Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 148 of 226
Found at i:46348258 original size:28 final size:27
Alignment explanation
Indices: 46348209--46348268 Score: 93
Period size: 28 Copynumber: 2.2 Consensus size: 27
46348199 AAGGTTAGAA
*
46348209 GGTTTTTAAGTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAAGGTAAGGGTTTAG
*
46348236 GGTTTTTAAGTTAAGGGTCAGGGTTTAG
1 GGTTTTTAAGTTAA-GGTAAGGGTTTAG
46348264 GGTTT
1 GGTTT
46348269 AGGGTTTGTC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 14 0.47
28 16 0.53
ACGTcount: A:0.22, C:0.02, G:0.33, T:0.43
Consensus pattern (27 bp):
GGTTTTTAAGTTAAGGTAAGGGTTTAG
Found at i:46348260 original size:21 final size:22
Alignment explanation
Indices: 46348219--46348261 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
46348209 GGTTTTTAAG
*
46348219 TTAAGTTAAGGGTTTAGGGTTT
1 TTAAGTTAAGGGTTCAGGGTTT
46348241 TTAAGTTAAGGG-TCAGGGTTT
1 TTAAGTTAAGGGTTCAGGGTTT
46348262 AGGGTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.23, C:0.02, G:0.33, T:0.42
Consensus pattern (22 bp):
TTAAGTTAAGGGTTCAGGGTTT
Found at i:46348826 original size:18 final size:18
Alignment explanation
Indices: 46348800--46348842 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
46348790 GACTCGAAAA
* *
46348800 AGGAAACATATAAGGGTT
1 AGGAAACATAAAAGGGCT
*
46348818 AGGATACATAAAAGGGCT
1 AGGAAACATAAAAGGGCT
46348836 AGGAAAC
1 AGGAAAC
46348843 GCACTTGGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.28, T:0.16
Consensus pattern (18 bp):
AGGAAACATAAAAGGGCT
Found at i:46349713 original size:20 final size:20
Alignment explanation
Indices: 46349676--46349713 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
46349666 ATTATTTCTA
*
46349676 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
46349696 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
46349714 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:46350697 original size:51 final size:51
Alignment explanation
Indices: 46350653--46350752 Score: 173
Period size: 51 Copynumber: 2.0 Consensus size: 51
46350643 AATTATTTAA
46350653 AAATAGGGATTTAAGAGAAATTTAAAAGGAAATTGAGAGCAAATTGAGATT
1 AAATAGGGATTTAAGAGAAATTTAAAAGGAAATTGAGAGCAAATTGAGATT
* * *
46350704 AAATATGGATTTAAGAGAAATTTAGAAGGAATTTGAGAGCAAATTGAGA
1 AAATAGGGATTTAAGAGAAATTTAAAAGGAAATTGAGAGCAAATTGAGA
46350753 GGAAATTTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.48, C:0.02, G:0.24, T:0.26
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAAAAGGAAATTGAGAGCAAATTGAGATT
Found at i:46350726 original size:11 final size:11
Alignment explanation
Indices: 46350712--46350771 Score: 52
Period size: 11 Copynumber: 5.3 Consensus size: 11
46350702 TTAAATATGG
*
46350712 ATTTAAGAGAA
1 ATTTGAGAGAA
*
46350723 ATTT-AGAAGGA
1 ATTTGAG-AGAA
46350734 ATTTGAGAGCAA
1 ATTTGAGAG-AA
46350746 A-TTGAGAGGAA
1 ATTTGAGA-GAA
46350757 ATTTGAGAGAGA
1 ATTTGAGAGA-A
46350769 ATT
1 ATT
46350772 AGTTTGTGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
10 2 0.05
11 24 0.59
12 15 0.37
ACGTcount: A:0.45, C:0.02, G:0.27, T:0.27
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:46350759 original size:23 final size:22
Alignment explanation
Indices: 46350712--46350771 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 22
46350702 TTAAATATGG
* *
46350712 ATTTAAGAGAAATTTAGAAGGA
1 ATTTGAGAGAAATTGAGAAGGA
46350734 ATTTGAGAGCAAATTGAG-AGGAA
1 ATTTGAGAG-AAATTGAGAAGG-A
46350757 ATTTGAGAGAGAATT
1 ATTTGAGAGA-AATT
46350772 AGTTTGTGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 12 0.36
23 21 0.64
ACGTcount: A:0.45, C:0.02, G:0.27, T:0.27
Consensus pattern (22 bp):
ATTTGAGAGAAATTGAGAAGGA
Found at i:46350762 original size:12 final size:12
Alignment explanation
Indices: 46350720--46350765 Score: 53
Period size: 11 Copynumber: 4.0 Consensus size: 12
