTG
* * * *
37466893 AATCTGATCTCCCTGAGATTACAGCGAAGCAGATTGAAGCCAGTAATCCTCTTTCCCTAAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTAAGATTA
** * *
37466958 CAGTGGAACGGAAAAAAATACAGGATCTTATCTCTCTGAAGTTACAGTAGAGTATATCGCATCAG
66 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* * * * *
37467023 GTCTTATCTCCTTGAGATTACTGTGGAATAGACCAAAGAATTCCAGATCTTATCTCTCTAAGCAA
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTCCAGATCTTATCTCCCAAAGAAA
*
37467088 TAGTTGAGCTAATTGAAAATGGTGAATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCC
196 TAGTGGAGCTAATTGAAAATGGTGAATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCC
* *
37467153 AGTAATCCTATTTCCCTATGATTACAGTGGAACGAATTAAAATAAAGGATCTTATTTCTCTGAAG
261 AGTAATCCTATTTCCCTAAGATTACAGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAG
* *** *
37467218 TTACTGTAGAGTAGATTGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAAT
326 TTACAGTAGAGTAGATCAAATCAAGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAAT
37467283 ATG-
391 -TGC
* *
37467286 AGATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAATCTAGTAATCCTATTTCCCTAAGATT
1 A-ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTAAGATT
* * *
37467351 ACAGTGGAACAGATTAAAAGAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCA
65 ACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
*
37467416 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCAAAGAA
130 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTCCAGATCTTATCTCCCAAAGAA
* *
37467481 AT-GTGGAGCTAATCT-AAATTGGTGAATCTTATCTCCCTAAGATTACAGCGGAGCAGATTTAAG
195 ATAGTGGAGCTAAT-TGAAAATGGTGAATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAG
* *
37467544 CCAGTAATCCTATTTCCCTAAGATTACAGTGGAACGGATTAAAATAAAGTATCTTATCTCTCTGA
259 CCAGTAATCCTATTTCCCTAAGATTACAGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGA
*
37467609 AGTTACAGTAGAGTAGATCAAATCAAGTCTTATGTCCCTGAGATTACAGTGGAATAGACCGAAGA
324 AGTTACAGTAGAGTAGATCAAATCAAGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGA
37467674 ATTGC
389 ATTGC
* * *
37467679 AATTGTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
1 AA-TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTAAGATT
* * *
37467744 ACAGTGGAGCGGATTAAAATAAAGGATCTTA--TCTCTGAAGTTACAGTAGAGCAGATCGTATCA
65 ACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
** *
37467807 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTTAGACCTTATCTCCCA
130 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTCCAGATCTTATCTCCCA
37467867 GATAATGTAG
Statistics
Matches: 530, Mismatches: 47, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
391 85 0.16
392 3 0.01
393 265 0.50
394 177 0.33
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (393 bp):
AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTAAGATTA
CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
GTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTCCAGATCTTATCTCCCAAAGAAA
TAGTGGAGCTAATTGAAAATGGTGAATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCC
AGTAATCCTATTTCCCTAAGATTACAGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAG
TTACAGTAGAGTAGATCAAATCAAGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAAT
TGC
Found at i:37467708 original size:175 final size:173
Alignment explanation
Indices: 37467509--37467849 Score: 547
Period size: 175 Copynumber: 2.0 Consensus size: 173
37467499 TTGGTGAATC
* *
37467509 TTATCTCCCTAAGATTACAGCGGAGCAGATTTAAGCCAGTAATCCTATTTCCCTAAGATTACAGT
1 TTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTACAGT
* *
37467574 GGAACGGATTAAAATAAAGTATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCAAATCAAGTCT
66 GGAACGGATTAAAATAAAGGATCTTA--TCTCTGAAGTTACAGTAGAGCAGATCAAATCAAGTCT
* *
37467639 TATGTCCCTGAGATTACAGTGGAATAGACCGAAGAATTGCAATTG
129 TATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTGCAATTG
* * *
37467684 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
1 TTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTACAGT
* ** *
37467749 GGAGCGGATTAAAATAAAGGATCTTATCTCTGAAGTTACAGTAGAGCAGATCGTATCAGGTCTTA
66 GGAACGGATTAAAATAAAGGATCTTATCTCTGAAGTTACAGTAGAGCAGATCAAATCAAGTCTTA
37467814 TCTCCCTGAGATTACAGTGGAATAGACCAAAGAATT
131 TCTCCCTGAGATTACAGTGGAATAGACCAAAGAATT
37467850 TTAGACCTTA
Statistics
Matches: 153, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
173 69 0.45
175 84 0.55
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (173 bp):
TTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTACAGT
GGAACGGATTAAAATAAAGGATCTTATCTCTGAAGTTACAGTAGAGCAGATCAAATCAAGTCTTA
TCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTGCAATTG
Found at i:37467753 original size:44 final size:44
Alignment explanation
Indices: 37452923--37467758 Score: 729
Period size: 44 Copynumber: 338.8 Consensus size: 44
37452913 CGAAATGGTG
** * *
37452923 AATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGC
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * ***
37452967 AATCCTATTTCCCTGAGATTACAGTGGAACGGATTAGAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAAGCTAGT
* ** * * * * * *
37453011 GATCTTATCTATCTTA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** ** * * *
37453053 -GTCTTATCTCCCTGAGATTATAGTGGAATAGACCGGAG-AATTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTA-GT
* *
37453096 CAGATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGT
1 -A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * **
37453142 AATCCTATCTCCCTAAGATTACAGTGGAGC-GAATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAG-ATTGAAGCT--AGT
* * * * * * *
37453186 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** **
37453228 -GTCTTATCTCTCTGAGATTACAGTGGAATAGACCGAA--TAGTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG-T
* * **
37453270 CCAGATCTTGTCTCCCTGAGCA--ATAGTGGAGCAGATCAAAGAC-AGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGCAGATTGAAG-CTAGT
* * * * *
37453316 GAATCTTTTCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * *
37453361 TATCCTATCTCCCTGGGATTACAGCGGAGCAGATTGAACCGAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * ** * * *
37453405 AATCCTATCTCTCAGAGATTACAGCAGAGAAAATTGAAGCAAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * **
37453449 AATCCTATTTCCCTGATATTATAGTGGAGCAGA-TGAAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37453493 GATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCGCATC-AGT
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** * * *
37453536 --TCTTATCTCCATGAGATTACAGCGGAATAAACTGAA--TAAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT-AGT
* * ** ** *
37453577 CCAAATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-ATAAAAAATGGT
1 ---AATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
* * *** *
37453623 GAATCTGATCTCCCTGAGATTATAACAGAGCATATT-AATGCTAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAA-GCTAGT
* * * **
37453668 AATCCTAT-TACCCTGAGATTACAGTGGAACCGATT-AAAATAAAG-
1 AATCTTATCT-CCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * * *
37453712 GATATTATCTCTCT-AAAGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * ** ***
37453754 -GTCTTATTTCCCTGAGATTACTGTGGAATAGGCCGAAG--AGTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG-T
* * ** * * * *
37453796 CCAGATCTTGTCTTCCTGA-ACAATAGTGGAGCAGATCGAAGATGGT
1 --A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
*** * * *
37453842 GAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * *
37453887 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * **
37453931 AATCCTATTTGCCTGAGATTACAGTGGAGC-G-TAAGAAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGAT-TGAAGCT--AGT
* * * * * * * *
37453975 GATCTTATCTCTCTAATG-TTACAGTAGAGTAGATCGCATC-A--
1 AATCTTATCTCCCTGA-GATTACAGTGGAGCAGATTGAAGCTAGT
* * ** * * *
37454016 AGTCTTATCTCCCTGATATTACAGTGGAATAGACTGAAG-AAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** *
37454059 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCAAATCGAAAATTGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGCAGATTGAAGCTAGT
* * * *
37454105 GAATCTTCTCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * * **
37454150 AATCCTATTTCTCTTAGATTATAGTGGAACAGATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * *
37454194 GATCTTATCTCTCTGA-ATTTATAGTAGAGTAGATTGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * ** ** * *
37454236 -GTCTAAACTCCCTGAGATT-CTAGTGGAATAGACCGAAG-AATT
1 AATCTTATCTCCCTGAGATTAC-AGTGGAGCAGATTGAAGCTAGT
* * * * ** *
37454278 CCAGATCTTATCTCCCTAAG-TAATAGTGGAGCTA-ATCGAAAATGGT
1 --A-ATCTTATCTCCCTGAGATTACAGTGGAGC-AGATTGAAGCTAGT
** * **
37454324 GAATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAAC
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * ***
37454369 AATCCTATTTCCCTGAGATTACAGTGGAACGGATTAGAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAAGCTAGT
* * * * * * * *
37454413 GATCTTATCTCTCTTA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * **
37454455 -GTCTTATCTCCCTGAGATTATAGTGGAATAGACCAGA--GAATTTCAG-
1 AATCTTATCTCCCTGAGATTACAGTGG---AG--CAGATTGAAGCT-AGT
* *
37454501 -ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * **
37454544 AATCCTATCTCCCTAAGATTACAGTGGAGC-GAATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAG-ATTGAAGCT--AGT
* * * * * * *
37454588 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** **
37454630 -GTCTTATCTCTCTGAGATTACAGTGGAATAGACCGAA--TAGTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG-T
* * * * **
37454672 CCAGATTTTGTCTCCCTAAGCA--ATAGTGGAGCAGATCAAAGAC-AGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGCAGATTGAAG-CTAGT
* * * * *
37454718 GAATCTTTTCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * *
37454763 AATCCTATCTCCCTGGGATTACAGCGGAGCAGATTGAACCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * ** * * *
37454807 AATCCTATCTCTCTGAGATTACAGCAGAGAAAATTGAAGCAAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * **
37454851 AATCCTATTTCCCTGATATTATAGTGGAGCAGA-TGAAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37454895 GATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** * *
37454937 -GTCCTATCTCCATGAGATTACAGCGGAATAAATTGAA--TAAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT-AGT
* * ** ** *
37454979 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-ATAAAAAATGGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
* * *** *
37455025 GAATCTGATCTCCCTGAGATTATAACAGAGCATATT-AATGCTAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAA-GCTAGT
* * * **
37455070 AATCCTAT-TACCCTGAGATTACAGTGGAACGGATT-AAAATAAAG-
1 AATCTTATCT-CCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37455114 GATATTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** ** ***
37455156 -GTCTTATTTCCCTGAGATTACTTTGGAATAGGCCGAAG--AGTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG-T
* * ** * * * *
37455198 CCAGATCTTGTCTTCCTGA-ACAATAGTGGAGCAGATCGAAGATGGT
1 --A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
*** * * *
37455244 GAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * ** * * *
37455289 AATCCTATCTCCTTGAGATTACAGCAGAGCAAATTTAAGCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * **
37455333 AATCCTATTTGCCTGAGATTACAGTGGAGC-GCA-TGAAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAG-ATTGAAGCT--AGT
* * * * * * *
37455377 GATCTTATCTCTCTAATG-TTACAGTAGAGTAGATCGAATC-AG-
1 AATCTTATCTCCCTGA-GATTACAGTGGAGCAGATTGAAGCTAGT
* * ** * * *
37455419 -GTCTTATCTCCCTGATATTACAGTGGAATAGACTGAAG-AAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** *
37455461 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCAAATCGAAAATTGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGCAGATTGAAGCTAGT
* * * * *
37455507 GAATCTTCTCTCCCTGAGATTACAGCGAAGCAGATTGAATCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * **
37455552 AATCCTATTTCCCTTAGATTATAGTGGAACAGATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37455596 GATCTTATCTCTCTAAAATTACAGTAGAGTAGATTGCATC-AG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** ** * *
37455638 -GTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAG-AATT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * ** *
37455680 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-ATCGAAAATGGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
** * *
37455726 GAATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGC
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * ***
37455771 AATCCTATTTCCCTGAGATTACAGTGGAACGGATTAGAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAAGCTAGT
* * * * * * * *
37455815 GATCTTATCTCTCTTA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** ** * **
37455857 -GTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAATTTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CTAGT
* *
37455901 AGATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGT
1 A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * **
37455946 AATCCTATCTCCCTAATATTAAAGTGGAGC-GAATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAG-ATTGAAGCT--AGT
* * * * * * *
37455990 GATCTTATCTCTCTGA-AGTTACA-TAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** **
