Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 147 of 226
Found at i:46085151 original size:12 final size:13
Alignment explanation
Indices: 46085134--46085162 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
46085124 CTCATACATG
46085134 AATAAATAAA-GC
1 AATAAATAAATGC
46085146 AATAAATAAATGC
1 AATAAATAAATGC
46085159 AATA
1 AATA
46085163 GTTATAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:46089168 original size:20 final size:20
Alignment explanation
Indices: 46089143--46089183 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
46089133 AGCAAAGATT
46089143 GGTCATCCAAATTGGATGAA
1 GGTCATCCAAATTGGATGAA
46089163 GGTCATCCAAATTGGATGAA
1 GGTCATCCAAATTGGATGAA
46089183 G
1 G
46089184 CTTTATGGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.15, G:0.27, T:0.24
Consensus pattern (20 bp):
GGTCATCCAAATTGGATGAA
Found at i:46109174 original size:21 final size:21
Alignment explanation
Indices: 46109148--46109204 Score: 80
Period size: 21 Copynumber: 2.7 Consensus size: 21
46109138 AGTTACAGAA
*
46109148 TTCTACCGATAGAA-TTGGGAG
1 TTCTACCGATACAACTTGGG-G
*
46109169 TTCTACCGATACAACTTTGGG
1 TTCTACCGATACAACTTGGGG
46109190 TTCTACCGATACAAC
1 TTCTACCGATACAAC
46109205 CCAGACTTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 29 0.88
22 4 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (21 bp):
TTCTACCGATACAACTTGGGG
Found at i:46132367 original size:19 final size:17
Alignment explanation
Indices: 46132332--46132367 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 17
46132322 ATTTTTCTTC
46132332 CAAAAATACTTTTCAAA
1 CAAAAATACTTTTCAAA
46132349 CAAAAAGTACTTCTTCAAA
1 CAAAAA-TACTT-TTCAAA
46132368 GCAATGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 5 0.29
19 6 0.35
ACGTcount: A:0.50, C:0.19, G:0.03, T:0.28
Consensus pattern (17 bp):
CAAAAATACTTTTCAAA
Found at i:46133938 original size:35 final size:35
Alignment explanation
Indices: 46133892--46133962 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
46133882 ACACTGTACC
*
46133892 AAATATAAATTAAAAAATTAATTAGTATAAATTTT
1 AAATATAAATTAAAAAAATAATTAGTATAAATTTT
46133927 AAATATAAATTAAAAAAATAATTAGTATAAATTTT
1 AAATATAAATTAAAAAAATAATTAGTATAAATTTT
46133962 A
1 A
46133963 TTTGTAATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (35 bp):
AAATATAAATTAAAAAAATAATTAGTATAAATTTT
Found at i:46134053 original size:3 final size:3
Alignment explanation
Indices: 46134047--46134077 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
46134037 AGTTATAAGA
46134047 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
46134078 CCTAGAGGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:46134679 original size:124 final size:124
Alignment explanation
Indices: 46134459--46134834 Score: 560
Period size: 124 Copynumber: 3.0 Consensus size: 124
46134449 TTAGGGTTTT
* *
46134459 TAGGTCTTGGAAGAAATAATTTCGAGTTGATGTTTCTGAGTAAATAGTATAAAATCGCTTTTAGC
1 TAGGTCAT-GAAGAAATAATTTCGAGTTGATGTTTCTGAGCAAATAGTATAAAATCGCTTTTAGC
* *
46134524 AGGATGCTATTTGAGAAGAATTTGTGAAATCGCGGCCTCGT-GACGCGCTTTTGCTACAG
65 AAGATGCTATTTGAGAAGAATTTATGAAATCGCGGCCTCGTGGACGCGCTTTTGCTACAG
* *
46134583 TAGGTCCTAGAAGAAATAATTTCGAGTTGATGTTTCTGAGCAAATAGTATAAAATCACTTTTAGC
1 TAGGTCAT-GAAGAAATAATTTCGAGTTGATGTTTCTGAGCAAATAGTATAAAATCGCTTTTAGC
*
46134648 AAGATGCTATTTGAGAAGAATTTCTGAAATCGCGGCCTCGTGGACGCGCTTTTGCTACAG
65 AAGATGCTATTTGAGAAGAATTTATGAAATCGCGGCCTCGTGGACGCGCTTTTGCTACAG
*** * * *
46134708 TAGGTCATGTAAGAAATAATTT-TTTTTTACT-TTTCTGACCAAATAGTATAAAATCGCTTCTAG
1 TAGGTCATG-AAGAAATAATTTCGAGTTGA-TGTTTCTGAGCAAATAGTATAAAATCGCTTTTAG
* *
46134771 CATGATGCTATTTGAGAAGAATTTATGAAATCGCGGCCTCGTGGGCGCGCTTTTGCTACAG
64 CAAGATGCTATTTGAGAAGAATTTATGAAATCGCGGCCTCGTGGACGCGCTTTTGCTACAG
46134832 TAG
1 TAG
46134835 CATGTTTGGG
Statistics
Matches: 232, Mismatches: 17, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
124 194 0.84
125 38 0.16
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (124 bp):
TAGGTCATGAAGAAATAATTTCGAGTTGATGTTTCTGAGCAAATAGTATAAAATCGCTTTTAGCA
AGATGCTATTTGAGAAGAATTTATGAAATCGCGGCCTCGTGGACGCGCTTTTGCTACAG
Found at i:46136371 original size:104 final size:103
Alignment explanation
Indices: 46136204--46136409 Score: 351
Period size: 104 Copynumber: 2.0 Consensus size: 103
46136194 GGTTGCTGTG
* *
46136204 TGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTTTGAAATGTGAAAG
1 TGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTTTGAAATGTGAAAG
46136269 GGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAA
66 GGGGTTGCTATGTGCTGATT-CCCCGAGGGGTTGCTAAA
* *
46136308 TGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCTTTGAAATGTGAAA
1 TGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCTTTGAAATGTGAAA
46136372 GGGGGTTGCTATGTGCTGATTCCCCGAGGGGTTGCTAA
65 GGGGGTTGCTATGTGCTGATTCCCCGAGGGGTTGCTAA
46136410 GTGCGATATC
Statistics
Matches: 97, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
103 17 0.18
104 79 0.81
105 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.32
Consensus pattern (103 bp):
TGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTTTGAAATGTGAAAG
GGGGTTGCTATGTGCTGATTCCCCGAGGGGTTGCTAAA
Found at i:46136465 original size:70 final size:71
Alignment explanation
Indices: 46136333--46136482 Score: 248
Period size: 70 Copynumber: 2.1 Consensus size: 71
46136323 TCATTGGTGG
* *
46136333 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
46136398 AGGGGT
66 AGGGGT
***
46136404 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
46136468 AGGGGT
66 AGGGGT
46136474 TGCTAAGTG
1 TGCTAAGTG
46136483 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
70 44 0.59
71 30 0.41
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (71 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
AGGGGT
Found at i:46136478 original size:26 final size:26
Alignment explanation
Indices: 46136443--46136492 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
46136433 AAATGAAAAG
* *
46136443 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
46136469 GGGGTTGCTAAGTGATGATTCCCC
1 GGGGTTGCTAAGTGATGATTCCCC
46136493 AATTCAGTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.14, C:0.22, G:0.34, T:0.30
Consensus pattern (26 bp):
GGGGTTGCTAAGTGATGATTCCCCGA
Found at i:46140665 original size:37 final size:37
Alignment explanation
Indices: 46140624--46140923 Score: 537
Period size: 37 Copynumber: 8.1 Consensus size: 37
46140614 TTGTATTAAC
* *
46140624 TCAAATTATATAAAATTACTAATGGTTAGTAAAATTA
1 TCAAATTATATAAAATTATTAATGGTTAGTGAAATTA
46140661 TCAAATTATATAAAATTATTAATGGTTAGTGAAATTA
1 TCAAATTATATAAAATTATTAATGGTTAGTGAAATTA
46140698 TCAAATTATATAAAATTATTAATGGTTAGTGAAATTA
1 TCAAATTATATAAAATTATTAATGGTTAGTGAAATTA
*
46140735 TCAAATTATATAAAATTATTACTGGTTAGTGAAATTA
1 TCAAATTATATAAAATTATTAATGGTTAGTGAAATTA
*
46140772 TGAAATTATATAAAATTATTAATGGTTAGTGAAATTA
1 TCAAATTATATAAAATTATTAATGGTTAGTGAAATTA
* *
46140809 TCAAATTATATAAAATTATTAATGGTTACTAAAATTA
1 TCAAATTATATAAAATTATTAATGGTTAGTGAAATTA
46140846 TCAAATTATATAAAATTATTAATGGTTAGTGAAATTA
1 TCAAATTATATAAAATTATTAATGGTTAGTGAAATTA
*
46140883 TGAAATTATATAAAATTATTAATGGTTAGTGAAATTA
1 TCAAATTATATAAAATTATTAATGGTTAGTGAAATTA
46140920 TCAA
1 TCAA
46140924 TTGAGTTAGG
Statistics
Matches: 251, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 251 1.00
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.40
Consensus pattern (37 bp):
TCAAATTATATAAAATTATTAATGGTTAGTGAAATTA
Found at i:46140975 original size:29 final size:29
Alignment explanation
Indices: 46140922--46141602 Score: 941
Period size: 29 Copynumber: 22.8 Consensus size: 29
46140912 TGAAATTATC
*
46140922 AATTGAGTTAGGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTA-GGTTAGGGTTAGGGTTTTT
*
46140952 AATTAAGTTTGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
*
46140981 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGG-TTAGGGTTTTT
46141011 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
* *
46141040 AATTAAATTAGGTTAAGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
46141069 AATTACA-TTAGGTTAGGGTTAGGGTTTTT
1 AATTA-AGTTAGGTTAGGGTTAGGGTTTTT
* *
46141098 AATTAAGTTTGATTAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
*
46141127 AATTAAGTTTGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
46141156 AATTAAGTTAGGTTAGGGTTAGGGTTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGG-TTTTT
*
46141186 AATTAAGTTTGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
*
46141215 AATTAAATTAGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
*
46141244 AATTAAGTTTGGTTAGGGTTAGGGAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTT----AGGGTTTTT
* * *
46141277 AATTAAGTTTGGTTAGGGGTGGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
* *
46141306 AATTAAATTAGGTTAGGGTTTAAGGTTTTT
1 AATTAAGTTAGGTTAGGG-TTAGGGTTTTT
46141336 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
46141365 AATTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTTT
1 AATT-A---A-GTTA-GGTTAGGGTTAGGGTTTTT
* * *
46141400 AATTGAGTTTGGTTAGGGTTAGCGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
* * *
46141429 AATAAAGTTTGGTTAGAGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
*
46141458 AATTGAGTTAGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
46141487 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
*
46141516 AATTAAATTAGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
46141545 AATTAAATTAGGTTAGGGTTAGGGTTAGGGTTTTT
1 AATT--A--A-GTTA-GGTTAGGGTTAGGGTTTTT
*
46141580 AATTAAGTTTGGTTAGGGTTAGG
1 AATTAAGTTAGGTTAGGGTTAGG
46141603 AATAAACTTC
Statistics
Matches: 589, Mismatches: 41, Indels: 43
0.88 0.06 0.06
Matches are distributed among these distances:
28 1 0.00
29 404 0.69
30 97 0.16
31 3 0.01
33 31 0.05
34 7 0.01
35 46 0.08
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.45
Consensus pattern (29 bp):
AATTAAGTTAGGTTAGGGTTAGGGTTTTT
Found at i:46142810 original size:7 final size:7
Alignment explanation
Indices: 46142798--46142823 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
46142788 TATACATAAT
46142798 AATACTA
1 AATACTA
46142805 AATACTA
1 AATACTA
46142812 AATACTA
1 AATACTA
46142819 AATAC
1 AATAC
46142824 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:46144045 original size:22 final size:22
Alignment explanation
Indices: 46143995--46144052 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
46143985 TCAAATATGG
* *
46143995 AATTGAAAGAATTTTGGAAGGA
1 AATTGAGAGAATTTTGGAAAGA
46144017 AATTGAGAGAATTTTGGAAAGA
1 AATTGAGAGAATTTTGGAAAGA
46144039 AATTGAGAGGAATT
1 AATTGAGA-GAATT
46144053 GAGAGGAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
22 28 0.85
23 5 0.15
ACGTcount: A:0.45, C:0.00, G:0.28, T:0.28
Consensus pattern (22 bp):
AATTGAGAGAATTTTGGAAAGA
Found at i:46144069 original size:12 final size:11
Alignment explanation
Indices: 46144037--46144069 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
46144027 ATTTTGGAAA
46144037 GAAATTGAGAG
1 GAAATTGAGAG
46144048 G-AATTGAGAG
1 GAAATTGAGAG
46144058 GAAATATGAGAG
1 GAAAT-TGAGAG
46144070 AGGATTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 10 0.50
11 4 0.20
12 6 0.30
