Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 125 of 226
Found at i:38630154 original size:29 final size:32
Alignment explanation
Indices: 38630106--38630165 Score: 81
Period size: 29 Copynumber: 2.0 Consensus size: 32
38630096 AATTTTGTGC
38630106 AGGAATACAATTTGGGGCTAAATAGAAGAAAA
1 AGGAATACAATTTGGGGCTAAATAGAAGAAAA
* *
38630138 AGGAA-ACAA-TT-GGGCTAGATTGAAGAAA
1 AGGAATACAATTTGGGGCTAAATAGAAGAAA
38630166 GAAGCAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 15 0.58
30 2 0.08
31 4 0.15
32 5 0.19
ACGTcount: A:0.48, C:0.07, G:0.27, T:0.18
Consensus pattern (32 bp):
AGGAATACAATTTGGGGCTAAATAGAAGAAAA
Found at i:38632689 original size:18 final size:18
Alignment explanation
Indices: 38632668--38632706 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
38632658 CCTTCTTCTC
38632668 CCCTTTCCCCTTTCCCTT
1 CCCTTTCCCCTTTCCCTT
*
38632686 CCCTTTCCCTTTTCCCTT
1 CCCTTTCCCCTTTCCCTT
38632704 CCC
1 CCC
38632707 CTTGGGTTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (18 bp):
CCCTTTCCCCTTTCCCTT
Found at i:38632693 original size:6 final size:6
Alignment explanation
Indices: 38632668--38632709 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
38632658 CCTTCTTCTC
*
38632668 CCCTTT CCCCTTT CCC-TT CCCTTT CCCTTTT CCCTTC CCCTT
1 CCCTTT -CCCTTT CCCTTT CCCTTT CCC-TTT CCCTTT CCCTT
38632710 GGGTTGCAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
5 5 0.16
6 15 0.47
7 12 0.38
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (6 bp):
CCCTTT
Found at i:38632779 original size:3 final size:3
Alignment explanation
Indices: 38632771--38632834 Score: 51
Period size: 3 Copynumber: 20.7 Consensus size: 3
38632761 GGTAAGGCTC
* *
38632771 CTT CTT CTT CTT CTT CTT CCGTT CTT CATT CCTT TTT CTT CTT C-T GTT
1 CTT CTT CTT CTT CTT CTT -C-TT CTT C-TT -CTT CTT CTT CTT CTT CTT
*
38632819 CTT CAT CTT C-T CTT CT
1 CTT CTT CTT CTT CTT CT
38632835 CAGCATATTC
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
2 3 0.06
3 37 0.76
4 6 0.12
5 3 0.06
ACGTcount: A:0.03, C:0.33, G:0.03, T:0.61
Consensus pattern (3 bp):
CTT
Found at i:38632834 original size:25 final size:26
Alignment explanation
Indices: 38632772--38632834 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
38632762 GTAAGGCTCC
38632772 TTCTTCTTCTTCTTCTTCCGTTCTTCA
1 TTCTTC-TCTTCTTCTTCCGTTCTTCA
*
38632799 TTCCTT-T-TTCTTCTTCTGTTCTTCA
1 TT-CTTCTCTTCTTCTTCCGTTCTTCA
38632824 -TCTTCTCTTCT
1 TTCTTCTCTTCT
38632835 CAGCATATTC
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
23 3 0.09
24 2 0.06
25 21 0.66
26 1 0.03
27 2 0.06
28 3 0.09
ACGTcount: A:0.03, C:0.32, G:0.03, T:0.62
Consensus pattern (26 bp):
TTCTTCTCTTCTTCTTCCGTTCTTCA
Found at i:38633083 original size:11 final size:11
Alignment explanation
Indices: 38633067--38633092 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
38633057 TTGCTGGATG
38633067 ATATTTTGGTT
1 ATATTTTGGTT
38633078 ATATTTTGGTT
1 ATATTTTGGTT
38633089 ATAT
1 ATAT
38633093 ACAAATGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (11 bp):
ATATTTTGGTT
Found at i:38635415 original size:15 final size:15
Alignment explanation
Indices: 38635395--38635447 Score: 61
Period size: 15 Copynumber: 3.4 Consensus size: 15
38635385 GTGTAAAAAT
38635395 AATTTAAAATATAAG
1 AATTTAAAATATAAG
* * *
38635410 AATTTATTAATAAAAAT
1 AATTTA-AAAT-ATAAG
38635427 AATTTAAAATATAAG
1 AATTTAAAATATAAG
38635442 AATTTA
1 AATTTA
38635448 TTAATATGTA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
15 15 0.50
16 6 0.20
17 9 0.30
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (15 bp):
AATTTAAAATATAAG
Found at i:38635424 original size:32 final size:32
Alignment explanation
Indices: 38635388--38635453 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
38635378 GCAATATGTG
38635388 TAAAAATAATTTAAAATATAAGAATTTATTAA
1 TAAAAATAATTTAAAATATAAGAATTTATTAA
38635420 TAAAAATAATTTAAAATATAAGAATTTATTAA
1 TAAAAATAATTTAAAATATAAGAATTTATTAA
38635452 TA
1 TA
38635454 TGTATATAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (32 bp):
TAAAAATAATTTAAAATATAAGAATTTATTAA
Found at i:38635437 original size:16 final size:16
Alignment explanation
Indices: 38635388--38635437 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
38635378 GCAATATGTG
38635388 TAAAAATAATTTAAAA
1 TAAAAATAATTTAAAA
* * *
38635404 T-ATAAGAATTTATTAA
1 TAAAAATAATTTA-AAA
38635420 TAAAAATAATTTAAAA
1 TAAAAATAATTTAAAA
38635436 TA
1 TA
38635438 TAAGAATTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
15 9 0.35
16 8 0.31
17 9 0.35
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (16 bp):
TAAAAATAATTTAAAA
Found at i:38635453 original size:16 final size:16
Alignment explanation
Indices: 38635402--38635454 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
38635392 AATAATTTAA
38635402 AATATAAGAATTTATT
1 AATATAAGAATTTATT
* * *
38635418 AATAAAAATAATTTA-A
1 AAT-ATAAGAATTTATT
38635434 AATATAAGAATTTATT
1 AATATAAGAATTTATT
38635450 AATAT
1 AATAT
38635455 GTATATAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
15 9 0.31
16 11 0.38
17 9 0.31
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.40
Consensus pattern (16 bp):
AATATAAGAATTTATT
Found at i:38635598 original size:20 final size:20
Alignment explanation
Indices: 38635573--38635612 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
38635563 AATAGTTTCC
*
38635573 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
38635593 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
38635613 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:38635619 original size:14 final size:14
Alignment explanation
Indices: 38635596--38635635 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
38635586 ACAGAAAAGT
*
38635596 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
38635610 AAATCATTTTACGG
1 AAAACATTTTACAG
38635624 AAAACATTTTAC
1 AAAACATTTTAC
38635636 TGCCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:38642434 original size:85 final size:85
Alignment explanation
Indices: 38642281--38642455 Score: 287
Period size: 85 Copynumber: 2.1 Consensus size: 85
38642271 CCAAACGAGT
* * * *
38642281 GATGGTTTGGAACCTAACTGAGCACTAAGAAACCTTGTATTAGGAAAGTATTTGGCCCTTAGAAT
1 GATGCTTTGAAACCTAACTAAGCACTAAGAAACCTTGTATTAGGAAAGTATTTGGCCATTAGAAT
*
38642346 ACGCACCATGAACGACGTAG
66 ACGCACCATCAACGACGTAG
*
38642366 GATGCTTTGAAACCTAACTAAGCACTAAGAAACCTTGTATTAGGAAAGTATTTGGCTATTAGAAT
1 GATGCTTTGAAACCTAACTAAGCACTAAGAAACCTTGTATTAGGAAAGTATTTGGCCATTAGAAT
38642431 ACGCACCATCAACGACGTAG
66 ACGCACCATCAACGACGTAG
*
38642451 TATGC
1 GATGC
38642456 ATTAAAATAA
Statistics
Matches: 83, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 83 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (85 bp):
GATGCTTTGAAACCTAACTAAGCACTAAGAAACCTTGTATTAGGAAAGTATTTGGCCATTAGAAT
ACGCACCATCAACGACGTAG
Found at i:38642922 original size:25 final size:25
Alignment explanation
Indices: 38642878--38642926 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
38642868 TAATTCCTTA
*
38642878 AATTAAAAAAAAAACCTATTTAACC
1 AATTAAAAAAAAAACATATTTAACC
**
38642903 AATTAAAAAAACGACATATTTAAC
1 AATTAAAAAAAAAACATATTTAAC
38642927 TTATTTAACC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.59, C:0.14, G:0.02, T:0.24
Consensus pattern (25 bp):
AATTAAAAAAAAAACATATTTAACC
Found at i:38643557 original size:29 final size:30
Alignment explanation
Indices: 38643490--38643551 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
38643480 TTAATTTGTG
* * *
38643490 AAAATTGGATCAAATCAAAATTTTATGTAT
1 AAAATTGCATAAAATCAAAAGTTTATGTAT
38643520 AAAATTGCATAAAAT-AAAAGTTTATGTAT
1 AAAATTGCATAAAATCAAAAGTTTATGTAT
38643549 AAA
1 AAA
38643552 TATGCACATT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 16 0.55
30 13 0.45
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.34
Consensus pattern (30 bp):
AAAATTGCATAAAATCAAAAGTTTATGTAT
Found at i:38644569 original size:16 final size:16
Alignment explanation
Indices: 38644544--38644575 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
38644534 TGATAAATTG
*
38644544 AAAAATTAAATGTTGA
1 AAAAAATAAATGTTGA
38644560 AAAAAATAAATGTTGA
1 AAAAAATAAATGTTGA
38644576 GCATTTGAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.28
Consensus pattern (16 bp):
AAAAAATAAATGTTGA
Found at i:38645603 original size:16 final size:16
Alignment explanation
Indices: 38645572--38645608 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
38645562 GATTGAATAA
38645572 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
38645588 TATT-TTTAAAAGTTAT
1 TATTATTTAAAA-TTAT
38645604 TATTA
1 TATTA
38645609 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:38645676 original size:22 final size:22
Alignment explanation
Indices: 38645620--38645678 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
38645610 AATAAAATTG
*
38645620 AAATATTAAATAATT-TATTAAC
1 AAATA-TAAATAATTATATGAAC
* *
38645642 AAAT-TATACTAATTATATGAAT
1 AAATATA-AATAATTATATGAAC
38645664 AAATATAAATAATTA
1 AAATATAAATAATTA
38645679 AATATGTATG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