37456031 -GTCTTATCTCTCTGAGATTACAGTGGAATAGACCGAA--TAGTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG-T
* * *
37456073 CCAGATCTTGTCTCCCTGAGCA--ATAGTGGAGCAGATCGAAGAC-AGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGCAGATTGAAG-CTAGT
* * * * * *
37456119 GAAACTTTTCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * *
37456164 AATCCTATCTCCCTGGGATTACAGCGGAGCAGATTGAACCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * *
37456208 AATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAG-TAAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT-AGT
* * * * **
37456252 AATCATATTTCCCTGATATTATAGTGGAGCAGA-TGAAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37456296 GATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * ** * * *
37456338 -GTCTTA-CTCCATGAGATTACAGCGGAATAAACTGAA--TAAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT-AGT
* * ** ** *
37456379 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-ATAAAAAATGGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
* *** *
37456425 GAATCTGT-TCTCCCTGAGATTATAACAGAGCATATT-AATGCTAGT
1 -AATCT-TATCTCCCTGAGATTACAGTGGAGCAGATTGAA-GCTAGT
* * * **
37456470 AATCCTAT-TACCCTGAGATTACAGTGGAACGGATT-AAAATAAAG-
1 AATCTTATCT-CCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37456514 GATATTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * ** ***
37456556 -GTCTTATTTCCCTGAGATTACTGTGGAATAGGCCGAAG--AGTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG-T
* * ** * * * *
37456598 CCAGATCTTGTCTTCCTGA-ACAATAGTGGAGCAGATCGAAGATGGT
1 --A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
*** * * *
37456644 GAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * *
37456689 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGCCT-GT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CTAGT
* * * * **
37456733 AATCCTATTTGCCTGAGATTACAGTGGAGCGGA-TGAAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37456777 GATCTTATCTCTCTAATG-TTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGA-GATTACAGTGGAGCAGATTGAAGCTAGT
* * ** * * *
37456819 -GTCTTATCTCCCTGATATTACAGTGGAATAGACTGAAG-AAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** *
37456861 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCAAATCGAAAATTGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGCAGATTGAAGCTAGT
* * *
37456907 GAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * **
37456952 AATCCTATTTCCCTTAGATTATAGTGGAACAGATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * *
37456996 GATCTTATCTCTCTGAAATTACAGTAGAGTAGATTGCATC-AG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** ** * *
37457038 -GTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAG-AATT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * ** *
37457080 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-ATCGAAAATGGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
** * *
37457126 GAATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGC
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * ***
37457171 AATCCTATTTCCCTGAGATTACAGTGGAACAGATTAGAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAAGCTAGT
* * * * * * * *
37457215 GATCTTATCTCTCTTA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** ** * *
37457257 -GTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAG-AATTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTA-GT
* *
37457300 CAGATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGT
1 -A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* **
37457346 AATCTTATCTCCCTAAGATTACAGTGGAGC-GAATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAG-ATTGAAGCT--AGT
* * * * * * *
37457390 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** ** **
37457432 -GTCTTATATATCTGAGATTACAGTGGAATAGACCGAA--TAGTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG-T
* * *
37457474 CCAGATCTTGTCTCCCTGAGCA--ATAGTGGAGCAGATCGAAGAC-AGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGCAGATTGAAG-CTAGT
* * * * *
37457520 GAATCTTTTCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * *
37457565 AATCCTATCTCCCTGGGATTACAGCGGAGCAGATTGAACCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * *
37457609 AATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCAAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * * **
37457653 AATCCTATTTCCCTGATATTATAGTAGAGCAGA-TAAAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37457697 GATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** * * * *
37457739 -GTCTTATCTCCATGAGATTGCAGCGGAATAAACT-AA-ATAAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT-AGT
* * ** ** *
37457781 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-ATAAAAAATGGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
* * ***
37457827 GAATCTAATCTCCCTGAGATTATAACAGAGCAGATT-AATGCTAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAA-GCTAGT
* * * **
37457872 AATCCTAT-TACCCTGAGATTACAGTGGAACGGATT-AAAATAAAG-
1 AATCTTATCT-CCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37457916 GATATTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-A--
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** ***
37457957 AGTCTTATTTCCCTGAAATTACTGTGGAATAGGCCGAAG--AGTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG-T
* * ** * * * * *
37458000 CCAGATCTTGTCTTCCTGA-ACAATAGGGGAGCAGATCGAAGATGGT
1 --A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
*** * * *
37458046 GAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * *
37458091 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * **
37458135 AATCCTATTTGCCTGAGATTACAGTGGAGCGGA-TGAAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37458179 GATCTTATCTCTCTAATG-TTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGA-GATTACAGTGGAGCAGATTGAAGCTAGT
* * ** * * *
37458221 -GTCTTATCT--CTGATATTACAGTGGAATAGACTGAAG-AAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** *
37458261 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCAAATCGAAAATTGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGCAGATTGAAGCTAGT
* * *
37458307 GAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * **
37458352 AATCCTATTTCCCTTAGATTATAGTGGAACAGATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37458396 GATCTTATCTCTCTAAAATTACAGTAGAGTAGATTGCATC-AG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** ** * *
37458438 -GTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAG-AATT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * ** *
37458480 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-ATCGAAAATGGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
** * *
37458526 GAATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGC
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * ***
37458571 AATCCTATTTCCCTGAGATTACAGTGGAACAGATTAGAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAAGCTAGT
* * * * * * * *
37458615 GATCTTATCTCTCTTA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * ** ** * **
37458657 -GTCTTATCTTCCTGAGATTATAGTGGAATAGACCGAAGAATTTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CTAGT
* *
37458701 AGATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGT
1 A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * ** **
37458746 AATCCTATCTCCCTAAGATTACAGTGGAGC-GAATT-AAAATAAA
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAG-ATTGAAGCTAGT
* ** * * * *
37458789 AGATCTTATCTCTCTGA-AGTTACAGTAAAGTAGATCGCATC-AG-
1 A-ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** *
37458832 -GTCTTATCTCTCTGAGATTACAGTGGAATAGACTGAA--TAGTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG-T
* * *
37458874 CCAGATCTTGTCTCCCTGAGCA--ATAGTGGAGCAGATCGAAGAC-AGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGCAGATTGAAG-CTAGT
* * * * * *
37458920 GAATCTTTTCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAAT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * *
37458965 AATCCTATCTCCCTGGGATTACAGCGGAGCAGATTGAACCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * *
37459009 AATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCAAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * * **
37459053 AATCCTATTTCCCTGATATTATAGTAGAGCAGA-TAAAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37459097 GATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * ** * * *
37459139 -GTCTTATCTCCATGAGATTACAGCGGAATAAACTGAA--TAAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT-AGT
* * ** ** *
37459181 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-ATAAAAAATGGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
* * * ***
37459227 GAATCTAATCTCCCTGAGACTATAACAGAGCAGATT-AATGCTAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAA-GCTAGT
* * * * **
37459272 AATCCTAT-TACCCTGAGTTTACAGTGGAACGGATT-AAAATAAAG-
1 AATCTTATCT-CCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * ** * * * * *
37459316 GATATTATCTCTGTGA-AGTTACAGTAGAGTAGATCGCATC-A--
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** ***
37459357 AGTCTTATTTCCCTGAAATTACTGTGGAATAGGCCGAAG--AGTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG-T
* * ** * * * *
37459400 CCAGATCTTGTCTTCCTGA-ACAATAGTGGAGCAGATCGAAGATGGT
1 --A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
*** * * *
37459446 GAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * *
37459491 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * **
37459535 AATCCTATTTGCCTGAGATTACAGTGGAGCGGA-TGAAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37459579 GATCTTATCTCTCTAATG-TTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGA-GATTACAGTGGAGCAGATTGAAGCTAGT
* * ** * * *
37459621 -GTCTTATCTCCCTGATATTACAGTGGAATAGACTGAAG-AAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** **
37459663 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCAAATCGAAAATTTT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGCAGATTGAAGCTAGT
* * *
37459709 GAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * **
37459754 AATCCTATTTCCCTTAGATTATAGTGGAACAGATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * *
37459798 GATCTTATCTCTCTGAAATTACAGTAGAGTAGATTGCATC-AG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** ** * *
37459840 -GTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAG-AATT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * ** *
37459882 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-ATCGAAAATGGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
* ** * *
37459928 GAATCTTATCTCCCTGAGAATACAGCAGAGCAGATTGAAGCCAGC
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * ***
37459973 AATCCTATTTCCCTGAGATTACAGTGGAACAGATTAGAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAAGCTAGT
* * * * * * * *
37460017 GATCTTATCTCTCTTA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** ** * *
37460059 -GTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAG-AATTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTA-GT
* *
37460102 CAGATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGT
1 -A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * **
37460148 AATCCTATCTCCCTAAGATTATAGTGGAGC-GAATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAG-ATTGAAGCT--AGT
* * * * * * *
37460192 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** *
37460234 -GTCTTATCTCTCTGAGATTACAGTGGAATAGACTGAA--TAGTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG-T
* * *
37460276 CCAGATCTTGTCTCCCTGAGCA--ATAGTGGAGCAGATCGAAGAC-AGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGCAGATTGAAG-CTAGT
* * * *
37460322 GAATCTTTTCTCCAT-AGGATTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGA-GATTACAGTGGAGCAGATTGAAGCTAGT
* * * * *
37460367 AATCCTATCTCCCTGGGATTACAGCGGAGCAGATTGAACCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * *
37460411 AATCCTATCTCTCTGAGATTACAGCGGAGAAAATTGAAGCAAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* ** * * * * **
37460455 AATCCTATAACCCTGATATTATAGTAGAGCAGA-TAAAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37460499 GATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * ** * * *
37460541 -GTCTTATCTCCATGAGATTACAGCGGAATAAACTGAA--TAAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT-AGT
* * ** ** *
37460583 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-ATAAAAAATGGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
* * ***
37460629 GAATCTAATCTCCCTGAGATTATAACAGAGCAGATT-AATGCTAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAA-GCTAGT
* *** **
37460674 AATCCTAT-TACCCTGAGATTACAGTGGAATGGATT-AAAATAAAG-
1 AATCTTATCT-CCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37460718 GATATTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-A--
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** ***
37460759 AGTCTTATTTCCCTGAAATTACTGTGGAATAGGCCGAAG--AGTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG-T
* * ** * * * *
37460802 CCAGATCTTGTCTTCCTGA-ACAATAGTGGAGCAGATCGAAGATGGT
1 --A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
**** * * *
37460848 GAATCTTATCTCAAAAAGATTACAGCGGAGCAAATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * *
37460893 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTTAAGCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * **
37460937 AATCCTATTTGCCTGAGATTACAGTGGAGCGGA-TGAAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37460981 GATCTTATCTCTCTAATG-TTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGA-GATTACAGTGGAGCAGATTGAAGCTAGT
* * ** * * *
37461023 -GTCTTATCTCCCTGATATTACAGTGGAATAGACTGAAG-AAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** *
37461065 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCAAATCGAAAATTGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGCAGATTGAAGCTAGT
* * *
37461111 GAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * * **
37461156 AATCCTATTTCCCTTAGATTATAGTAGAACAGATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * *
37461200 GATCTTATCTCTCTTA-ATTTACAGTAGAGTAGATTGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * ** ** * *
37461242 -GTCTAAACTCCCTGAGATT-CTAGTGGAATAGACCGAAG-AATT
1 AATCTTATCTCCCTGAGATTAC-AGTGGAGCAGATTGAAGCTAGT
* * * * *
37461284 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-ATCGAAAAC-GGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTG-AAGCTAGT
** * *
37461330 GAATCTTATCT-CCTGAGATTACAGCAGAGCAGATTGAAGCCAGC
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * ***
37461374 AATCCTATTTCCCTGAGATTACAGTGGAACGGATTAGAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAAGCTAGT
* * * * * * * *
37461418 GATCTTATCTCTCTTA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * ** ** * *
37461460 -GTCTTATCTCCTTGAGATTATAGTGGAATAGACCGAAG-AATTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTA-GT
* *
37461503 CAGATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGT
1 -A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * **
37461549 AATCCTATCTCCCTAAGATTACAGTGGAGC-GAATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAG-ATTGAAGCT--AGT
* * * * * * * * *
37461593 GATATTACCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** **
37461635 -GTCTTATCTCCCTCAGATTACAGTGGAATAGACCGAA--TAGTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG-T
* * *
37461677 CCAGATCTTGTCTCCCTGAGCA--ATAGTGGAGCAGATTGAAGAC-GGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGCAGATTGAAG-CTAGT
* * * *
37461723 GAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * *
37461768 AATCCTATCTCCCTGAGATTACAGCGGAGCAGATTAAACCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * *
37461812 AAACCTATCTCCCTGAGATTACAGTGGAGAAAATTGAAGCAAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * * **
37461856 AATCCTATTTCCCTAATATTATAGTGGAGCGGA-TGAAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * * *
37461900 GATCTTATCTCACT-AAAGTTACAGTAGTGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** * * *
37461942 -GTCTTATCTCCATGCGATTACAGCGGAATACACTGAA--TAAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT-AGT
* * * ** *
37461984 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-A-TAAAAATGGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
* * ** *
37462029 GAATCTGATCTCCCTGAGATTATAGCAGAGTAGATT-AATGCTAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAA-GCTAGT
* * * **
37462074 AATCCTAT-TACCCTGAGATTACAGTGGAACGGATT-AAAATAAAG-
1 AATCTTATCT-CCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37462118 GATATTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * ** * **
37462160 -GTCTTATCTCCCTAAGATTACTGTGGAATAAACCGAAG--AGTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG-T
* * * * * *
37462202 CCAGATCTTGTCTTCCTGAGCA--ATAGTGGAGCAGATCGACGAC-GGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGCAGATTGAAG-CTAGT
*** * * *
37462248 GAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * *
37462293 AAT-TCTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGT
1 AATCT-TATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * **
37462337 AATCCTATTTGCCTGAGATTACAGTGGAGCGGA-TGAAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * *
37462381 GATCTTATC-CCTCT-AAAGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCC-CTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* ** * * *
37462423 -GTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAG-AAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** *
37462465 CCAGATCTTATCTCTCTAAGCA--ATAGTGGAGCTA-ATCGAAAATTGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
* * * * *
37462511 GAATCTTCTCTCCTTGAGATTACAGCGAAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * ** * * **
37462556 AGTCCTATTTCTTTTAGATTACAGTGGAACAGATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * *
37462600 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** ** * *
37462642 -GTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAG-AATT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
** * * * ** *
37462684 CCAGATCTTATCTATCTAAGCA--ATAGTGGAGCTA-ATCGAAAATGGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
*
37462730 GAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * **
37462775 AATCCTATTTCCCTTAGATTACAGTGGAACAGATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * *
37462819 GATCTTATCTCTCTGA-AGTAACAGTAGAGTAGATTGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* ** ** * *
37462861 -GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAG-AATTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTA-GT
* * * **
37462904 CAGATCTTATGTCCCTGAGATTACAGCGGAGTAGATTGAAATTAGT
1 -A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * **
37462950 AATCCTATTTCCCTGAGACTACAGTGGAACGGATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37462994 GATCTTATCTCTCT-AAAGTTACAATAGAGTAGATTGCATCTAG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** ** *
37463037 --TCTTATCTGCCTAAGATTACAGTGGAATAGACCGAA--TAATT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT-AGT
* * * * ** *
37463078 CCATATCATATCTCCC-GAAGA-AATAGTGGAGCTA-ATCGAAAATGGT
1 --A-ATCTTATCTCCCTG-AGATTACAGTGGAGC-AGATTGAAGCTAGT
* * * *
37463124 GAATCTTATCTCCCTAAGATTACAGTGGAGCAAATTGAAACCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * **
37463169 AATCCTATTTCCCTGAGATTACAGTGGAACGGA-TAAAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * *
37463213 AATCATATCTCTCTGA-AGTTACAGTAGAGTAGATTGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * ** ** * *
37463255 -GTCTTATCACCCTGAGATTATAGTGGAATAGACCGAAG-AATTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTA-GT
* * * * *
37463298 CAGATCTTATCTCCCTAAGATTATAGCGGAGCTGATTGAAGCGAGT
1 -A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * **
37463344 AATCCTATCTCCCTAAGATTACAGTGGAGC-GAATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAG-ATTGAAGCT--AGT
* * * * * * *
37463388 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATGGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* ** ** * **
37463430 -GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTACC
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CTAGT
* * * * *
37463474 AGATCTTGTCTCCCTGAG-TAATAGTGGAGCAGATCGAAGAC-GGT
1 A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CTAGT
* * *
37463518 GAATCTTATCTCCATAAGATTACAGTAGAGCAGATTGAAGCTAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * ** *
37463563 AATCCTATCTCCTTAAGATTACAGCAGAGCAGATTGAAGCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * *
37463607 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTAAAGCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * **
37463651 AATCCTATTTCCCTGATATTACAGTGGAGCAGA-TGAAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * ** * * * *
37463695 GATCTTATCTCTCT-AAAGTTA-ATGTACAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACA-GTGGAGCAGATTGAAGCTAGT
* ** ** * * *
37463737 -GTCTTATCT-CCTGAGATTGTAGTGGAATACACTGAA--TAAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT-AGT
* * ** ** *
37463778 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-ATAAAAAATGGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
* * *
37463824 GAATCTGATCTCCCTGAGATTATAGCGGAGCAGATT-AATGCTAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAA-GCTAGT
* * **
37463869 AATCCTAT-TACCCTGAGATTACAGTGGAACAGATT-AAAATAAAG-
1 AATCTTATCT-CCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * *
37463913 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* ** ** * **
37463955 -GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CTAGT
* * * * *
37463999 AGATCTTGTCTCCCTGAG-TAATAGTGGAGCAGATCGAAGAC-GGT
1 A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CTAGT
* * * *
37464043 GAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
*
37464088 AATCCTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * *
37464132 AATCTTATCTCCCTGAGAGTACAGCGGAGTAAATTGAAGCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** *
37464176 AATCCTATTTCCCTGATATTACAGTGGAGCGGA-TGAAAATAAAGG
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * ** * * * *
37464221 AA-CTTATCTCTCT-ATAGTTACAGTACTA-TAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGT-GGAGCAGATTGAAGCTAGT
* * ** * *
37464262 -GTCTTATCTCCCTGAGATTACAATGGAATAGACTGAA--TAAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT-AGT
* * * * ** ** *
37464304 CCAGATATTATCTCCCTAAGA-AATAGTGGAGCTA-ATAAAAAATGGT
1 --A-ATCTTATCTCCCTGAGATTACAGTGGAGC-AGATTGAAGCTAGT
* * * *
37464350 GAATCTGATCTCCCTGAGATTATAGCGGAGCAGATTAAAGCTAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * **
37464395 AATCCTAT-TATCCTGAGATTACAGTGGAACAGATT-AAAATAAAG-
1 AATCTTATCT-CCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37464439 GATATTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* ** **
37464481 -GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAG--AGTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG-T
* * * *
37464523 CCAGATCTTGTCTCCCTGAGCA--ATAGTGGAGCAGATCGAAGAC-GGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGCAGATTGAAG-CTAGT
* * * * *
37464569 GAATCTCATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
*
37464614 AATCCTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * *
37464658 AATCTTATCTCCCTGAGAGTACAGCGGAGTAAATTGAAGCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * * ** *
37464702 AATCCTATTTCCCTGATATTATAGTGGTGCGGA-TGAAAATAAAGG
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * *** * * * *
37464747 AA-CTTATCTCTCT-ATAGTTACAGTACTGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* ** * *
37464788 -GTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAA--TAAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT-AGT
* * * * ** ** *
37464830 CCAGATATTATCTCCCTAAGA-AATAGTGGAGCTA-ATAAAAAATGGT
1 --A-ATCTTATCTCCCTGAGATTACAGTGGAGC-AGATTGAAGCTAGT
* * * *
37464876 GAATCTGATCTCCCTGAGATTATAGCGGAGCAGATTAAAGCTAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * **
37464921 AATCCTAT-TATCCTGAGATTACAGTGGAACAGATT-AAAATAAAG-
1 AATCTTATCT-CCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37464965 GATATTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** * * **
37465007 -GTCTTATCTCCCTGAGATTACTGTGGAATAGATCGAAGAGTTCCT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTG-A-AGCTAGT
* * * * * *
37465052 GATCTTGTCTCCCTGAGCA--ATAGTGGAGTAGATCGAAGAC-GGT
1 AATCTTATCTCCCTGAG-ATTACAGTGGAGCAGATTGAAG-CTAGT
*** * * *
37465095 GAATCTTATCTCCAAAATATTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* ** ** *
37465140 AATCCTATCTCCCTGAGATTACAGCAGAGCAGGCTGAAGCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * ** *
37465184 AATCCTATTTCCCTGAGATTACAGTGGAGTAGATT-AAAATAAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT-AGT
* * * * * * * *
37465228 GATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* ** * * *
37465270 -GTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAG-AAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * ** ** *
37465312 CCAGATCTTATGTCCCTAAGCA--ATAGTGGAGCTA-ATAAAAAATGGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
* * * *
37465358 GAATCTGATCTCCCTGAGACTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * **
37465403 AATCCTT-TTTCCCTAAGATTACAGTGGAAC-GTATT-AAAATAAAG-
1 AAT-CTTATCTCCCTGAGATTACAGTGGAGCAG-ATTGAAGCT--AGT
* * * * * * * *
37465447 GATCTGATCTCTCTGA-AGTTATAGTAGAGTAGA-TCACATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGA-AGCTAGT
* * ** * * *
37465489 -GTCTTATCTCCCTGATATTACAGTGGAATAGA-CGTAAG-AATT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTG-AAGCTAGT
* * * ** *
37465531 CCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-ATCGAAAATGGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
* * *
37465577 GAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * * **
37465622 AATCCTATTTCCCTAAGATTACAGTGAAACAAATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * *
37465666 AATCTTATCTCTCTGA-AGTTATAGTAGAGCAGA-TCACATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGA-AGCTAGT
* * ** * ** **
37465708 -GTCTTATCTCCCTGAGATTAAAGTGGAATAGACTGAAAAAATTCT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTG--AAGCTAGT
* * * * ** *
37465753 AGATCTTATCTCCATAAGCA--ATAGTGGAGCTA-ATCGAAAATGGT
1 A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
* ** *