ACGTcount: A:0.45, C:0.00, G:0.36, T:0.18
Consensus pattern (11 bp):
GAAATTGAGAG
Found at i:46144474 original size:13 final size:13
Alignment explanation
Indices: 46144456--46144484 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
46144446 TACAAATTTA
46144456 TAATTTACTGAAT
1 TAATTTACTGAAT
46144469 TAATTTACTGAAT
1 TAATTTACTGAAT
46144482 TAA
1 TAA
46144485 ATTAAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (13 bp):
TAATTTACTGAAT
Found at i:46148533 original size:13 final size:13
Alignment explanation
Indices: 46148517--46148544 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
46148507 TAAAAAGATT
46148517 TTCAAAAAAATAA
1 TTCAAAAAAATAA
46148530 TTCAAAAAAATAA
1 TTCAAAAAAATAA
46148543 TT
1 TT
46148545 AAGTCCCCGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (13 bp):
TTCAAAAAAATAA
Found at i:46148688 original size:20 final size:21
Alignment explanation
Indices: 46148663--46148719 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 21
46148653 AATAAAAGTT
*
46148663 ATAAAAATAATT-ATATTTTA
1 ATAAAAATAATTAAAATTTTA
*
46148683 ATAAAAAAAATTAAAATTTTA
1 ATAAAAATAATTAAAATTTTA
* *
46148704 TTAAAAATTA-TAAAAT
1 ATAAAAATAATTAAAAT
46148720 ATATAGAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 17 0.55
21 14 0.45
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
ATAAAAATAATTAAAATTTTA
Found at i:46148701 original size:21 final size:20
Alignment explanation
Indices: 46148663--46148710 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
46148653 AATAAAAGTT
* *
46148663 ATAAAAATAATTATATTTTA
1 ATAAAAAAAATTAAATTTTA
46148683 ATAAAAAAAATTAAAATTTTA
1 ATAAAAAAAATT-AAATTTTA
*
46148704 TTAAAAA
1 ATAAAAA
46148711 TTATAAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
ATAAAAAAAATTAAATTTTA
Found at i:46148952 original size:9 final size:9
Alignment explanation
Indices: 46148940--46149085 Score: 92
Period size: 9 Copynumber: 16.4 Consensus size: 9
46148930 ATTTGATGCA
46148940 TTTTATAATT
1 TTTTATAA-T
*
46148950 TTTTATGAT
1 TTTTATAAT
*
46148959 TTTTTTAAAT
1 TTTTAT-AAT
46148969 TTTTA-AAT
1 TTTTATAAT
46148977 TTTTA-AAT
1 TTTTATAAT
46148985 TTTTATAAT
1 TTTTATAAT
*
46148994 TCTTT-TACT
1 T-TTTATAAT
46149003 TTTT-T-AT
1 TTTTATAAT
46149010 TTTTATAAT
1 TTTTATAAT
46149019 TTTTA-ATAT
1 TTTTATA-AT
* *
46149028 TTTAATATT
1 TTTTATAAT
*
46149037 TTTTATTAAAA
1 TTTTA-T-AAT
** *
46149048 TTCAATAAC
1 TTTTATAAT
*
46149057 TTTTATAAC
1 TTTTATAAT
46149066 TTTTAT--T
1 TTTTATAAT
46149073 TTTTATAAT
1 TTTTATAAT
46149082 TTTT
1 TTTT
46149086 TTTGCCACAT
Statistics
Matches: 108, Mismatches: 17, Indels: 23
0.73 0.11 0.16
Matches are distributed among these distances:
7 11 0.10
8 22 0.20
9 52 0.48
10 19 0.18
11 4 0.04
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (9 bp):
TTTTATAAT
Found at i:46148971 original size:8 final size:8
Alignment explanation
Indices: 46148960--46149039 Score: 74
Period size: 8 Copynumber: 9.6 Consensus size: 8
46148950 TTTTATGATT
46148960 TTTTTAAA
1 TTTTTAAA
46148968 TTTTTAAA
1 TTTTTAAA
46148976 TTTTTAAA
1 TTTTTAAA
46148984 TTTTTATAA
1 TTTTTA-AA
* *
46148993 TTCTTTTAC
1 TT-TTTAAA
*
46149002 TTTTT-TA
1 TTTTTAAA
46149009 TTTTTATAA
1 TTTTTA-AA
46149018 TTTTT-AA
1 TTTTTAAA
46149025 TATTTTAATA
1 T-TTTTAA-A
46149035 TTTTT
1 TTTTT
46149040 TATTAAAATT
Statistics
Matches: 60, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
7 8 0.13
8 29 0.48
9 18 0.30
10 5 0.08
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.69
Consensus pattern (8 bp):
TTTTTAAA
Found at i:46148994 original size:25 final size:25
Alignment explanation
Indices: 46148939--46149041 Score: 70
Period size: 25 Copynumber: 4.0 Consensus size: 25
46148929 CATTTGATGC
* *
46148939 ATTTTATAATTTTTTATGATTTTTTTAA
1 ATTTT-TAAATTTTTAT-AATTTTTT-A
46148967 ATTTTTAAATTTTTA-AATTTTTATA
1 ATTTTTAAATTTTTATAATTTTT-TA
* *
46148992 ATTCTTTTACTTTTT-T-ATTTTTATA
1 ATT-TTTAAATTTTTATAATTTTT-TA
*
46149017 ATTTTTAATATTTTAAT-ATTTTTTA
1 ATTTTTAA-ATTTTTATAATTTTTTA
46149042 TTAAAATTCA
Statistics
Matches: 63, Mismatches: 7, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
24 4 0.06
25 28 0.44
26 17 0.27
27 9 0.14
28 5 0.08
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (25 bp):
ATTTTTAAATTTTTATAATTTTTTA
Found at i:46149346 original size:84 final size:83
Alignment explanation
Indices: 46149191--46149348 Score: 185
Period size: 84 Copynumber: 1.9 Consensus size: 83
46149181 GGTCAAATAA
* * *
46149191 CCTTTTTGATGCATTTGATAGTTTAAGTACCCAATTGAGTGTAAAAAAAAAAGGACTTAATTATT
1 CCTTTTTGATGAATTTGAAAGTTCAAGTACCCAATTGAGTGTAAAAAAAAAAGGACTTAATTATT
**
46149256 TTTTTTTAATTTTGAGAG
66 CATTTTTAATTTTGAGAG
* * * * *
46149274 CCTTTTTGATGAATTTTGAAAGTTCAAGTACCTAATTTAGTG-AAAAAATACAGGGGCTTAATT-
1 CCTTTTTGATGAA-TTTGAAAGTTCAAGTACCCAATTGAGTGTAAAAAA-AAAAGGACTTAATTA
46149337 TTCCATTTTTAA
64 TT-CATTTTTAA
46149349 ATTCAATACT
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
83 20 0.32
84 42 0.68
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (83 bp):
CCTTTTTGATGAATTTGAAAGTTCAAGTACCCAATTGAGTGTAAAAAAAAAAGGACTTAATTATT
CATTTTTAATTTTGAGAG
Found at i:46150568 original size:18 final size:19
Alignment explanation
Indices: 46150545--46150588 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
46150535 AAGAGTTGTG
46150545 ATAATTATAA-TTACAAGT
1 ATAATTATAATTTACAAGT
*
46150563 ATAATT-TAATTTACAATT
1 ATAATTATAATTTACAAGT
46150581 ATTAATTA
1 A-TAATTA
46150589 AAATAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 3 0.14
18 14 0.64
19 5 0.23
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (19 bp):
ATAATTATAATTTACAAGT
Found at i:46161431 original size:30 final size:29
Alignment explanation
Indices: 46161390--46161502 Score: 145
Period size: 30 Copynumber: 3.8 Consensus size: 29
46161380 ATTTTACATC
*
46161390 CTATTATAATGTTAGCTTGTGTGAGCAAT
1 CTATTATAATGTCAGCTTGTGTGAGCAAT
* *
46161419 CTTATTGTAATGTCAGCTTGTGTGAGCAAAA
1 C-TATTATAATGTCAGCTTGTGTGAGC-AAT
* *
46161450 CTATTATAATGTCAGCTTATGTGAGAAAT
1 CTATTATAATGTCAGCTTGTGTGAGCAAT
*
46161479 CCTATTATAATGTCAGCCTGTGTG
1 -CTATTATAATGTCAGCTTGTGTG
46161503 TTCGAGTTCG
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
29 3 0.04
30 66 0.92
31 3 0.04
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.38
Consensus pattern (29 bp):
CTATTATAATGTCAGCTTGTGTGAGCAAT
Found at i:46161490 original size:60 final size:60
Alignment explanation
Indices: 46161390--46161502 Score: 172
Period size: 60 Copynumber: 1.9 Consensus size: 60
46161380 ATTTTACATC
* * * * * *
46161390 CTATTATAATGTTAGCTTGTGTGAGCAATCTTATTGTAATGTCAGCTTGTGTGAGCAAAA
1 CTATTATAATGTCAGCTTATGTGAGAAATCCTATTATAATGTCAGCCTGTGTGAGCAAAA
46161450 CTATTATAATGTCAGCTTATGTGAGAAATCCTATTATAATGTCAGCCTGTGTG
1 CTATTATAATGTCAGCTTATGTGAGAAATCCTATTATAATGTCAGCCTGTGTG
46161503 TTCGAGTTCG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 47 1.00
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.38
Consensus pattern (60 bp):
CTATTATAATGTCAGCTTATGTGAGAAATCCTATTATAATGTCAGCCTGTGTGAGCAAAA
Found at i:46162821 original size:18 final size:18
Alignment explanation
Indices: 46162809--46162847 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
46162799 TTTTTTTCAT
*
46162809 TTTTCAAAATTTTCAAAA
1 TTTTCAAAATTTTTAAAA
46162827 TTTTCAAAATTTTTATAAA
1 TTTTCAAAATTTTTA-AAA
46162846 TT
1 TT
46162848 CTATTTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTTCAAAATTTTTAAAA
Found at i:46162847 original size:10 final size:9
Alignment explanation
Indices: 46162809--46162839 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
46162799 TTTTTTTCAT
46162809 TTTTCAAAA
1 TTTTCAAAA
46162818 TTTTCAAAA
1 TTTTCAAAA
46162827 TTTTCAAAA
1 TTTTCAAAA
46162836 TTTT
1 TTTT
46162840 TATAAATTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.52
Consensus pattern (9 bp):
TTTTCAAAA
Found at i:46163479 original size:17 final size:17
Alignment explanation
Indices: 46163440--46163486 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
46163430 TTTTTATTTT
*
46163440 TTTAAAAAT-AAAATTA
1 TTTAAAAATAAAAACTA
**
46163456 TGGAAAAATAAAAACTA
1 TTTAAAAATAAAAACTA
*
46163473 TTTAAAATTAAAAA
1 TTTAAAAATAAAAA
46163487 ATAAAAAAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
16 7 0.29
17 17 0.71
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (17 bp):
TTTAAAAATAAAAACTA
Found at i:46163510 original size:20 final size:20
Alignment explanation
Indices: 46163476--46163526 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
46163466 AAAACTATTT
46163476 AAAA-TTAAAAA-ATAAA-A
1 AAAATTTAAAAATATAAACA
46163493 AAATATTTAAAAATATAAACA
1 AAA-ATTTAAAAATATAAACA
*
46163514 AAAATTTCAAAAT
1 AAAATTTAAAAAT
46163527 TCAATATTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 3 0.10
18 1 0.03
19 7 0.24
20 14 0.48
21 4 0.14
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (20 bp):
AAAATTTAAAAATATAAACA
Found at i:46163517 original size:25 final size:25
Alignment explanation
Indices: 46163459--46163507 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
46163449 AAAATTATGG
* *
46163459 AAAAAT-AAAAACTATTTAAAATTA
1 AAAAATAAAAAAATATTTAAAAATA
46163483 AAAAATAAAAAAATATTTAAAAATA
1 AAAAATAAAAAAATATTTAAAAATA
46163508 TAAACAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (25 bp):
AAAAATAAAAAAATATTTAAAAATA
Found at i:46163965 original size:15 final size:16
Alignment explanation
Indices: 46163942--46163978 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
46163932 TTTTTTCTAA
46163942 TTAAAAAAATTATTTT
1 TTAAAAAAATTATTTT
46163958 TTAAAAAAATTATTTT
1 TTAAAAAAATTATTTT
46163974 TTAAA
1 TTAAA
46163979 TGAAAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TTAAAAAAATTATTTT
Found at i:46166292 original size:22 final size:22
Alignment explanation
Indices: 46166257--46166298 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
46166247 CCTTATTAAG
*
46166257 CACCACACGTGTTTTTAGTGGT
1 CACCACACGCGTTTTTAGTGGT
*
46166279 CACCACCCGCGTTTTTAGTG
1 CACCACACGCGTTTTTAGTG
46166299 TCGCTACTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.17, C:0.29, G:0.21, T:0.33
Consensus pattern (22 bp):
CACCACACGCGTTTTTAGTGGT
Found at i:46167342 original size:22 final size:22
Alignment explanation
Indices: 46167317--46167685 Score: 205
Period size: 22 Copynumber: 16.4 Consensus size: 22
46167307 GCTAAAAAAT
46167317 GAACAACATTTAACCAACATTC
1 GAACAACATTTAACCAACATTC
* *
46167339 GAACAAAATTTAACCGACATTC
1 GAACAACATTTAACCAACATTC
* *
46167361 GGACAACATTTAAACAACATTC
1 GAACAACATTTAACCAACATTC
* * * *
46167383 -AGACAACATTAGTATGCTAAAAAAT-
1 GA-ACAACATT--TA-AC-CAACATTC
*
46167408 GAACAGCATTTAACCAACATTC
1 GAACAACATTTAACCAACATTC
*
46167430 -AGACAGCATTTAACCAACATTC
1 GA-ACAACATTTAACCAACATTC
*
46167452 -AGACAACATTTAAACAACATTC
1 GA-ACAACATTTAACCAACATTC
* * * * * *
46167474 GGACAGCATTAGTATGCTAAAAAAT-
1 GAACAACATT--TA-AC-CAACATTC
*
46167499 GAACAGCATTTAACCAACATTC
1 GAACAACATTTAACCAACATTC
*
46167521 -AGACAGCATTTAACCAACATTC
1 GA-ACAACATTTAACCAACATTC
*
46167543 -AGACAACATTTAAACAACATTC
1 GA-ACAACATTTAACCAACATTC
* *
46167565 GGACAACATTTAAACAACATTC
1 GAACAACATTTAACCAACATTC
* * * * *
46167587 GGACAACATTAGTATGCTAAAAAATC
1 GAACAACATT--TA-AC-CAACATTC