20 2 0.07
21 6 0.20
22 20 0.67
23 2 0.07
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (22 bp):
AAATATAAATAATTATATGAAC
Found at i:38648390 original size:33 final size:32
Alignment explanation
Indices: 38648353--38648457 Score: 111
Period size: 33 Copynumber: 3.2 Consensus size: 32
38648343 GAAGGAAAGG
* * *
38648353 GAGAGAGAAAGAAGAGAAAAAGATAAGGAGAAA
1 GAGAG-GAAAGAAGAGAGAAGGAAAAGGAGAAA
* * *
38648386 GAGAGGGATAGGAGAGAGAAGGAAAAGGAGAGA
1 GAGA-GGAAAGAAGAGAGAAGGAAAAGGAGAAA
**
38648419 GAGAGGAGGGAAAGAGAGAAGGAAAAGGAGAAA
1 GAGAGGAAAG-AAGAGAGAAGGAAAAGGAGAAA
38648452 GAGAGG
1 GAGAGG
38648458 GAGATAGACC
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
32 4 0.07
33 55 0.92
34 1 0.02
ACGTcount: A:0.54, C:0.00, G:0.44, T:0.02
Consensus pattern (32 bp):
GAGAGGAAAGAAGAGAGAAGGAAAAGGAGAAA
Found at i:38648414 original size:66 final size:66
Alignment explanation
Indices: 38648322--38648459 Score: 161
Period size: 66 Copynumber: 2.1 Consensus size: 66
38648312 ATTTAGAGAG
* * * * *
38648322 GAGGGGTAGCAGAGAGAGGGAGAAGGAAAGGGAGAGAGAAAG-AAGAGAAAAAGATAAGGAGAAA
1 GAGGGATAGCAGAGAGAAGGAAAAGGAAAGAGAGAG-GAAAGAAAGAGAAAAAGAAAAGGAGAAA
38648386 GA
65 GA
* * ** * *
38648388 GAGGGATAGGAGAGAGAAGGAAAAGGAGAGAGAGAGGAGGGAAAGAGAGAAGGAAAAGGAGAAAG
1 GAGGGATAGCAGAGAGAAGGAAAAGGAAAGAGAGAGGAAAGAAAGAGAAAAAGAAAAGGAGAAAG
38648453 A
66 A
38648454 GAGGGA
1 GAGGGA
38648460 GATAGACCGG
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
65 3 0.05
66 57 0.95
ACGTcount: A:0.51, C:0.01, G:0.46, T:0.02
Consensus pattern (66 bp):
GAGGGATAGCAGAGAGAAGGAAAAGGAAAGAGAGAGGAAAGAAAGAGAAAAAGAAAAGGAGAAAG
A
Found at i:38648451 original size:20 final size:20
Alignment explanation
Indices: 38648398--38648456 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
38648388 GAGGGATAGG
38648398 AGAGAGAAGGAAAAGGAG--
1 AGAGAGAAGGAAAAGGAGAA
38648416 AGAGAG-AGG---AGG-GAA
1 AGAGAGAAGGAAAAGGAGAA
38648431 AGAGAGAAGGAAAAGGAGAA
1 AGAGAGAAGGAAAAGGAGAA
38648451 AGAGAG
1 AGAGAG
38648457 GGAGATAGAC
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
13 1 0.03
14 3 0.09
15 6 0.18
16 3 0.09
17 3 0.09
18 6 0.18
19 3 0.09
20 9 0.26
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (20 bp):
AGAGAGAAGGAAAAGGAGAA
Found at i:38648547 original size:75 final size:76
Alignment explanation
Indices: 38648468--38648681 Score: 335
Period size: 75 Copynumber: 2.9 Consensus size: 76
38648458 GAGATAGACC
38648468 GGAGAGAGAGAAGCAGTAGTAGGTCGAGGAGGCACGAAAGTGATCGTGA-CATAGAGAGGGAACG
1 GGAGAGAGAGAAGCAGTAGTAGGTCGAGGAGGCACGAAAGTGATCGTGAGCATAGAGAGGGAACG
38648532 GGAGAGAGATA
66 GGAGAGAGATA
* * *
38648543 GGAGAGAGAGGAGCAGTAGTAGGTCGAGGAGGCACGAGAGTGATCGTGAGC-TAGAGAGGGAGCG
1 GGAGAGAGAGAAGCAGTAGTAGGTCGAGGAGGCACGAAAGTGATCGTGAGCATAGAGAGGGAACG
38648607 GGAGAGAGATA
66 GGAGAGAGATA
* * * * *
38648618 GGAGAGAGAGAAGCAGTAGTAGGTTGAGGAGACACGAAAGTGAACGCGATCA-AGAGAGGGAACG
1 GGAGAGAGAGAAGCAGTAGTAGGTCGAGGAGGCACGAAAGTGATCGTGAGCATAGAGAGGGAACG
38648682 TGAAATTGAC
Statistics
Matches: 126, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
75 125 0.99
76 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.44, T:0.10
Consensus pattern (76 bp):
GGAGAGAGAGAAGCAGTAGTAGGTCGAGGAGGCACGAAAGTGATCGTGAGCATAGAGAGGGAACG
GGAGAGAGATA
Found at i:38652084 original size:32 final size:32
Alignment explanation
Indices: 38652038--38652107 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
38652028 TTGAGCTTTT
38652038 ATGTTCATTATCCTGTATAGTAATAACCATGC
1 ATGTTCATTATCCTGTATAGTAATAACCATGC
*
38652070 ATGTTCATTTTCCTGTATAGTAATAACCATGC
1 ATGTTCATTATCCTGTATAGTAATAACCATGC
38652102 ATGTTC
1 ATGTTC
38652108 TTTGTTGGCC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.40
Consensus pattern (32 bp):
ATGTTCATTATCCTGTATAGTAATAACCATGC
Found at i:38654700 original size:20 final size:19
Alignment explanation
Indices: 38654646--38654701 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 19
38654636 ATCAAACTTC
38654646 TTTAAAAA-ATAAAAAAAA
1 TTTAAAAATATAAAAAAAA
*
38654664 TTTACAAAATTACAAAAAAAA
1 TTTA-AAAA-TATAAAAAAAA
38654685 TTATAAAAATATAAAAA
1 TT-TAAAAATATAAAAA
38654702 GTACTAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 4 0.12
19 4 0.12
20 7 0.22
21 15 0.47
22 2 0.06
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (19 bp):
TTTAAAAATATAAAAAAAA
Found at i:38655560 original size:21 final size:21
Alignment explanation
Indices: 38655534--38655587 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
38655524 TCCCCTGCAC
*
38655534 TTCTACTGATACTTTGACAGG
1 TTCTACTGATACTCTGACAGG
*
38655555 TTCTACTGATACTCTGACGGG
1 TTCTACTGATACTCTGACAGG
*
38655576 TTCTACCGATAC
1 TTCTACTGATAC
38655588 CAAATGGAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (21 bp):
TTCTACTGATACTCTGACAGG
Found at i:38657356 original size:41 final size:41
Alignment explanation
Indices: 38657311--38657414 Score: 145
Period size: 41 Copynumber: 2.5 Consensus size: 41
38657301 GAGTGTATAT
* * *
38657311 AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACGAAC
1 AGGGGCACGCATGTGCAATTCAGGGGTACCAAAGTACAAAC
** * *
38657352 AGGGGCATACATGTGCAATTTAGGGGTACTAAAGTACAAAC
1 AGGGGCACGCATGTGCAATTCAGGGGTACCAAAGTACAAAC
38657393 AGGGGCACGCATGTGCAATTCA
1 AGGGGCACGCATGTGCAATTCA
38657415 TACAATAATA
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.32, C:0.18, G:0.31, T:0.19
Consensus pattern (41 bp):
AGGGGCACGCATGTGCAATTCAGGGGTACCAAAGTACAAAC
Found at i:38659725 original size:30 final size:30
Alignment explanation
Indices: 38659689--38659751 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
38659679 ATCAGAAGGT
38659689 ACCTGATGCTTGGCTTTAACTTGCTGACAA
1 ACCTGATGCTTGGCTTTAACTTGCTGACAA
38659719 ACCTGATGCTTGGCTTTAACTTGCTGACAA
1 ACCTGATGCTTGGCTTTAACTTGCTGACAA
38659749 ACC
1 ACC
38659752 AAACATTTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (30 bp):
ACCTGATGCTTGGCTTTAACTTGCTGACAA
Found at i:38670280 original size:24 final size:24
Alignment explanation
Indices: 38670247--38670292 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
38670237 AAATAGCGTG
* *
38670247 AAGTTTTTCATTTATTTTTTGCCA
1 AAGTTCTTCATTTAGTTTTTGCCA
38670271 AAGTTCTTCATTTAGTTTTTGC
1 AAGTTCTTCATTTAGTTTTTGC
38670293 TTCAATCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.20, C:0.13, G:0.11, T:0.57
Consensus pattern (24 bp):
AAGTTCTTCATTTAGTTTTTGCCA
Found at i:38672357 original size:45 final size:45
Alignment explanation
Indices: 38672293--38672385 Score: 177
Period size: 45 Copynumber: 2.1 Consensus size: 45
38672283 TCAGCACTGC
*
38672293 ATTTCATCCTCAGACAGATGGCCAATCTGAGCGTGTAATTTAGGT
1 ATTTCATCCTCAGACAGATGGCCAATCTGAGCGTGTAATTCAGGT
38672338 ATTTCATCCTCAGACAGATGGCCAATCTGAGCGTGTAATTCAGGT
1 ATTTCATCCTCAGACAGATGGCCAATCTGAGCGTGTAATTCAGGT
38672383 ATT
1 ATT
38672386 GGAAGATATG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (45 bp):
ATTTCATCCTCAGACAGATGGCCAATCTGAGCGTGTAATTCAGGT
Found at i:38676951 original size:12 final size:12
Alignment explanation
Indices: 38676913--38677002 Score: 51
Period size: 12 Copynumber: 7.5 Consensus size: 12
38676903 ATATACAAAC
38676913 TAATAT-AATAA
1 TAATATCAATAA
*
38676924 CAATATCAATAA
1 TAATATCAATAA
* *
38676936 TAATATCAGTAG
1 TAATATCAATAA
* ** *
38676948 TAATAACGGTGA
1 TAATATCAATAA
38676960 TAATAAT-AATAA
1 TAAT-ATCAATAA
*
38676972 TAA-ATTAATAA
1 TAATATCAATAA
*
38676983 TAATAGATTAATAA
1 TAAT--ATCAATAA
38676997 TAATAT
1 TAATAT
38677003 TACTAAATAG
Statistics
Matches: 61, Mismatches: 12, Indels: 11
0.73 0.14 0.13
Matches are distributed among these distances:
10 2 0.03
11 13 0.21
12 33 0.54
13 1 0.02
14 12 0.20
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.33
Consensus pattern (12 bp):
TAATATCAATAA
Found at i:38676965 original size:3 final size:3
Alignment explanation
Indices: 38676959--38677001 Score: 52
Period size: 3 Copynumber: 14.0 Consensus size: 3
38676949 AATAACGGTG
*
38676959 ATA ATA ATA ATA ATA A-A TTA ATA ATA ATA GATTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -A-TA ATA ATA ATA
38677002 TTACTAAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 1 0.03
3 30 0.86
4 2 0.06
5 2 0.06
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:38676982 original size:14 final size:14
Alignment explanation
Indices: 38676963--38677001 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
38676953 ACGGTGATAA
38676963 TAATAATAATAAAT
1 TAATAATAATAAAT
*
38676977 TAATAATAATAGAT
1 TAATAATAATAAAT
38676991 TAATAATAATA
1 TAATAATAATA
38677002 TTACTAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (14 bp):
TAATAATAATAAAT
Found at i:38676982 original size:17 final size:17
Alignment explanation
Indices: 38676959--38677001 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
38676949 AATAACGGTG
38676959 ATAATAATAATA-ATAA
1 ATAATAATAATAGATAA
*
38676975 ATTAATAATAATAGATTA
1 A-TAATAATAATAGATAA
38676993 ATAATAATA
1 ATAATAATA
38677002 TTACTAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 1 0.04
17 19 0.79
18 4 0.17
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
ATAATAATAATAGATAA