37465797 GAATCTTCTCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * **
37465842 AATCTTATTTCCCTGAGATTACAGTGGAACGGATT-AAAATAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT-AGT
* * * * * * * *
37465885 AGATCTTATTTCTCT-AAAGTTACAGTAGAGTAGATCGCATC-AG-
1 A-ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** *** * *
37465928 -GTCTTATCTCCCTAAGATTACAGTGGAATAGACCAAAG-AATT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * ** *
37465970 CCAGATCATATCTCTC-GAAGA-AATAGTGGAGCTA-ATCGAAAATGGT
1 --A-ATCTTATCTCCCTG-AGATTACAGTGGAGC-AGATTGAAGCTAGT
* ** * *
37466016 GAATCTCATCTCCCTGAGATTACAACGGAGTAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * ** *
37466061 AATCCTT-TTTTCCTGAGATTATAGTGGAACAAATT-AAAATAAAGG
1 AAT-CTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37466106 AA-CTTATCT-CTTTAAATTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** * * **
37466147 -GTCTTATCTCCCTGAGATTAAAGTGGAATAGACTGAAGAATTCT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CTAGT
* * * * ** *
37466191 AGATCTTATCTCCCTAAGCA--ATAGTTGAGCTA-ATCGAAAATGGT
1 A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
* * * *
37466235 GAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGC
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * **
37466280 AATCCTATTTCCCTGAGATTACAGTGGAACAGATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * *
37466324 AATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCGTATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** ** * *
37466366 -GTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAG-AATTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTA-GT
* * *
37466409 CAGATCTTATCTCCCTGAGATGACAGCGGAGCTGATTGAAGCTAGT
1 -A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * **
37466455 AATCCTATCTCCTTAAGATTACAGTGGAGC-GAATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAG-ATTGAAGCT--AGT
* * * * * * *
37466499 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** *
37466541 -GTCTTATCTCCTTGAGATTACAGTGGAATAGACTGAAG--AGTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG-T
* * * * * *
37466583 CCAGATCTTGTCTCCTTGAGCA--ATAGTGGAGAAGATCGAAGAC-GGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGCAGATTGAAG-CTAGT
* * * *
37466629 GAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * *
37466674 AATCCTATCTCCCTGAGATTACAGCGGAGTAAATTGAAGCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * **
37466718 AATCCTATTTCCCTGAGATTACAGTGGAGCGGA-TGAAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37466762 GATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** * * *
37466804 -GTCTTATCTTCCTGAGATTACAGTGGAATAGACTGAAG-AAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * ** ** *
37466846 CCAGATCTTATCTCCCTAAG-TAATAGTGGAGCTA-ATAAAAAATGGT
1 --A-ATCTTATCTCCCTGAGATTACAGTGGAGC-AGATTGAAGCTAGT
* * * *
37466892 GAATCTGATCTCCCTGAGATTACAGCGAAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * * ** **
37466937 AATCCTCTTTCCCTAAGATTACAGTGGAACGGA-AAAAAATACAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * * * * * *
37466981 GATCTTATCTCTCTGA-AGTTACAGTAGAGTATATCGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * * ** *** * *
37467023 -GTCTTATCTCCTTGAGATTACTGTGGAATAGACCAAAG-AATT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * ** *
37467065 CCAGATCTTATCTCTCTAAGCA--ATAGTTGAGCTA-ATTGAAAATGGT
1 --A-ATCTTATCTCCCTGAG-ATTACAGTGGAGC-AGATTGAAGCTAGT
* * *
37467111 GAATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * **
37467156 AATCCTATTTCCCT-ATGATTACAGTGGAAC-GAATT-AAAATAAAG-
1 AATCTTATCTCCCTGA-GATTACAGTGGAGCAG-ATTGAAGCT--AGT
* * * * * * * *
37467200 GATCTTATTTCTCTGA-AGTTACTGTAGAGTAGATTGCATC-AG-
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* ** ** *
37467242 -GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATA-T
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CTAGT
* * *
37467285 GAGATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAATCTAGT
1 -A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * **
37467331 AATCCTATTTCCCTAAGATTACAGTGGAACAGATTAAAAGAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAAGCTAGT
* * * * * * * *
37467375 GATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATC-AG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* ** ** * *
37467417 -GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAG-AATT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
** ** *
37467459 CCAGATCTTATCTCCCAAAGA--A-ATGTGGAGCTA-ATCT-AAATTGGT
1 --A-ATCTTATCTCCCTGAGATTACA-GTGGAGC-AGAT-TGAAGCTAGT
* * * *
37467504 GAATCTTATCTCCCTAAGATTACAGCGGAGCAGATTTAAGCCAGT
1 -AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* * * * * **
37467549 AATCCTATTTCCCTAAGATTACAGTGGAACGGATT-AAAATAAAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGT
* * * ** *
37467594 -ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCAAATC-A--
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGT
* * ** ** * * *
37467634 AGTCTTATGTCCCTGAGATTACAGTGGAATAGACCGAAGAATTGC
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CTAGT
* *
37467679 AATTGTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGT
1 AA-TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
* *
37467724 AATCCTATCTCCCTGAGATTACAGTGGAGCGGATT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATT
37467759 AAAATAAAGG
Statistics
Matches: 10221, Mismatches: 3484, Indels: 2174
0.64 0.22 0.14
Matches are distributed among these distances:
39 20 0.00
40 83 0.01
41 1607 0.16
42 190 0.02
43 385 0.04
44 5060 0.50
45 1718 0.17
46 1067 0.10
47 90 0.01
48 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
Found at i:37467777 original size:44 final size:43
Alignment explanation
Indices: 37467113--37467834 Score: 207
Period size: 44 Copynumber: 16.6 Consensus size: 43
37467103 AAAATGGTGA
* * * *** *
37467113 ATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAG-G
* * *
37467157 ATCCTATTTCCCT-ATGATTACAGTGGAAC-GAATTAAAATAAAGG
1 ATCTTATCTCCCTGA-GATTACAGTGGAGCAG-ATTAAAAT-AAGG
* * * * * ** *
37467201 ATCTTATTTCTCTGA-AGTTACTGTAGAGTAGATT-GCATCAGG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATAAGG
** ** *
37467243 -TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATATGAG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AATAAG-G
* * * * *
37467288 ATCTTATCTCCCTGAGATTATAGCGGAGCAGATT-GAATCTAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT-AAG-G
* * * * *
37467332 ATCCTATTTCCCTAAGATTACAGTGGAACAGATTAAAAGAAAGG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAA-TAAGG
* * * * *** *
37467376 ATCTTATCTCTCTGAAATTACAGTAGAGTAGA-TCGCATCAGG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAGG
** ** *
37467418 -TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCA-G
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA-T-AAGG
** **
37467463 ATCTTATCTCCCAAAGA--A-ATGTGGAGCTA-ATCT-AAATTGGTG
1 ATCTTATCTCCCTGAGATTACA-GTGGAGC-AGAT-TAAAATAAG-G
* * * *** *
37467505 AATCTTATCTCCCTAAGATTACAGCGGAGCAGATTTAAGCCAGTA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAG-G
* * * * * *
37467550 ATCCTATTTCCCTAAGATTACAGTGGAACGGATTAAAATAAAGT
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT-AAGG
* * * *
37467594 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-TCAAATCAA-G
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAAT-AAGG
* ** ** * *
37467636 -TCTTATGTCCCTGAGATTACAGTGGAATAGACCGAAGAAT-TGCA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AATAAG-G
* * ** *
37467680 ATTGTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCT-AGTA
1 A-TCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAAG-G
* *
37467725 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT-AAGG
* *** *
37467769 ATCTTATCT--CTGA-AGTTACAGTAGAGCAGA-TCGTATCAGG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATAAGG
37467809 -TCTTATCTCCCTGAGATTACAGTGGA
1 ATCTTATCTCCCTGAGATTACAGTGGA
37467835 ATAGACCAAA
Statistics
Matches: 488, Mismatches: 141, Indels: 101
0.67 0.19 0.14
Matches are distributed among these distances:
39 8 0.02
40 3 0.01
41 94 0.19
42 29 0.06
43 40 0.08
44 209 0.43
45 33 0.07
46 72 0.15
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (43 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAGG
Found at i:37467884 original size:173 final size:174
Alignment explanation
Indices: 37467508--37467894 Score: 510
Period size: 173 Copynumber: 2.2 Consensus size: 174
37467498 ATTGGTGAAT
* * *
37467508 CTTATCTCCCTA-AGATTACAGCGGAGCAGATTTAAGCCAGTAATCCTATTTCCCTAAGATTACA
1 CTTATCTCCC-AGAGAATACAGCGGAGCAGATTAAAGCCAGTAATCCTATCTCCCTAAGATTACA
* *
37467572 GTGGAACGGATTAAAATAAAGTATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCAAATCAAGT
65 GTGGAACGGATTAAAATAAAGGATCTTA-CTCTCTGAAGTTACAGTAGAGCAGATCAAATCAAGT
* * *
37467637 CTTATGTCCCTGAGATTACAGTGGAATAGACCGAAGAATTGCAATT
129 CTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTGCAATC
* * * * * *
37467683 GTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
1 CTTATCTCCCAGAGAATACAGCGGAGCAGATTAAAGCCAGTAATCCTATCTCCCTAAGATTACAG
* ** *
37467748 TGGAGCGGATTAAAATAAAGGATCTTA-TCTCTGAAGTTACAGTAGAGCAGATCGTATCAGGTCT
66 TGGAACGGATTAAAATAAAGGATCTTACTCTCTGAAGTTACAGTAGAGCAGATCAAATCAAGTCT
**
37467812 TATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTTAGA-C
131 TATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTGCA-ATC
* ** *
37467856 CTTATCTCCCAGATAATGTAGTGGAGCAGATTAAAGCCA
1 CTTATCTCCCAGAGAATACAGCGGAGCAGATTAAAGCCA
37467895 CAACAGCGAA
Statistics
Matches: 184, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
173 100 0.54
174 1 0.01
175 83 0.45
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (174 bp):
CTTATCTCCCAGAGAATACAGCGGAGCAGATTAAAGCCAGTAATCCTATCTCCCTAAGATTACAG
TGGAACGGATTAAAATAAAGGATCTTACTCTCTGAAGTTACAGTAGAGCAGATCAAATCAAGTCT
TATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTGCAATC
Found at i:37467942 original size:50 final size:49
Alignment explanation
Indices: 37467883--37468021 Score: 156
Period size: 50 Copynumber: 2.8 Consensus size: 49
37467873 GTAGTGGAGC
* * *
37467883 AGATTAAAGCCACAACAGCGAATCTTGCTTCTCCGACATTGCAGTC-AAGA
1 AGATTAAAGCTACAACAGTGAATCTTGCTTC-CCGACATTGCAG-CGAACA
* *
37467933 AGATTAAAGCTACAACAGTGAATCTTACTTCCCAGATATTGCAGCGGAACA
1 AGATTAAAGCTACAACAGTGAATCTTGCTTCCC-GACATTGCAGC-GAACA
**
37467984 A-ATTAAAGCTACAATGGTGAATCTTGCTTCCCCGACAT
1 AGATTAAAGCTACAACAGTGAATCTTGCTT-CCCGACAT
37468022 CACATTTACG
Statistics
Matches: 76, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
49 3 0.04
50 66 0.87
51 7 0.09
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (49 bp):
AGATTAAAGCTACAACAGTGAATCTTGCTTCCCGACATTGCAGCGAACA
Found at i:37469521 original size:16 final size:13
Alignment explanation
Indices: 37469490--37469516 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37469480 GTATTTAGTA
37469490 TTATTTGTAATAT
1 TTATTTGTAATAT
37469503 TTATTTGTAATAT
1 TTATTTGTAATAT
37469516 T
1 T
37469517 GTTTAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
TTATTTGTAATAT
Found at i:37469877 original size:17 final size:19
Alignment explanation
Indices: 37469857--37469891 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
37469847 ATTTTAATAT
37469857 ATGTA-TAT-ATTTATAAA
1 ATGTATTATAATTTATAAA
37469874 ATGTATTATAATTTATAA
1 ATGTATTATAATTTATAA
37469892 TTTATAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 3 0.19
19 8 0.50
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (19 bp):
ATGTATTATAATTTATAAA
Found at i:37488823 original size:50 final size:50
Alignment explanation
Indices: 37488729--37488851 Score: 138
Period size: 50 Copynumber: 2.5 Consensus size: 50
37488719 ATTGAGGTTC
* * * * *
37488729 TGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGA
1 TGAGAGGTCCCACGTAAGACCATGTCTAGGACATGACATGGGCACCGAGA
* * * *
37488779 TGAGAGGTCCCCCGTAAGACTATGTCTAGGATATGACATGGGCACCGATA
1 TGAGAGGTCCCACGTAAGACCATGTCTAGGACATGACATGGGCACCGAGA
** *
37488829 TGAGAACTCCCATGTAAGACCAT
1 TGAGAGGTCCCACGTAAGACCAT
37488852 ATATGGGATA
Statistics
Matches: 59, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 59 1.00
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.21
Consensus pattern (50 bp):
TGAGAGGTCCCACGTAAGACCATGTCTAGGACATGACATGGGCACCGAGA
Found at i:37495796 original size:20 final size:20
Alignment explanation
Indices: 37495771--37495819 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
37495761 TGAGTTATTT
37495771 AAGTAAGCAAGTAAGTAAAG
1 AAGTAAGCAAGTAAGTAAAG
37495791 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAG
37495811 AAG-AAGCAA
1 AAGTAAGCAA
37495820 AGACCATGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 5 0.19
20 22 0.81
ACGTcount: A:0.57, C:0.04, G:0.27, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAG
Found at i:37499898 original size:33 final size:34
Alignment explanation
Indices: 37499847--37499921 Score: 116
Period size: 33 Copynumber: 2.2 Consensus size: 34
37499837 AAATTTAAAC
*
37499847 AAATTAATTACTAACACTTATTTAAGTTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
37499881 AAATTAATT-CTAACACTTATTTGAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