*
46167613 -AACAACAATTAACCAACATTC
1 GAACAACATTTAACCAACATTC
* * * *
46167634 GGATAGCATTTGACCAACATTC
1 GAACAACATTTAACCAACATTC
* * *
46167656 GGACAACATTTAAACAACATTT
1 GAACAACATTTAACCAACATTC
*
46167678 GGACAACA
1 GAACAACA
46167686 CCTTGTCATC
Statistics
Matches: 271, Mismatches: 55, Indels: 42
0.74 0.15 0.11
Matches are distributed among these distances:
21 15 0.06
22 207 0.76
23 6 0.02
24 6 0.02
25 23 0.08
26 14 0.05
ACGTcount: A:0.45, C:0.22, G:0.10, T:0.23
Consensus pattern (22 bp):
GAACAACATTTAACCAACATTC
Found at i:46167405 original size:91 final size:91
Alignment explanation
Indices: 46167298--46167574 Score: 466
Period size: 91 Copynumber: 3.0 Consensus size: 91
46167288 ATTTGGATAG
* * ** * *
46167298 CATTAATATGCTAAAAAATGAACAACATTTAACCAACATTC-GAACAAAATTTAACCGACATTCG
1 CATTAGTATGCTAAAAAATGAACAGCATTTAACCAACATTCAG-ACAGCATTTAACCAACATTCA
*
46167362 GACAACATTTAAACAACATTCAGACAA
65 GACAACATTTAAACAACATTCGGACAA
46167389 CATTAGTATGCTAAAAAATGAACAGCATTTAACCAACATTCAGACAGCATTTAACCAACATTCAG
1 CATTAGTATGCTAAAAAATGAACAGCATTTAACCAACATTCAGACAGCATTTAACCAACATTCAG
*
46167454 ACAACATTTAAACAACATTCGGACAG
66 ACAACATTTAAACAACATTCGGACAA
46167480 CATTAGTATGCTAAAAAATGAACAGCATTTAACCAACATTCAGACAGCATTTAACCAACATTCAG
1 CATTAGTATGCTAAAAAATGAACAGCATTTAACCAACATTCAGACAGCATTTAACCAACATTCAG
46167545 ACAACATTTAAACAACATTCGGACAA
66 ACAACATTTAAACAACATTCGGACAA
46167571 CATT
1 CATT
46167575 TAAACAACAT
Statistics
Matches: 176, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
91 175 0.99
92 1 0.01
ACGTcount: A:0.45, C:0.22, G:0.09, T:0.23
Consensus pattern (91 bp):
CATTAGTATGCTAAAAAATGAACAGCATTTAACCAACATTCAGACAGCATTTAACCAACATTCAG
ACAACATTTAAACAACATTCGGACAA
Found at i:46167439 original size:11 final size:11
Alignment explanation
Indices: 46167422--46167483 Score: 54
Period size: 11 Copynumber: 5.6 Consensus size: 11
46167412 AGCATTTAAC
46167422 CAACATTCAGA
1 CAACATTCAGA
* *
46167433 CAGCATTTA-A
1 CAACATTCAGA
46167443 CCAACATTCAGA
1 -CAACATTCAGA
* *
46167455 CAACATTTAAA
1 CAACATTCAGA
*
46167466 CAACATTCGGA
1 CAACATTCAGA
*
46167477 CAGCATT
1 CAACATT
46167484 AGTATGCTAA
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
10 1 0.03
11 37 0.95
12 1 0.03
ACGTcount: A:0.42, C:0.26, G:0.10, T:0.23
Consensus pattern (11 bp):
CAACATTCAGA
Found at i:46167528 original size:113 final size:113
Alignment explanation
Indices: 46167410--46167685 Score: 444
Period size: 113 Copynumber: 2.4 Consensus size: 113
46167400 TAAAAAATGA
* * *
46167410 ACAGCATTTAACCAACATTCAGACAGCATTTAACCAACATTCAGACAACATTTAAACAACATTCG
1 ACAGCATTTAACCAACATTCAGACAACATTTAAACAACATTCGGACAACATTTAAACAACATTCG
* * * *
46167475 GACAGCATTAGTATGCTAAAAAATGAACAGCATTTAACCAACATTCAG
66 GACAACATTAGTATGCTAAAAAATCAACAACAATTAACCAACATTCAG
46167523 ACAGCATTTAACCAACATTCAGACAACATTTAAACAACATTCGGACAACATTTAAACAACATTCG
1 ACAGCATTTAACCAACATTCAGACAACATTTAAACAACATTCGGACAACATTTAAACAACATTCG
*
46167588 GACAACATTAGTATGCTAAAAAATCAACAACAATTAACCAACATTCGG
66 GACAACATTAGTATGCTAAAAAATCAACAACAATTAACCAACATTCAG
* * * *
46167636 ATAGCATTTGACCAACATTCGGACAACATTTAAACAACATTTGGACAACA
1 ACAGCATTTAACCAACATTCAGACAACATTTAAACAACATTCGGACAACA
46167686 CCTTGTCATC
Statistics
Matches: 151, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
113 151 1.00
ACGTcount: A:0.44, C:0.23, G:0.10, T:0.23
Consensus pattern (113 bp):
ACAGCATTTAACCAACATTCAGACAACATTTAAACAACATTCGGACAACATTTAAACAACATTCG
GACAACATTAGTATGCTAAAAAATCAACAACAATTAACCAACATTCAG
Found at i:46167530 original size:11 final size:11
Alignment explanation
Indices: 46167513--46167596 Score: 80
Period size: 11 Copynumber: 7.6 Consensus size: 11
46167503 AGCATTTAAC
46167513 CAACATTCAGA
1 CAACATTCAGA
* *
46167524 CAGCATTTA-A
1 CAACATTCAGA
46167534 CCAACATTCAGA
1 -CAACATTCAGA
* *
46167546 CAACATTTAAA
1 CAACATTCAGA
*
46167557 CAACATTCGGA
1 CAACATTCAGA
* *
46167568 CAACATTTAAA
1 CAACATTCAGA
*
46167579 CAACATTCGGA
1 CAACATTCAGA
46167590 CAACATT
1 CAACATT
46167597 AGTATGCTAA
Statistics
Matches: 56, Mismatches: 15, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
10 1 0.02
11 54 0.96
12 1 0.02
ACGTcount: A:0.44, C:0.25, G:0.08, T:0.23
Consensus pattern (11 bp):
CAACATTCAGA
Found at i:46168402 original size:42 final size:43
Alignment explanation
Indices: 46168299--46168413 Score: 133
Period size: 42 Copynumber: 2.7 Consensus size: 43
46168289 GTACAATGTC
* ** *
46168299 ATATCCCAGATATGGTCTAACATGTTATAATATATCGATGCCA
1 ATATCCCAGATATGGTCTTACATGAAATCATATATCGATGCCA
* * *
46168342 CTATCCCAGATAGGGTCTTACATGAAATCATATA-CGATTCCA
1 ATATCCCAGATATGGTCTTACATGAAATCATATATCGATGCCA
* * *
46168384 ATGTCCCAGACATGGTCTTACACGAAATCA
1 ATATCCCAGATATGGTCTTACATGAAATCA
46168414 CACCTCAAAA
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
42 32 0.53
43 28 0.47
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.29
Consensus pattern (43 bp):
ATATCCCAGATATGGTCTTACATGAAATCATATATCGATGCCA
Found at i:46169539 original size:15 final size:15
Alignment explanation
Indices: 46169519--46169548 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
46169509 AATTTTCACA
46169519 CATATCAAATAACAT
1 CATATCAAATAACAT
46169534 CATATCAAATAACAT
1 CATATCAAATAACAT
46169549 GTTGTAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (15 bp):
CATATCAAATAACAT
Found at i:46175103 original size:11 final size:10
Alignment explanation
Indices: 46175085--46175148 Score: 65
Period size: 11 Copynumber: 5.9 Consensus size: 10
46175075 CTAAAAAGAG
46175085 AACAACATTT
1 AACAACATTT
46175095 AACCAACATTT
1 AA-CAACATTT
*
46175106 GGACAACATTT
1 -AACAACATTT
46175117 AAACAACATTT
1 -AACAACATTT
*
46175128 ATACAATATTT
1 A-ACAACATTT
46175139 AAACAACATT
1 -AACAACATT
46175149 CGGACAACAT
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
10 3 0.07
11 40 0.89
12 2 0.04
ACGTcount: A:0.48, C:0.19, G:0.03, T:0.30
Consensus pattern (10 bp):
AACAACATTT
Found at i:46175111 original size:22 final size:22
Alignment explanation
Indices: 46175086--46175270 Score: 129
Period size: 22 Copynumber: 8.3 Consensus size: 22
46175076 TAAAAAGAGA
**
46175086 ACAACATTTAACCAACATTTGG
1 ACAACATTTAACCAACATTCAG
* * *
46175108 ACAACATTTAAACAACATTTAT
1 ACAACATTTAACCAACATTCAG
* * *
46175130 ACAATATTTAAACAACATTCGG
1 ACAACATTTAACCAACATTCAG
* * * * *
46175152 ACAACATTAGTATGCTAAAAAATGA-
1 ACAACATT--TA-AC-CAACATTCAG
*
46175177 ACAGCATTTAACCAACATTCAG
1 ACAACATTTAACCAACATTCAG
* * *
46175199 ATAGCATTTAACCAACATTCGG
1 ACAACATTTAACCAACATTCAG
* *
46175221 ACAGCATTTAACCAACATTTAG
1 ACAACATTTAACCAACATTCAG
** *
46175243 ACAGTATTTAAACAACATTCAG
1 ACAACATTTAACCAACATTCAG
46175265 ACAACA
1 ACAACA
46175271 CCTTGTCCTC
Statistics
Matches: 127, Mismatches: 31, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
21 5 0.04
22 107 0.84
23 2 0.02
24 2 0.02
25 7 0.06
26 4 0.03
ACGTcount: A:0.45, C:0.21, G:0.09, T:0.26
Consensus pattern (22 bp):
ACAACATTTAACCAACATTCAG
Found at i:46175145 original size:33 final size:33
Alignment explanation
Indices: 46175085--46175148 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
46175075 CTAAAAAGAG
**
46175085 AACAACATTTAACCAACATTTGGACAACATTTA
1 AACAACATTTAACCAACATTTAAACAACATTTA
*
46175118 AACAACATTTATA-CAATATTTAAACAACATT
1 AACAACATTTA-ACCAACATTTAAACAACATT
46175149 CGGACAACAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 26 0.96
34 1 0.04
ACGTcount: A:0.48, C:0.19, G:0.03, T:0.30
Consensus pattern (33 bp):
AACAACATTTAACCAACATTTAAACAACATTTA
Found at i:46175230 original size:91 final size:91
Alignment explanation
Indices: 46175039--46175239 Score: 224
Period size: 91 Copynumber: 2.2 Consensus size: 91
46175029 CAAAAATGAT
* * * *
46175039 CAGCATTTAAGCACCAATTTGGACAGCATTAATATGCTAAAAAGAGAACAACATTTAACCAACAT
1 CAGCATTTAAACAAC-ATTCGGACAACATTAATATGCTAAAAAGAGAACAACATTTAACCAACAT
** * *
46175104 TTGGACAACATTTAAACAACATTTATA
65 TCAGACAACATTTAAACAACATTCAGA
** * *
46175131 CAATATTTAAACAACATTCGGACAACATTAGTATGCTAAAAA-ATGAACAGCATTTAACCAACAT
1 CAGCATTTAAACAACATTCGGACAACATTAATATGCTAAAAAGA-GAACAACATTTAACCAACAT
* * * *
46175195 TCAGATAGCATTTAACCAACATTCGGA
65 TCAGACAACATTTAAACAACATTCAGA
*
46175222 CAGCATTTAACCAACATT
1 CAGCATTTAAACAACATT
46175240 TAGACAGTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
90 1 0.01
91 77 0.87
92 11 0.12
ACGTcount: A:0.44, C:0.20, G:0.10, T:0.26
Consensus pattern (91 bp):
CAGCATTTAAACAACATTCGGACAACATTAATATGCTAAAAAGAGAACAACATTTAACCAACATT
CAGACAACATTTAAACAACATTCAGA
Found at i:46177251 original size:23 final size:23
Alignment explanation
Indices: 46177207--46177251 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
46177197 ACTCATGTGT
*
46177207 AGTACTCTGTGTAGGCTACTATG
1 AGTACTCTGTGTAGACTACTATG
*
46177230 AGTACTCTTTGTAGTACT-CTAT
1 AGTACTCTGTGTAG-ACTACTAT
46177252 TTTCATATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (23 bp):
AGTACTCTGTGTAGACTACTATG
Found at i:46178749 original size:50 final size:50
Alignment explanation
Indices: 46178673--46178769 Score: 167
Period size: 50 Copynumber: 1.9 Consensus size: 50
46178663 TATATCTGCT
* *
46178673 ATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCGTCGATATGTGTG
1 ATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCAATATGTGTG
*
46178723 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATGT
1 ATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCAATATGT
46178770 AATTTCGAGT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (50 bp):
ATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCAATATGTGTG
Found at i:46181275 original size:47 final size:47
Alignment explanation
Indices: 46181055--46181694 Score: 922
Period size: 47 Copynumber: 13.4 Consensus size: 47
46181045 CAGCCAAGAG
* * *
46181055 AGTGTATATGTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
46181102 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
46181151 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
46181202 AGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AG--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
46181251 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
46181298 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
46181345 AGTGTATGTATATATGTATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTG-ATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
46181395 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
46181442 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
46181489 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
46181536 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
46181583 AGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * * *
46181629 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
46181676 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
46181695 TCCCGAAAGG
Statistics
Matches: 551, Mismatches: 32, Indels: 20
0.91 0.05 0.03
Matches are distributed among these distances:
46 41 0.07
47 324 0.59
48 6 0.01
49 94 0.17
50 39 0.07
51 43 0.08
53 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:46181509 original size:238 final size:236
Alignment explanation
Indices: 46181055--46181694 Score: 978
Period size: 238 Copynumber: 2.7 Consensus size: 236