46350710 GGATTTAAGA
46350720 GAAATTT-AGAAG
1 GAAATTTGAG-AG
46350732 G-AATTTGAGAG
1 GAAATTTGAGAG
*
46350743 CAAA-TTGAGAG
1 GAAATTTGAGAG
46350754 GAAATTTGAGAG
1 GAAATTTGAGAG
46350766 AGAATTAGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
11 17 0.59
12 12 0.41
ACGTcount: A:0.43, C:0.02, G:0.30, T:0.24
Consensus pattern (12 bp):
GAAATTTGAGAG
Found at i:46354153 original size:23 final size:23
Alignment explanation
Indices: 46354069--46354154 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
46354059 CCTGATCAGT
*
46354069 ATACGACACA-TAAGTGCCTGAA
1 ATACGACACACGAAGTGCCTGAA
*
46354091 AT--GACACACGAGGTGCCTG--
1 ATACGACACACGAAGTGCCTGAA
* *
46354110 ATACGACACACGAGGTACCTGAA
1 ATACGACACACGAAGTGCCTGAA
**
46354133 ATACGACACATAAAGTGCCTGA
1 ATACGACACACGAAGTGCCTGA
46354155 TCAGCAAGGC
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
19 2 0.04
20 6 0.12
21 24 0.46
22 2 0.04
23 18 0.35
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.16
Consensus pattern (23 bp):
ATACGACACACGAAGTGCCTGAA
Found at i:46355158 original size:6 final size:6
Alignment explanation
Indices: 46355147--46355183 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
46355137 CAAACCCTAG
*
46355147 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTA TTTTTC T
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC T
46355184 CGTTTCTCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTC
Found at i:46358986 original size:30 final size:30
Alignment explanation
Indices: 46358952--46359032 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
46358942 TGGCACTTGG
* *
46358952 GCGTGTGTCCAGCCCGTGTGGCTTACACAT
1 GCGTGTGTCCAGCCCATGTGGCTCACACAT
* *
46358982 GCGTGTGTCTAGCCCATGTGGCTCACACAG
1 GCGTGTGTCCAGCCCATGTGGCTCACACAT
* * *
46359012 GCATGTATCCAACCCATGTGG
1 GCGTGTGTCCAGCCCATGTGG
46359033 AAATGCTCAG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.17, C:0.30, G:0.28, T:0.25
Consensus pattern (30 bp):
GCGTGTGTCCAGCCCATGTGGCTCACACAT
Found at i:46359989 original size:17 final size:17
Alignment explanation
Indices: 46359967--46360002 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
46359957 AGTATTATAA
46359967 TATTTATCATAA-AATTT
1 TATTTATCA-AATAATTT
46359984 TATTTATCAAATAATTT
1 TATTTATCAAATAATTT
46360001 TA
1 TA
46360003 AAAACAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 2 0.11
17 16 0.89
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.53
Consensus pattern (17 bp):
TATTTATCAAATAATTT
Found at i:46366404 original size:21 final size:22
Alignment explanation
Indices: 46366351--46366404 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
46366341 CTTAATTAAG
46366351 TAAATTAAGATTAATTAAAACTA
1 TAAA-TAAGATTAATTAAAACTA
* *
46366374 -AAACATGATTAATTAAAA-TA
1 TAAATAAGATTAATTAAAACTA
46366394 TAAATAAGATT
1 TAAATAAGATT
46366405 TATGAAATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 2 0.08
21 21 0.81
22 3 0.12
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (22 bp):
TAAATAAGATTAATTAAAACTA
Found at i:46367169 original size:19 final size:19
Alignment explanation
Indices: 46367145--46367184 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
46367135 TAAATGGCTC
46367145 TTCAATTTATTTTTTCATT
1 TTCAATTTATTTTTTCATT
*
46367164 TTCAATTTGTTTTTTCATT
1 TTCAATTTATTTTTTCATT
46367183 TT
1 TT
46367185 GCTTCAGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.17, C:0.10, G:0.03, T:0.70
Consensus pattern (19 bp):
TTCAATTTATTTTTTCATT
Found at i:46369936 original size:13 final size:13
Alignment explanation
Indices: 46369920--46369946 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
46369910 ACTTCTCAAA
46369920 AGCATTTTTCCAC
1 AGCATTTTTCCAC
46369933 AGCATTTTTCCAC
1 AGCATTTTTCCAC
46369946 A
1 A
46369947 ACACTTTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.30, G:0.07, T:0.37