37499914 AATTTAAT
1 AAATTAAT
37499922 AAACTAACTC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 29 0.76
34 9 0.24
ACGTcount: A:0.43, C:0.12, G:0.07, T:0.39
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTGAACTA
Found at i:37508431 original size:4 final size:4
Alignment explanation
Indices: 37508422--37508456 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
37508412 TATTTTTATT
37508422 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
37508457 TTACTTAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:37508431 original size:16 final size:16
Alignment explanation
Indices: 37508410--37508476 Score: 64
Period size: 16 Copynumber: 4.1 Consensus size: 16
37508400 GTTGTAAAGT
37508410 TTTATTTTTATTTTTA
1 TTTATTTTTATTTTTA
*
37508426 TTTATTTATT-TATTTA
1 TTTATTT-TTATTTTTA
37508442 TTTATTTATTTATTTTTA
1 TTTA-TT-TTTATTTTTA
* * *
37508460 CTTAGTTTAATTTTTA
1 TTTATTTTTATTTTTA
37508476 T
1 T
37508477 GTAAATATTC
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
16 25 0.61
17 7 0.17
18 9 0.22
ACGTcount: A:0.22, C:0.01, G:0.01, T:0.75
Consensus pattern (16 bp):
TTTATTTTTATTTTTA
Found at i:37509022 original size:25 final size:25
Alignment explanation
Indices: 37508988--37509037 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
37508978 AAATCCCCAA
37508988 TTTCTAGGGTTCTTGCCGATTCATC
1 TTTCTAGGGTTCTTGCCGATTCATC
*
37509013 TTTCTAGGGTTCTTGTCGATTCATC
1 TTTCTAGGGTTCTTGCCGATTCATC
37509038 CATACTCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.12, C:0.22, G:0.20, T:0.46
Consensus pattern (25 bp):
TTTCTAGGGTTCTTGCCGATTCATC
Found at i:37524140 original size:15 final size:15
Alignment explanation
Indices: 37524120--37524153 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
37524110 ATCCATTTCG
37524120 TATATCTATATATCA
1 TATATCTATATATCA
37524135 TATATCTATATATCA
1 TATATCTATATATCA
37524150 TATA
1 TATA
37524154 ACACCATTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.47
Consensus pattern (15 bp):
TATATCTATATATCA
Found at i:37529882 original size:49 final size:47
Alignment explanation
Indices: 37529661--37530014 Score: 511
Period size: 47 Copynumber: 7.6 Consensus size: 47
37529651 CCCTTCGGGA
* * * * * *
37529661 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37529707 ----TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37529750 CTCATCACATATATACACTTCCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37529797 CTTATCACATATATACACTTTCACATTCATCCCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37529844 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37529893 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37529942 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37529989 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
37530015 CACAATTATC
Statistics
Matches: 282, Mismatches: 19, Indels: 13
0.90 0.06 0.04
Matches are distributed among these distances:
42 36 0.13
47 153 0.54
49 93 0.33
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37529890 original size:96 final size:94
Alignment explanation
Indices: 37529661--37530014 Score: 511
Period size: 96 Copynumber: 3.8 Consensus size: 94
37529651 CCCTTCGGGA
* * * * * *
37529661 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-----TCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
37529721 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
37529750 CTCATCACATATATACACTTCCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
37529815 TTTCACATTCATCCCATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
37529844 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
37529909 ACACTTTCACATTCATCACATTGGCCATTCGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
37529942 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
37530007 ATTCACAT
66 TTTCACAT
37530015 CACAATTATC
Statistics
Matches: 238, Mismatches: 18, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
89 37 0.16
94 65 0.27
96 92 0.39
98 44 0.18
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:37537837 original size:27 final size:27
Alignment explanation
Indices: 37537780--37537837 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
37537770 GTCTCAACCT
*
37537780 TTTGAAGTTATGTGCAATGCAAGGGAC
1 TTTGAAGTTATGTGCAATGCAAGGGAA
*
37537807 TTTGAAGTTATGTGCAATGCAAGTGAA
1 TTTGAAGTTATGTGCAATGCAAGGGAA
37537834 TTTG
1 TTTG
37537838 TTATGCATAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.29, C:0.09, G:0.28, T:0.34
Consensus pattern (27 bp):
TTTGAAGTTATGTGCAATGCAAGGGAA
Found at i:37543492 original size:27 final size:26
Alignment explanation
Indices: 37543461--37544231 Score: 617
Period size: 27 Copynumber: 28.7 Consensus size: 26
37543451 TGGGCCTTAG
*
37543461 AATGACCGAAATACCCCTGATGGGTAA
1 AATGACCGAAATA-CCCTGAAGGGTAA
* *
37543488 AATGACTGAAATACCCTCGAAAGGTAA
1 AATGACCGAAATACCCT-GAAGGGTAA
* *
37543515 AATGACCAAAATAACCTCGAAGGGTAA
1 AATGACCGAAATACCCT-GAAGGGTAA
* *
37543542 AATGGCCGAAATACCCTCAAAGGGTAA
1 AATGACCGAAATACCCT-GAAGGGTAA
*
37543569 AATGATCGAAATACCCTCGAAGGGTAA
1 AATGACCGAAATACCCT-GAAGGGTAA
* *
37543596 AATGACCAAAATACCCCTAAAGGGTAA
1 AATGACCGAAATA-CCCTGAAGGGTAA
*
37543623 AATGATCGAAATACCCTCGAAGGGTAA
1 AATGACCGAAATACCCT-GAAGGGTAA
* **
37543650 AATCATTGAAATACTGCC-GAAGGGTAA
1 AATGACCGAAATAC--CCTGAAGGGTAA
* * *
37543677 AACGATCGAAATACCCTTAAAGGGTAA
1 AATGACCGAAATACCC-TGAAGGGTAA
* *
37543704 AATGATCGAAATACCCTCGAAAGGTAA
1 AATGACCGAAATACCCT-GAAGGGTAA
* * *
37543731 AATAACCAAAATACCCTGATGGGTAA
1 AATGACCGAAATACCCTGAAGGGTAA
*
37543757 AATGACCAAAATACCCTCGAAGGGTAA
1 AATGACCGAAATACCCT-GAAGGGTAA
*
37543784 AATGACCAAAATACCCTCGAAGGGTAA
1 AATGACCGAAATACCCT-GAAGGGTAA
* * * *
37543811 AATAACCAAAATACCCCCGAAAGGTAA
1 AATGACCGAAATA-CCCTGAAGGGTAA
* * *
37543838 TATGATCGAAATACCCTCAAAGGGTAA
1 AATGACCGAAATACCCT-GAAGGGTAA
* * * * *
37543865 AATCACTGAAATTCCCCCGATGGGTAA
1 AATGACCGAAA-TACCCTGAAGGGTAA
** * *
37543892 AATGACTAAAATACCATCGATGGGTAA
1 AATGACCGAAATACCCT-GAAGGGTAA
* * * *
37543919 AATAATCGAAATACCGTCGAATGGTAA
1 AATGACCGAAATACCCT-GAAGGGTAA
** *
37543946 AATGACTAAAATACCCCCGAAGGGTAA
1 AATGACCGAAATA-CCCTGAAGGGTAA
** **
37543973 AATGATTGAAATACCCCCAAAGGGTAA
1 AATGACCGAAATA-CCCTGAAGGGTAA
* *
37544000 AATGATCGAAATACCCCCGAAGGGTAA
1 AATGACCGAAATA-CCCTGAAGGGTAA
** ***
37544027 AATGATTGAAATACCCTCGACTCGTAA
1 AATGACCGAAATACCCT-GAAGGGTAA
* *
37544054 AATGATCGAAATACCCCTGATGGGTAA
1 AATGACCGAAATA-CCCTGAAGGGTAA
* * *
37544081 AATGATCGAAATAGCCTCAATGGGTAA
1 AATGACCGAAATACCCTGAA-GGGTAA
* * *
37544108 AATGATCGAAATACCTCCGATGGGTAA
1 AATGACCGAAATACC-CTGAAGGGTAA
* ** *
37544135 AATGACCAAAATACCCCCAAAAGGTAA
1 AATGACCGAAATA-CCCTGAAGGGTAA
37544162 AATGACCGAAATACCCCTGAAGGGTAA
1 AATGACCGAAATA-CCCTGAAGGGTAA
* *
37544189 AATGACTGAAATACACTGAAGGGTAA
1 AATGACCGAAATACCCTGAAGGGTAA
* * *
37544215 AATTACTGATATACCCT
1 AATGACCGAAATACCCT
37544232 TAAGAGCCGA
Statistics
Matches: 617, Mismatches: 108, Indels: 39
0.81 0.14 0.05
Matches are distributed among these distances:
25 2 0.00
26 71 0.12
27 521 0.84
28 21 0.03
29 2 0.00
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.19
Consensus pattern (26 bp):
AATGACCGAAATACCCTGAAGGGTAA
Found at i:37543543 original size:54 final size:54
Alignment explanation
Indices: 37543461--37544217 Score: 709
Period size: 54 Copynumber: 14.1 Consensus size: 54
37543451 TGGGCCTTAG
* *
37543461 AATGACCGAAATACCC-CTGATGGGTAAAATGACTGAAATACCCTCGAAAGGTAA
1 AATGATCGAAATACCCTC-GAAGGGTAAAATGACTGAAATACCCTCGAAAGGTAA
* * * * *
37543515 AATGACCAAAATAACCTCGAAGGGTAAAATGGCCGAAATACCCTC-AAAGGGTAA
1 AATGATCGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTCGAAA-GGTAA
** *
37543569 AATGATCGAAATACCCTCGAAGGGTAAAATGACCAAAATACCC-CTAAAGGGTAA
1 AATGATCGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTCGAAA-GGTAA
* * * *
37543623 AATGATCGAAATACCCTCGAAGGGTAAAATCATTGAAATACTGC-CGAAGGGTAA
1 AATGATCGAAATACCCTCGAAGGGTAAAATGACTGAAATAC-CCTCGAAAGGTAA
* **
37543677 AACGATCGAAATACCCTTAAAGGGTAAAATGA-TCGAAATACCCTCGAAAGGTAA
1 AATGATCGAAATACCCTCGAAGGGTAAAATGACT-GAAATACCCTCGAAAGGTAA
* * * * ** *
37543731 AATAACCAAAATACCCT-GATGGGTAAAATGACCAAAATACCCTCGAAGGGTAA
1 AATGATCGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTCGAAAGGTAA
* * * ** *
37543784 AATGACCAAAATACCCTCGAAGGGTAAAATAACCAAAATACCCCCGAAAGGTAA
1 AATGATCGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTCGAAAGGTAA
* * * * * **
37543838 TATGATCGAAATACCCTCAAAGGGTAAAATCACTGAAATTCCCCCGATGGGTAA
1 AATGATCGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTCGAAAGGTAA
* * * * * *
37543892 AATGA-CTAAAATACCATCGATGGGTAAAAT-AATCGAAATACCGTCGAATGGTAA
1 AATGATC-GAAATACCCTCGAAGGGTAAAATGACT-GAAATACCCTCGAAAGGTAA
* * * *
37543946 AATGA-CTAAAATACCCCCGAAGGGTAAAATGATTGAAATACCC-CCAAAGGGTAA
1 AATGATC-GAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTCGAAA-GGTAA
* * ***
37544000 AATGATCGAAATACCCCCGAAGGGTAAAATGATTGAAATACCCTCGACTCGTAA
1 AATGATCGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTCGAAAGGTAA
* * *
37544054 AATGATCGAAATACCC-CTGATGGGTAAAATGA-TCGAAATAGCCTC-AATGGGTAA
1 AATGATCGAAATACCCTC-GAAGGGTAAAATGACT-GAAATACCCTCGAA-AGGTAA
* ** * *
37544108 AATGATCGAAATA-CCTCCGATGGGTAAAATGACCAAAATACCCCCAAAAGGTAA
1 AATGATCGAAATACCCT-CGAAGGGTAAAATGACTGAAATACCCTCGAAAGGTAA
* * *
37544162 AATGACCGAAATACCC-CTGAAGGGTAAAATGACTGAAATACACT-GAAGGGTAA
1 AATGATCGAAATACCCTC-GAAGGGTAAAATGACTGAAATACCCTCGAAAGGTAA
37544215 AAT
1 AAT
37544218 TACTGATATA
Statistics
Matches: 592, Mismatches: 88, Indels: 47
0.81 0.12 0.06
Matches are distributed among these distances:
53 74 0.12
54 503 0.85
55 15 0.03
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.18
Consensus pattern (54 bp):
AATGATCGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTCGAAAGGTAA
Found at i:37543601 original size:81 final size:81
Alignment explanation
Indices: 37543461--37544217 Score: 692
Period size: 81 Copynumber: 9.4 Consensus size: 81
37543451 TGGGCCTTAG
* * * *
37543461 AATGACCGAAATACCC-CTGATGGGTAAAATGA-CTGAAATACCCTCGAAAGGTAAAATGACCAA
1 AATGACCGAAATACCCTC-GAAGGGTAAAATGATC-GAAATACCCTCGAAGGGTAAAATGATCGA
37543524 AATAACCTCGAAGGGTAA
64 AATAACCTCGAAGGGTAA
* * * *
37543542 AATGGCCGAAATACCCTCAAAGGGTAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCAAAA
1 AATGACCGAAATACCCTCGAAGGGTAAAATGATCGAAATACCCTCGAAGGGTAAAATGATCGAAA
* *
37543607 T-ACCCCTAAAGGGTAA
66 TAACCTC-GAAGGGTAA
* * * * *
37543623 AATGATCGAAATACCCTCGAAGGGTAAAATCATTGAAATACTGC-CGAAGGGTAAAACGATCGAA
1 AATGACCGAAATACCCTCGAAGGGTAAAATGATCGAAATAC-CCTCGAAGGGTAAAATGATCGAA
* **
37543687 ATACCCTTAAAGGGTAA
65 ATAACCTCGAAGGGTAA
* * * * * * * *
37543704 AATGATCGAAATACCCTCGAAAGGTAAAATAACCAAAATACCCT-GATGGGTAAAATGACCAAAA
1 AATGACCGAAATACCCTCGAAGGGTAAAATGATCGAAATACCCTCGAAGGGTAAAATGATCGAAA
*
37543768 TACCCTCGAAGGGTAA
66 TAACCTCGAAGGGTAA
* * * * * * *
37543784 AATGACCAAAATACCCTCGAAGGGTAAAATAACCAAAATACCCCCGAAAGGTAATATGATCGAAA
1 AATGACCGAAATACCCTCGAAGGGTAAAATGATCGAAATACCCTCGAAGGGTAAAATGATCGAAA
* *
37543849 TACCCTCAAAGGGTAA
66 TAACCTCGAAGGGTAA
* * * * * * * * *
37543865 AATCACTGAAATTCCCCCGATGGGTAAAATGA-CTAAAATACCATCGATGGGTAAAATAATCGAA
1 AATGACCGAAATACCCTCGAAGGGTAAAATGATC-GAAATACCCTCGAAGGGTAAAATGATCGAA
*
37543929 AT-ACCGTCGAATGGTAA
65 ATAACC-TCGAAGGGTAA
** * * * *
37543946 AATGACTAAAATACCCCCGAAGGGTAAAATGATTGAAATACCCCCAAAGGGTAAAATGATCGAAA
1 AATGACCGAAATACCCTCGAAGGGTAAAATGATCGAAATACCCTCGAAGGGTAAAATGATCGAAA
* *
37544011 TACCCCCGAAGGGTAA
66 TAACCTCGAAGGGTAA
** *** *
37544027 AATGATTGAAATACCCTCGACTCGTAAAATGATCGAAATACCC-CTGATGGGTAAAATGATCGAA
1 AATGACCGAAATACCCTCGAAGGGTAAAATGATCGAAATACCCTC-GAAGGGTAAAATGATCGAA
*
37544091 ATAGCCTC-AATGGGTAA
65 ATAACCTCGAA-GGGTAA
* * * * * * * *
37544108 AATGATCGAAATA-CCTCCGATGGGTAAAATGACCAAAATACCCCCAAAAGGTAAAATGACCGAA
1 AATGACCGAAATACCCT-CGAAGGGTAAAATGATCGAAATACCCTCGAAGGGTAAAATGATCGAA
*
37544172 AT-ACCCCTGAAGGGTAA
65 ATAACCTC-GAAGGGTAA
* *
37544189 AATGACTGAAATACACT-GAAGGGTAAAAT
1 AATGACCGAAATACCCTCGAAGGGTAAAAT
37544218 TACTGATATA
Statistics
Matches: 561, Mismatches: 97, Indels: 37
0.81 0.14 0.05
Matches are distributed among these distances:
80 98 0.17
81 451 0.80
82 12 0.02
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.18
Consensus pattern (81 bp):
AATGACCGAAATACCCTCGAAGGGTAAAATGATCGAAATACCCTCGAAGGGTAAAATGATCGAAA
TAACCTCGAAGGGTAA
Found at i:37544648 original size:28 final size:28
Alignment explanation
Indices: 37544608--37544733 Score: 135
Period size: 28 Copynumber: 4.4 Consensus size: 28
37544598 ACTACACTGT
*
37544608 ACTGTTATTGTATTGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
37544636 ACTGTTACTGTATTGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
* * **
37544664 ACTATTACTATATCAGGCTAAGGCCACAC
1 ACTGTTACTGTATTGGGCTAAGGCC-CAC
* * * *
37544693 TGTACTGTTACTGAATAGGGCTCAGGCCCAG
1 ---ACTGTTACTGTATTGGGCTAAGGCCCAC
37544724 ACTGTTACTG
1 ACTGTTACTG
37544734 CATGTTGTAT
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
28 58 0.71
29 3 0.04
31 2 0.02
32 19 0.23
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.29
Consensus pattern (28 bp):
ACTGTTACTGTATTGGGCTAAGGCCCAC