46181045 CAGCCAAGAG
*
46181055 AGTGTATATGTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGAT
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGAT
46181120 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATAAGGCCTAATGGCC
66 AAGGCCTAAT-GCCGATGTGATGAATGTGAAA--G--TGTATATATGTGATAAGGCCTAATGGCC
* *
46181185 GATGTGATGAATGTGAAAGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGA
126 GACGTGATGAATGTGAAAG--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
* *
46181250 AAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
189 AAGTGTATATATGTAATAAGGCCTAATAGCCGACGTGATGAATGTGAA
* *
46181298 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTG-A
* *
46181363 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAC
65 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAC
*
46181428 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
129 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
* *
46181493 TATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
194 TATATATGTAATAAGGCCTAATAGCCGACGTGATGAATGTGAA
* *
46181536 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTA--TATATGTGAT
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGAT
* * * * *
46181599 AAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGT
66 AAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGACGT
* * * *
46181664 AATGGATGTGAAAGTGCATAAATGTGATAAG
131 GATGAATGTGAAAGTGTATATATGTGATAAG
46181695 TCCCGAAAGG
Statistics
Matches: 367, Mismatches: 29, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
234 74 0.20
235 12 0.03
236 7 0.02
238 136 0.37
240 44 0.12
242 1 0.00
243 60 0.16
244 33 0.09
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (236 bp):
AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGAT
AAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGACGT
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
TATATGTAATAAGGCCTAATAGCCGACGTGATGAATGTGAA
Found at i:46181869 original size:37 final size:37
Alignment explanation
Indices: 46181813--46181891 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
46181803 CCGAGCTCTA
* * *
46181813 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
46181850 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
46181887 AAGAC
1 AAGAC
46181892 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:46183725 original size:84 final size:84
Alignment explanation
Indices: 46183572--46183729 Score: 203
Period size: 85 Copynumber: 1.9 Consensus size: 84
46183562 ATGTGATTTT
* * ** *
46183572 TGTATGTGGCTATGGAACTGGAAGTTGAATGGTCGATAAGCATGTTGTGTTTGTATTCAAGTAAT
1 TGTATGTGGCTATGGAACTGGAAGTTGAATGGTAGAGAAGCAAATTGTGTTCGTATTCAAGTAAT
46183637 GTAAATGATATACTATATG
66 GTAAATGATATACTATATG
* * * *
46183656 TGTATGTGGCTATGGAACTGTGTA-TATGTATGGTAGAGACGCAAATTGTGTTCGTATTCATGTA
1 TGTATGTGGCTATGGAACTG-GAAGT-TGAATGGTAGAGAAGCAAATTGTGTTCGTATTCAAGTA
46183720 A-GTAAATGAT
64 ATGTAAATGAT
46183730 GCAGTGAAGC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
84 30 0.48
85 33 0.52
ACGTcount: A:0.29, C:0.08, G:0.27, T:0.37
Consensus pattern (84 bp):
TGTATGTGGCTATGGAACTGGAAGTTGAATGGTAGAGAAGCAAATTGTGTTCGTATTCAAGTAAT
GTAAATGATATACTATATG
Found at i:46183859 original size:43 final size:44
Alignment explanation
Indices: 46183789--46183933 Score: 184
Period size: 43 Copynumber: 3.1 Consensus size: 44
46183779 TCGAATGTAA
*
46183789 CGGGCAATGAAGTGTTACAGCGGTTGTGAGATTGGCACTAAGTGTG
1 CGGGCAAT-AAGTGTTTCA-CGGTTGTGAGATTGGCACTAAGTGTG
*
46183835 CGGGCAATAAGT-TTTCACGGTTGTGAGATTGGCTCTAAGTGTG
1 CGGGCAATAAGTGTTTCACGGTTGTGAGATTGGCACTAAGTGTG
46183878 CGGGCAATAAGGTGTTGTCACGGTTTCGTTGTGAGATTGGCACTAAGTGTG
1 CGGGCAATAA-GTGTT-TCAC-G----GTTGTGAGATTGGCACTAAGTGTG
46183929 CGGGC
1 CGGGC
46183934 TTGAAATGCA
Statistics
Matches: 88, Mismatches: 3, Indels: 11
0.86 0.03 0.11
Matches are distributed among these distances:
43 35 0.40
44 6 0.07
45 6 0.07
46 12 0.14
47 1 0.01
51 28 0.32
ACGTcount: A:0.21, C:0.14, G:0.36, T:0.29
Consensus pattern (44 bp):
CGGGCAATAAGTGTTTCACGGTTGTGAGATTGGCACTAAGTGTG
Found at i:46183957 original size:29 final size:29
Alignment explanation
Indices: 46183915--46183988 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
46183905 GTTGTGAGAT
* *
46183915 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
46183944 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
46183973 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
46183989 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:46184423 original size:40 final size:40
Alignment explanation
Indices: 46184301--46184575 Score: 261
Period size: 40 Copynumber: 6.9 Consensus size: 40
46184291 TTGAATGATG
** *
46184301 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* * ** * * *
46184341 TCCGGACTAAG-ACCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATA
*
46184380 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
46184420 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
46184460 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
46184500 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * * *
46184540 TCCGGGTTAGGTCCTGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
46184576 CGTGTATTCG
Statistics
Matches: 198, Mismatches: 34, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
39 25 0.13
40 161 0.81
41 12 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:46184521 original size:120 final size:120
Alignment explanation
Indices: 46184301--46184576 Score: 290
Period size: 120 Copynumber: 2.3 Consensus size: 120
46184291 TTGAATGATG
**
46184301 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGACCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGACCGAAGGCATT
* * ** *
46184364 GGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
65 CGTGCGAGTGACTAAATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGTGATATA
** * *
46184420 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAG-ACCGAAG-GCAT
* * * * * * *
46184484 TCGTGCTAGTGA-TATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATG
64 TCGTGCGAGTGACTAAATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGTGATATA
* * * * *
46184540 TCCGGGTTAGGTCCTGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
46184577 GTGTATTCGG
Statistics
Matches: 129, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
119 31 0.24
120 79 0.61
121 19 0.15
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGACCGAAGGCATTC
GTGCGAGTGACTAAATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:46188001 original size:47 final size:47
Alignment explanation
Indices: 46187766--46188404 Score: 869
Period size: 47 Copynumber: 13.4 Consensus size: 47
46187756 CAGCCAAGAG
*
46187766 AGTGTA-ATATGTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTG--ATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
46187814 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
46187863 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
46187914 AGTATATGTATATGTGAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTG-ATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
46187964 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
46188011 AGTGTATCTGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
46188058 AGTGTATGTATATATG-TAATAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGAT-A-AGGCCTAATAGCCGATGTGATGAATGTGAA
46188108 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
46188155 AGTG--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
46188200 AGTGTATATATGTGATAAGG--TAATGGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
46188245 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
46188292 AGTGTATATATGTGATAAGGCCTAAT-GCCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAG-CCGATGTGATGAATGTGAA
* * * * * * * * *
46188339 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
46188386 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
46188405 TCCCGAAAGG
Statistics
Matches: 542, Mismatches: 28, Indels: 43
0.88 0.05 0.07
Matches are distributed among these distances:
45 88 0.16
46 1 0.00
47 253 0.47
48 23 0.04
49 50 0.09
50 73 0.13
51 50 0.09
53 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:46188058 original size:144 final size:142
Alignment explanation
Indices: 46187766--46188353 Score: 886
Period size: 144 Copynumber: 4.1 Consensus size: 142
46187756 CAGCCAAGAG
*
46187766 AGTGTA-ATATGTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTG
1 AGTGTATATATGTG-AATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA--TATATGTG
* *
46187830 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATAAGGCCTAATGG
63 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G--TGTATATATGTGATAAGGCCTAATAG
46187895 CCGATGTGATGAATGTGAA
124 CCGATGTGATGAATGTGAA
* *
46187914 AGTATATGTATATGTGAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 AGTGTA--TATATGTGAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
46187979 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATCTGTGTGATAAGGCCTAATAGCCGAT
64 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
46188044 GTGATGAATGTGAA
129 GTGATGAATGTGAA
*
46188058 AGTGTATGTATATATGTAAT-AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 AGTGTA--TATATGTG-AATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
46188122 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGATAAGGCCTAATAGCCGA
63 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
46188185 TGTGATGAATGTGAA
128 TGTGATGAATGTGAA
* *
46188200 AGTGTATATATGTG-ATAAGG--TAATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGTGTATATATGTGAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* *
46188262 AGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCCGATG
66 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG-CCGATG
46188326 TGATGAATGTGAA
130 TGATGAATGTGAA
46188339 AGTGTATATATGTGA
1 AGTGTATATATGTGA
46188354 CAGGGCCGAG
Statistics
Matches: 412, Mismatches: 19, Indels: 26
0.90 0.04 0.06
Matches are distributed among these distances:
137 72 0.17
138 3 0.01
139 56 0.14
140 7 0.02
142 45 0.11
144 135 0.33
145 3 0.01
146 1 0.00
148 44 0.11
150 39 0.09
151 7 0.02
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (142 bp):
AGTGTATATATGTGAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
GATGAATGTGAA
Found at i:46188145 original size:22 final size:22
Alignment explanation
Indices: 46188117--46188190 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
46188107 AAGTGTATAT
46188117 ATGTGATAAGGCCTAATAGCCG
1 ATGTGATAAGGCCTAATAGCCG
* *** ***
46188139 ATGTGATGAATGTGAAAGT-GTAT
1 ATGTGAT-AAGGCCTAA-TAGCCG
46188162 ATGTGATAAGGCCTAATAGCCG
1 ATGTGATAAGGCCTAATAGCCG
46188184 ATGTGAT
1 ATGTGAT
46188191 GAATGTGAAA
Statistics
Matches: 35, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
21 1 0.03
22 20 0.57
23 13 0.37
24 1 0.03
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATAGCCG
Found at i:46188368 original size:94 final size:94
Alignment explanation
Indices: 46187766--46188404 Score: 878
Period size: 97 Copynumber: 6.7 Consensus size: 94
46187756 CAGCCAAGAG