Consensus pattern (13 bp):
AGCATTTTTCCAC
Found at i:46379532 original size:54 final size:54
Alignment explanation
Indices: 46379425--46379656 Score: 227
Period size: 54 Copynumber: 4.1 Consensus size: 54
46379415 AGTATCATAT
* *
46379425 ATTATGATTTGAGTAAATTCATATAA-AATATTAATTATTAAAAATTTTATTAA
1 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
46379478 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
* * * * * * * *
46379532 ATTATATATTTTAATTATAATAT-ATTTAATAATAATT-ATGTTAATTTATATTTTATAGTATCA
1 ATTAT-GA-TTTGAGTA-AAT-TCATATAAGAAT-ATTGA--TT-ATTAAGAATTT-TA-T-T-A
46379595 TA
54 -A
46379597 TATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 -ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
46379652 ATTAT
1 ATTAT
46379657 ATATTTTAAT
Statistics
Matches: 144, Mismatches: 18, Indels: 33
0.74 0.09 0.17
Matches are distributed among these distances:
53 26 0.18
54 35 0.24
55 2 0.01
56 7 0.05
57 13 0.09
58 5 0.03
59 4 0.03
60 16 0.11
61 4 0.03
62 5 0.03
63 13 0.09
64 7 0.05
65 2 0.01
66 5 0.03
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (54 bp):
ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
Found at i:46379561 original size:15 final size:15
Alignment explanation
Indices: 46379526--46379577 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
46379516 TTAAGAATTT
*
46379526 TATTAAATTAT-ATA
1 TATTTAATTATAATA
46379540 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
46379554 TATTTAATAATAAT-
1 TATTTAATTATAATA
46379568 TATGTTAATT
1 TAT-TTAATT
46379578 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:46379605 original size:120 final size:120
Alignment explanation
Indices: 46379478--46379693 Score: 432
Period size: 120 Copynumber: 1.8 Consensus size: 120
46379468 ATTTTATTAA
46379478 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTT
1 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTT
46379543 TAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATAT
66 TAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATAT
46379598 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTT
1 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTT
46379663 TAATTATAATATATTTAATAATAATTATGTT
66 TAATTATAATATATTTAATAATAATTATGTT
46379694 TAAATATGAT
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 96 1.00
ACGTcount: A:0.42, C:0.01, G:0.07, T:0.50
Consensus pattern (120 bp):
ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTT
TAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATAT
Found at i:46379676 original size:16 final size:16
Alignment explanation
Indices: 46379655--46379696 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
46379645 TTATTAAATT
*
46379655 ATATATTTTAATTATA
1 ATATATTTTAATAATA
46379671 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
46379686 AT-TATGTTTAA
1 ATATAT-TTTAA
46379697 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:46379681 original size:15 final size:15
Alignment explanation
Indices: 46379646--46379687 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
46379636 TTAAGAATTT
*
46379646 TATTAAATTAT-ATA
1 TATTTAATTATAATA
46379660 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
46379674 TATTTAATAATAAT
1 TATTTAATTATAAT
46379688 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:46379920 original size:45 final size:41
Alignment explanation
Indices: 46379822--46379931 Score: 109
Period size: 45 Copynumber: 2.6 Consensus size: 41
46379812 TTTTCCATTA
46379822 TGCTATTACACCTCTATTCCATT-C-AACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACAAACCAAACACAAGAT
* * *
46379861 TACTATTACGCCTCTATTCCATTACATTTAACCAAACA-ATTGATT
1 TGCTATTACACCTCTATTCCATTACA---AACCAAACACA-AGA-T
* *
46379906 TGCTATTACACCTCTAATCCAATACA
1 TGCTATTACACCTCTATTCCATTACA
46379932 CCTCTAATCC