Found at i:37563378 original size:30 final size:30
Alignment explanation
Indices: 37563344--37563404 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
37563334 CAACGCATAG
37563344 AATAACCACAATCTATTATCAATCTAGAGT
1 AATAACCACAATCTATTATCAATCTAGAGT
37563374 AATAACCACAATCTATTATCAATCTAGAGT
1 AATAACCACAATCTATTATCAATCTAGAGT
37563404 A
1 A
37563405 TCGATCTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.30
Consensus pattern (30 bp):
AATAACCACAATCTATTATCAATCTAGAGT
Found at i:37564997 original size:142 final size:142
Alignment explanation
Indices: 37564741--37565021 Score: 553
Period size: 142 Copynumber: 2.0 Consensus size: 142
37564731 CGGGATTAAG
37564741 ATGTACTTACCAATTCTTGAAAAAGATTAAGGATATTATTTAACGATAGAGCAAGAAATCAAGAA
1 ATGTACTTACCAATTCTTGAAAAAGATTAAGGATATTATTTAACGATAGAGCAAGAAATCAAGAA
37564806 GCAAAGTTGATTTGGTATGAGAATGAAAATATTCAATACAAAAAGATGGAAAATATGATGTAATG
66 GCAAAGTTGATTTGGTATGAGAATGAAAATATTCAATACAAAAAGATGGAAAATATGATGTAATG
37564871 TAACACCCCTAA
131 TAACACCCCTAA
*
37564883 ATGTACTTACCAATTCTTGAAAAAGATTAAGGATATTATTTAACGATAGAGCAAGAAATCCAGAA
1 ATGTACTTACCAATTCTTGAAAAAGATTAAGGATATTATTTAACGATAGAGCAAGAAATCAAGAA
37564948 GCAAAGTTGATTTGGTATGAGAATGAAAATATTCAATACAAAAAGATGGAAAATATGATGTAATG
66 GCAAAGTTGATTTGGTATGAGAATGAAAATATTCAATACAAAAAGATGGAAAATATGATGTAATG
37565013 TAACACCCC
131 TAACACCCC
37565022 AAACCCATAT
Statistics
Matches: 138, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
142 138 1.00
ACGTcount: A:0.45, C:0.11, G:0.17, T:0.27
Consensus pattern (142 bp):
ATGTACTTACCAATTCTTGAAAAAGATTAAGGATATTATTTAACGATAGAGCAAGAAATCAAGAA
GCAAAGTTGATTTGGTATGAGAATGAAAATATTCAATACAAAAAGATGGAAAATATGATGTAATG
TAACACCCCTAA
Found at i:37565128 original size:22 final size:21
Alignment explanation
Indices: 37565101--37565141 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
37565091 TTAGTACCTC
37565101 TACATATACATGGCATAATTCA
1 TACATATACAT-GCATAATTCA
37565123 TACATATACATGCATAATT
1 TACATATACATGCATAATT
37565142 TTCCTTAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.34
Consensus pattern (21 bp):
TACATATACATGCATAATTCA
Found at i:37574644 original size:41 final size:41
Alignment explanation
Indices: 37574599--37574679 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
37574589 TACCGGAGTG
* *
37574599 TAAATAGGGGCACGTATATGCAATTCAGGGGTACCAAAGTA
1 TAAATAAGGGCACGCATATGCAATTCAGGGGTACCAAAGTA
* * *
37574640 TAAATAAGGGCACGCATGTGTAATTTAGGGGTACCAAAGT
1 TAAATAAGGGCACGCATATGCAATTCAGGGGTACCAAAGT
37574680 CCAAACGGGC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.23
Consensus pattern (41 bp):
TAAATAAGGGCACGCATATGCAATTCAGGGGTACCAAAGTA
Found at i:37574746 original size:33 final size:33
Alignment explanation
Indices: 37574702--37574764 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
37574692 ACGCATGTAC
*
37574702 AATTCAAGGGTATCGAAGTCTAAATAGGGGTGT
1 AATTCAAGGGTATCGAAGTCTAAACAGGGGTGT
*
37574735 AATTCAGGGGTATCGAAGTCTAAACAGGGG
1 AATTCAAGGGTATCGAAGTCTAAACAGGGG
37574765 CACGTATGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.33, C:0.11, G:0.32, T:0.24
Consensus pattern (33 bp):
AATTCAAGGGTATCGAAGTCTAAACAGGGGTGT
Found at i:37574779 original size:74 final size:74
Alignment explanation
Indices: 37574657--37574795 Score: 172
Period size: 74 Copynumber: 1.9 Consensus size: 74
37574647 GGGCACGCAT
* *
37574657 GTGTAATTTAGGGGTACCAAAGTCCAAACGGGCACACGCATGTACAATTCAAGGGTATCGAAGTC
1 GTGTAATTCAGGGGTACCAAAGTCCAAACGGGCACACGCATGTACAATTCAAGGGTATCAAAGTC
37574722 TAAATAGGG
66 TAAATAGGG
* * * * * * * *
37574731 GTGTAATTCAGGGGTATCGAAGTCTAAACAGGG-GCACGTATGTGCAATTTAGGGGTATCAAAGT
1 GTGTAATTCAGGGGTACCAAAGTCCAAAC-GGGCACACGCATGTACAATTCAAGGGTATCAAAGT
37574795 C
65 C
37574796 CAAGCAAGGG
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
74 51 0.94
75 3 0.06
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.24
Consensus pattern (74 bp):
GTGTAATTCAGGGGTACCAAAGTCCAAACGGGCACACGCATGTACAATTCAAGGGTATCAAAGTC
TAAATAGGG
Found at i:37574807 original size:41 final size:41
Alignment explanation
Indices: 37574735--37574821 Score: 113
Period size: 41 Copynumber: 2.1 Consensus size: 41
37574725 ATAGGGGTGT
* * * *
37574735 AATTCAGGGGTATCGAAGTCTAAACAGGGGCACGTAT-GTGC
1 AATTTAGGGGTATCAAAGTCCAAACAAGGGCACGT-TCGTGC
*
37574776 AATTTAGGGGTATCAAAGTCCAAGCAAGGGCACGTTCGTGC
1 AATTTAGGGGTATCAAAGTCCAAACAAGGGCACGTTCGTGC
37574817 AATTT
1 AATTT
37574822 GTAACAGCCC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 1 0.03
41 39 0.98
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (41 bp):
AATTTAGGGGTATCAAAGTCCAAACAAGGGCACGTTCGTGC
Found at i:37575992 original size:50 final size:48
Alignment explanation
Indices: 37575924--37576090 Score: 172
Period size: 51 Copynumber: 3.3 Consensus size: 48
37575914 AAAGTGAAAG
*
37575924 TGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAA
1 TGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGAA
* * * * *
37575973 TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACTGGA
1 TGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGAA
* ** *
37576022 TAGCTTCCATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATA
1 T-G-AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGA-A
37576075 TTGATGGTCACATGTG
1 -TGATGGTCACATGTG
37576091 CAGGCTATTA
Statistics
Matches: 92, Mismatches: 20, Indels: 10
0.75 0.16 0.08
Matches are distributed among these distances:
49 8 0.09
50 36 0.39
51 42 0.46
52 3 0.03
53 2 0.02
54 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (48 bp):
TGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGAA
Found at i:37576348 original size:16 final size:16
Alignment explanation
Indices: 37576327--37576358 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37576317 TGATTGAAAG
*
37576327 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
37576343 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
37576359 GCAACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:37582387 original size:16 final size:16
Alignment explanation
Indices: 37582366--37582397 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37582356 TGATTGAAAG
*
37582366 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
37582382 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
37582398 GCAATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:37594770 original size:34 final size:34
Alignment explanation
Indices: 37594691--37594763 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
37594681 TAATCGATAA
* * * *
37594691 TCAACCTATGAAACTTCTTCCCTTCTTGAAAAGC
1 TCAACCAATAAAACTTCTTCCCTTCTTCAAAAAC
*
37594725 TCAACCAATAAAACTTCTTTCCTTCTTCAAAAAC
1 TCAACCAATAAAACTTCTTCCCTTCTTCAAAAAC
37594759 TCAAC
1 TCAAC
37594764 TGATAAATCT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.34, C:0.30, G:0.04, T:0.32
Consensus pattern (34 bp):
TCAACCAATAAAACTTCTTCCCTTCTTCAAAAAC
Found at i:37596574 original size:21 final size:21
Alignment explanation
Indices: 37596535--37596574 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
37596525 ATATATCATG
*
37596535 CAAGACAATGTTTGAGGTAGA
1 CAAGAAAATGTTTGAGGTAGA
37596556 CAAGAAAAT-TTTGATGGTA
1 CAAGAAAATGTTTGA-GGTA
37596575 AATCAACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (21 bp):
CAAGAAAATGTTTGAGGTAGA
Found at i:37597893 original size:506 final size:506
Alignment explanation
Indices: 37596941--37597953 Score: 2008
Period size: 506 Copynumber: 2.0 Consensus size: 506
37596931 GTTCAGCCTA
37596941 ACTTTACCAGTCCAATGGAAATACCTCAAATTGCAGAGAGTGATAAAACCAACTTATGCCCTAGT
1 ACTTTACCAGTCCAATGGAAATACCTCAAATTGCAGAGAGTGATAAAACCAACTTATGCCCTAGT
*
37597006 TTTAAAGAATATCCAAAAGCTGATACTATTGGTAATAGTTCTAGAGTGGTCCTACTTGTTGCAGG
66 TTTAAAGAATATCCAAAAGCTGATACTATTGGTAATAGTTCTAGAGCGGTCCTACTTGTTGCAGG
37597071 TAAGATGAAGACTTTTGTTAATGATTCTGAAACCAAAGAAGAAAGTCCTACTATGATTGAAATAT
131 TAAGATGAAGACTTTTGTTAATGATTCTGAAACCAAAGAAGAAAGTCCTACTATGATTGAAATAT
37597136 TTTCTGGAATTGAGGTGGAGCCTTCTTTGAAAGGGTCTCCTAGAACTTCTCATGGAAATAATAGA
196 TTTCTGGAATTGAGGTGGAGCCTTCTTTGAAAGGGTCTCCTAGAACTTCTCATGGAAATAATAGA
37597201 AGCGTTGCTCTTAATGATATTCCTGTAGAAATATTGGTTTTTGATTGATCTGTTGTTTGTTTGAG
261 AGCGTTGCTCTTAATGATATTCCTGTAGAAATATTGGTTTTTGATTGATCTGTTGTTTGTTTGAG
37597266 TGGTATATCCTTGGACAGGTCAGAAATGCTTTTTATGTAAGAGGTATTTTACAGTAGTTGTTTTT
326 TGGTATATCCTTGGACAGGTCAGAAATGCTTTTTATGTAAGAGGTATTTTACAGTAGTTGTTTTT
37597331 AAGAGTTCCAAAGCTTCAGAAAACTTAAACAATCTTGGAGCTAGTTCTTTGGTGGTTGACTTGAA
391 AAGAGTTCCAAAGCTTCAGAAAACTTAAACAATCTTGGAGCTAGTTCTTTGGTGGTTGACTTGAA
37597396 ATTTACTTATGTTGCTACTTATCGAAACAGTAGAAATTAGGAAAGGAGTGG
456 ATTTACTTATGTTGCTACTTATCGAAACAGTAGAAATTAGGAAAGGAGTGG
*
37597447 ACTTTACCAGTCCAATGGAAATACCTCAAATTGCAGAGAGTGATAAAACCAACTTATGGCCTAGT
1 ACTTTACCAGTCCAATGGAAATACCTCAAATTGCAGAGAGTGATAAAACCAACTTATGCCCTAGT
37597512 TTTAAAGAATATCCAAAAGCTGATACTATTGGTAATAGTTCTAGAGCGGTCCTACTTGTTGCAGG
66 TTTAAAGAATATCCAAAAGCTGATACTATTGGTAATAGTTCTAGAGCGGTCCTACTTGTTGCAGG
37597577 TAAGATGAAGACTTTTGTTAATGATTCTGAAACCAAAGAAGAAAGTCCTACTATGATTGAAATAT
131 TAAGATGAAGACTTTTGTTAATGATTCTGAAACCAAAGAAGAAAGTCCTACTATGATTGAAATAT
37597642 TTTCTGGAATTGAGGTGGAGCCTTCTTTGAAAGGGTCTCCTAGAACTTCTCATGGAAATAATAGA
196 TTTCTGGAATTGAGGTGGAGCCTTCTTTGAAAGGGTCTCCTAGAACTTCTCATGGAAATAATAGA
37597707 AGCGTTGCTCTTAATGATATTCCTGTAGAAATATTGGTTTTTGATTGATCTGTTGTTTGTTTGAG
261 AGCGTTGCTCTTAATGATATTCCTGTAGAAATATTGGTTTTTGATTGATCTGTTGTTTGTTTGAG
37597772 TGGTATATCCTTGGACAGGTCAGAAATGCTTTTTATGTAAGAGGTATTTTACAGTAGTTGTTTTT
326 TGGTATATCCTTGGACAGGTCAGAAATGCTTTTTATGTAAGAGGTATTTTACAGTAGTTGTTTTT
37597837 AAGAGTTCCAAAGCTTCAGAAAACTTAAACAATCTTGGAGCTAGTTCTTTGGTGGTTGACTTGAA
391 AAGAGTTCCAAAGCTTCAGAAAACTTAAACAATCTTGGAGCTAGTTCTTTGGTGGTTGACTTGAA
37597902 ATTTACTTATGTTGCTACTTATCGAAACAGTAGAAATTAGGAAAGGAGTGG
456 ATTTACTTATGTTGCTACTTATCGAAACAGTAGAAATTAGGAAAGGAGTGG
37597953 A
1 A
37597954 GACTGTTGTG
Statistics
Matches: 505, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
506 505 1.00
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.34
Consensus pattern (506 bp):
ACTTTACCAGTCCAATGGAAATACCTCAAATTGCAGAGAGTGATAAAACCAACTTATGCCCTAGT
TTTAAAGAATATCCAAAAGCTGATACTATTGGTAATAGTTCTAGAGCGGTCCTACTTGTTGCAGG
TAAGATGAAGACTTTTGTTAATGATTCTGAAACCAAAGAAGAAAGTCCTACTATGATTGAAATAT
TTTCTGGAATTGAGGTGGAGCCTTCTTTGAAAGGGTCTCCTAGAACTTCTCATGGAAATAATAGA
AGCGTTGCTCTTAATGATATTCCTGTAGAAATATTGGTTTTTGATTGATCTGTTGTTTGTTTGAG
TGGTATATCCTTGGACAGGTCAGAAATGCTTTTTATGTAAGAGGTATTTTACAGTAGTTGTTTTT
AAGAGTTCCAAAGCTTCAGAAAACTTAAACAATCTTGGAGCTAGTTCTTTGGTGGTTGACTTGAA
ATTTACTTATGTTGCTACTTATCGAAACAGTAGAAATTAGGAAAGGAGTGG
Found at i:37599887 original size:17 final size:17
Alignment explanation
Indices: 37599867--37599901 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
37599857 AGAAACATAT
37599867 TTAGAATAGAAGTAAAC
1 TTAGAATAGAAGTAAAC
37599884 TTAGAATAGAAGTAAAC
1 TTAGAATAGAAGTAAAC
37599901 T
1 T
37599902 AACAATGGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.06, G:0.17, T:0.26
Consensus pattern (17 bp):
TTAGAATAGAAGTAAAC
Found at i:37601247 original size:22 final size:23
Alignment explanation
Indices: 37601203--37601247 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
37601193 AATCCTTACA
*
37601203 TTGCCTAAGATGAAAAAATGTGC
1 TTGCCTAAGATGAAAAAAGGTGC
**
37601226 TTGCCTAAG-TGAAGTAAGGTGC
1 TTGCCTAAGATGAAAAAAGGTGC
37601248 AAATGCATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (23 bp):
TTGCCTAAGATGAAAAAAGGTGC
Found at i:37604837 original size:18 final size:17
Alignment explanation
Indices: 37604811--37604845 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37604801 ACAAATACAT
37604811 AAAACACAAAAAAGAAAG
1 AAAACACAAAAAA-AAAG
*
37604829 AAAATACAAAAAAAAAG
1 AAAACACAAAAAAAAAG
37604846 GATAAACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.80, C:0.09, G:0.09, T:0.03
Consensus pattern (17 bp):
AAAACACAAAAAAAAAG
Found at i:37605737 original size:16 final size:17
Alignment explanation
Indices: 37605713--37605758 Score: 58
Period size: 16 Copynumber: 2.7 Consensus size: 17
37605703 ATAAAGTTGT
*
37605713 ATTGGAAATTTTGTTA-
1 ATTGAAAATTTTGTTAC
37605729 ATTGAAAATTTTGTTAGC
1 ATTGAAAATTTTGTTA-C
*
37605747 ATTAAAAATTTT
1 ATTGAAAATTTT
37605759 TAGACTAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 15 0.58
18 11 0.42
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.48
Consensus pattern (17 bp):
ATTGAAAATTTTGTTAC
Found at i:37616701 original size:10 final size:10
Alignment explanation
Indices: 37616661--37616699 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
37616651 TTAACATGTA
37616661 TAATTTTAAT
1 TAATTTTAAT
37616671 TAATTTTATAAT
1 TAA-TTT-TAAT
*
37616683 TAATTTTGAT
1 TAATTTTAAT
37616693 TAATTTT
1 TAATTTT
37616700 GAATATTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
10 13 0.50
11 6 0.23
12 7 0.27
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (10 bp):
TAATTTTAAT
Found at i:37627743 original size:3 final size:3
Alignment explanation
Indices: 37627735--37627780 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
37627725 GAGGATCCTA
37627735 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