46187766 AGTGTA-ATATGTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTG
1 AGTGTATATATGTG--ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--TATATGTG
*
46187830 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62 ATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
46187863 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATGTATATG
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--TATATG
46187928 TGAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
60 TG-ATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * *
46187964 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATCTGTGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
46188029 GGCCTAATAGCCGATGTGATGAATGTGAA
66 GGCCTAATAGCCGATGTGATGAATGTGAA
* *
46188058 AGTGTATGTATATATG-TAATAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 AGTGTA--TATATGTGAT-A-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
46188122 ATAAGGCCTAATAGCCGATGTGATGAATGTGAA
62 ATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
46188155 AGTG--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
46188218 GG--TAATGGCCGACGTGATGAATGTGAA
66 GGCCTAATAGCCGATGTGATGAATGTGAA
*
46188245 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
46188310 GGCCTAAT-GCCCGATGTGATGAATGTGAA
66 GGCCTAATAG-CCGATGTGATGAATGTGAA
* * * * * * * * * *
46188339 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAAAGTGCATAAATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
46188404 G
66 G
46188405 TCCCGAAAGG
Statistics
Matches: 496, Mismatches: 30, Indels: 35
0.88 0.05 0.06
Matches are distributed among these distances:
90 27 0.05
92 109 0.22
93 9 0.02
94 117 0.24
95 7 0.01
96 7 0.01
97 126 0.25
99 2 0.00
100 48 0.10
101 37 0.07
102 7 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (94 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:46188580 original size:37 final size:37
Alignment explanation
Indices: 46188524--46188602 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
46188514 CCGAGCTCTA
* * *
46188524 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
46188561 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
46188598 AAGAC
1 AAGAC
46188603 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:46194046 original size:51 final size:51
Alignment explanation
Indices: 46193970--46194150 Score: 197
Period size: 51 Copynumber: 3.5 Consensus size: 51
46193960 GAGAACTTAG
** * ** *
46193970 GTGTAGTACTCTGTGCAGGCTACTATGAGTATAAGATAGTTATGGTCACTT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTATCGGATAGTTATGGTCACAT
* * *
46194021 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAGCTT-TGATCACGT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTATCGGATAG-TTATGGTCACAT
* *
46194072 GTGTAGTACTCTA-TGCAGGCTACTACGTGTATCGGAT-GTTATTGGTCACAT
1 GTGTAGTACT-AAGTGCAGGCTACTATGTGTATCGGATAGTTA-TGGTCACAT
**
46194123 GTGTAGTACTAAGTATAGGCTACTATGT
1 GTGTAGTACTAAGTGCAGGCTACTATGT
46194151 CAACCGGATG
Statistics
Matches: 108, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
49 2 0.02
50 2 0.02
51 101 0.94
52 3 0.03
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.34
Consensus pattern (51 bp):
GTGTAGTACTAAGTGCAGGCTACTATGTGTATCGGATAGTTATGGTCACAT
Found at i:46194146 original size:102 final size:102
Alignment explanation
Indices: 46193970--46194170 Score: 278
Period size: 102 Copynumber: 2.0 Consensus size: 102
46193960 GAGAACTTAG
* * *
46193970 GTGTAGTACTCTGTGCAGGCTACTATGAGTATAAGATAGTTATGGTCACTTGTGTAGTACTAAGT
1 GTGTAGTACTCTATGCAGGCTACTACGAGTATAAGATAGTTATGGTCACATGTGTAGTACTAAGT
* ** *
46194035 GCAGGCTACTATGTGTACCGGATAGCTTTGATCACGT
66 ACAGGCTACTATGTCAACCGGATAGCATTGATCACGT
* **
46194072 GTGTAGTACTCTATGCAGGCTACTACGTGTATCGGAT-GTTATTGGTCACATGTGTAGTACTAAG
1 GTGTAGTACTCTATGCAGGCTACTACGAGTATAAGATAGTTA-TGGTCACATGTGTAGTACTAAG
* *
46194136 TATAGGCTACTATGTCAACCGGATGGCATTGATCA
65 TACAGGCTACTATGTCAACCGGATAGCATTGATCA
46194171 TAAGGGTGGT
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
101 4 0.05
102 82 0.95
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (102 bp):
GTGTAGTACTCTATGCAGGCTACTACGAGTATAAGATAGTTATGGTCACATGTGTAGTACTAAGT
ACAGGCTACTATGTCAACCGGATAGCATTGATCACGT
Found at i:46200094 original size:17 final size:18
Alignment explanation
Indices: 46200057--46200097 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
46200047 CATTCATTTC
46200057 AATATTGTACAACTACAA
1 AATATTGTACAACTACAA
* *
46200075 AATATT-TACCACTACCA
1 AATATTGTACAACTACAA
46200092 AATATT
1 AATATT
46200098 CATTTTCCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.32
Consensus pattern (18 bp):
AATATTGTACAACTACAA
Found at i:46206611 original size:147 final size:135
Alignment explanation
Indices: 46206447--46206727 Score: 400
Period size: 147 Copynumber: 2.0 Consensus size: 135
46206437 GAAGAAAGGA
* *
46206447 AAAAAAAGAAAGAAGAGAGGGACAAGTGAGAGTAGTGAGAAATAAGAAAAATAATAATAATAAAA
1 AAAAAAAGAAAGAAGAGAGAGACAAGTGAGAGTAGTGAGAAACAAG----A-AA-AATAATAAAA
46206512 AGAAAAAGGACAAAAAGGAAAAAAAGTTGAAAAGGTTAAAAATTAAAAAAAAATGTTTAAAATAT
60 A-AAAAAGG--AAAAAGGAAAAAAA-TTGAAAAGGTTAAAAATT--AAAAAAATGTTTAAAATAT
46206577 GTGTCGATGACGTGGAG
119 GTGTCGATGACGTGGAG
*
46206594 AAAAAAAGAAAGAAGAGAGAGACAAGTGAGAGTAGTGAGAAACAAGAAAAATAATAAGAAAAAAA
1 AAAAAAAGAAAGAAGAGAGAGACAAGTGAGAGTAGTGAGAAACAAGAAAAATAATAAAAAAAAAA
* * *
46206659 GGAAAAATGATAAAAATTGAAAAGGTTAAAAATTTAAAAAATGTTTAAAATATGTGTCGATGACG
66 GGAAAAAGGAAAAAAATTGAAAAGGTTAAAAATTAAAAAAATGTTTAAAATATGTGTCGATGACG
46206724 TGGA
131 TGGA
46206728 TGTCAACTTT
Statistics
Matches: 128, Mismatches: 6, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
135 34 0.27
137 18 0.14
138 12 0.09
140 7 0.05
141 10 0.08
142 2 0.02
143 1 0.01
147 44 0.34
ACGTcount: A:0.58, C:0.03, G:0.22, T:0.17
Consensus pattern (135 bp):
AAAAAAAGAAAGAAGAGAGAGACAAGTGAGAGTAGTGAGAAACAAGAAAAATAATAAAAAAAAAA
GGAAAAAGGAAAAAAATTGAAAAGGTTAAAAATTAAAAAAATGTTTAAAATATGTGTCGATGACG
TGGAG
Found at i:46208689 original size:40 final size:39
Alignment explanation
Indices: 46208592--46208677 Score: 100
Period size: 39 Copynumber: 2.2 Consensus size: 39
46208582 GATGTCAGGG
* * * *
46208592 GACGTGTCAGCAAATCGCATCCACATCAGCGCGATTACT
1 GACGTGGCAACAAATCGCGTCCACATAAGCGCGATTACT
* * *
46208631 TACGTGGCAACAAATCGCGTCCACGTAAGCGCGATTTGCT
1 GACGTGGCAACAAATCGCGTCCACATAAGCGCGA-TTACT
46208671 GACGTGG
1 GACGTGG
46208678 AAGGAAATCG
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
39 28 0.74
40 10 0.26
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.21
Consensus pattern (39 bp):
GACGTGGCAACAAATCGCGTCCACATAAGCGCGATTACT
Found at i:46210408 original size:47 final size:47
Alignment explanation
Indices: 46210339--46210434 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
46210329 TTTGGTCTTC
46210339 AAACAATGTTTTATATTACTTATATTGTCTGATTAAAAATTATAATT
1 AAACAATGTTTTATATTACTTATATTGTCTGATTAAAAATTATAATT
*
46210386 AAACAATGTTTTATATTACTTATATTGTTTGATTAAAAATTATAATT
1 AAACAATGTTTTATATTACTTATATTGTCTGATTAAAAATTATAATT
46210433 AA
1 AA
46210435 CGCTACAAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.47
Consensus pattern (47 bp):
AAACAATGTTTTATATTACTTATATTGTCTGATTAAAAATTATAATT
Found at i:46211047 original size:21 final size:21
Alignment explanation
Indices: 46211008--46211048 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
46210998 TAAAGTAGAT
*
46211008 TATATATTATTTTTATAGTAC
1 TATATATTATATTTATAGTAC
46211029 TATATATTATGATTT-TAGTA
1 TATATATTAT-ATTTATAGTA
46211049 AATTCATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.56
Consensus pattern (21 bp):
TATATATTATATTTATAGTAC
Found at i:46211088 original size:37 final size:37
Alignment explanation
Indices: 46211031--46211128 Score: 103
Period size: 37 Copynumber: 2.7 Consensus size: 37
46211021 TATAGTACTA
* *
46211031 TATATTATG-ATTTTAGTAAATTCATA-TAAGAAAAAT
1 TATATTAAGAATTTTATTAAATT-ATATTAAGAAAAAT
* *
46211067 TATATTAAGAATTTTATTAAATTATATTTAATAATAAT
1 TATATTAAGAATTTTATTAAATTATA-TTAAGAAAAAT
* *
46211105 TATATTAA-AATATGATTAAATTAT
1 TATATTAAGAATTTTATTAAATTAT
46211129 TTATTATTTA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
36 11 0.21
37 26 0.49
38 16 0.30
ACGTcount: A:0.48, C:0.01, G:0.05, T:0.46
Consensus pattern (37 bp):
TATATTAAGAATTTTATTAAATTATATTAAGAAAAAT
Found at i:46211094 original size:10 final size:10
Alignment explanation
Indices: 46211063--46211128 Score: 50
Period size: 10 Copynumber: 6.7 Consensus size: 10
46211053 CATATAAGAA
46211063 AAATTATATT
1 AAATTATATT
*
46211073 AAGAATTTTATT
1 -A-AATTATATT
46211085 AAATTATATT
1 AAATTATATT
*
46211095 TAA-TA-A-T
1 AAATTATATT
46211102 -AATTATATT
1 AAATTATATT
*
46211111 AAAATATGATT
1 AAATTAT-ATT
46211122 AAATTAT
1 AAATTAT
46211129 TTATTATTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
6 2 0.05
7 3 0.07
8 2 0.05
9 3 0.07
10 15 0.34
11 11 0.25
12 8 0.18
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (10 bp):
AAATTATATT
Found at i:46211346 original size:16 final size:16
Alignment explanation
Indices: 46211325--46211381 Score: 78
Period size: 16 Copynumber: 3.6 Consensus size: 16
46211315 AATTGAATTA
46211325 CTATTACAGCTCTATT
1 CTATTACAGCTCTATT
* *
46211341 CTATTATAACTCTATT
1 CTATTACAGCTCTATT
*
46211357 CAATTACAGCTCTATT
1 CTATTACAGCTCTATT
*
46211373 CCATTACAG
1 CTATTACAG
46211382 TGAACTAAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.40
Consensus pattern (16 bp):
CTATTACAGCTCTATT
Found at i:46213773 original size:16 final size:17
Alignment explanation
Indices: 46213754--46213786 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
46213744 AAATTAATTT
46213754 TTTATTAAAATT-TTTA
1 TTTATTAAAATTGTTTA
*
46213770 TTTATTTAAATTGTTTA
1 TTTATTAAAATTGTTTA
46213787 GTTGATAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (17 bp):
TTTATTAAAATTGTTTA
Found at i:46214069 original size:9 final size:9
Alignment explanation
Indices: 46214055--46214099 Score: 81
Period size: 9 Copynumber: 5.0 Consensus size: 9
46214045 CCGTTAACCG
46214055 AACCGAATT
1 AACCGAATT
46214064 AACCGAATT
1 AACCGAATT
*
46214073 ACCCGAATT
1 AACCGAATT
46214082 AACCGAATT
1 AACCGAATT
46214091 AACCGAATT
1 AACCGAATT
46214100 GAATCACTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.42, C:0.24, G:0.11, T:0.22
Consensus pattern (9 bp):
AACCGAATT
Found at i:46214156 original size:6 final size:7
Alignment explanation
Indices: 46214123--46214169 Score: 62
Period size: 7 Copynumber: 6.7 Consensus size: 7
46214113 ATTAAATTAT
46214123 TTTTAGA
1 TTTTAGA
46214130 CTTTTAGA
1 -TTTTAGA
46214138 TTTTAGA
1 TTTTAGA
46214145 TTTTAG-
1 TTTTAGA
46214151 TTTTAG-
1 TTTTAGA
46214157 TTTTAGAA
1 TTTTAG-A
46214165 TTTTA
1 TTTTA
46214170 TTTTTATTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
6 12 0.32
7 13 0.35
8 12 0.32
ACGTcount: A:0.26, C:0.02, G:0.13, T:0.60
Consensus pattern (7 bp):
TTTTAGA
Found at i:46214186 original size:20 final size:20
Alignment explanation
Indices: 46214131--46214175 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
46214121 ATTTTTAGAC
46214131 TTTTAGATTTTAG-ATTTTAG
1 TTTTAG-TTTTAGAATTTTAG
*
46214151 TTTTAGTTTTAGAATTTTAT
1 TTTTAGTTTTAGAATTTTAG
46214171 TTTTA
1 TTTTA