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
39 21 0.37
40 1 0.02
43 1 0.02
44 11 0.19
45 23 0.40
ACGTcount: A:0.35, C:0.28, G:0.05, T:0.33
Consensus pattern (41 bp):
TGCTATTACACCTCTATTCCATTACAAACCAAACACAAGAT
Found at i:46379933 original size:16 final size:16
Alignment explanation
Indices: 46379912--46379947 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
46379902 GATTTGCTAT
46379912 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
46379928 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
46379944 TACA
1 TACA
46379948 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:46380151 original size:16 final size:17
Alignment explanation
Indices: 46380132--46380163 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
46380122 TGAACATTAA
46380132 AATCAAAT-TCAAATAC
1 AATCAAATATCAAATAC
46380148 AATCAAATATCAAATA
1 AATCAAATATCAAATA
46380164 GGAAAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.59, C:0.16, G:0.00, T:0.25
Consensus pattern (17 bp):
AATCAAATATCAAATAC
Found at i:46400372 original size:22 final size:22
Alignment explanation
Indices: 46400342--46400388 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
46400332 ACATTAATAT
*
46400342 AACAGTAGGCATCAAAGTGCAA
1 AACAATAGGCATCAAAGTGCAA
**
46400364 AACAATAGGCATTGAAGTGCAA
1 AACAATAGGCATCAAAGTGCAA
46400386 AAC
1 AAC
46400389 GATAAGCACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.15
Consensus pattern (22 bp):
AACAATAGGCATCAAAGTGCAA
Found at i:46400402 original size:22 final size:22
Alignment explanation
Indices: 46400356--46400417 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
46400346 GTAGGCATCA
* * **
46400356 AAGTGCAAAACAATAGGCATTG
1 AAGTGCAAAACGATAAGCACCG
46400378 AAGTGCAAAACGATAAGCACCG
1 AAGTGCAAAACGATAAGCACCG
* *
46400400 AAGTGCGAAATGATAAGC
1 AAGTGCAAAACGATAAGC
46400418 GCTAAAGCGC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.45, C:0.16, G:0.24, T:0.15
Consensus pattern (22 bp):
AAGTGCAAAACGATAAGCACCG
Found at i:46406665 original size:20 final size:20
Alignment explanation
Indices: 46406625--46406665 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
46406615 CAATGCTATA
*
46406625 TATTATAAAAATAATATACT
1 TATTATAAAAAAAATATACT
46406645 TATTCATAAAAAAAATA-ACT
1 TATT-ATAAAAAAAATATACT
46406665 T
1 T
46406666 TCAAAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (20 bp):
TATTATAAAAAAAATATACT
Found at i:46407162 original size:31 final size:31
Alignment explanation
Indices: 46407127--46407188 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
46407117 AAAAGAACAA
46407127 GATTGAATCGTGCTAGCATGTTGCATATTTC
1 GATTGAATCGTGCTAGCATGTTGCATATTTC
46407158 GATTGAATCGTGCTAGCATGTTGCATATTTC
1 GATTGAATCGTGCTAGCATGTTGCATATTTC
46407189 ATAACTTCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.39
Consensus pattern (31 bp):
GATTGAATCGTGCTAGCATGTTGCATATTTC
Found at i:46407955 original size:5 final size:5
Alignment explanation
Indices: 46407945--46407980 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
46407935 GGAAAGAAAA
*
46407945 AGAAG AGAAG AGAAG AGAAG AGAAG CGAAG AGAAG A
1 AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG A
46407981 AAACTTTTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.58, C:0.03, G:0.39, T:0.00
Consensus pattern (5 bp):
AGAAG
Found at i:46429159 original size:30 final size:30
Alignment explanation
Indices: 46429103--46429168 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 30
46429093 ATCAAATCAT
* * * *
46429103 TTAAATAAGAATTTGTAAATAGTTTAATGAC
1 TTAAATAAAAATTTGCAAATAATTTAAT-AA
46429134 TTAAATAAAAATTT-CAAATAATTTAATAA
1 TTAAATAAAAATTTGCAAATAATTTAATAA
46429163 TTAAAT
1 TTAAAT
46429169 TGTAATTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 7 0.23
30 11 0.35
31 13 0.42
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (30 bp):