Found at i:38682839 original size:18 final size:18
Alignment explanation
Indices: 38682816--38682850 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
38682806 CAACCGTGAT
*
38682816 AAACGCGGCTGCGACCGA
1 AAACGCGACTGCGACCGA
38682834 AAACGCGACTGCGACCG
1 AAACGCGACTGCGACCG
38682851 CAATTTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.34, G:0.31, T:0.06
Consensus pattern (18 bp):
AAACGCGACTGCGACCGA
Found at i:38686927 original size:15 final size:14
Alignment explanation
Indices: 38686900--38686930 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
38686890 GGACTCACAA
38686900 AAAAATAATAAACC
1 AAAAATAATAAACC
*
38686914 AAAAATAATAAAAC
1 AAAAATAATAAACC
38686928 AAA
1 AAA
38686931 GTCTAAGTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.10, G:0.00, T:0.13
Consensus pattern (14 bp):
AAAAATAATAAACC
Found at i:38687082 original size:21 final size:19
Alignment explanation
Indices: 38687036--38687110 Score: 123
Period size: 19 Copynumber: 3.8 Consensus size: 19
38687026 AATCTTCAAG
38687036 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
38687055 GATATGCAATCTTAAATAT
1 GATATGCAATCTTAGATAT
38687074 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
38687095 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
38687111 AGATATAATT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 34 0.65
21 18 0.35
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:38687381 original size:23 final size:23
Alignment explanation
Indices: 38687337--38687381 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
38687327 TCTTATTTTG
* *
38687337 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
38687360 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
38687382 CAAATCTCCT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:38687879 original size:23 final size:22
Alignment explanation
Indices: 38687851--38687894 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
38687841 ATAATTCACT
*
38687851 TACATATATATTTTTCTTATATG
1 TACATATATATATTT-TTATATG
38687874 TACATATATATATTTTTATAT
1 TACATATATATATTTTTATAT
38687895 TTTATAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57
Consensus pattern (22 bp):
TACATATATATATTTTTATATG
Found at i:38705728 original size:16 final size:15
Alignment explanation
Indices: 38705707--38705737 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
38705697 TAATCAATCA
38705707 TGTAATGTACTAAATT
1 TGTAATGTAC-AAATT
38705723 TGTAATGTACAAATT
1 TGTAATGTACAAATT
38705738 CATATCATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42
Consensus pattern (15 bp):
TGTAATGTACAAATT
Found at i:38707730 original size:21 final size:21
Alignment explanation
Indices: 38707704--38707747 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
38707694 CTATGCCTCA
*
38707704 AACTTCATCTCATAATGAGCC
1 AACTTCAACTCATAATGAGCC
**
38707725 AACTTCAACTTGTAATGAGCC
1 AACTTCAACTCATAATGAGCC
38707746 AA
1 AA
38707748 TAGCTTCAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.27
Consensus pattern (21 bp):
AACTTCAACTCATAATGAGCC
Found at i:38711119 original size:15 final size:15
Alignment explanation
Indices: 38711099--38711127 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
38711089 ATGCCTCACA
38711099 CACCGTGTTATCAAT
1 CACCGTGTTATCAAT
38711114 CACCGTGTTATCAA
1 CACCGTGTTATCAA
38711128 GCAACATACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (15 bp):
CACCGTGTTATCAAT
Found at i:38717912 original size:39 final size:37
Alignment explanation
Indices: 38717845--38717937 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
38717835 ACCAGAATGG
* *
38717845 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
38717884 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
38717921 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
38717938 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:38718299 original size:3 final size:3
Alignment explanation
Indices: 38718291--38718338 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
38718281 ATTCCCACTC
* * * *
38718291 ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA CTA ATA CTA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
38718339 CTTACCTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:38718339 original size:18 final size:18
Alignment explanation
Indices: 38718292--38718340 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
38718282 TTCCCACTCA
*
38718292 TAATAATAATAATAATAC
1 TAATAATAATACTAATAC
38718310 TAATAATAATACTAATAC
1 TAATAATAATACTAATAC
*
38718328 TAATATTAATACT
1 TAATAATAATACT
38718341 TACCTCACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATAATAATACTAATAC
Found at i:38718340 original size:12 final size:12
Alignment explanation
Indices: 38718291--38718338 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
38718281 ATTCCCACTC
*
38718291 ATAATAATAATA
1 ATAATACTAATA
38718303 ATAATACTAATA
1 ATAATACTAATA
38718315 ATAATACTAATA
1 ATAATACTAATA
* *
38718327 CTAATATTAATA
1 ATAATACTAATA
38718339 CTTACCTCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATACTAATA
Found at i:38719078 original size:20 final size:20
Alignment explanation
Indices: 38719044--38719083 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
38719034 TTCTATTCTG
*
38719044 TTTCTTTTCTGTTTTGTTTC
1 TTTCTTTTCTGTTTTATTTC
38719064 TTTCTTTTTCT-TTTTATTTC
1 TTTC-TTTTCTGTTTTATTTC
38719084 CTTTTATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.03, C:0.15, G:0.05, T:0.78
Consensus pattern (20 bp):
TTTCTTTTCTGTTTTATTTC
Found at i:38719250 original size:31 final size:28
Alignment explanation
Indices: 38719214--38719281 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
38719204 TTGTCTTTAT
**
38719214 TTAATTTATTTCTTAATATAATATTTATAA
1 TTAATTTATTTAATAATAT-A-ATTTATAA
* *
38719244 TGTAATTAATTTAATAATATACTTTATAA
1 T-TAATTTATTTAATAATATAATTTATAA
38719273 TTAATTTAT
1 TTAATTTAT
38719282 ATATTTATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.22
29 8 0.25
30 2 0.06
31 15 0.47
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.54
Consensus pattern (28 bp):
TTAATTTATTTAATAATATAATTTATAA
Found at i:38719298 original size:21 final size:20
Alignment explanation
Indices: 38719260--38719298 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
38719250 TAATTTAATA
*
38719260 ATATACTTTATAATTAATTT
1 ATATACTTTATAAATAATTT
*
38719280 ATATATTTATATAAATAAT
1 ATATACTT-TATAAATAAT
38719299 AATATAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
ATATACTTTATAAATAATTT
Found at i:38724241 original size:21 final size:21
Alignment explanation
Indices: 38724199--38724241 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
38724189 TTCACTATAC
*
38724199 ATTCTTTCATCAGTATCATTT
1 ATTCTTTCATCAGCATCATTT
*
38724220 ATTCTTTCTTCAGACATC-TTT
1 ATTCTTTCATCAG-CATCATTT
38724241 A
1 A
38724242 ATCTATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.23, C:0.21, G:0.05, T:0.51
Consensus pattern (21 bp):
ATTCTTTCATCAGCATCATTT
Found at i:38725352 original size:39 final size:37
Alignment explanation
Indices: 38725285--38725377 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
38725275 ACCAGAATGG
* *
38725285 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
38725324 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
38725361 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
38725378 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:38725738 original size:3 final size:3
Alignment explanation
Indices: 38725730--38725777 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
38725720 ATTCCCACTC
* * * *
38725730 ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA CTA ATA CTA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
38725778 CTTACCTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:38725778 original size:18 final size:18
Alignment explanation
Indices: 38725731--38725779 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
38725721 TTCCCACTCA
*
38725731 TAATAATAATAATAATAC
1 TAATAATAATACTAATAC
38725749 TAATAATAATACTAATAC
1 TAATAATAATACTAATAC
*
38725767 TAATATTAATACT
1 TAATAATAATACT
38725780 TACCTCACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATAATAATACTAATAC
Found at i:38725779 original size:12 final size:12
Alignment explanation
Indices: 38725730--38725777 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
38725720 ATTCCCACTC
*
38725730 ATAATAATAATA
1 ATAATACTAATA
38725742 ATAATACTAATA
1 ATAATACTAATA
38725754 ATAATACTAATA
1 ATAATACTAATA
* *
38725766 CTAATATTAATA
1 ATAATACTAATA
38725778 CTTACCTCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATACTAATA
Found at i:38726517 original size:20 final size:20
Alignment explanation
Indices: 38726483--38726522 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
38726473 TTCTATTCTG
*
38726483 TTTCTTTTCTGTTTTGTTTC
1 TTTCTTTTCTGTTTTATTTC
38726503 TTTCTTTTTCT-TTTTATTTC
1 TTTC-TTTTCTGTTTTATTTC
38726523 CTTTTATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.03, C:0.15, G:0.05, T:0.78
Consensus pattern (20 bp):