46214176 TTTATTAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.24, C:0.00, G:0.11, T:0.64
Consensus pattern (20 bp):
TTTTAGTTTTAGAATTTTAG
Found at i:46216721 original size:16 final size:16
Alignment explanation
Indices: 46216700--46216730 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46216690 TATGTTAAAG
46216700 CATATAAATTTGAAAC
1 CATATAAATTTGAAAC
*
46216716 CATATATATTTGAAA
1 CATATAAATTTGAAA
46216731 ACTCTTTCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (16 bp):
CATATAAATTTGAAAC
Found at i:46216933 original size:18 final size:19
Alignment explanation
Indices: 46216912--46216948 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
46216902 TTAAAAAATA
46216912 TATAAAT-TTTGGAATTTT
1 TATAAATATTTGGAATTTT
*
46216930 TATAAATATTTTGAATTTT
1 TATAAATATTTGGAATTTT
46216949 AAAAATTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (19 bp):
TATAAATATTTGGAATTTT
Found at i:46216947 original size:19 final size:20
Alignment explanation
Indices: 46216917--46216985 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
46216907 AAATATATAA
46216917 ATTTTGGAATTTTTATAAA-T
1 ATTTT-GAATTTTTATAAATT
*
46216937 ATTTTGAA-TTTTAAAAATT
1 ATTTTGAATTTTTATAAATT
*
46216956 AGTTTGAATTTTTGA-AAATT
1 ATTTTGAATTTTT-ATAAATT
46216976 ATTTTGAATT
1 ATTTTGAATT
46216986 ATTTTGTAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
18 8 0.19
19 11 0.26
20 23 0.53
21 1 0.02
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.54
Consensus pattern (20 bp):
ATTTTGAATTTTTATAAATT
Found at i:46225180 original size:131 final size:130
Alignment explanation
Indices: 46224930--46225200 Score: 371
Period size: 131 Copynumber: 2.1 Consensus size: 130
46224920 CTTTTAATTC
* * * * * * *
46224930 AATTGTGGCGCATCAATAAATTGTATGGACAATGATAATAAAATGATAATAGTAATTGTGATGCA
1 AATTGTGGTGCATCAATAAATTGCATGGACAATGACAATAAAATCATAACAGTAATTATGATGAA
* *
46224995 TCAATTAAATCGAATGAGTAATTACAATAAATATTAATTAATGAAAAATCTTTTAATTAATGCAA
66 TCAATTAAATCGAATGAGTAATTAAAATAAAAATTAATTAATGAAAAATCTTTTAATTAATGCAA
** * *
46225060 AATTGTGGTGCATCAATTAAATTGCATGGGTAATTACAATAAAATCATAACAGTAATTATGGTGA
1 AATTGTGGTGCATCAA-TAAATTGCATGGACAATGACAATAAAATCATAACAGTAATTATGATGA
* * * * *
46225125 ATTAATTAAATTGCATGAGTAATTAAAATAAAAATTAATTAATGGAAAATCTTTTAATTGATGCA
65 ATCAATTAAATCGAATGAGTAATTAAAATAAAAATTAATTAATGAAAAATCTTTTAATTAATGCA
46225190 A
130 A
46225191 AATTGTGGTG
1 AATTGTGGTG
46225201 TAAAATCTTG
Statistics
Matches: 122, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
130 15 0.12
131 107 0.88
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.34
Consensus pattern (130 bp):
AATTGTGGTGCATCAATAAATTGCATGGACAATGACAATAAAATCATAACAGTAATTATGATGAA
TCAATTAAATCGAATGAGTAATTAAAATAAAAATTAATTAATGAAAAATCTTTTAATTAATGCAA
Found at i:46232679 original size:10 final size:10
Alignment explanation
Indices: 46232644--46232681 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
46232634 CCTCGGCAAA
46232644 TATTAAAAAT
1 TATTAAAAAT
* *
46232654 TCTTTAAAAT
1 TATTAAAAAT
46232664 TA-TAAAAAT
1 TATTAAAAAT
46232673 TATTAAAAA
1 TATTAAAAA
46232682 GGTGGTTTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (10 bp):
TATTAAAAAT
Found at i:46234186 original size:43 final size:43
Alignment explanation
Indices: 46234127--46234282 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
46234117 ATGTATTTTC
* *
46234127 GTGTAACACCACGTCTGGGACGTTGGCATTGAATTGTGTATAT
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGAATTGTGTATAT
* * * *
46234170 GTGTAAGACCATGTCTGGGACATTGGCATCGTATT-TG-ATTT
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGAATTGTGTATAT
*
46234211 GTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATATGAT-TACA-
1 GTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGA-AT-TG-TGTATAT
*
46234255 -TGTAAGACCACGTCTGGGATGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
46234283 TTTACGAGCC
Statistics
Matches: 92, Mismatches: 12, Indels: 18
0.75 0.10 0.15
Matches are distributed among these distances:
41 30 0.33
42 5 0.05
43 54 0.59
44 1 0.01
45 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGAATTGTGTATAT
Found at i:46243459 original size:36 final size:36
Alignment explanation
Indices: 46243328--46243461 Score: 101
Period size: 36 Copynumber: 3.6 Consensus size: 36
46243318 CATCATTATA
*
46243328 TTCGTC-GATTTATCTGACTAGTGCTGGGCGTAAATC
1 TTCGTCAG-TTTATCTGACTAGTGCTAGGCGTAAATC
* ** * * * *
46243364 TTCGTCAGCTTGCCTGACTAGTACTAGGCACATCATTATA
1 TTCGTCAGTTTATCTGACTAGTGCTAGG--CGT-A-AATC
* * *
46243404 TTCAAT-AGTTTCTCCGACTAGTGCTAGGCGTAAATC
1 TTC-GTCAGTTTATCTGACTAGTGCTAGGCGTAAATC
46243440 TTCGTCAGTTTATCTGACTAGT
1 TTCGTCAGTTTATCTGACTAGT
46243462 TTTGGGCACA
Statistics
Matches: 71, Mismatches: 20, Indels: 14
0.68 0.19 0.13
Matches are distributed among these distances:
35 1 0.01
36 40 0.56
37 2 0.03
38 4 0.06
39 1 0.01
40 22 0.31
41 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (36 bp):
TTCGTCAGTTTATCTGACTAGTGCTAGGCGTAAATC
Found at i:46243471 original size:76 final size:76
Alignment explanation
Indices: 46243304--46243461 Score: 219
Period size: 76 Copynumber: 2.1 Consensus size: 76
46243294 AGTTTACCCT
* * * * *
46243304 ACTAGTGCTAGGCACATCATTATATTCGTCGATTTATCTGACTAGTGCTGGGCGTAAATCTTCGT
1 ACTAGTACTAGGCACATCATTATATTCATAGATTTATCCGACTAGTGCTAGGCGTAAATCTTCGT
*
46243369 CAGCTTGCCTG
66 CAGCTTACCTG
*
46243380 ACTAGTACTAGGCACATCATTATATTCAATAG-TTTCTCCGACTAGTGCTAGGCGTAAATCTTCG
1 ACTAGTACTAGGCACATCATTATATTC-ATAGATTTATCCGACTAGTGCTAGGCGTAAATCTTCG
* *
46243444 TCAGTTTATCTG
65 TCAGCTTACCTG
46243456 ACTAGT
1 ACTAGT
46243462 TTTGGGCACA
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
76 70 0.97
77 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.35
Consensus pattern (76 bp):
ACTAGTACTAGGCACATCATTATATTCATAGATTTATCCGACTAGTGCTAGGCGTAAATCTTCGT
CAGCTTACCTG
Found at i:46247458 original size:37 final size:37
Alignment explanation
Indices: 46247417--46247490 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
46247407 TATCACCCTG
* *
46247417 GTAAAACTAATATTGTAGCTGAAGCATTGAGTAGGAA
1 GTAAAACTAAAATTGAAGCTGAAGCATTGAGTAGGAA
*
46247454 GTAAAACTAAAATTGAAGCTGACGCATTGAGTAGGAA
1 GTAAAACTAAAATTGAAGCTGAAGCATTGAGTAGGAA
46247491 AGCAACAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.24
Consensus pattern (37 bp):
GTAAAACTAAAATTGAAGCTGAAGCATTGAGTAGGAA
Found at i:46250102 original size:21 final size:21
Alignment explanation
Indices: 46250076--46250122 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
46250066 GGGACCGCTA
46250076 AACCGAGTCGTAAAAATAATT
1 AACCGAGTCGTAAAAATAATT
46250097 AACCGAGTCGTAAAAATAATT
1 AACCGAGTCGTAAAAATAATT
46250118 AACCG
1 AACCG
46250123 TCATAATTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.47, C:0.17, G:0.15, T:0.21
Consensus pattern (21 bp):
AACCGAGTCGTAAAAATAATT
Found at i:46251790 original size:39 final size:40
Alignment explanation
Indices: 46251690--46251914 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
46251680 TTGAATGATG
* * * *
46251690 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
46251730 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
46251770 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46251809 TCCGGGTTAAGTCCCGAAGACATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46251849 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
46251890 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46251915 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 35 0.21
40 118 0.72
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46251932 original size:80 final size:80
Alignment explanation
Indices: 46251690--46251947 Score: 233
Period size: 80 Copynumber: 3.2 Consensus size: 80
46251680 TTGAATGATG
* * * * * * * *
46251690 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCAGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGACAT
** *
46251753 TTGTGCGAGAT-ACTAAT
64 TTGAACGAG-TGACTAAA
* *
46251770 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGACATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGACATTT
** *
46251834 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* *
46251849 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGACATT
*
46251913 TGAACGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
46251929 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
46251948 TACGTGATTT
Statistics
Matches: 153, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.01
79 72 0.47
80 77 0.50
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGACATTT
GAACGAGTGACTAAA
Found at i:46259947 original size:40 final size:40
Alignment explanation
Indices: 46259709--46259933 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
46259699 TTGAATGATG
* * * *
46259709 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
46259749 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
46259789 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46259828 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46259868 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
46259909 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46259934 AACGAGGAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 122 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46259955 original size:119 final size:119
Alignment explanation
Indices: 46259709--46259966 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
46259699 TTGAATGATG
* *
46259709 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
46259774 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
* * * **
46259828 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
46259891 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAA
* *
46259948 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
46259967 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.70
120 32 0.27
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
Found at i:46261591 original size:40 final size:40
Alignment explanation
Indices: 46261531--46261649 Score: 115
Period size: 40 Copynumber: 3.1 Consensus size: 40
46261521 TTAGCAAATC
* *
46261531 TTCGTTAGTTTACCTTACTAGTGTTGGGCACATCAATATA
1 TTCGTCAGTTTACCTAACTAGTGTTGGGCACATCAATATA
* *
46261571 TTCGTC-GATTTATCTAACTAGTGTT--G-A-GTGCAA-ATA
1 TTCGTCAG-TTTACCTAACTAGTGTTGGGCACAT-CAATATA
* * *
46261607 TTCGTCAGTTTACCTAACTTGTGCTGGGCACATCATTATA
1 TTCGTCAGTTTACCTAACTAGTGTTGGGCACATCAATATA
46261647 TTC
1 TTC
46261650 ATTGGTTTAT
Statistics
Matches: 62, Mismatches: 9, Indels: 16
0.71 0.10 0.18
Matches are distributed among these distances:
36 24 0.39
37 5 0.08
38 2 0.03
39 4 0.06
40 27 0.44
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (40 bp):
TTCGTCAGTTTACCTAACTAGTGTTGGGCACATCAATATA
Found at i:46261624 original size:36 final size:39
Alignment explanation
Indices: 46261524--46261639 Score: 98
Period size: 36 Copynumber: 3.0 Consensus size: 39
46261514 TTTGTGGTTA
* * *
46261524 GCAAATCTTCGTTAGTTTACCTTACTAGTGTTGGGCACAT
1 GCAAATATTCGTCAGTTTACCTAACTAGTGTT-GGCACAT
* *
46261564 -CAATATATTCGTC-GATTTATCTAACTAGTGTT-G-A-GT
1 GCAA-ATATTCGTCAG-TTTACCTAACTAGTGTTGGCACAT
* *
46261600 GCAAATATTCGTCAGTTTACCTAACTTGTGCTGGGCACAT