TTAAATAAAAATTTGCAAATAATTTAATAA
Found at i:46438928 original size:30 final size:30
Alignment explanation
Indices: 46438878--46438934 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
46438868 CTGGCAAATG
*
46438878 GCCATGTGGTAGCCCTTGTGG-ATCACACA
1 GCCATGTGCTAGCCCTTGTGGAATCACACA
46438907 GCCATGTGCCTAG-CCTGTGTGGAATCAC
1 GCCATGTG-CTAGCCCT-TGTGGAATCAC
46438935 CCAACCTGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 11 0.46
30 8 0.33
31 5 0.21
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (30 bp):
GCCATGTGCTAGCCCTTGTGGAATCACACA
Found at i:46444721 original size:67 final size:69
Alignment explanation
Indices: 46444594--46444731 Score: 156
Period size: 68 Copynumber: 2.0 Consensus size: 69
46444584 CTTTATCTGG
* ** **
46444594 TTTTTTAGGTACAACTATTGTGATATTTGTTGGTTTATTTTTGTGAAGTTTCAACTTC-TTTCAT
1 TTTTTTAGGTACAACTATTATGATATTTGTTGGTTTATTTTTGCAAAACTTCAACTTCTTTTCAT
*
46444658 TTTA
66 GTTA
* * * *
46444662 TTTTTT-GGTACAACTATTATGTTGTTTGTTAGTTTTGTTTTTGCAAAACTTCAAC-TCTTTTCA
1 TTTTTTAGGTACAACTATTATGATATTTGTT-GGTTTATTTTTGCAAAACTTCAACTTCTTTTCA
46444725 TGTTA
65 TGTTA
46444730 TT
1 TT
46444732 GTGGGTGCAA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
67 23 0.40
68 35 0.60
ACGTcount: A:0.20, C:0.10, G:0.14, T:0.56
Consensus pattern (69 bp):
TTTTTTAGGTACAACTATTATGATATTTGTTGGTTTATTTTTGCAAAACTTCAACTTCTTTTCAT
GTTA
Found at i:46455878 original size:21 final size:20
Alignment explanation
Indices: 46455848--46455897 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
46455838 AATAAATACC
*
46455848 AAAAATTTATTTTAAAAATTA
1 AAAAAATTATTTT-AAAATTA
46455869 AAAAAATTATTTTAAAATTA
1 AAAAAATTATTTTAAAATTA
46455889 AAAAAATTA
1 AAAAAATTA
46455898 AAAAAATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAAAATTATTTTAAAATTA
Found at i:46455900 original size:8 final size:9
Alignment explanation
Indices: 46455861--46455904 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
46455851 AATTTATTTT
46455861 AAAAATTAA
1 AAAAATTAA
*
46455870 AAAAATTATTT
1 AAAAATTA--A
*
46455881 TAAAATTAA
1 AAAAATTAA
46455890 AAAAATTAA
1 AAAAATTAA
46455899 AAAAAT
1 AAAAAT
46455905 ATTTTAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 22 0.76
11 7 0.24
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (9 bp):
AAAAATTAA
Found at i:46455912 original size:42 final size:39
Alignment explanation
Indices: 46455870--46455986 Score: 153
Period size: 42 Copynumber: 2.9 Consensus size: 39
46455860 TAAAAATTAA
46455870 AAAAATTATTTTAAAATTAAAAAAATTAAAAAAATATTTT
1 AAAAA-TATTTTAAAATTAAAAAAATTAAAAAAATATTTT
***
46455910 AAAAATATTTTAAAATTAAAATTTTTTTAAAAAAAGTATTTT
1 AAAAATATTTTAAAATTAAAA--AAATTAAAAAAA-TATTTT
* *
46455952 AAAAGTATTTTAAAATTAAAAAAAATAAAAAAATA
1 AAAAATATTTTAAAATTAAAAAAATTAAAAAAATA
46455987 AAAAAATTTA
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
39 18 0.27
40 13 0.20
41 9 0.14
42 26 0.39
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (39 bp):
AAAAATATTTTAAAATTAAAAAAATTAAAAAAATATTTT
Found at i:46455925 original size:10 final size:11
Alignment explanation
Indices: 46455899--46455924 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
46455889 AAAAAATTAA
46455899 AAAAATATTTT
1 AAAAATATTTT
46455910 AAAAATATTTT
1 AAAAATATTTT
46455921 AAAA
1 AAAA
46455925 TTAAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:46455930 original size:17 final size:17
Alignment explanation
Indices: 46455908--46455941 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
46455898 AAAAAATATT
46455908 TTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAA
* *
46455925 TTAAAATTTTTTTAAAA
1 TTAAAAATATTTTAAAA
46455942 AAAGTATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TTAAAAATATTTTAAAA
Found at i:46455930 original size:29 final size:30
Alignment explanation
Indices: 46455855--46455930 Score: 93