TTTCTTTTCTGTTTTATTTC
Found at i:38726689 original size:31 final size:28
Alignment explanation
Indices: 38726653--38726720 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
38726643 TTGTCTTTAT
**
38726653 TTAATTTATTTCTTAATATAATATTTATAA
1 TTAATTTATTTAATAATAT-A-ATTTATAA
* *
38726683 TGTAATTAATTTAATAATATACTTTATAA
1 T-TAATTTATTTAATAATATAATTTATAA
38726712 TTAATTTAT
1 TTAATTTAT
38726721 ATATTTATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.22
29 8 0.25
30 2 0.06
31 15 0.47
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.54
Consensus pattern (28 bp):
TTAATTTATTTAATAATATAATTTATAA
Found at i:38726737 original size:21 final size:20
Alignment explanation
Indices: 38726699--38726737 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
38726689 TAATTTAATA
*
38726699 ATATACTTTATAATTAATTT
1 ATATACTTTATAAATAATTT
*
38726719 ATATATTTATATAAATAAT
1 ATATACTT-TATAAATAAT
38726738 AATATAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
ATATACTTTATAAATAATTT
Found at i:38733264 original size:16 final size:18
Alignment explanation
Indices: 38733243--38733275 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
38733233 TATCTTTGAT
38733243 AAATT-ATTAT-TTTTTA
1 AAATTAATTATGTTTTTA
38733259 AAATTAATTATGTTTTT
1 AAATTAATTATGTTTTT
38733276 CTTAAATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 5 0.33
18 5 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
AAATTAATTATGTTTTTA
Found at i:38745342 original size:34 final size:34
Alignment explanation
Indices: 38745296--38745361 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
38745286 TGACTGCAAC
38745296 AACACTTCCATGCTAAAAACATTCAAACCCAAAT
1 AACACTTCCATGCTAAAAACATTCAAACCCAAAT
*
38745330 AACACTTTCATGCTAAAAACATTCAAACCCAA
1 AACACTTCCATGCTAAAAACATTCAAACCCAA
38745362 GTAAGATTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.47, C:0.29, G:0.03, T:0.21
Consensus pattern (34 bp):
AACACTTCCATGCTAAAAACATTCAAACCCAAAT
Found at i:38755140 original size:46 final size:46
Alignment explanation
Indices: 38755065--38755177 Score: 172
Period size: 46 Copynumber: 2.4 Consensus size: 46
38755055 GCTGTAAACA
* *
38755065 AGACAAATTAAATTAGTTTAAGACAACTTAAATTCCTGTAATAATTT
1 AGACAAATTAAATGA-CTTAAGACAACTTAAATTCCTGTAATAATTT
* *
38755112 AGACAAATTAAATGACTTAAGACAACTTAAATTGCTGTAGTAATTT
1 AGACAAATTAAATGACTTAAGACAACTTAAATTCCTGTAATAATTT
*
38755158 AGATAAATTAAATGACTTAA
1 AGACAAATTAAATGACTTAA
38755178 CTTATTAATA
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
46 47 0.77
47 14 0.23
ACGTcount: A:0.46, C:0.10, G:0.11, T:0.34
Consensus pattern (46 bp):
AGACAAATTAAATGACTTAAGACAACTTAAATTCCTGTAATAATTT
Found at i:38761730 original size:46 final size:47
Alignment explanation
Indices: 38761673--38761784 Score: 151
Period size: 46 Copynumber: 2.4 Consensus size: 47
38761663 GCTGTAAACA
* * *
38761673 AGACAAATTAAATTG-TTTAAGACAACTTAAATTCCTGTA-ATAATTT
1 AGACAAATTAAATTGACTTAAGACAACTTAAATTCCTATAGA-AATGT
*
38761719 AGACAAATTAAA-TGACTTAAGACAACTTAAATTGCTATAGAAATGT
1 AGACAAATTAAATTGACTTAAGACAACTTAAATTCCTATAGAAATGT
38761765 AGACAAATTAAA-TGACTTAA
1 AGACAAATTAAATTGACTTAA
38761785 CTTATTAATA
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
45 2 0.03
46 57 0.95
47 1 0.02
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (47 bp):
AGACAAATTAAATTGACTTAAGACAACTTAAATTCCTATAGAAATGT
Found at i:38768649 original size:14 final size:14
Alignment explanation
Indices: 38768628--38768666 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
38768618 GGAGAAGATG
38768628 AAAAAAGAAGA-AAA
1 AAAAAAGAA-ATAAA
*
38768642 ATAAAAGAAATAAA
1 AAAAAAGAAATAAA
38768656 AAAAAAGAAAT
1 AAAAAAGAAAT
38768667 GGGGACATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 1 0.05
14 21 0.95
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.08
Consensus pattern (14 bp):
AAAAAAGAAATAAA
Found at i:38771097 original size:31 final size:29
Alignment explanation
Indices: 38771054--38771115 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 29
38771044 TTTTATAAAT
*
38771054 AATTAATATTTAT-TAATTAAAAATATTTAC
1 AATTAATATTTATAT-ATT-AAAATATTAAC
*
38771084 AATTTATATTTTATATATTAAAATATTAAC
1 AATTAATA-TTTATATATTAAAATATTAAC
38771114 AA
1 AA
38771116 CAAGTTATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 19 0.68
31 8 0.29
32 1 0.04
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (29 bp):
AATTAATATTTATATATTAAAATATTAAC
Found at i:38771301 original size:13 final size:13
Alignment explanation
Indices: 38771285--38771334 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
38771275 TTTAAACTAA
38771285 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
38771298 ACTTCTCAAAATC
1 ACTTTTCAAAAGC
* *
38771311 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
*
38771324 ACTTTTTAAAA
1 ACTTTTCAAAA
38771335 ACAATGAAGA
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.34
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:38771586 original size:12 final size:12
Alignment explanation
Indices: 38771571--38771596 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
38771561 TTTTTAAACA
38771571 TTTTTATAATTT
1 TTTTTATAATTT
38771583 TTTTTATAATTT
1 TTTTTATAATTT
38771595 TT
1 TT
38771597 AAATTTTAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTATAATTT
Found at i:38771586 original size:21 final size:20
Alignment explanation
Indices: 38771560--38771603 Score: 61
Period size: 22 Copynumber: 2.1 Consensus size: 20
38771550 ATAATTCTAA
38771560 TTTTTTAAACATTTTTATAATT
1 TTTTTTAAA-ATTTTTA-AATT
*
38771582 TTTTTTATAATTTTTAAATT
1 TTTTTTAAAATTTTTAAATT
38771602 TT
1 TT
38771604 AACAAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.29
21 7 0.33
22 8 0.38
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTTTAAAATTTTTAAATT
Found at i:38772113 original size:7 final size:7
Alignment explanation
Indices: 38772087--38772120 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
38772077 TTATATATAT
38772087 TTTTTAA
1 TTTTTAA
38772094 TTTGTTAA
1 TTT-TTAA
*
38772102 ATTTTAA
1 TTTTTAA
38772109 TTTTTAA
1 TTTTTAA
38772116 TTTTT
1 TTTTT
38772121 TTAAATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (7 bp):
TTTTTAA
Found at i:38772114 original size:22 final size:23
Alignment explanation
Indices: 38772087--38772129 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
38772077 TTATATATAT
38772087 TTTTTAA-TTTGTTAAATTTTAA
1 TTTTTAATTTTGTTAAATTTTAA
*
38772109 TTTTTAATTTTTTTAAATTTT
1 TTTTTAATTTTGTTAAATTTT
38772130 TATGAAGTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (23 bp):
TTTTTAATTTTGTTAAATTTTAA
Found at i:38784434 original size:34 final size:34
Alignment explanation
Indices: 38784395--38784461 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
38784385 TTTACAGTAT
* *
38784395 TATTTGGTGTGA-TGGATGGATTAGCTTATACGAG
1 TATTTGGTGT-ACTGGATGAATTAGCTCATACGAG
38784429 TATTTGGTGTACTGGATGAATTAGCTCATACGA
1 TATTTGGTGTACTGGATGAATTAGCTCATACGA
38784462 TCATCTGGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 1 0.03
34 29 0.97
ACGTcount: A:0.25, C:0.09, G:0.28, T:0.37
Consensus pattern (34 bp):
TATTTGGTGTACTGGATGAATTAGCTCATACGAG
Found at i:38784478 original size:34 final size:34
Alignment explanation
Indices: 38784407--38784480 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 34
38784397 TTTGGTGTGA
* * * *
38784407 TGGATGGATTAGCTTATACGAGTATTTGGTGTAC
1 TGGATGAATTAGCTCATACGAGTATCTGGTATAC
*
38784441 TGGATGAATTAGCTCATACGA-TCATCTGGTATGC
1 TGGATGAATTAGCTCATACGAGT-ATCTGGTATAC
38784475 TGGATG
1 TGGATG
38784481 GTTAACCGTG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
33 1 0.03
34 33 0.97
ACGTcount: A:0.24, C:0.12, G:0.28, T:0.35
Consensus pattern (34 bp):
TGGATGAATTAGCTCATACGAGTATCTGGTATAC
Found at i:38785445 original size:30 final size:31
Alignment explanation
Indices: 38785409--38785471 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
38785399 CAATTTTTTG
38785409 TCTGATTTGTTTCGATTT-GTCCCTGAATGT
1 TCTGATTTGTTTCGATTTGGTCCCTGAATGT
* *
38785439 TCTGATTTGTTTTGATTTGGTCCTTGAATGT
1 TCTGATTTGTTTCGATTTGGTCCCTGAATGT
38785470 TC
1 TC
38785472 CTAACCTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 17 0.57
31 13 0.43
ACGTcount: A:0.13, C:0.14, G:0.21, T:0.52
Consensus pattern (31 bp):
TCTGATTTGTTTCGATTTGGTCCCTGAATGT
Found at i:38795294 original size:20 final size:21
Alignment explanation
Indices: 38795269--38795324 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 21
38795259 TTCCTATGTT
*
38795269 ATTTTTATATTTGA-AAATTA
1 ATTTTTATATTTAATAAATTA
*
38795289 ATTTTT-TATTTAATAAATTT
1 ATTTTTATATTTAATAAATTA
* *
38795309 ATATTTATATATAATA
1 ATTTTTATATTTAATA
38795325 TTGTTTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 6 0.20
20 16 0.53
21 8 0.27
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
ATTTTTATATTTAATAAATTA
Found at i:38801973 original size:13 final size:13
Alignment explanation
Indices: 38801957--38801994 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
38801947 TTTAAATCAA
38801957 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