1 GCAAATATTCGTCAGTTTACCTAACTAGTG-TTGGCACAT
46261640 CATTATATTC
Statistics
Matches: 59, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
36 23 0.39
37 6 0.10
38 2 0.03
39 5 0.08
40 23 0.39
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (39 bp):
GCAAATATTCGTCAGTTTACCTAACTAGTGTTGGCACAT
Found at i:46261681 original size:76 final size:75
Alignment explanation
Indices: 46261525--46261790 Score: 221
Period size: 76 Copynumber: 3.5 Consensus size: 75
46261515 TTGTGGTTAG
* * * * * * * *
46261525 CAAATCTTCGTTAGTTTACCTTACTAGTGTTGGGCACATCAATATATTCGTCGATTTATCTAACT
1 CAAATATTCGTCAGTTTACCTGACTAGTGCTGGGCACATCATTATATTC-TTGGTTTATCCAACT
* * * **
46261590 AGTGTTGAGTG
65 AGAGCTGGGCA
* * *
46261601 CAAATATTCGTCAGTTTACCTAACTTGTGCTGGGCACATCATTATATTCATTGGTTTATCCGACT
1 CAAATATTCGTCAGTTTACCTGACTAGTGCTGGGCACATCATTATATTC-TTGGTTTATCCAACT
46261666 AGAGCTGGGCA
65 AGAGCTGGGCA
* * * * * * * *
46261677 CAAATCTTTGTTAGTTTAACTGACTAGTACTAGGCACATCATTATAATT-TTCAGTTTCTCCAAC
1 CAAATATTCGTCAGTTTACCTGACTAGTGCTGGGCACATCATTAT-ATTCTT-GGTTTATCCAAC
46261741 TAGCA-CTGGGCA
64 TAG-AGCTGGGCA
* * * *
46261753 CAAATATTCATCACTTTATCTGACTAGTGTTGGGCACA
1 CAAATATTCGTCAGTTTACCTGACTAGTGCTGGGCACA
46261791 ACCTCTATAA
Statistics
Matches: 151, Mismatches: 36, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
75 2 0.01
76 145 0.96
77 4 0.03
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (75 bp):
CAAATATTCGTCAGTTTACCTGACTAGTGCTGGGCACATCATTATATTCTTGGTTTATCCAACTA
GAGCTGGGCA
Found at i:46264234 original size:63 final size:62
Alignment explanation
Indices: 46264119--46264271 Score: 162
Period size: 63 Copynumber: 2.4 Consensus size: 62
46264109 GGCCCATGTG
* * * * *
46264119 TCTTTAATTCCAAAACAATGAGTTACACGGCCTGGACACAAGTCCATTTCTCTAGCCCGTAT
1 TCTTTAATTCCAAAACAGTGAGTTACACGGCCTGAAAACAAGCCCATGTCTCTAGCCCGTAT
*** * *
46264181 TCTTATAATTCCAAAACAGTGAGTTACACGGCCTGAAAATTTGCCCGTGTCTCTAGCCCGTGT
1 TCTT-TAATTCCAAAACAGTGAGTTACACGGCCTGAAAACAAGCCCATGTCTCTAGCCCGTAT
* ** *
46264244 GCTTCTAATTTTAAAACAGTGTGTTACA
1 TCTT-TAATTCCAAAACAGTGAGTTACA
46264272 TGACCTGCCT
Statistics
Matches: 75, Mismatches: 15, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
62 4 0.05
63 71 0.95
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (62 bp):
TCTTTAATTCCAAAACAGTGAGTTACACGGCCTGAAAACAAGCCCATGTCTCTAGCCCGTAT
Found at i:46270490 original size:21 final size:21
Alignment explanation
Indices: 46270459--46270516 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
46270449 TTTAAATAAA
* *
46270459 AAAATAAAAAATTTAATATCT
1 AAAATATAAAATTTAATAACT
**
46270480 CAAAAT-TAAAATGAAATAACT
1 -AAAATATAAAATTTAATAACT
46270501 AAAATATAAAATTTAA
1 AAAATATAAAATTTAA
46270517 AAGAATACAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
20 5 0.17
21 19 0.66
22 5 0.17
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (21 bp):
AAAATATAAAATTTAATAACT
Found at i:46272439 original size:23 final size:22
Alignment explanation
Indices: 46272382--46272439 Score: 55
Period size: 23 Copynumber: 2.5 Consensus size: 22
46272372 TACTCGAATA
* * *
46272382 AATAATTCGAGTTTTGAATTTG
1 AATAATTCGAATTTTCAATTCG
46272404 AATCAAGTT-GAATTTTACAATTCG
1 AAT-AA-TTCGAATTTT-CAATTCG
46272428 AATAATTCGAAT
1 AATAATTCGAAT
46272440 AATAAATTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
22 5 0.17
23 14 0.48
24 10 0.34
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.40
Consensus pattern (22 bp):
AATAATTCGAATTTTCAATTCG
Found at i:46272602 original size:20 final size:20
Alignment explanation
Indices: 46272577--46272631 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
46272567 ATATATTTTA
*
46272577 AAAAAATTATAAAAAATTCT
1 AAAAAATTATAAAAAATTAT
*
46272597 AAAAAATTCTAAAAACA-TAT
1 AAAAAATTATAAAAA-ATTAT
46272617 AAAAAA--ATAAAAAAT
1 AAAAAATTATAAAAAAT
46272632 AAAATTTTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 1 0.03
18 6 0.20
20 22 0.73
21 1 0.03
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAAAATTATAAAAAATTAT
Found at i:46273739 original size:31 final size:31
Alignment explanation
Indices: 46273704--46273762 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
46273694 ACAAAGAATA
*
46273704 CTTTCAATACTC-GATACATTTTCATTCTATT
1 CTTTCAATACTCAG-TACAATTTCATTCTATT
46273735 CTTTCAATACTCAGTACAATTTCATTCT
1 CTTTCAATACTCAGTACAATTTCATTCT
46273763 TTCAATACAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 25 0.96
32 1 0.04
ACGTcount: A:0.27, C:0.24, G:0.03, T:0.46
Consensus pattern (31 bp):
CTTTCAATACTCAGTACAATTTCATTCTATT
Found at i:46278810 original size:31 final size:31
Alignment explanation
Indices: 46278775--46278836 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
46278765 AATACAAAGA
* *
46278775 ATTCTTTCAATACTCAATACATTTTCATTCT
1 ATTCTTTCAATACCCAATACAGTTTCATTCT
* * *
46278806 ATTCTTTTAATACCCAGTATAGTTTCATTCT
1 ATTCTTTCAATACCCAATACAGTTTCATTCT
46278837 TTCAATACAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.21, G:0.03, T:0.48
Consensus pattern (31 bp):
ATTCTTTCAATACCCAATACAGTTTCATTCT
Found at i:46281747 original size:30 final size:31
Alignment explanation
Indices: 46281686--46281748 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 31
46281676 AAACCATGAA
* * *
46281686 AATATTTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTTACAAAAAGAGGCACCAAAATTTT
46281717 AATA-TTTACAAAAAGA-GCAACCAAAATTTT
1 AATATTTTACAAAAAGAGGC-ACCAAAATTTT
46281747 AA
1 AA
46281749 AAATAATTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 2 0.07
30 22 0.79
31 4 0.14
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.32
Consensus pattern (31 bp):
AATATTTTACAAAAAGAGGCACCAAAATTTT
Found at i:46286119 original size:20 final size:18
Alignment explanation
Indices: 46286071--46286119 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 18
46286061 TACAAAAAAT
*
46286071 AAAATAAAAATATATTTG
1 AAAATAAAAATAAATTTG
46286089 AAAATGCAAAAATAAATTTAAG
1 AAAAT--AAAAATAAATTT--G
46286111 AAAATAAAA
1 AAAATAAAA
46286120 TATTTTTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 5 0.19
20 15 0.58
22 6 0.23
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.24
Consensus pattern (18 bp):
AAAATAAAAATAAATTTG
Found at i:46289760 original size:101 final size:100
Alignment explanation
Indices: 46289585--46289807 Score: 311
Period size: 101 Copynumber: 2.2 Consensus size: 100
46289575 AATTGACGGA
* * * * *
46289585 TAAGACCATGGTTGGACCATGGAAATGTTTATATGTAAGACCATAGTTGGGCTATGGCATTTTAA
1 TAAGACCATGGTTGGGCCAT-GAAATATTTATAAGTAAAACCATAGTTGGGCTATGGCATTCTAA
*
46289650 TGAAAAGACCATAACTAGGTTATAGCACTTTGAACG
65 TGAAAAGACCATAACTAGGTTATAGCACTATGAACG
* *
46289686 TAAGACCGTGGTTGGGCCATGATAGTATTTATAAGTAAAACCATAGTTGGGCTATGGCATTCTAA
1 TAAGACCATGGTTGGGCCATGA-AATATTTATAAGTAAAACCATAGTTGGGCTATGGCATTCTAA
* * * *
46289751 TGATAAGACCATAACTGGGTTATGGCACTATGAATG
65 TGAAAAGACCATAACTAGGTTATAGCACTATGAACG
*
46289787 TAAGACCATGGTTGGGTCATG
1 TAAGACCATGGTTGGGCCATG
46289808 GCAATGCATG
Statistics
Matches: 107, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
100 2 0.02
101 105 0.98
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (100 bp):
TAAGACCATGGTTGGGCCATGAAATATTTATAAGTAAAACCATAGTTGGGCTATGGCATTCTAAT
GAAAAGACCATAACTAGGTTATAGCACTATGAACG
Found at i:46289803 original size:33 final size:33
Alignment explanation
Indices: 46289617--46289844 Score: 115
Period size: 33 Copynumber: 6.8 Consensus size: 33
46289607 AAATGTTTAT
* *
46289617 ATGTAAGACCATAGTTGGGCTATGGCA-TTTTA
1 ATGTAAGACCATAGTTGGGCTATGGCACTATGA
* ** * * * *
46289649 ATGAAAAGACCATAACTAGGTTATAGCACTTTGA
1 ATG-TAAGACCATAGTTGGGCTATGGCACTATGA
* * * * ** * *
46289683 ACGTAAGACCGTGGTTGGGCCATGATAGTATTTA
1 ATGTAAGACCATAGTTGGGCTATGGCACTA-TGA
* * * *
46289717 TAAGTAAAACCATAGTTGGGCTATGGCATTCT-A
1 -ATGTAAGACCATAGTTGGGCTATGGCACTATGA
** *
46289750 ATGATAAGACCATAACTGGGTTATGGCACTATGA
1 ATG-TAAGACCATAGTTGGGCTATGGCACTATGA
*
46289784 ATGTAAGACCATGGTTGGG-TCATGGCA--ATGCA
1 ATGTAAGACCATAGTTGGGCT-ATGGCACTATG-A
* *
46289816 TGTGTAAGACCATAGTTGGACTATGGCAC
1 -ATGTAAGACCATAGTTGGGCTATGGCAC
46289845 AAAGAAAATG
Statistics
Matches: 141, Mismatches: 44, Indels: 20
0.69 0.21 0.10
Matches are distributed among these distances:
31 3 0.02
32 7 0.05
33 96 0.68
34 14 0.10
35 21 0.15
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.29
Consensus pattern (33 bp):
ATGTAAGACCATAGTTGGGCTATGGCACTATGA
Found at i:46291938 original size:7 final size:7
Alignment explanation
Indices: 46291926--46291950 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
46291916 TATTCGATGT
46291926 TAAACCC
1 TAAACCC
46291933 TAAACCC
1 TAAACCC
46291940 TAAACCC
1 TAAACCC
46291947 TAAA
1 TAAA
46291951 TCTAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.16
Consensus pattern (7 bp):
TAAACCC
Found at i:46300570 original size:51 final size:50
Alignment explanation
Indices: 46300512--46300647 Score: 166
Period size: 50 Copynumber: 2.7 Consensus size: 50
46300502 CCAGTTCACA
*
46300512 TAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCA-TCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACC--TATCATTCCGATACACG
* * * * *
46300563 TAGTAGCCTGCACATAGTACTACACATGCGGCCTATCATTCTGGTACATG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCTATCATTCCGATACACG
* * *
46300613 AAGTAGCCAGCACATAGTACTACACACGTGACCTA
1 TAGTAGCCTGCACATAGTACTACACATGTGACCTA
46300648 GCAACTTCAC
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
49 4 0.05
50 38 0.52
51 31 0.42
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCTATCATTCCGATACACG
Found at i:46301434 original size:7 final size:7
Alignment explanation
Indices: 46301421--46301469 Score: 89
Period size: 7 Copynumber: 7.0 Consensus size: 7
46301411 ACCAATGGTC
46301421 TAAATTT
1 TAAATTT
*
46301428 AAAATTT
1 TAAATTT
46301435 TAAATTT
1 TAAATTT
46301442 TAAATTT
1 TAAATTT
46301449 TAAATTT
1 TAAATTT
46301456 TAAATTT
1 TAAATTT
46301463 TAAATTT
1 TAAATTT
46301470 CATAACAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
TAAATTT
Found at i:46303615 original size:26 final size:25
Alignment explanation
Indices: 46303523--46303674 Score: 100
Period size: 26 Copynumber: 6.0 Consensus size: 25
46303513 TTATTTAAAA
46303523 AAATTCTCTTT-TATCATTATTTATTT
1 AAATTCT-TTTATAT-ATTATTTATTT
* *
46303549 TAAGT-TTTTATATATTATTTATTTT
1 AAATTCTTTTATATATTATTTA-TTT
* * * *
46303574 AAACTGTTTCACATATTATTTATTT
1 AAATTCTTTTATATATTATTTATTT
*
46303599 AAATTTCTTTTATATATTATTTAATGT
1 AAA-TTCTTTTATATATTATTT-ATTT
**
46303626 AAA--CCATTATATATATATATT-TTT
1 AAATTCTTTTATATAT-TAT-TTATTT
* *
46303650 AAATTGTTTTATATGTTATTT-TTT
1 AAATTCTTTTATATATTATTTATTT
46303674 A
1 A
46303675 TATTATTTAT
Statistics
Matches: 99, Mismatches: 18, Indels: 20
0.72 0.13 0.15
Matches are distributed among these distances:
24 31 0.31
25 22 0.22
26 40 0.40
27 6 0.06
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (25 bp):
AAATTCTTTTATATATTATTTATTT
Found at i:46303713 original size:37 final size:39
Alignment explanation
Indices: 46303632--46303715 Score: 136
Period size: 37 Copynumber: 2.2 Consensus size: 39
46303622 ATGTAAACCA
46303632 TTATATATATATATTTTTAAATTGTTTTATATGTTATTTT
1 TTATAT-TATATATTTTTAAATTGTTTTATATGTTATTTT