Period size: 29 Copynumber: 2.5 Consensus size: 30
46455845 ACCAAAAATT
46455855 TATTTTAAAAATTAAAAAAATTATTTTAAAA
1 TATTTT-AAAATTAAAAAAATTATTTTAAAA
***
46455886 T-TAAAAAAATTAAAAAAA-TATTTTAAAAA
1 TATTTTAAAATTAAAAAAATTATTTT-AAAA
46455915 TATTTTAAAATTAAAA
1 TATTTTAAAATTAAAA
46455931 TTTTTTTAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
28 6 0.16
29 18 0.49
30 12 0.32
31 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (30 bp):
TATTTTAAAATTAAAAAAATTATTTTAAAA
Found at i:46455955 original size:11 final size:11
Alignment explanation
Indices: 46455941--46455966 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
46455931 TTTTTTTAAA
46455941 AAAAGTATTTT
1 AAAAGTATTTT
46455952 AAAAGTATTTT
1 AAAAGTATTTT
46455963 AAAA
1 AAAA
46455967 TTAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:46468256 original size:29 final size:28
Alignment explanation
Indices: 46468214--46468313 Score: 101
Period size: 29 Copynumber: 3.5 Consensus size: 28
46468204 TCCCAGACCA
* * * * *
46468214 TGTGTCTGATACGGTCCAACACATAGTTG
1 TGTGTCTCACACGGTCTAGCACAT-GTCG
*
46468243 TGTGTCTCACACGGTCTAGCATATGGTCG
1 TGTGTCTCACACGGTCTAGCACAT-GTCG
*
46468272 TGTGTCTCACATGGTCTAGCACATGATCG
1 TGTGTCTCACACGGTCTAGCACATG-TCG
*
46468301 TGTGTCACACACG
1 TGTGTCTCACACG
46468314 ACCTGGCACA
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
28 1 0.02
29 58 0.98
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.30
Consensus pattern (28 bp):
TGTGTCTCACACGGTCTAGCACATGTCG
Found at i:46472278 original size:51 final size:51
Alignment explanation
Indices: 46472202--46472412 Score: 343
Period size: 51 Copynumber: 4.2 Consensus size: 51
46472192 CGGATCACAT
*
46472202 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
* ** * *
46472253 TTATCACTTGTCACTTATCACTGATCAGATATGTACAACTAAAGCTATCAC
1 TTATCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
*
46472304 TTATCACTTGTCACTTATCACTAATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
*
46472355 TTATCACTTGTCACTTATCACTGATCACATAAGTGTAGCTAAA-CTACCAC
1 TTATCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
46472405 TTATCACT
1 TTATCACT
46472413 GATCACATAA
Statistics
Matches: 146, Mismatches: 14, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
50 15 0.10
51 131 0.90
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:46472413 original size:36 final size:37
Alignment explanation
Indices: 46472366--46472449 Score: 143
Period size: 36 Copynumber: 2.3 Consensus size: 37
46472356 TATCACTTGT
46472366 CACTTATCACTGATCACATAAGTGTAGCTAAA-CTAC
1 CACTTATCACTGATCACATAAGTGTAGCTAAAGCTAC
*
46472402 CACTTATCACTGATCACATAAGTGTATCTAAAGCTAC
1 CACTTATCACTGATCACATAAGTGTAGCTAAAGCTAC
*
46472439 CATTTATCACT
1 CACTTATCACT
46472450 TGTCACTTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
36 31 0.69
37 14 0.31
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.31
Consensus pattern (37 bp):
CACTTATCACTGATCACATAAGTGTAGCTAAAGCTAC
Found at i:46472433 original size:87 final size:87
Alignment explanation
Indices: 46472315--46472499 Score: 307
Period size: 87 Copynumber: 2.1 Consensus size: 87
46472305 TATCACTTGT
*
46472315 CACTTATCACTAATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCACTTATCACTGAT
1 CACTTATCACTAATCACATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCACTTATCACTGAT
*
46472380 CACATAAGTGTAGCTAAACTAC
66 CACATAAATGTAGCTAAACTAC
* * *
46472402 CACTTATCACTGATCACATAAGTGTATCTAAAGCTACCATTTATCACTTGTCACTTATCACTGAT
1 CACTTATCACTAATCACATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCACTTATCACTGAT
* *
46472467 TAGATAAATGTAGCTAAACTAC
66 CACATAAATGTAGCTAAACTAC
46472489 CACTTATCACT
1 CACTTATCACT
46472500 TGTCACTGAT
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 91 1.00
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (87 bp):
CACTTATCACTAATCACATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCACTTATCACTGAT
CACATAAATGTAGCTAAACTAC
Found at i:46472504 original size:50 final size:51
Alignment explanation
Indices: 46472402--46472511 Score: 159
Period size: 51 Copynumber: 2.2 Consensus size: 51
46472392 GCTAAACTAC
* * *
46472402 CACTTATCACTGATCACATAAGTGTATCTAAAGCTACCATTTATCACTTGT
1 CACTTATCACTGATCACATAAATGTAGCTAAAGCTACCACTTATCACTTGT
* *
46472453 CACTTATCACTGATTAGATAAATGTAGCTAAA-CTACCACTTATCACTTGT
1 CACTTATCACTGATCACATAAATGTAGCTAAAGCTACCACTTATCACTTGT
*
46472503 CACTGATCA
1 CACTTATCA
46472512 AAAGTACTCA
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
50 25 0.47
51 28 0.53
ACGTcount: A:0.33, C:0.24, G:0.10, T:0.34
Consensus pattern (51 bp):
CACTTATCACTGATCACATAAATGTAGCTAAAGCTACCACTTATCACTTGT
Found at i:46472607 original size:17 final size:17
Alignment explanation
Indices: 46472585--46472617 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
46472575 TATTCTCAAT
46472585 TCATCAATA-AATATATC
1 TCATC-ATACAATATATC
46472602 TCATCATACAATATAT
1 TCATCATACAATATAT
46472618 AATTCATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (17 bp):
TCATCATACAATATATC
Found at i:46476196 original size:15 final size:16
Alignment explanation
Indices: 46476171--46476201 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
46476161 ATGAGTCTCT
46476171 TTTTTTAAAATATTTA
1 TTTTTTAAAATATTTA
46476187 TTTTTT-AAATATTTA
1 TTTTTTAAAATATTTA
46476202 CTACACCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTTTTAAAATATTTA
Found at i:46488438 original size:5 final size:6
Alignment explanation
Indices: 46488423--46488447 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
46488413 AAACAAAATT
46488423 AAAAAG AAAAAG AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG A
46488448 GACAGAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:46495052 original size:29 final size:30
Alignment explanation
Indices: 46495006--46495069 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 30
46494996 GTTTAGCCTT
*
46495006 GGAAGAAAATTTTGAGATTTGGTCAAAAAG
1 GGAAGAAAATTTTAAGATTTGGTCAAAAAG
46495036 GGAA-AAAATTTTAAGATTTGGTCAAAAAG
1 GGAAGAAAATTTTAAGATTTGGTCAAAAAG
46495065 GGAAG
1 GGAAG
46495070 TTGAGTCCTC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 28 0.88
30 4 0.12
ACGTcount: A:0.45, C:0.03, G:0.27, T:0.25
Consensus pattern (30 bp):
GGAAGAAAATTTTAAGATTTGGTCAAAAAG
Found at i:46503768 original size:21 final size:21
Alignment explanation
Indices: 46503712--46503779 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 21
46503702 AATCAATAGT
* *
46503712 TCAAAAACTAACTACGAAAAA
1 TCAAATACTAACTAAGAAAAA
* * * *
46503733 TC-TATAGTCAGTAAGAAAAA
1 TCAAATACTAACTAAGAAAAA
46503753 TCAAATACTAACTAAGAAAAA
1 TCAAATACTAACTAAGAAAAA
46503774 TCAAAT
1 TCAAAT
46503780 TGGTGTGAAA
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
20 14 0.39
21 22 0.61
ACGTcount: A:0.57, C:0.15, G:0.07, T:0.21
Consensus pattern (21 bp):
TCAAATACTAACTAAGAAAAA
Found at i:46506012 original size:18 final size:18
Alignment explanation
Indices: 46505978--46506012 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
46505968 ATAAATAATT
* *
46505978 TTTTTAATATTTTAAAAC
1 TTTTAAATATTTAAAAAC
46505996 TTTTAAATATTTAAAAA
1 TTTTAAATATTTAAAAA
46506013 AATTTAGAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTTAAATATTTAAAAAC
Found at i:46506018 original size:18 final size:19
Alignment explanation
Indices: 46505983--46506033 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
46505973 TAATTTTTTT
* **
46505983 AATATTTTAAAACTTTTA-
1 AATATTTAAAAAAATTTAG
46506001 AATATTTAAAAAAATTTAG
1 AATATTTAAAAAAATTTAG
* *
46506020 AAAATCTAAAAAAA
1 AATATTTAAAAAAA
46506034 AAGTTAGAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 15 0.56
19 12 0.44
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (19 bp):