38801970 ACTTTTTC-ACAGC
1 AC-TTTTCAAAAGC
38801983 ACTTTTCAAAAG
1 ACTTTTCAAAAG
38801995 TATTGCCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
12 5 0.24
13 11 0.52
14 5 0.24
ACGTcount: A:0.34, C:0.24, G:0.08, T:0.34
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:38803055 original size:9 final size:9
Alignment explanation
Indices: 38803029--38803110 Score: 56
Period size: 10 Copynumber: 8.4 Consensus size: 9
38803019 TTATACCATC
38803029 TTTTATGAAT
1 TTTTAT-AAT
* *
38803039 TCTAATAAT
1 TTTTATAAT
38803048 TTTTATAATT
1 TTTTATAA-T
*
38803058 TTTTACAAT
1 TTTTATAAT
*
38803067 ATTTTAGAAT
1 -TTTTATAAT
* *
38803077 TTCTAATAAA
1 TT-TTATAAT
38803087 TTTTATAGTAT
1 TTTTATA--AT
38803098 TTTTATAAT
1 TTTTATAAT
38803107 TTTT
1 TTTT
38803111 TACAATTTCT
Statistics
Matches: 56, Mismatches: 11, Indels: 11
0.72 0.14 0.14
Matches are distributed among these distances:
9 22 0.39
10 26 0.46
11 8 0.14
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.59
Consensus pattern (9 bp):
TTTTATAAT
Found at i:38803062 original size:10 final size:10
Alignment explanation
Indices: 38803043--38803118 Score: 57
Period size: 10 Copynumber: 7.7 Consensus size: 10
38803033 ATGAATTCTA
38803043 ATAA-TTTTT
1 ATAATTTTTT
38803052 ATAATTTTTT
1 ATAATTTTTT
* *
38803062 ACAATATTTT
1 ATAATTTTTT
* * *
38803072 AGAATTTCTA
1 ATAATTTTTT
*
38803082 ATAA-ATTTT
1 ATAATTTTTT
*
38803091 ATAGTATTTTT
1 ATAAT-TTTTT
38803102 ATAATTTTTT
1 ATAATTTTTT
*
38803112 ACAATTT
1 ATAATTT
38803119 CTTAAAAAAT
Statistics
Matches: 50, Mismatches: 14, Indels: 5
0.72 0.20 0.07
Matches are distributed among these distances:
9 9 0.18
10 33 0.66
11 8 0.16
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.58
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:38803091 original size:19 final size:19
Alignment explanation
Indices: 38803029--38803091 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
38803019 TTATACCATC
*
38803029 TTTTATGAA-TTCTAATAAT
1 TTTTA-GAATTTCTAATAAA
* * * *
38803048 TTTTATAATTTTTTACAATA
1 TTTTAGAATTTCTAATAA-A
38803068 TTTTAGAATTTCTAATAAA
1 TTTTAGAATTTCTAATAAA
38803087 TTTTA
1 TTTTA
38803092 TAGTATTTTT
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
18 2 0.06
19 17 0.52
20 14 0.42
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.56
Consensus pattern (19 bp):
TTTTAGAATTTCTAATAAA
Found at i:38803101 original size:40 final size:39
Alignment explanation
Indices: 38803013--38803129 Score: 119
Period size: 39 Copynumber: 2.9 Consensus size: 39
38803003 AGAACTTTCA
* * * *
38803013 ATAATTTTATACCATCTTTTATGAA-TTCTAATAATTTTT
1 ATAATTTTTTACAATATTTTA-GAATTTCTAATAAATTTT
38803052 ATAATTTTTTACAATATTTTAGAATTTCTAATAAATTTT
1 ATAATTTTTTACAATATTTTAGAATTTCTAATAAATTTT
* * * * *
38803091 ATAGTATTTTTATAATTTTTTACAATTTCTTAAAAAATT
1 ATAAT-TTTTTACAATATTTTAGAATTTC-TAATAAATT
38803130 ATAACATATT
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
38 3 0.05
39 35 0.53
40 20 0.30
41 8 0.12
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.54
Consensus pattern (39 bp):
ATAATTTTTTACAATATTTTAGAATTTCTAATAAATTTT
Found at i:38813374 original size:6 final size:5
Alignment explanation
Indices: 38813325--38813356 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
38813315 TTAACACAAT
38813325 AATAA AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AATAA AA
38813357 ATCAAAGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:38814850 original size:46 final size:46
Alignment explanation
Indices: 38814793--38814884 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
38814783 TGTCCTTAGT
38814793 CTAATTGGAAATGAACAAACTGAATGTAAGACTAATATGTCCTTTA
1 CTAATTGGAAATGAACAAACTGAATGTAAGACTAATATGTCCTTTA
38814839 CTAATTGGAAATGAACAAACTGAATGTAAGACTAATATGTCCTTTA
1 CTAATTGGAAATGAACAAACTGAATGTAAGACTAATATGTCCTTTA
38814885 TCAAGTCTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.30
Consensus pattern (46 bp):
CTAATTGGAAATGAACAAACTGAATGTAAGACTAATATGTCCTTTA
Found at i:38817270 original size:57 final size:57
Alignment explanation
Indices: 38817174--38817285 Score: 138
Period size: 57 Copynumber: 2.0 Consensus size: 57
38817164 AGAAATGGTG
* *
38817174 AAATGGAGAATAGGAAACATTTGGAAATCATTAAAGTTTTCTCCAAAATGAAAATGA
1 AAATGGAGAATAGGAAACATTTGGAAATAATTAAAGTTTTCTCCAAAATAAAAATGA
* ** *
38817231 AAATGGAGAA-ATGAAATCATTTGGAAATGAATT-TTGTTTTCTTCAAAATAAAAAT
1 AAATGGAGAATAGGAAA-CATTTGGAAAT-AATTAAAGTTTTCTCCAAAATAAAAAT
38817286 AAGAAATGAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
56 5 0.11
57 39 0.83
58 3 0.06
ACGTcount: A:0.46, C:0.07, G:0.16, T:0.30
Consensus pattern (57 bp):
AAATGGAGAATAGGAAACATTTGGAAATAATTAAAGTTTTCTCCAAAATAAAAATGA
Found at i:38825891 original size:22 final size:24
Alignment explanation
Indices: 38825866--38825914 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 24
38825856 TTTCGATCTC
*
38825866 TTTTTCTTT-TTCTCTC-ATTT-A
1 TTTTTTTTTCTTCTCTCAATTTCA
*
38825887 TTTTTTTTTCTTTTCTCAATTTCA
1 TTTTTTTTTCTTCTCTCAATTTCA
38825911 TTTT
1 TTTT
38825915 GGATTCGTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 8 0.35
22 6 0.26
23 4 0.17
24 5 0.22
ACGTcount: A:0.10, C:0.16, G:0.00, T:0.73
Consensus pattern (24 bp):
TTTTTTTTTCTTCTCTCAATTTCA
Found at i:38825913 original size:24 final size:25
Alignment explanation
Indices: 38825866--38825914 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
38825856 TTTCGATCTC
*
38825866 TTTTTCTTTTTCTCTCATTTATTTT
1 TTTTTCTTTTTCTCTAATTTATTTT
38825891 TTTTTC-TTTTCTC-AATTTCATTTT
1 TTTTTCTTTTTCTCTAATTT-ATTTT
38825915 GGATTCGTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 4 0.18
24 12 0.55
25 6 0.27
ACGTcount: A:0.10, C:0.16, G:0.00, T:0.73
Consensus pattern (25 bp):
TTTTTCTTTTTCTCTAATTTATTTT
Found at i:38831908 original size:41 final size:41
Alignment explanation
Indices: 38831851--38832034 Score: 160
Period size: 41 Copynumber: 4.5 Consensus size: 41
38831841 TAAAATGATT
* *
38831851 CACCGGCA-TATAGCCTGCTAGGCTTAAAG-CTTG-ATTCAGAA
1 CACCGGCATTA-AGCCTGCTAGACTTAAAGTC-TGAAAT-AGAA
* ***
38831892 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTT
1 CACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATAGAA
***
38831933 CACCGGCATTAAGCCTGCTAGACTTAAAGTCT-AAATTATTT
1 CACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAA-TAGAA
* * * ***
38831974 CACTGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTATTT
1 CACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATAGAA
*
38832015 CACTGGCATTAAGCCTGCTA
1 CACCGGCATTAAGCCTGCTA
38832035 AGCACAGAGC
Statistics
Matches: 128, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
40 3 0.02
41 118 0.92
42 7 0.05
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATAGAA
Found at i:38832050 original size:41 final size:40
Alignment explanation
Indices: 38831896--38832034 Score: 224
Period size: 41 Copynumber: 3.4 Consensus size: 40
38831886 TCAGAACACC
* *
38831896 GGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTTCACC
1 GGCATTAAGCCTGCTAGAC-TAAAGTCTGAATTATTTCACT
*
38831937 GGCATTAAGCCTGCTAGACTTAAAGTCTAAATTATTTCACT
1 GGCATTAAGCCTGCTAGAC-TAAAGTCTGAATTATTTCACT
38831978 GGCATTAAGCCTGCTAGACGTAAAGTCTGAATTATTTCACT
1 GGCATTAAGCCTGCTAGAC-TAAAGTCTGAATTATTTCACT
38832019 GGCATTAAGCCTGCTA
1 GGCATTAAGCCTGCTA
38832035 AGCACAGAGC
Statistics
Matches: 92, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 92 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (40 bp):
GGCATTAAGCCTGCTAGACTAAAGTCTGAATTATTTCACT
Found at i:38832230 original size:61 final size:61
Alignment explanation
Indices: 38832147--38832277 Score: 165
Period size: 61 Copynumber: 2.1 Consensus size: 61
38832137 ACATGAATAA
* * * *
38832147 ATATATATAATTCATAACATTAAGTTTAGCTCAAAGAACTTGTATA-TTACATTCGAACCTC
1 ATATATATAATTCAAAACATTAAATTTAGCTCAAAGAACTTGTA-ACCTACATTCGAACCAC
* * * * *
38832208 ATATGTATAGTTCAAAACATTAAATTTAGCTCAATGAATTTGTAACCTATATTCGAACCAC
1 ATATATATAATTCAAAACATTAAATTTAGCTCAAAGAACTTGTAACCTACATTCGAACCAC
38832269 ATATATATA
1 ATATATATA
38832278 TAAATGTATA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
60 1 0.02
61 58 0.98
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.36
Consensus pattern (61 bp):
ATATATATAATTCAAAACATTAAATTTAGCTCAAAGAACTTGTAACCTACATTCGAACCAC
Found at i:38837373 original size:12 final size:12
Alignment explanation
Indices: 38837356--38837380 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
38837346 ATGAATAAAG
38837356 AATTAAAGAAAA
1 AATTAAAGAAAA
38837368 AATTAAAGAAAA
1 AATTAAAGAAAA
38837380 A
1 A
38837381 GATGATACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (12 bp):
AATTAAAGAAAA
Found at i:38838642 original size:54 final size:54
Alignment explanation
Indices: 38838578--38838848 Score: 281
Period size: 54 Copynumber: 5.0 Consensus size: 54
38838568 GTCTCAAACT
* * * *
38838578 GGTTGAGACACAAGCATGTAGACCAAGTCAGTGAGTTACACGGTCTGACACACA
1 GGTTGAGACACAGGCGTGTGGACCAAGTCAGTGAGTTACACGGTCTGACACACG
* * * * * * *
38838632 GGTTGGGACACAGGCGTATTGACCAATTCAATGAGTTACACGGTCTGGCACATG