37627781 TCCCACACAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:37630318 original size:11 final size:11
Alignment explanation
Indices: 37630297--37630336 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
37630287 AAACCATTTA
37630297 TTTCT-TCACT
1 TTTCTCTCACT
*
37630307 TCTCTCTCACT
1 TTTCTCTCACT
37630318 TTTCTCTCACT
1 TTTCTCTCACT
37630329 TTTCTCTC
1 TTTCTCTC
37630337 TTCACTCCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 4 0.15
11 23 0.85
ACGTcount: A:0.07, C:0.38, G:0.00, T:0.55
Consensus pattern (11 bp):
TTTCTCTCACT
Found at i:37630324 original size:13 final size:13
Alignment explanation
Indices: 37630306--37630342 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 13
37630296 ATTTCTTCAC
37630306 TTCTCTCTCAC-T
1 TTCTCTCTCACTT
37630318 TT-TCTCTCACTT
1 TTCTCTCTCACTT
37630330 TTCTCTCTTCACT
1 TTCTCTC-TCACT
37630343 CCCTTCCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 8 0.36
12 5 0.23
13 4 0.18
14 5 0.23
ACGTcount: A:0.08, C:0.38, G:0.00, T:0.54
Consensus pattern (13 bp):
TTCTCTCTCACTT
Found at i:37631808 original size:146 final size:143
Alignment explanation
Indices: 37631561--37631850 Score: 454
Period size: 146 Copynumber: 2.0 Consensus size: 143
37631551 AGGAAGGTTT
* * * *
37631561 AGGAAAAAAAATAGTAAACGTGAAGGAATTGTGGAAAATGAAAGAGGCGTGGGCAGTTGAAGAGA
1 AGGAAAAAAAATAGTAAACGTAAAGGAATTGAGGAAAATGAAAGAGGCGTGCGAAGTTGAAGAGA
* *
37631626 AGTAAATGGGGGTATTGGTGTTGATGGTTCAAAAAAGCTTGCAGAGTAAGTATTGTGGAATGAAA
66 AGTAAATGGGGGTATTGGTGTTGACGGTTCAAAAAAGCTTGCAGA-TAAGTATTGTAGAATGAAA
37631691 GAGGAAAAATAAAA
130 GAGGAAAAATAAAA
* *
37631705 AGGAAAAAGAAATTGTAAAACGTAAAGGAATTGAGGAAAATTAAAGAGGCGTGCGAAGTTGAAGA
1 AGGAAAAA-AAATAGT-AAACGTAAAGGAATTGAGGAAAATGAAAGAGGCGTGCGAAGTTGAAGA
* * *
37631770 GAAGTAAATGGGGGTATTGTTGTTGACGGTTCAGAAAAGCTTGCAGATAAGTTTTGTAGAATGAA
64 GAAGTAAATGGGGGTATTGGTGTTGACGGTTCAAAAAAGCTTGCAGATAAGTATTGTAGAATGAA
37631835 AGAGGAAAAATAAAA
129 AGAGGAAAAATAAAA
37631850 A
1 A
37631851 TGTTTTGGAG
Statistics
Matches: 133, Mismatches: 11, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
144 8 0.06
145 38 0.29
146 87 0.65
ACGTcount: A:0.44, C:0.04, G:0.30, T:0.21
Consensus pattern (143 bp):
AGGAAAAAAAATAGTAAACGTAAAGGAATTGAGGAAAATGAAAGAGGCGTGCGAAGTTGAAGAGA
AGTAAATGGGGGTATTGGTGTTGACGGTTCAAAAAAGCTTGCAGATAAGTATTGTAGAATGAAAG
AGGAAAAATAAAA
Found at i:37632347 original size:316 final size:316
Alignment explanation
Indices: 37631763--37632389 Score: 1076
Period size: 316 Copynumber: 2.0 Consensus size: 316
37631753 GCGTGCGAAG
* * * *
37631763 TTGAAGAGAAGTAAATGGGGGTATTGTTGTTGACGGTTCAGAAAAGCTTGCAGATAAGTTTTGTA
1 TTGAAGAGAAGTAAATGGCGGAATTGGTGTTGACGGTTAAGAAAAGCTTGCAGATAAGTTTTGTA
37631828 GAATGAAAGAGGAAAAATAAAAATGTTTTGGAGGGAACCCTAAAATGACCTAGCCCTAAAGCAAC
66 GAATGAAAGAGGAAAAATAAAAATGTTTTGGAGGGAACCCTAAAATGACCTAGCCCTAAAGCAAC
*
37631893 ACGTTTGGCATTTTCTTCATGGGCTACCTAATTAGCAGAATGGGCCCAACTGTCCAAAATCTTTT
131 ACGTTTGGCATTTTCTTCATGGGCTACCTAATTAGCAGAATGGGCCCAACTGTCCAAAATATTTT
* * * * *
37631958 CCTTAAACTGTTCTTTCTTGTCAGTCCTCATTTTCTCTTTCTTCAATATCCATTAACCCTGTTTT
196 CCTTAAACCGTTCTTTCTTGTCAATCCTCATTTTCTCTTGCTTCAATATCCAATAACCCTATTTT
* * *
37632023 CTATGGCAAAATTCTTTTTTGAAATGTTAGGGCAAACG-CCTCTTGGTACTAAATCA
261 CCATGGCAAAATTCTCTTTTGAAATGTTAGGGAAAACGACC-CTTGGTACTAAATCA
*
37632079 TTGAAGAGAAGTAAATGGCGGAATTGGTGTTGACGGTTAAGAAAAGCTTGCAGATAAGTTTTGTG
1 TTGAAGAGAAGTAAATGGCGGAATTGGTGTTGACGGTTAAGAAAAGCTTGCAGATAAGTTTTGTA
37632144 GAATGAAAGAGGAAAAATAAAAATGTTTTGGAGGGAACCCTAAAATGACCTAGCCCTAAAGCAAC
66 GAATGAAAGAGGAAAAATAAAAATGTTTTGGAGGGAACCCTAAAATGACCTAGCCCTAAAGCAAC
*
37632209 ACGTTTGGCATTTTCTTCATGGGCTACCTAATTAGTAGAATGGGCCCAACTGTCCAAAATATTTT
131 ACGTTTGGCATTTTCTTCATGGGCTACCTAATTAGCAGAATGGGCCCAACTGTCCAAAATATTTT
* *
37632274 CCTTGAACCGTTCTTTCTTGTCAATCCTCATTTTCTCTTGCTTCAATATCCAATAACCTTATTTT
196 CCTTAAACCGTTCTTTCTTGTCAATCCTCATTTTCTCTTGCTTCAATATCCAATAACCCTATTTT
*
37632339 CCATGGCAAAATTCTCTTTTGAAATGTTGGGGAAAACGACCCTTGGTACTA
261 CCATGGCAAAATTCTCTTTTGAAATGTTAGGGAAAACGACCCTTGGTACTA
37632390 CATCTAACAA
Statistics
Matches: 292, Mismatches: 18, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
316 290 0.99
317 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32
Consensus pattern (316 bp):
TTGAAGAGAAGTAAATGGCGGAATTGGTGTTGACGGTTAAGAAAAGCTTGCAGATAAGTTTTGTA
GAATGAAAGAGGAAAAATAAAAATGTTTTGGAGGGAACCCTAAAATGACCTAGCCCTAAAGCAAC
ACGTTTGGCATTTTCTTCATGGGCTACCTAATTAGCAGAATGGGCCCAACTGTCCAAAATATTTT
CCTTAAACCGTTCTTTCTTGTCAATCCTCATTTTCTCTTGCTTCAATATCCAATAACCCTATTTT
CCATGGCAAAATTCTCTTTTGAAATGTTAGGGAAAACGACCCTTGGTACTAAATCA
Found at i:37632581 original size:16 final size:16
Alignment explanation
Indices: 37632542--37632585 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
37632532 AAAAAAAATA
*
37632542 AAGATAGAAAAATTTTG
1 AAGATA-AAAAATCTTG
*
37632559 -AGCTAAAAAATCTTG
1 AAGATAAAAAATCTTG
37632574 AAGATAAAAAAT
1 AAGATAAAAAAT
37632586 GAGACCTCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.57, C:0.05, G:0.14, T:0.25
Consensus pattern (16 bp):
AAGATAAAAAATCTTG
Found at i:37641341 original size:22 final size:25
Alignment explanation
Indices: 37641300--37641344 Score: 69
Period size: 22 Copynumber: 1.9 Consensus size: 25
37641290 AATCGAAAAC
37641300 ATTAAACAACATAATATTTAAATAA
1 ATTAAACAACATAATATTTAAATAA
37641325 ATTAAAC-ACAT-AT-TTTAAAT
1 ATTAAACAACATAATATTTAAAT
37641345 CATTCAATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
23 2 0.10
24 4 0.20
25 7 0.35
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.36
Consensus pattern (25 bp):
ATTAAACAACATAATATTTAAATAA
Found at i:37671594 original size:21 final size:21
Alignment explanation
Indices: 37671555--37671594 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
37671545 TCAGCACACT
*
37671555 CAGATGCATCAATAACAAAGC
1 CAGATGCATCAACAACAAAGC
* *
37671576 CAGATGCATCCACACCAAA
1 CAGATGCATCAACAACAAA
37671595 ATCAGATGTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.30, G:0.12, T:0.12
Consensus pattern (21 bp):
CAGATGCATCAACAACAAAGC
Found at i:37686434 original size:32 final size:32
Alignment explanation
Indices: 37686390--37686470 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 32
37686380 TCCATTCCAG
* * *
37686390 TAAGTATATTTGTTAAGTGAGAACTGTGTTCA
1 TAAGTATGTTTGTTAAGTGAGAACAGAGTTCA
* *
37686422 TAAGTATGTTTGTTAAATGCGAACAGAGTTCA
1 TAAGTATGTTTGTTAAGTGAGAACAGAGTTCA
* * *
37686454 CAAGTTTGTATGTTAAG
1 TAAGTATGTTTGTTAAG
37686471 GTTAGGATAT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.38
Consensus pattern (32 bp):
TAAGTATGTTTGTTAAGTGAGAACAGAGTTCA
Found at i:37688451 original size:31 final size:31
Alignment explanation
Indices: 37688413--37688474 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
37688403 AGGCAAATTA
37688413 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
37688444 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
37688475 AAAATTATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (31 bp):
CAAGAGTAATTGAATCCTAATAAAACTCTTT
Found at i:37692614 original size:47 final size:48
Alignment explanation
Indices: 37692507--37692943 Score: 618
Period size: 47 Copynumber: 9.1 Consensus size: 48
37692497 GAAATGATAG
37692507 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
37692556 TAAGGCCTAATGGCCGATGTGATGAATGTTG-AAGTG-TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATG-TGAAAGTGATATATATGTGA
* *
37692603 TAAGGCCTAATGGCCGATGTGATGAACGTGAATGT-ATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGA
*
37692650 TAAGGCCTAATGGCTGATGTGATGAATGTG-AAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
37692698 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGA
37692745 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
* *
37692794 TAGGGCCTAATGGCTGATGTGATGAATGTGAAAGTG-TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGA
*
37692841 TAAGGCCTAATGGCCGATGTGGATGAATGTGGAAGTGGATATATATGTGA
1 TAAGGCCTAATGGCCGATGT-GATGAATGTGAAAGT-GATATATATGTGA
* * * * * * * * *
37692891 CAGGGTCGAGTGGCCAACGTGAATGGATGTGAAAGTG-TATAAAATGTGA
1 TAAGGCCTAATGGCCGATGTG-ATGAATGTGAAAGTGATAT-ATATGTGA
37692940 TAAG
1 TAAG
37692944 TCCCGAAGGG
Statistics
Matches: 352, Mismatches: 23, Indels: 26
0.88 0.06 0.06
Matches are distributed among these distances:
46 5 0.01
47 156 0.44
48 58 0.16
49 95 0.27
50 38 0.11
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (48 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGA
Found at i:37692836 original size:191 final size:191
Alignment explanation
Indices: 37692507--37692943 Score: 646
Period size: 191 Copynumber: 2.3 Consensus size: 191
37692497 GAAATGATAG
37692507 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
37692572 ATGTGATGAATGTTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAATG
64 ATGTGATGAATGTTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAG
* *
37692637 TATATATATGTGATAAGGCCTAATGGCTGATGT-GATGAATGT-GAAGTGTATATATATGTGA
129 TATATATATGTGATAAGGCCTAATGGCCGATGTGGATGAATGTGGAAGTGGATATATATGTGA
37692698 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * *
37692763 GTGATGAATG-TGAAAGTGTATATATATGTGATAGGGCCTAATGGCTGATGTGATGAATGTGAAA
66 GTGATGAATGTTG-AAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAA
*
37692827 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGGATGAATGTGGAAGTGGATATATATGTGA
128 GTATATATATGTGATAAGGCCTAATGGCCGATGTGGATGAATGTGGAAGTGGATATATATGTGA
* * * * * * * * *
37692891 CAGGGTCGAGTGGCCAACGTGAATGGATGTGAAAGTGTATAAAATGTGATAAG
1 TAAGGCCTAATGGCCGATGTG-ATGAATGTGAAAGTGTAT-ATATGTGATAAG
37692944 TCCCGAAGGG
Statistics
Matches: 223, Mismatches: 16, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
188 2 0.01
189 44 0.20
191 108 0.48
192 9 0.04
193 32 0.14
194 17 0.08
195 11 0.05
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (191 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTA
TATATATGTGATAAGGCCTAATGGCCGATGTGGATGAATGTGGAAGTGGATATATATGTGA
Found at i:37698816 original size:31 final size:32
Alignment explanation
Indices: 37698778--37698840 Score: 119
Period size: 31 Copynumber: 2.0 Consensus size: 32
37698768 AGGCAAATTA
37698778 CAAGAGTAATTGAATCCTAAT-AAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
37698809 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
37698841 AAAATTATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 21 0.68
32 10 0.32
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.32
Consensus pattern (32 bp):
CAAGAGTAATTGAATCCTAATAAAAACTCTTT
Found at i:37700428 original size:19 final size:19
Alignment explanation
Indices: 37700400--37700438 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
37700390 TTTATGGTTT
37700400 TAAATAATTTTTGGGTAAAA
1 TAAATAA-TTTTGGGTAAAA
*
37700420 TAAAT-ATTTTGGGTTAAA
1 TAAATAATTTTGGGTAAAA
37700438 T
1 T
37700439 TGGAATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 12 0.67
19 1 0.06
20 5 0.28
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (19 bp):
TAAATAATTTTGGGTAAAA
Found at i:37704365 original size:40 final size:40
Alignment explanation
Indices: 37704282--37704544 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
37704272 TTGAATGCTG
* * * * * *
37704282 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
37704322 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
37704362 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
37704402 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
37704442 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
37704482 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
37704521 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37704545 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:37704564 original size:79 final size:80
Alignment explanation
Indices: 37704321--37704579 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
37704311 AAGTGAATAT
* * * * * * *
37704321 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
37704385 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
37704401 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
37704466 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
37704481 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
37704545 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
37704560 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
37704580 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:37712302 original size:40 final size:40
Alignment explanation
Indices: 37712219--37712481 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
37712209 TTGAATGCTG
* * * * * *
37712219 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
37712259 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
37712299 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
37712339 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
37712379 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
37712419 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
37712458 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37712482 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:37712501 original size:79 final size:80
Alignment explanation