*
46303672 TTATATTATTTA-TTTTAAATTGTTTTAT-TGTTATTTT
1 TTATATTATATATTTTTAAATTGTTTTATATGTTATTTT
46303709 TTATATT
1 TTATATT
46303716 CTGTTTATTT
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
37 16 0.37
38 16 0.37
39 5 0.12
40 6 0.14
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (39 bp):
TTATATTATATATTTTTAAATTGTTTTATATGTTATTTT
Found at i:46303745 original size:39 final size:38
Alignment explanation
Indices: 46303654--46303747 Score: 104
Period size: 39 Copynumber: 2.5 Consensus size: 38
46303644 ATTTTTAAAT
* *
46303654 TGTTTTA-TATGTTATTTTTTATATTATTTATTTTAAAT
1 TGTTTTATTAT-TTATTTTTTATATTATTTATTTGAAAC
* *
46303692 TGTTTTATT-GTTATTTTTTATATTCTGTTTATTTGAAAC
1 TGTTTTATTATTTATTTTTTATA-T-TATTTATTTGAAAC
46303731 T-TTTTATTATTTATTTT
1 TGTTTTATTATTTATTTT
46303748 GAATTGTTCT
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
37 12 0.26
38 15 0.32
39 20 0.43
ACGTcount: A:0.22, C:0.02, G:0.06, T:0.69
Consensus pattern (38 bp):
TGTTTTATTATTTATTTTTTATATTATTTATTTGAAAC
Found at i:46314184 original size:40 final size:40
Alignment explanation
Indices: 46314121--46314205 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
46314111 TAGCTTGAAT
* * **
46314121 ATCAACACTTCAATATTTAATATGTAAGGAATTGTCAAAA
1 ATCAACACTTCAATATTTAATATGCAAGAAATTAACAAAA
*
46314161 ATCAACATTTCAATAATTT-ATATGCAAGAAATTAACAAAA
1 ATCAACACTTCAAT-ATTTAATATGCAAGAAATTAACAAAA
46314201 ATCAA
1 ATCAA
46314206 TCTTACAACA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 35 0.90
41 4 0.10
ACGTcount: A:0.49, C:0.13, G:0.07, T:0.31
Consensus pattern (40 bp):
ATCAACACTTCAATATTTAATATGCAAGAAATTAACAAAA
Found at i:46314386 original size:86 final size:86
Alignment explanation
Indices: 46314226--46314558 Score: 386
Period size: 86 Copynumber: 3.9 Consensus size: 86
46314216 GTTTATGTGA
* ** ** * *
46314226 AACAAATTAGCAAAAATCAACT-ATTCATAGTTCATATATTTACCGGCAAT-AGGGCTAAATCTT
1 AACAAATTAGCAAAAATCAA-TGGTTCA-AGTTCATGCATTTACCAACAATCA-GACTAAATTTT
* *
46314289 CAAT-TTCTATAACGATTTATATGC
63 CAATATT-TATAACAACTTATATGC
* * * *
46314313 AACAAATTAGCAAAAATCAATGGTTCAAGTTCATGTATTTACGAAAAATCAGACTAATTTTTCAA
1 AACAAATTAGCAAAAATCAATGGTTCAAGTTCATGCATTTACCAACAATCAGACTAAATTTTCAA
46314378 TATTTATAACAACTTATATGC
66 TATTTATAACAACTTATATGC
* * *
46314399 AACAAATTAGCAAAAATAAATGGTTCAAGTTCATGCATTTACCAATAACCAGACTAAATTTTCAA
1 AACAAATTAGCAAAAATCAATGGTTCAAGTTCATGCATTTACCAACAATCAGACTAAATTTTCAA
* *
46314464 TTTTTATAACAACTTATGTGC
66 TATTTATAACAACTTATATGC
* ** * *
46314485 AACAAATTAGAAAAAATCAACAGTTCAAGTTCATGCATTCACCAACAATCAGACCAAATTTTCAA
1 AACAAATTAGCAAAAATCAATGGTTCAAGTTCATGCATTTACCAACAATCAGACTAAATTTTCAA
46314550 -ATTTTATAA
66 TA-TTTATAA
46314559 AGTAGAAGGA
Statistics
Matches: 214, Mismatches: 28, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
86 187 0.87
87 27 0.13
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.32
Consensus pattern (86 bp):
AACAAATTAGCAAAAATCAATGGTTCAAGTTCATGCATTTACCAACAATCAGACTAAATTTTCAA
TATTTATAACAACTTATATGC
Found at i:46316418 original size:15 final size:14
Alignment explanation
Indices: 46316392--46316429 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
46316382 AACCCTTAAA
46316392 CCATAAACCATAAT
1 CCATAAACCATAAT
*
46316406 CCCTAAACTCATAAT
1 CCATAAAC-CATAAT
46316421 CCATAAACC
1 CCATAAACC
46316430 TTAAGATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (14 bp):
CCATAAACCATAAT
Found at i:46316953 original size:40 final size:40
Alignment explanation
Indices: 46316857--46316953 Score: 106
Period size: 40 Copynumber: 2.5 Consensus size: 40
46316847 AAAAATGCTG
* * * *
46316857 CTAATGCTC-ATTTTCAGCGGCGTGTTCCAAAAATCGCCG
1 CTAATGCTCGATTTTTAGCGACGTGTTCCAAAAAGCGCCA
* * * * *
46316896 CAAATACTCGATCTTTAGCGACGTTTTCCATAAAGCGCCA
1 CTAATGCTCGATTTTTAGCGACGTGTTCCAAAAAGCGCCA
46316936 CTAATGCTCGATTTTTAG
1 CTAATGCTCGATTTTTAG
46316954 AAAAAACCTA
Statistics
Matches: 45, Mismatches: 12, Indels: 1
0.78 0.21 0.02
Matches are distributed among these distances:
39 7 0.16
40 38 0.84
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (40 bp):
CTAATGCTCGATTTTTAGCGACGTGTTCCAAAAAGCGCCA
Found at i:46317042 original size:15 final size:18
Alignment explanation
Indices: 46317012--46317049 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
46317002 ATAAGTGTTT
46317012 TTTTTCCATCAACATA-C
1 TTTTTCCATCAACATATC
46317029 TTTTT-CAT-AACATATC
1 TTTTTCCATCAACATATC
46317045 TTTTT
1 TTTTT
46317050 GAAGAGTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 6 0.30
16 9 0.45
17 5 0.25
ACGTcount: A:0.26, C:0.21, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTTTCCATCAACATATC
Found at i:46321087 original size:38 final size:38
Alignment explanation
Indices: 46321044--46321119 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
46321034 AAAACGTATA
46321044 GTTAAATCGATTTGGTTCAA-TTTAATTACTAGTTATGT
1 GTTAAATCGATTTGGTT-AAGTTTAATTACTAGTTATGT
46321082 GTTAAATCGATTTGGTTAAGTTTAATTACTAGTTATGT
1 GTTAAATCGATTTGGTTAAGTTTAATTACTAGTTATGT
46321120 ACTATGTGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
37 2 0.05
38 35 0.95
ACGTcount: A:0.29, C:0.07, G:0.17, T:0.47
Consensus pattern (38 bp):
GTTAAATCGATTTGGTTAAGTTTAATTACTAGTTATGT
Found at i:46322986 original size:117 final size:117
Alignment explanation
Indices: 46322780--46323015 Score: 445
Period size: 117 Copynumber: 2.0 Consensus size: 117
46322770 TGACCTTGCG
*
46322780 AACAATATCCTGCACTTGAACAATAGCATTTGGATGTACATGCTGATTTCGAGCATGCCAAATAT
1 AACAATATCCTGCACTTGAACAATAGCATTTGGATGTACATGCTGATTCCGAGCATGCCAAATAT
* *
46322845 ACCAAAGTGCACACACAATTTGCCTAAAAACAGTAGGCTTGGAGACAACCAA
66 ACCAAAGTGCACACACAATTTGCCTAAAAACAGTAGGCTTAGAAACAACCAA
46322897 AACAATATCCTGCACTTGAACAATAGCATTTGGATGTACATGCTGATTCCGAGCATGCCAAATAT
1 AACAATATCCTGCACTTGAACAATAGCATTTGGATGTACATGCTGATTCCGAGCATGCCAAATAT
46322962 ACCAAAGTGCACACACAATTTGCCTAAAAACAGTAGGCTTAGAAACAACCAA
66 ACCAAAGTGCACACACAATTTGCCTAAAAACAGTAGGCTTAGAAACAACCAA
46323014 AA
1 AA
46323016 GAAAAAAAAA
Statistics
Matches: 116, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
117 116 1.00
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.22
Consensus pattern (117 bp):
AACAATATCCTGCACTTGAACAATAGCATTTGGATGTACATGCTGATTCCGAGCATGCCAAATAT
ACCAAAGTGCACACACAATTTGCCTAAAAACAGTAGGCTTAGAAACAACCAA
Found at i:46325441 original size:72 final size:72
Alignment explanation
Indices: 46325343--46325491 Score: 196
Period size: 72 Copynumber: 2.1 Consensus size: 72
46325333 CAAATGTTTT
* * *
46325343 TTTTTTCACATATATTTGGGTATGGTA-ACTTCTAATATTGA-AAAATCAAATAATCATTT-CAA
1 TTTTTTCACATACATTTGGGTATGGTAGA-TTCTAATA-TCATAAAATCAAATAATCATTTAAAA
46325405 ATATCATTA
64 ATATCATTA
* * *
46325414 TTTTTTCACCTACATTGTGGGTTTGGTAGATTCTAATATCATAAAATCAAATAATTATTTAAAAA
1 TTTTTTCACATACATT-TGGGTATGGTAGATTCTAATATCATAAAATCAAATAATCATTTAAAAA
46325479 TATCATTA
65 TATCATTA
46325487 TTTTT
1 TTTTT
46325492 ATATGTGAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
71 16 0.24
72 35 0.51
73 17 0.25
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.44
Consensus pattern (72 bp):
TTTTTTCACATACATTTGGGTATGGTAGATTCTAATATCATAAAATCAAATAATCATTTAAAAAT
ATCATTA
Found at i:46327168 original size:4 final size:4
Alignment explanation
Indices: 46327159--46327189 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
46327149 TTCCATTTAT
46327159 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
46327190 TGTTTGTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:46328243 original size:2 final size:2
Alignment explanation
Indices: 46328236--46328269 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
46328226 GTTGAGTCTG
46328236 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46328270 GGTAAATTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:46333632 original size:21 final size:21
Alignment explanation
Indices: 46333606--46333646 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
46333596 ATCTGCTCAA
* *
46333606 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
46333627 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
46333647 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:46336397 original size:31 final size:31
Alignment explanation
Indices: 46336340--46336398 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
46336330 TAGTTGAGGT
*
46336340 TCAAGGACCAAACAATAAATAGCCCATTATC
1 TCAAGGACCAAACAAAAAATAGCCCATTATC
*
46336371 TCAAGGACCAAA-AAAAAATTATCCCATT
1 TCAAGGACCAAACAAAAAA-TAGCCCATT
46336399 GCCACTTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 5 0.20
31 20 0.80
ACGTcount: A:0.47, C:0.24, G:0.08, T:0.20
Consensus pattern (31 bp):
TCAAGGACCAAACAAAAAATAGCCCATTATC
Found at i:46338418 original size:21 final size:21
Alignment explanation
Indices: 46338392--46338432 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
46338382 ATCTGCTCAA
* *
46338392 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
46338413 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
46338433 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:46344694 original size:127 final size:127
Alignment explanation
Indices: 46344381--46345079 Score: 1116
Period size: 127 Copynumber: 5.5 Consensus size: 127
46344371 ATAAAAATCA
* * * * * * *
46344381 AAGCAGGATGCTTTATTAGAAGAATTTCTGAAGTTGCGCCCACGTGTACGCGTTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
* *
46344446 AGGTCCTGGAAGAAATAATTTTGACTTGACGTTTCTGAGCAAATAGTAT-AAAAAACGCTTC
66 AGGTCCTGGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTC
* *
46344507 AAGCAAGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTAGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
**
46344572 AATTCCTGGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTC
66 AGGTCCTGGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTC
* * * *
46344634 AAGTAGGATACTTTATGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGTTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
* *
46344699 AGGTTCTGGAAGAAATAATTTCGACTTAACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTC
66 AGGTCCTGGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTC
46344761 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
* *
46344826 AGGTCCTGGAAGAAATAACTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAAATGCTTC
66 AGGTCCTGGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTC
* * *
46344888 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCATGGACGCCCTTTTGCTACAAT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
* *
46344953 AGGTCCTGGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAG--TATAAAAACGCTTC
66 AGGTCCTGGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTC
* * *
46345013 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCACTTTTGCTACCGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
46345078 AG
66 AG
46345080 CATGTTTGGA
Statistics
Matches: 529, Mismatches: 43, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
125 74 0.14
126 101 0.19
127 354 0.67
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (127 bp):
AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
AGGTCCTGGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTC
Done.