1 GGTTGAGACACAGGCGTGTGGACCAAGTCAGTGAGTTACACGGTCTGACACACG
* * * * * * *
38838686 GGTTGAGACACAGGCATGTGGACCAAGTCTGTGAGTTGCATGATCTGGCACATG
1 GGTTGAGACACAGGCGTGTGGACCAAGTCAGTGAGTTACACGGTCTGACACACG
* * * ** *
38838740 GGTTGAGACACGGGTGTGTCGACCAAGTTGGTGAGTTACACGGTGTGACACACG
1 GGTTGAGACACAGGCGTGTGGACCAAGTCAGTGAGTTACACGGTCTGACACACG
* * ** *
38838794 GGTTAAGACACGGGCGTGTGGACCAAGTCAGTGAGTTACACAATTTGACACACG
1 GGTTGAGACACAGGCGTGTGGACCAAGTCAGTGAGTTACACGGTCTGACACACG
38838848 G
1 G
38838849 TTCGGTACAT
Statistics
Matches: 177, Mismatches: 40, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 177 1.00
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (54 bp):
GGTTGAGACACAGGCGTGTGGACCAAGTCAGTGAGTTACACGGTCTGACACACG
Found at i:38841187 original size:203 final size:203
Alignment explanation
Indices: 38840838--38841245 Score: 816
Period size: 203 Copynumber: 2.0 Consensus size: 203
38840828 TGGATCACAC
38840838 AAGTGTGCCATGGTTGCGGGCTCCCATGCGCAACCCATGACACTAGATGTATGCTATGGGTATGC
1 AAGTGTGCCATGGTTGCGGGCTCCCATGCGCAACCCATGACACTAGATGTATGCTATGGGTATGC
38840903 TTTGTTAAGAGTAAGTATTAGAGTTAAATAGGAAGGTGAATTGTGTCAGTGCACAAATGGCCTGT
66 TTTGTTAAGAGTAAGTATTAGAGTTAAATAGGAAGGTGAATTGTGTCAGTGCACAAATGGCCTGT
38840968 AAAGTGAGTTTGTGTTTTTCTCTGCGGTATTGTCTAAAGGGGTCTGTTAGGAATTTAAAAAAAAT
131 AAAGTGAGTTTGTGTTTTTCTCTGCGGTATTGTCTAAAGGGGTCTGTTAGGAATTTAAAAAAAAT
38841033 TGAAAGGA
196 TGAAAGGA
38841041 AAGTGTGCCATGGTTGCGGGCTCCCATGCGCAACCCATGACACTAGATGTATGCTATGGGTATGC
1 AAGTGTGCCATGGTTGCGGGCTCCCATGCGCAACCCATGACACTAGATGTATGCTATGGGTATGC
38841106 TTTGTTAAGAGTAAGTATTAGAGTTAAATAGGAAGGTGAATTGTGTCAGTGCACAAATGGCCTGT
66 TTTGTTAAGAGTAAGTATTAGAGTTAAATAGGAAGGTGAATTGTGTCAGTGCACAAATGGCCTGT
38841171 AAAGTGAGTTTGTGTTTTTCTCTGCGGTATTGTCTAAAGGGGTCTGTTAGGAATTTAAAAAAAAT
131 AAAGTGAGTTTGTGTTTTTCTCTGCGGTATTGTCTAAAGGGGTCTGTTAGGAATTTAAAAAAAAT
38841236 TGAAAGGA
196 TGAAAGGA
38841244 AA
1 AA
38841246 AGTCCATGTT
Statistics
Matches: 205, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
203 205 1.00
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (203 bp):
AAGTGTGCCATGGTTGCGGGCTCCCATGCGCAACCCATGACACTAGATGTATGCTATGGGTATGC
TTTGTTAAGAGTAAGTATTAGAGTTAAATAGGAAGGTGAATTGTGTCAGTGCACAAATGGCCTGT
AAAGTGAGTTTGTGTTTTTCTCTGCGGTATTGTCTAAAGGGGTCTGTTAGGAATTTAAAAAAAAT
TGAAAGGA
Found at i:38841445 original size:27 final size:26
Alignment explanation
Indices: 38841415--38841469 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 26
38841405 TAACATGAAA
*
38841415 GAATTCCTTGGTGGCAAACTCTGTAAG
1 GAATTCCTTCGTGGCAAACTCT-TAAG
*
38841442 GAATTCCTTCGTGGCACACTCTTAAG
1 GAATTCCTTCGTGGCAAACTCTTAAG
38841468 GA
1 GA
38841470 CCACCTTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (26 bp):
GAATTCCTTCGTGGCAAACTCTTAAG
Found at i:38841476 original size:26 final size:27
Alignment explanation
Indices: 38841420--38841476 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
38841410 TGAAAGAATT
* **
38841420 CCTTGGTGGCAAACTCTGTAAGGAATT
1 CCTTCGTGGCAAACTCTGTAAGGAACA
* *
38841447 CCTTCGTGGCACACTCT-TAAGGACCA
1 CCTTCGTGGCAAACTCTGTAAGGAACA
38841473 CCTT
1 CCTT
38841477 TATGGCGAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (27 bp):
CCTTCGTGGCAAACTCTGTAAGGAACA
Found at i:38844562 original size:26 final size:27
Alignment explanation
Indices: 38844507--38844562 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
38844497 TATACAAGAA
38844507 ATGTCTTTAACACCATTTAAAAAAATC
1 ATGTCTTTAACACCATTTAAAAAAATC
*
38844534 ATGTTTTTAACACCATTT-AAAAAATC
1 ATGTCTTTAACACCATTTAAAAAAATC
38844560 ATG
1 ATG
38844563 ACAATAGGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 11 0.39
27 17 0.61
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (27 bp):
ATGTCTTTAACACCATTTAAAAAAATC
Found at i:38847475 original size:40 final size:41
Alignment explanation
Indices: 38847409--38847485 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 41
38847399 ACTTATGAAA
* *
38847409 TTCGAGATAGCTTTGGTTATTAATGGCACTTAGTGTGCGAT
1 TTCGAGATAGATTTGGCTATTAATGGCACTTAGTGTGCGAT
*
38847450 TTCGA-ATAGATTTGGCTA-TATATGGCACTTGGTGTG
1 TTCGAGATAGATTTGGCTATTA-ATGGCACTTAGTGTG
38847486 TGAAATTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 2 0.06
40 25 0.78
41 5 0.16
ACGTcount: A:0.22, C:0.12, G:0.27, T:0.39
Consensus pattern (41 bp):
TTCGAGATAGATTTGGCTATTAATGGCACTTAGTGTGCGAT
Found at i:38848334 original size:24 final size:24
Alignment explanation
Indices: 38848307--38848391 Score: 125
Period size: 24 Copynumber: 3.5 Consensus size: 24
38848297 TTTACATGTT
*
38848307 TTAATGCTATCCATTTTGAGCATA
1 TTAATGCTGTCCATTTTGAGCATA
38848331 TTAATGCTGTCCATTTTGAGCATA
1 TTAATGCTGTCCATTTTGAGCATA
* * *
38848355 TTAATGATGTCAAGTTTGAGCATA
1 TTAATGCTGTCCATTTTGAGCATA
*
38848379 TGAATGCTGTCCA
1 TTAATGCTGTCCA
38848392 AAACAGATAA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (24 bp):
TTAATGCTGTCCATTTTGAGCATA
Found at i:38856389 original size:24 final size:24
Alignment explanation
Indices: 38856362--38856409 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
38856352 CGATCGACCC
38856362 ACTTCTAAGTCCAACTACGAGCTT
1 ACTTCTAAGTCCAACTACGAGCTT
38856386 ACTTCTAAGTCCAACTACGAGCTT
1 ACTTCTAAGTCCAACTACGAGCTT
38856410 TCTAAATGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (24 bp):
ACTTCTAAGTCCAACTACGAGCTT
Found at i:38873502 original size:25 final size:25
Alignment explanation
Indices: 38873424--38873543 Score: 98
Period size: 25 Copynumber: 4.8 Consensus size: 25
38873414 TTATAGAGAG
* *
38873424 TTCGCCACAAAGGCTTTACAAAATA
1 TTCGCCACAAAGGCCTTACAGAATA
* * **** *
38873449 TTCACCAAAAATTATTTACAAAATA
1 TTCGCCACAAAGGCCTTACAGAATA
* *
38873474 TTCGCCACAAAGGCCTTATAGAGA-G
1 TTCGCCACAAAGGCCTTACAGA-ATA
**
38873499 TTCGCCACAAAGGTTTTACAGAATA
1 TTCGCCACAAAGGCCTTACAGAATA
*
38873524 TTCGCCACAAAGGCGTTACA
1 TTCGCCACAAAGGCCTTACA
38873544 AAGAGTCTTC
Statistics
Matches: 73, Mismatches: 20, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
24 1 0.01
25 71 0.97
26 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (25 bp):
TTCGCCACAAAGGCCTTACAGAATA
Found at i:38873561 original size:50 final size:50
Alignment explanation
Indices: 38873424--38873549 Score: 139
Period size: 50 Copynumber: 2.5 Consensus size: 50
38873414 TTATAGAGAG
* * * **
38873424 TTCGCCACAAAGGCTTTACAAA-ATATTCACCA-AAAATTATTTACAAAATA
1 TTCGCCACAAAGGCCTTACAAAGA-GTTCGCCACAAAGGT-TTTACAAAATA
* * *
38873474 TTCGCCACAAAGGCCTTATAGAGAGTTCGCCACAAAGGTTTTACAGAATA
1 TTCGCCACAAAGGCCTTACAAAGAGTTCGCCACAAAGGTTTTACAAAATA
*
38873524 TTCGCCACAAAGGCGTTACAAAGAGT
1 TTCGCCACAAAGGCCTTACAAAGAGT
38873550 CTTCCATAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
50 58 0.92
51 5 0.08
ACGTcount: A:0.39, C:0.21, G:0.15, T:0.25
Consensus pattern (50 bp):
TTCGCCACAAAGGCCTTACAAAGAGTTCGCCACAAAGGTTTTACAAAATA
Found at i:38876187 original size:19 final size:20
Alignment explanation
Indices: 38876163--38876200 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
38876153 TAGAATTTTT
38876163 TTATAAGCTTTTAT-AATAA
1 TTATAAGCTTTTATGAATAA
*
38876182 TTATAAGTTTTTATGAATA
1 TTATAAGCTTTTATGAATA
38876201 TTTTATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.50
Consensus pattern (20 bp):
TTATAAGCTTTTATGAATAA
Found at i:38876205 original size:40 final size:39
Alignment explanation
Indices: 38876114--38876207 Score: 95
Period size: 40 Copynumber: 2.4 Consensus size: 39
38876104 TTTAAACTTA
* * *
38876114 TTATGAA-GTTTTATAAGTTTTATAACTATTTGTAGTAT
1 TTATGAATATTTTATAAGTTTTATAACTAATTATAGTAT
* *
38876152 TTA-GAATTTTTTTATAAGCTTTTATAA-TAATTATAAGTTT
1 TTATGAA-TATTTTATAAG-TTTTATAACTAATTAT-AGTAT
38876192 TTATGAATATTTTATA
1 TTATGAATATTTTATA
38876208 TATTTTTTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
37 3 0.07
38 3 0.07
39 14 0.30
40 23 0.50
41 3 0.07
ACGTcount: A:0.34, C:0.02, G:0.10, T:0.54
Consensus pattern (39 bp):
TTATGAATATTTTATAAGTTTTATAACTAATTATAGTAT
Found at i:38876224 original size:18 final size:18
Alignment explanation
Indices: 38876201--38876267 Score: 57
Period size: 17 Copynumber: 3.7 Consensus size: 18
38876191 TTTATGAATA
38876201 TTTTATATATTTTTTTAG
1 TTTTATATATTTTTTTAG
* *
38876219 TTTTATAT-TTTTATAAG
1 TTTTATATATTTTTTTAG
***
38876236 -TTTATATAAACTTTTAG
1 TTTTATATATTTTTTTAG
38876253 TATATTATATATTTT
1 T-T-TTATATATTTT
38876268 AAATATATTG
Statistics
Matches: 35, Mismatches: 10, Indels: 6
0.69 0.20 0.12
Matches are distributed among these distances:
16 7 0.20
17 11 0.31
18 8 0.23
19 1 0.03
20 8 0.23
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.64
Consensus pattern (18 bp):
TTTTATATATTTTTTTAG
Found at i:38876405 original size:17 final size:17
Alignment explanation
Indices: 38876383--38876437 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
38876373 TTGATGTTAA
*
38876383 TAATTAATGGAGAAACT
1 TAATTAATAGAGAAACT
* **
38876400 TAATTAA-AGACAAAAA
1 TAATTAATAGAGAAACT
*
38876416 GAATTAATAGAGAAACT
1 TAATTAATAGAGAAACT
38876433 TAATT
1 TAATT
38876438 GAATTTATTT
Statistics
Matches: 28, Mismatches: 9, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
16 11 0.39
17 17 0.61