Indices: 37712258--37712516 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
37712248 AAGTGAATAT
* * * * * * *
37712258 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
37712322 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
37712338 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
37712403 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
37712418 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
37712482 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
37712497 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
37712517 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:37726013 original size:19 final size:20
Alignment explanation
Indices: 37725974--37726016 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
37725964 TAATAATAAT
* *
37725974 ATATTTTTTAATTGTTATCA
1 ATATGTTTTAAATGTTATCA
37725994 ATATGTTTTAAATG-TATCA
1 ATATGTTTTAAATGTTATCA
37726013 ATAT
1 ATAT
37726017 TATTTAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (20 bp):
ATATGTTTTAAATGTTATCA
Found at i:37726022 original size:19 final size:19
Alignment explanation
Indices: 37725978--37726024 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
37725968 AATAATATAT
*
37725978 TTTTTAATTGTTATCAATA
1 TTTTTAAATGTTATCAATA
37725997 TGTTTTAAATG-TATCAATA
1 T-TTTTAAATGTTATCAATA
37726016 TTATTTAAA
1 TT-TTTAAA
37726025 AAATACATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 1 0.04
19 16 0.64
20 8 0.32
ACGTcount: A:0.36, C:0.04, G:0.06, T:0.53
Consensus pattern (19 bp):
TTTTTAAATGTTATCAATA
Found at i:37736664 original size:44 final size:45
Alignment explanation
Indices: 37736611--37736962 Score: 171
Period size: 44 Copynumber: 7.5 Consensus size: 45
37736601 TGAAGCTAGT
*
37736611 AATCCTATCTCCCTAAGATTACAGTGGAGCGGATTAAAACAAAG-
1 AATCTTATCTCCCTAAGATTACAGTGGAGCGGATTAAAACAAAGA
* * * * * *
37736655 GATCTTATCTCTCTGAAG-TTACAGTAGAGTAGATCGCATCAGATCGAAGCCAGA
1 AATCTTATCTCCCT-AAGATTACAGT-G-G-AG--CGGATTAAAAC-AA---AGA
* * * * * * *
37736709 AATCTTATCTTCCTGAGATTACAGTGGAGCAGATTGAAGC-TAGT
1 AATCTTATCTCCCTAAGATTACAGTGGAGCGGATTAAAACAAAGA
* *
37736753 AATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACAAAG-
1 AATCTTATCTCCCTAAGATTACAGTGGAGCGGATTAAAACAAAGA
* * * * * *
37736797 GATCTTATCTCTCTGAAG-TTACAGTAGAGTAGATCGCATCAGATCGAAGCCAGA
1 AATCTTATCTCCCT-AAGATTACAGT-G-G-AG--CGGATTAAAAC-AA---AGA
* * * * * * *
37736851 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC-TAGT
1 AATCTTATCTCCCTAAGATTACAGTGGAGCGGATTAAAACAAAGA
*
37736895 AATCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACAAAG-
1 AATCTTATCTCCCTAAGATTACAGTGGAGCGGATTAAAACAAAGA
* *
37736939 GATCTTATCTCTCTGAAG-TTACAG
1 AATCTTATCTCCCT-AAGATTACAG
37736963 CAAGTAGATC
Statistics
Matches: 228, Mismatches: 53, Indels: 54
0.68 0.16 0.16
Matches are distributed among these distances:
44 129 0.57
45 13 0.06
46 2 0.01
47 4 0.02
49 24 0.11
50 4 0.02
51 4 0.02
52 2 0.01
53 10 0.04
54 36 0.16
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (45 bp):
AATCTTATCTCCCTAAGATTACAGTGGAGCGGATTAAAACAAAGA
Found at i:37736777 original size:98 final size:98
Alignment explanation
Indices: 37736597--37736777 Score: 213
Period size: 98 Copynumber: 1.8 Consensus size: 98
37736587 ATAGCAGAGT
* * * * * *
37736597 AGATTGAAGCTAGTAATCCTATCTCCCTAAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTA
1 AGATCGAAGCCAGAAATCCTATCTCCCTAAGATTACAGTGGAGCAGATTAAAACAAAGAATCCTA
*
37736662 TCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
66 TCTCCCTGAAGTTACAGTAGAGTAGATCGCATC
* * * * * *
37736695 AGATCGAAGCCAGAAATCTTATCTTCCTGAGATTACAGTGGAGCAGATTGAAGC-TAGTAATCCT
1 AGATCGAAGCCAGAAATCCTATCTCCCTAAGATTACAGTGGAGCAGATTAAAACAAAG-AATCCT
37736759 ATCTCCCTG-AGATTACAGT
65 ATCTCCCTGAAG-TTACAGT
37736778 GGAGCGGATT
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
97 4 0.06
98 64 0.94
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (98 bp):
AGATCGAAGCCAGAAATCCTATCTCCCTAAGATTACAGTGGAGCAGATTAAAACAAAGAATCCTA
TCTCCCTGAAGTTACAGTAGAGTAGATCGCATC
Found at i:37736917 original size:98 final size:98
Alignment explanation
Indices: 37736738--37736919 Score: 233
Period size: 98 Copynumber: 1.9 Consensus size: 98
37736728 TACAGTGGAG
* * * * * *
37736738 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTT
1 CAGATCGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTAAAACAAAGAATCTT
*
37736803 ATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
66 ATCTCCCTGAAGTTACAGTAGAGTAGATCGCAT
* * * *
37736836 CAGATCGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC-TAGTAATCT
1 CAGATCGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTAAAACAAAG-AATCT
37736900 TATCTCCCTG-AGATTACAGT
65 TATCTCCCTGAAG-TTACAGT
37736920 GGAGCGGATT
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
97 4 0.06
98 67 0.94
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (98 bp):
CAGATCGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTAAAACAAAGAATCTT
ATCTCCCTGAAGTTACAGTAGAGTAGATCGCAT
Found at i:37737003 original size:142 final size:142
Alignment explanation
Indices: 37736558--37736981 Score: 742
Period size: 142 Copynumber: 3.0 Consensus size: 142
37736548 GGGGCAGACT
* * * * * *
37736558 GAAGCCAAAAATCCTAGCTCCCTGAGATTATAGCAGAGTAGATTGAAGCTAGTAATCCTATCTCC
1 GAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCC
*
37736623 CTAAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA
66 CTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA
37736688 TCGCATCAGATC
131 TCGCATCAGATC
* *
37736700 GAAGCCAGAAATCTTATCTTCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCC
1 GAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCC
37736765 CTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA
66 CTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA
37736830 TCGCATCAGATC
131 TCGCATCAGATC
*
37736842 GAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATCTCC
1 GAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCC
*
37736907 CTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGCA-AGTAGA
66 CTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA
37736971 TCGCATCAGAT
131 TCGCATCAGAT
37736982 TGGAGCTACA
Statistics
Matches: 269, Mismatches: 13, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
141 17 0.06
142 252 0.94
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (142 bp):
GAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCC
CTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA
TCGCATCAGATC
Found at i:37737409 original size:18 final size:17
Alignment explanation
Indices: 37737377--37737410 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
37737367 AAACCCAACT
37737377 AGCCCAAATGCCCATTC
1 AGCCCAAATGCCCATTC
*
37737394 AGCCCAATTAGCCCATT
1 AGCCCAAAT-GCCCATT
37737411 TTGAAAGAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.29, C:0.38, G:0.12, T:0.21
Consensus pattern (17 bp):
AGCCCAAATGCCCATTC
Found at i:37738828 original size:19 final size:20
Alignment explanation
Indices: 37738789--37738831 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
37738779 TTATAATAAT
* *
37738789 ATATTTTTTAATTGCTATCA
1 ATATGTTTTAAATGCTATCA
37738809 ATATGTTTTAAATG-TATCA
1 ATATGTTTTAAATGCTATCA
37738828 ATAT
1 ATAT
37738832 TATTTAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.51
Consensus pattern (20 bp):
ATATGTTTTAAATGCTATCA
Found at i:37738837 original size:19 final size:19
Alignment explanation
Indices: 37738793--37738839 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
37738783 AATAATATAT
*
37738793 TTTTTAATTGCTATCAATA
1 TTTTTAAATGCTATCAATA
37738812 TGTTTTAAATG-TATCAATA
1 T-TTTTAAATGCTATCAATA
37738831 TTATTTAAA
1 TT-TTTAAA
37738840 AAATACATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 1 0.04
19 16 0.64
20 8 0.32
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.51
Consensus pattern (19 bp):
TTTTTAAATGCTATCAATA
Found at i:37744569 original size:27 final size:27
Alignment explanation
Indices: 37744560--37744769 Score: 224
Period size: 27 Copynumber: 7.8 Consensus size: 27
37744550 CACAAAGACA
*
37744560 TCATTATCATGGATCGCCACAAAAGCT
1 TCATTATCATAGATCGCCACAAAAGCT
* * * *
37744587 TCCTTTTCATAGATTGCCACAAAAGCA
1 TCATTATCATAGATCGCCACAAAAGCT
* *
37744614 TCATTATCATGGATCGCCACGAAAGCT
1 TCATTATCATAGATCGCCACAAAAGCT
*
37744641 TCATTTTCATAGATCGCCACAAAAGCT
1 TCATTATCATAGATCGCCACAAAAGCT
* **
37744668 TCCTTATCATAGATCATCACAAAAGCTT
1 TCATTATCATAGATCGCCACAAAAGC-T
* *
37744696 TC-TTATCATAGATCGCCACCAAGGCT
1 TCATTATCATAGATCGCCACAAAAGCT
* * * *
37744722 TCCTTTTCATAGATCGCCACCAAGGCT
1 TCATTATCATAGATCGCCACAAAAGCT
* * *
37744749 TCCTTTTCATAGATCACCACA
1 TCATTATCATAGATCGCCACA
37744770 TGTCGCATGT
Statistics
Matches: 156, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 3 0.02
27 150 0.96
28 3 0.02
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.29
Consensus pattern (27 bp):
TCATTATCATAGATCGCCACAAAAGCT
Found at i:37744598 original size:54 final size:54
Alignment explanation
Indices: 37744538--37744769 Score: 259
Period size: 54 Copynumber: 4.3 Consensus size: 54
37744528 TGGCATTCCC
** *
37744538 TTCATAGATTACCAC-AAAGACATCATTATCATGGATCGCCACAAAAGCTTCCTT
1 TTCATAGATCGCCACAAAAG-CATCATTATCATAGATCGCCACAAAAGCTTCCTT
* * * *
37744592 TTCATAGATTGCCACAAAAGCATCATTATCATGGATCGCCACGAAAGCTTCATT
1 TTCATAGATCGCCACAAAAGCATCATTATCATAGATCGCCACAAAAGCTTCCTT
* * ** *
37744646 TTCATAGATCGCCACAAAAGCTTCCTTATCATAGATCATCACAAAAGCTTTCTT
1 TTCATAGATCGCCACAAAAGCATCATTATCATAGATCGCCACAAAAGCTTCCTT
* * * * * * * *
37744700 ATCATAGATCGCCACCAAGGCTTCCTTTTCATAGATCGCCACCAAGGCTTCCTT
1 TTCATAGATCGCCACAAAAGCATCATTATCATAGATCGCCACAAAAGCTTCCTT
*
37744754 TTCATAGATCACCACA
1 TTCATAGATCGCCACA
37744770 TGTCGCATGT
Statistics
Matches: 153, Mismatches: 24, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
54 149 0.97
55 4 0.03
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (54 bp):
TTCATAGATCGCCACAAAAGCATCATTATCATAGATCGCCACAAAAGCTTCCTT
Found at i:37744702 original size:81 final size:81
Alignment explanation
Indices: 37744560--37744769 Score: 287
Period size: 81 Copynumber: 2.6 Consensus size: 81
37744550 CACAAAGACA
* * ** *
37744560 TCATTATCATGGATCGCCACAAAAGCTTCCTTTTCATAGATTGCCACAAAAGCATCATTATCATG
1 TCATTTTCATAGATCGCCACAAAAGCTTCCTTTTCATAGATCACCACAAAAGCATCATTATCATA
*
37744625 GATCGCCACGAAAGCT
66 GATCGCCACCAAAGCT
* * *
37744641 TCATTTTCATAGATCGCCACAAAAGCTTCCTTATCATAGATCATCACAAAAGCTTTC-TTATCAT
1 TCATTTTCATAGATCGCCACAAAAGCTTCCTTTTCATAGATCACCACAAAAGC-ATCATTATCAT
*
37744705 AGATCGCCACCAAGGCT
65 AGATCGCCACCAAAGCT
* * *
37744722 TCCTTTTCATAGATCGCCACCAAGGCTTCCTTTTCATAGATCACCACA
1 TCATTTTCATAGATCGCCACAAAAGCTTCCTTTTCATAGATCACCACA
37744770 TGTCGCATGT
Statistics
Matches: 113, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
81 111 0.98
82 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.29
Consensus pattern (81 bp):
TCATTTTCATAGATCGCCACAAAAGCTTCCTTTTCATAGATCACCACAAAAGCATCATTATCATA
GATCGCCACCAAAGCT
Found at i:37749040 original size:17 final size:16
Alignment explanation
Indices: 37749003--37749045 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
37748993 GAAAAATTAT
37749003 GTTTTTCATCCCTCTA
1 GTTTTTCATCCCTCTA
* *
37749019 GTTTTTTATCCCTTTA
1 GTTTTTCATCCCTCTA
37749035 GTTTTTCATCC
1 GTTTTTCATCC
37749046 TTTCAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.26, G:0.07, T:0.56
Consensus pattern (16 bp):
GTTTTTCATCCCTCTA
Found at i:37750280 original size:24 final size:24
Alignment explanation
Indices: 37750253--37750304 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
37750243 TGAAGTGGAT
37750253 TCAAATATTTGTGATATTCAATTA
1 TCAAATATTTGTGATATTCAATTA
37750277 TCAAATATTTGTGATATTCAATTA
1 TCAAATATTTGTGATATTCAATTA
37750301 TCAA
1 TCAA
37750305 TTTACAGAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (24 bp):
TCAAATATTTGTGATATTCAATTA
Found at i:37753216 original size:17 final size:17
Alignment explanation
Indices: 37753194--37753234 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
37753184 ACATCAAAAG
37753194 GAAAGATACA-TGAACTT
1 GAAAGATACATTGAA-TT
*
37753211 GGAAGATACATTGAATT
1 GAAAGATACATTGAATT
37753228 GAAAGAT
1 GAAAGAT
37753235 TTATGTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 17 0.81
18 4 0.19
ACGTcount: A:0.46, C:0.07, G:0.22, T:0.24
Consensus pattern (17 bp):
GAAAGATACATTGAATT
Found at i:37753577 original size:77 final size:77
Alignment explanation
Indices: 37753486--37753642 Score: 314
Period size: 77 Copynumber: 2.0 Consensus size: 77
37753476 GTGGGTCACA
37753486 ATTTTTCTTCACCTATCTTAACTTATCGAAATTTTAATCTGTTGGAAAAAAATAGATTTTTGGAA
1 ATTTTTCTTCACCTATCTTAACTTATCGAAATTTTAATCTGTTGGAAAAAAATAGATTTTTGGAA
37753551 GCTTTGAAGCAT
66 GCTTTGAAGCAT
37753563 ATTTTTCTTCACCTATCTTAACTTATCGAAATTTTAATCTGTTGGAAAAAAATAGATTTTTGGAA
1 ATTTTTCTTCACCTATCTTAACTTATCGAAATTTTAATCTGTTGGAAAAAAATAGATTTTTGGAA
37753628 GCTTTGAAGCAT
66 GCTTTGAAGCAT
37753640 ATT
1 ATT
37753643 ATTGATTAGT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 80 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (77 bp):
ATTTTTCTTCACCTATCTTAACTTATCGAAATTTTAATCTGTTGGAAAAAAATAGATTTTTGGAA
GCTTTGAAGCAT
Done.