ACGTcount: A:0.55, C:0.05, G:0.13, T:0.27
Consensus pattern (17 bp):
TAATTAATAGAGAAACT
Found at i:38877770 original size:19 final size:19
Alignment explanation
Indices: 38877708--38877777 Score: 65
Period size: 19 Copynumber: 3.6 Consensus size: 19
38877698 AGATCCCAAA
38877708 TATATTATTTTAGGAAATTTTT
1 TATATTA-TTTA-G-AATTTTT
38877730 TA-ATT-TTTA-ACATTTTT
1 TATATTATTTAGA-ATTTTT
38877747 ATATATTATTTAGAATTTTT
1 -TATATTATTTAGAATTTTT
*
38877767 TATAATATTTA
1 TATATTATTTA
38877778 TATTTGGTGG
Statistics
Matches: 42, Mismatches: 1, Indels: 13
0.75 0.02 0.23
Matches are distributed among these distances:
16 1 0.02
17 6 0.14
18 2 0.05
19 17 0.40
20 10 0.24
21 4 0.10
22 2 0.05
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.60
Consensus pattern (19 bp):
TATATTATTTAGAATTTTT
Found at i:38877834 original size:18 final size:18
Alignment explanation
Indices: 38877813--38877850 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
38877803 GAATTGTTAT
38877813 AAAT-ATTTTGAGTTTTAA
1 AAATAATTTT-AGTTTTAA
*
38877831 AAATAATTTTATTTTTAA
1 AAATAATTTTAGTTTTAA
38877849 AA
1 AA
38877851 TTTTGAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (18 bp):
AAATAATTTTAGTTTTAA
Found at i:38892778 original size:24 final size:23
Alignment explanation
Indices: 38892733--38892783 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
38892723 AAATTCTCAA
*
38892733 TTTCATTTTCAATTTTAATTTCT
1 TTTCATTCTCAATTTTAATTTCT
*
38892756 CTTTCATTCTCAATCTTT-TTTTCT
1 -TTTCATTCTCAAT-TTTAATTTCT
38892780 TTTC
1 TTTC
38892784 TCTCACACTC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 4 0.17
24 17 0.71
25 3 0.12
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.65
Consensus pattern (23 bp):
TTTCATTCTCAATTTTAATTTCT
Found at i:38898232 original size:18 final size:18
Alignment explanation
Indices: 38898209--38898243 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
38898199 AGTTAAAATG
* *
38898209 AATCGAGTTATTTGAGTT
1 AATCGAATTATTCGAGTT
38898227 AATCGAATTATTCGAGT
1 AATCGAATTATTCGAGT
38898244 CAACTCAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (18 bp):
AATCGAATTATTCGAGTT
Found at i:38898551 original size:19 final size:20
Alignment explanation
Indices: 38898524--38898561 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
38898514 CTCCCTTAAC
38898524 CTTCAAAA-CTTTTTATTTT
1 CTTCAAAACCTTTTTATTTT
*
38898543 CTTCCAAACCTTTTTATTT
1 CTTCAAAACCTTTTTATTT
38898562 CCCCCTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.24, C:0.21, G:0.00, T:0.55
Consensus pattern (20 bp):
CTTCAAAACCTTTTTATTTT
Found at i:38903614 original size:126 final size:128
Alignment explanation
Indices: 38903381--38903637 Score: 321
Period size: 126 Copynumber: 2.0 Consensus size: 128
38903371 GAAAGTTACG
* **
38903381 AATTTAGTCATTGTACTTTAATTTGGTCATTTTTGGTCTCATATTTTTAAAATTTTTAAAATTTT
1 AATTTAGTCATTATACTTTAATTTGGTCATTTTTGGTCTCATATTTTTAAAATTTTTAAAATTGC
* *
38903446 AATCATTAACAAACGGTAATTGTTTAATTTAAGTTATATTA-T-TTT-CAAAATTTGGTTGGGC
66 AA-CATGAACAAACGGTAATTGTTTAATTTAAGTTATATTATTATTTCCAAAATTTGATTGGGC
* *
38903507 AATTTAGTCATTATACTTTAATTTGGTTATTTTTGGTCTCATATTTTTAAAA-TTTTAATCATTA
1 AATTTAGTCATTATACTTTAATTTGGTCATTTTTGGTCTCATATTTTTAAAATTTTTAA-AATT-
* * *
38903571 GCAA-ATGAGCTAAACGGTAATTGTTTAA-TTCA-TTAAATTTTATTATTTCCAAAATTTGATTG
64 GCAACATGAAC-AAACGGTAATTGTTTAATTTAAGTT--ATATTATTATTTCCAAAATTTGATTG
38903633 GGC
126 GGC
38903636 AA
1 AA
38903638 ACATACTATC
Statistics
Matches: 113, Mismatches: 10, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
124 2 0.02
125 13 0.12
126 75 0.66
127 3 0.03
128 3 0.03
129 17 0.15
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.48
Consensus pattern (128 bp):
AATTTAGTCATTATACTTTAATTTGGTCATTTTTGGTCTCATATTTTTAAAATTTTTAAAATTGC
AACATGAACAAACGGTAATTGTTTAATTTAAGTTATATTATTATTTCCAAAATTTGATTGGGC
Found at i:38903951 original size:28 final size:28
Alignment explanation
Indices: 38903892--38903951 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 28
38903882 TAAAATTTTA
*
38903892 AAATTCAAAAAGTAAATTAAAATGGACC
1 AAATTCAAAAAATAAATTAAAATGGACC
*
38903920 -AATTCAAAAAATATATTAAAAAT-GACC
1 AAATTCAAAAAATAAATT-AAAATGGACC
38903947 AAATT
1 AAATT
38903952 GAAGTATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 19 0.68
28 9 0.32
ACGTcount: A:0.58, C:0.10, G:0.07, T:0.25
Consensus pattern (28 bp):
AAATTCAAAAAATAAATTAAAATGGACC
Found at i:38905791 original size:13 final size:13
Alignment explanation
Indices: 38905762--38905790 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
38905752 ACTTAGTTAG
38905762 TTTTAGGTTTTTA
1 TTTTAGGTTTTTA
38905775 TTTTA-GTTTTTA
1 TTTTAGGTTTTTA
38905787 TTTT
1 TTTT
38905791 TGTAACAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.14, C:0.00, G:0.10, T:0.76
Consensus pattern (13 bp):
TTTTAGGTTTTTA
Found at i:38907378 original size:43 final size:43
Alignment explanation
Indices: 38907331--38907432 Score: 204
Period size: 43 Copynumber: 2.4 Consensus size: 43
38907321 TAAATCAAAT
38907331 TGAATTATGTTCAAGTGTAATGGTTATCTATGTTAAATTCATA
1 TGAATTATGTTCAAGTGTAATGGTTATCTATGTTAAATTCATA
38907374 TGAATTATGTTCAAGTGTAATGGTTATCTATGTTAAATTCATA
1 TGAATTATGTTCAAGTGTAATGGTTATCTATGTTAAATTCATA
38907417 TGAATTATGTTCAAGT
1 TGAATTATGTTCAAGT
38907433 ATGCTAACAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.44
Consensus pattern (43 bp):
TGAATTATGTTCAAGTGTAATGGTTATCTATGTTAAATTCATA
Found at i:38907384 original size:20 final size:20
Alignment explanation
Indices: 38907359--38907427 Score: 61
Period size: 20 Copynumber: 3.3 Consensus size: 20
38907349 AATGGTTATC
38907359 TATGTTAAATTCATATGAAT
1 TATGTTAAATTCATATGAAT
* *
38907379 TATGTTCAAGTGT-A-ATGGTTAT
1 TATGTT-AAAT-TCATAT-G-AAT
38907401 CTATGTTAAATTCATATGAAT
1 -TATGTTAAATTCATATGAAT
38907422 TATGTT
1 TATGTT
38907428 CAAGTATGCT
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
20 14 0.37
21 8 0.21
22 8 0.21
23 8 0.21
ACGTcount: A:0.33, C:0.06, G:0.14, T:0.46
Consensus pattern (20 bp):
TATGTTAAATTCATATGAAT
Found at i:38908730 original size:30 final size:29
Alignment explanation
Indices: 38908687--38908743 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
38908677 TTCGAGCTTG
38908687 GGGAAAAATGTAATTATG-CAAAAGTTTA
1 GGGAAAAATGTAATTATGACAAAAGTTTA
*
38908715 GGGACAAAATCGTAATTTTGACAAAAGTT
1 GGGA-AAAAT-GTAATTATGACAAAAGTT
38908744 GAGTCGAAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 4 0.16
29 5 0.20
30 8 0.32
31 8 0.32
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (29 bp):
GGGAAAAATGTAATTATGACAAAAGTTTA
Found at i:38909397 original size:102 final size:101
Alignment explanation
Indices: 38909217--38909554 Score: 419
Period size: 102 Copynumber: 3.3 Consensus size: 101
38909207 TGAACATTTA
* * *
38909217 TGTAGTACTGTGTGAAGGCTACTACGTGTATCAATAAATGATGGTCACATGTGTAGTACTAAGTG
1 TGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTACTAAGTG
* *
38909282 AAGGCTACAATGTGTACAGAGAAGCTTTGGTCACGTG
66 AAGGCTACTATGTGTACCGA-AAGCTTTGGTCACGTG
* * * *
38909319 TGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATATGTATTAGTAAGTG
1 TGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTACTAAGTG
38909384 AAGGCTACTATGTGTACCGAAAAGCTTTGGTCACGTG
66 AAGGCTACTATGTGTACCG-AAAGCTTTGGTCACGTG
* * *** * * *
38909421 TGTAGTACTATGTGAATGCTACTACGTGAACCG-TAAAACTTGATCACGTGTGTAGTACTATGTG
1 TGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTACTAAGTG
** * * *
38909485 AAGGCTACTACATGAACCGTAAAACTTT-ATCACGTG
66 AAGGCTACTATGTGTACCG-AAAGCTTTGGTCACGTG
* *
38909521 TGTAGTACTATGTGAAGGCTACTACATGTATCGA
1 TGTAGTACTATGTGAAGGCTACTACGTGAATCGA
38909555 ATGATAAAAG
Statistics
Matches: 205, Mismatches: 29, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
100 36 0.18
101 45 0.22
102 123 0.60
103 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (101 bp):
TGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTACTAAGTG
AAGGCTACTATGTGTACCGAAAGCTTTGGTCACGTG
Found at i:38909548 original size:50 final size:50
Alignment explanation
Indices: 38909217--38909545 Score: 293
Period size: 51 Copynumber: 6.5 Consensus size: 50
38909207 TGAACATTTA
* * ** *** * *
38909217 TGTAGTACTGTGTGAAGGCTACTACGTGTATCAATAAATGATGGTCACATG
1 TGTAGTACTATGTGAAGGCTACTACGTG-AACCGTAAAACTTGATCACGTG
* * * * * * *
38909268 TGTAGTACTAAGTGAAGGCTACAATGTGTACAG-AGAAGCTTTGGTCACGTG
1 TGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAAC-TTGATCACGTG
* * *** * * *
38909319 TGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATA
1 TGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACGTG
* * * * * *
38909370 TGTATTAGTAAGTGAAGGCTACTATGTGTACCG-AAAAGCTTTGGTCACGTG
1 TGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAA-C-TTGATCACGTG
*
38909421 TGTAGTACTATGTGAATGCTACTACGTGAACCGTAAAACTTGATCACGTG
1 TGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGATCACGTG
* *
38909471 TGTAGTACTATGTGAAGGCTACTACATGAACCGTAAAACTTTATCACGTG
1 TGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGATCACGTG
38909521 TGTAGTACTATGTGAAGGCTACTAC
1 TGTAGTACTATGTGAAGGCTACTAC
38909546 ATGTATCGAA
Statistics
Matches: 226, Mismatches: 45, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
49 4 0.02
50 86 0.38
51 129 0.57
52 6 0.03
53 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (50 bp):
TGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGATCACGTG
Found at i:38920043 original size:50 final size:51
Alignment explanation
Indices: 38919878--38920070 Score: 169
Period size: 51 Copynumber: 3.8 Consensus size: 51
38919868 TTCCTATAAA
* * * *
38919878 CACGTGTGTAGTACTA-AGTGCAGGCTACTACGGGTATCG-ATAGATAATGGT
1 CACGTGTGTAGTACTATA-TGCAGGCTACTACGTGTACCGAAAAGAT-TTGGT
* * * ** * * *
38919929 CACATGTGTAGTATTATGTGCAGGCTGTTATGTGTACC-AGAAGGCTTTGGT
1 CACGTGTGTAGTACTATATGCAGGCTACTACGTGTACCGA-AAAGATTTGGT
* * *
38919980 CACGTGCGTAGTACTATATGCAGGCTACTACGTGAACCGAAAAG-TTTGAT
1 CACGTGTGTAGTACTATATGCAGGCTACTACGTGTACCGAAAAGATTTGGT
* * *
38920030 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAA
1 CACGTGTGTAGTACTATATGCAGGCTACTACGTGTACCGAA
38920071 TGATAATAAT
Statistics
Matches: 111, Mismatches: 27, Indels: 9
0.76 0.18 0.06
Matches are distributed among these distances:
50 41 0.37
51 66 0.59
52 4 0.04
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (51 bp):
CACGTGTGTAGTACTATATGCAGGCTACTACGTGTACCGAAAAGATTTGGT
Found at i:38920336 original size:36 final size:36
Alignment explanation
Indices: 38920289--38920361 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
38920279 AACAGAACAG
38920289 ATTCAAACACTGGAGGTGATGTTAGTTTCAAAAATC
1 ATTCAAACACTGGAGGTGATGTTAGTTTCAAAAATC
38920325 ATTCAAACACTGGAGGTGATGTTAGTTTCAAAAATC
1 ATTCAAACACTGGAGGTGATGTTAGTTTCAAAAATC
38920361 A
1 A
38920362 CCAAAAATTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (36 bp):
ATTCAAACACTGGAGGTGATGTTAGTTTCAAAAATC
Found at i:38926234 original size:32 final size:31
Alignment explanation
Indices: 38926189--38926284 Score: 165
Period size: 31 Copynumber: 3.1 Consensus size: 31
38926179 CTTAGATAAT
*
38926189 TTTAAAGAGTTTTATTAGGATTCAATTATTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
38926220 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
*
38926252 TTGAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
38926283 TT
1 TT
38926285 GTAATTTGCC
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
31 33 0.53
32 29 0.47
ACGTcount: A:0.31, C:0.08, G:0.14, T:0.47
Consensus pattern (31 bp):
TTTAAAGAGTTTTATTAGGATTCAATTACTC
Found at i:38926906 original size:50 final size:51
Alignment explanation
Indices: 38926729--38926914 Score: 180
Period size: 51 Copynumber: 3.7 Consensus size: 51
38926719 TTCCTATAAA
* * * * * * * *
38926729 CACGTGTGTAGTACTAAGTGCAGGCTACTACGGGTATC-GATAGATAATGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCAGAAAGCT-TTGAT
* * * * *
38926780 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAAGGCTTTGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCAGAAAGCTTTGAT
* *
38926831 CACGTGCGTAGTACTATATGCAGGCTACTACGTGAACC-GAAAAG-TTTGAT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCAG-AAAGCTTTGAT
* *
38926881 CACGTGTGTAGTTCTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTG
38926915 TGTCAAATGA
Statistics
Matches: 113, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
50 36 0.32
51 73 0.65
52 4 0.04
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCAGAAAGCTTTGAT
Found at i:38940391 original size:3 final size:3
Alignment explanation
Indices: 38940383--38940433 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
38940373 TTCCTTTCAA
38940383 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
38940431 AAT
1 AAT
38940434 GTAAAGCATG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:38945516 original size:23 final size:22
Alignment explanation
Indices: 38945488--38946000 Score: 307
Period size: 23 Copynumber: 22.9 Consensus size: 22
38945478 AAGTAAAATT
*
38945488 ATTAACTTAGTTTAGGGTTTTAA
1 ATTAA-TTAGGTTAGGGTTTTAA
*
38945511 ATTAACTTAGTTTAGGGTTTTAA
1 ATTAA-TTAGGTTAGGGTTTTAA
* *
38945534 AGTTAA--GGGTAAGGGTTTTTAA
1 A-TTAATTAGGTTAGGG-TTTTAA
* *
38945556 GTTAA--GGGTTTAGGGTTTTTAA
1 ATTAATTAGG-TTAGGG-TTTTAA
* ***
38945578 GTTAAGGGGGTTAGGGTTTTAA
1 ATTAATTAGGTTAGGGTTTTAA
* * *
38945600 GTTAA--GGGTTAGGGTTTTTA
1 ATTAATTAGGTTAGGGTTTTAA
* **
38945620 AGTAACGA-GTTAGGGTTTTTAA
1 ATTAATTAGGTTAGGG-TTTTAA
* *
38945642 TTTAATTAGGTTAGGGTTTTAGG
1 ATTAATTAGGTTAGGGTTTTA-A
* *
38945665 GTTAA--GGGTTAGGGTTCTT-A
1 ATTAATTAGGTTAGGGTT-TTAA
38945685 ATTAATTTAGGTTAGGGTTTTTAA
1 ATTAA-TTAGGTTAGGG-TTTTAA
* * *
38945709 TTTAATTAGCTTAGGGTTTTAGG
1 ATTAATTAGGTTAGGGTTTTA-A
* * *
38945732 GTTAA--GGGTTAGGGTTTTTA
1 ATTAATTAGGTTAGGGTTTTAA
38945752 ATTAAATTAGGTTAGGGATTTTAA
1 ATT-AATTAGGTTAGGG-TTTTAA
*
38945776 TTTAATTAGGTTAGGGTTTTTAA
1 ATTAATTAGGTTAGGG-TTTTAA
* *
38945799 TTTAATTAGGTTAGGGTTTTTA
1 ATTAATTAGGTTAGGGTTTTAA
* *
38945821 ATTAAATTAGGTTAAGGTTTTTTTA
1 ATT-AATTAGGTT-AGG-GTTTTAA
* * *
38945846 TTTAATTAGGTTAGAGTTTTAG
1 ATTAATTAGGTTAGGGTTTTAA
** * *
38945868 GGT-ATTAGGTT-GGATTTTTA
1 ATTAATTAGGTTAGGGTTTTAA
38945888 ATTAAATTAGGTTAGGGTTTTTAA
1 ATT-AATTAGGTTAGGG-TTTTAA
* *** *
38945912 TTTAATTAGGTTTTAGTTTTTA
1 ATTAATTAGGTTAGGGTTTTAA
38945934 ATTAAATTAGGTTAGGGTTTTTAA
1 ATT-AATTAGGTTAGGG-TTTTAA
* * *
38945958 TTTAATTAGGTTAGAGTTTTTA
1 ATTAATTAGGTTAGGGTTTTAA
38945980 ATTAAATTAGGTTAGGGTTTT
1 ATT-AATTAGGTTAGGGTTTT
38946001 TAAGTTAAGA
Statistics
Matches: 393, Mismatches: 66, Indels: 62
0.75 0.13 0.12
Matches are distributed among these distances:
20 29 0.07
21 51 0.13
22 89 0.23
23 169 0.43
24 47 0.12
25 8 0.02
ACGTcount: A:0.27, C:0.01, G:0.25, T:0.47
Consensus pattern (22 bp):
ATTAATTAGGTTAGGGTTTTAA
Found at i:38945576 original size:44 final size:42
Alignment explanation
Indices: 38945522--38945825 Score: 174
Period size: 44 Copynumber: 6.9 Consensus size: 42
38945512 TTAACTTAGT
*
38945522 TTAGGGTTTTAAAGTTAA-GGGTAAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTT-AAGTTAAGGGGTTAGGGTTTTTAAGTTAAGGG
38945564 TTTAGGGTTTTTAAGTTAAGGGGGTTAGGG-TTTTAAGTTAAGGG
1 -TTAGGG-TTTTAAGTTAA-GGGGTTAGGGTTTTTAAGTTAAGGG
* * * *
38945608 TTAGGGTTTTTAAG-TAACGAGTTAGGGTTTTTAATTTAATTAGG
1 TTAGGG-TTTTAAGTTAAGGGGTTAGGGTTTTTAAGTTAA--GGG
* * *
38945652 TTAGGGTTTTAGGGTTAA-GGGTTAGGGTTCTTAA-TTAATTTAGG
1 TTAGGGTTTTA-AGTTAAGGGGTTAGGGTTTTTAAGTTAA---GGG
* ** * *
38945696 TTAGGGTTTTTAATTTAATTAGCTTAGGG-TTTTAGGGTTAAGGG
1 TTAGGG-TTTTAAGTTAA-GGGGTTAGGGTTTTTA-AGTTAAGGG
** * * *
38945740 TTAGGGTTTTTAA-TTAAATTAGGTTAGGGATTTTAATTTAATTAGG
1 TTAGGG-TTTTAAGTT-AA-GGGGTTAGGGTTTTTAAGTTAA--GGG
* **
38945786 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAA-TTAA
1 TTAGGG-TTTTAAGTTAA-GGGGTTAGGGTTTTTAAGTTAA
38945826 ATTAGGTTAA
Statistics
Matches: 222, Mismatches: 20, Indels: 36
0.80 0.07 0.13
Matches are distributed among these distances:
41 8 0.04
42 13 0.06
43 38 0.17
44 87 0.39
45 29 0.13
46 41 0.18
47 6 0.03
ACGTcount: A:0.26, C:0.01, G:0.28, T:0.45
Consensus pattern (42 bp):
TTAGGGTTTTAAGTTAAGGGGTTAGGGTTTTTAAGTTAAGGG
Found at i:38945710 original size:67 final size:65
Alignment explanation
Indices: 38945488--38946009 Score: 511
Period size: 67 Copynumber: 7.8 Consensus size: 65
38945478 AAGTAAAATT
* * * *
38945488 ATTAACTTAGTTTAGGG-TTTTAAATTAACTTAGTTTAGGGTTTTAAAGTTAAGGGTAAGGGTTT
1 ATTAA-TTAGGTTAGGGTTTTTAATTTAA-TTAGGTTAGGGTTTT-AAGTTAAGGGTTAGGGTTT
38945552 TTA
63 TTA
* * ***
38945555 AGTTAA--GGGTTTAGGGTTTTTAAGTTAAGGGGGTTAGGGTTTTAAGTTAAGGGTTAGGGTTTT
1 A-TTAATTAGG-TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTAAGTTAAGGGTTAGGGTTTT
38945618 TA
64 TA
* ** * *
38945620 AGTAACGA-GTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTAGGGTTAAGGGTTAGGGTTCTT
1 ATTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTA-AGTTAAGGGTTAGGGTTTTT
38945684 A
65 A
* *
38945685 ATTAATTTAGGTTAGGGTTTTTAATTTAATTAGCTTAGGGTTTTAGGGTTAAGGGTTAGGGTTTT
1 ATTAA-TTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTA-AGTTAAGGGTTAGGGTTTT
38945750 TA
64 TA
* * *
38945752 ATTAAATTAGGTTAGGGATTTTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTT
1 ATT-AATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGG-TTTTAAGTTAA--GGGTTAGGGTT
38945817 TTTA
62 TTTA
* * * * * *
38945821 ATTAAATTAGGTTAAGGTTTTTTTATTTAATTAGGTTAGAGTTTTAGGGTATTA-GGTT-GGATT
1 ATT-AATTAGGTT-AGGGTTTTTAATTTAATTAGGTTAGGGTTTTA-AGT-TAAGGGTTAGGGTT
38945884 TTTA
62 TTTA
* *
38945888 ATTAAATTAGGTTAGGGTTTTTAATTTAATTAGGTTTTA-GTTTTTAA-TTAAATTAGGTTAGGG
1 ATT-AATTAGGTTAGGGTTTTTAATTTAATTAGG--TTAGGGTTTTAAGTT-AA--GGGTTAGGG
38945951 TTTTTA
60 TTTTTA
* *
38945957 ATTTAATTAGGTTAGAGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTAAG
1 A-TTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGG-TTTTAAGTTAAG
38946010 AGTATTAATG
Statistics
Matches: 384, Mismatches: 45, Indels: 52
0.80 0.09 0.11
Matches are distributed among these distances:
64 34 0.09
65 49 0.13
66 37 0.10
67 134 0.35
68 23 0.06
69 77 0.20
70 28 0.07
71 2 0.01
ACGTcount: A:0.27, C:0.01, G:0.25, T:0.47
Consensus pattern (65 bp):
ATTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTAAGTTAAGGGTTAGGGTTTTTA
Done.