AATATTTAAAAAAATTTAG
Found at i:46507160 original size:20 final size:19
Alignment explanation
Indices: 46507123--46507161 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
46507113 TATTTACAGC
* *
46507123 TTTTAATATTTTTTTATTT
1 TTTTAATATTTATGTATTT
46507142 TTTTAAATATTTATGTATTT
1 TTTT-AATATTTATGTATTT
46507162 ATATATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (19 bp):
TTTTAATATTTATGTATTT
Found at i:46507804 original size:16 final size:16
Alignment explanation
Indices: 46507783--46507815 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
46507773 TTATATATAT
46507783 ATTTTTA-AAGATTTTA
1 ATTTTTATAA-ATTTTA
46507799 ATTTTTATAAATTTTA
1 ATTTTTATAAATTTTA
46507815 A
1 A
46507816 ATCATATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
ATTTTTATAAATTTTA
Found at i:46509538 original size:2 final size:2
Alignment explanation
Indices: 46509531--46509555 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
46509521 GCCACACTTG
46509531 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
46509556 TAAAAAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:46515637 original size:27 final size:27
Alignment explanation
Indices: 46515607--46515666 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
46515597 AAACCAGTAT
* * * *
46515607 AGTCCGTTGGGATAGTAAACACGGGGA
1 AGTCCGTCGGGACAATAAACACAGGGA
*
46515634 AGTCCATCGGGACAATAAACACAGGGA
1 AGTCCGTCGGGACAATAAACACAGGGA
*
46515661 TGTCCG
1 AGTCCG
46515667 CTAGGACACC
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.32, C:0.20, G:0.32, T:0.17
Consensus pattern (27 bp):
AGTCCGTCGGGACAATAAACACAGGGA
Found at i:46520010 original size:32 final size:28
Alignment explanation
Indices: 46519991--46520061 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
46519981 ATTAATTTAT
46519991 AATTTATTATCTAAAATATTAAAATTGA
1 AATTTATTATCTAAAATATTAAAATTGA
* * *
46520019 AATTTATTATCTAAATTA-TACAATTTA
1 AATTTATTATCTAAAATATTAAAATTGA
*
46520046 AACATTATTATCTAAA
1 AA-TTTATTATCTAAA
46520062 CATTAATTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 9 0.24
28 29 0.76
ACGTcount: A:0.48, C:0.07, G:0.01, T:0.44
Consensus pattern (28 bp):
AATTTATTATCTAAAATATTAAAATTGA
Found at i:46523021 original size:21 final size:21
Alignment explanation
Indices: 46522995--46523035 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
46522985 ATAGTATCCC
46522995 CCATGTG-CAACATGATGAGCT
1 CCATGTGACAA-ATGATGAGCT
*
46523016 CCATGTGACAAATGGTGAGC
1 CCATGTGACAAATGATGAGC
46523036 CCCGTAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (21 bp):
CCATGTGACAAATGATGAGCT
Found at i:46523268 original size:18 final size:18
Alignment explanation
Indices: 46523242--46523302 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
46523232 TGAGGTGGAT
*
46523242 GAGGGTATCCTCCATGAG
1 GAGGATATCCTCCATGAG
*
46523260 GAGGATATCCTGCA-G-G
1 GAGGATATCCTCCATGAG
*
46523276 TG-GG-TATCCGCCATGAG
1 -GAGGATATCCTCCATGAG
46523293 GAGGATATCC
1 GAGGATATCC
46523303 CGCTGGTGGA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
15 7 0.21
16 5 0.15
17 5 0.15
18 17 0.50
ACGTcount: A:0.23, C:0.21, G:0.34, T:0.21
Consensus pattern (18 bp):
GAGGATATCCTCCATGAG
Found at i:46523290 original size:33 final size:33
Alignment explanation
Indices: 46523244--46523311 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
46523234 AGGTGGATGA
* *
46523244 GGGTATCCTCCATGAGGAGGATATCCTGCAGGT
1 GGGTATCCGCCATGAGGAGGATATCCCGCAGGT
*
46523277 GGGTATCCGCCATGAGGAGGATATCCCGCTGGT
1 GGGTATCCGCCATGAGGAGGATATCCCGCAGGT
46523310 GG
1 GG
46523312 AGGATATCCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.19, C:0.22, G:0.37, T:0.22
Consensus pattern (33 bp):
GGGTATCCGCCATGAGGAGGATATCCCGCAGGT
Found at i:46523328 original size:18 final size:18
Alignment explanation
Indices: 46523292--46523329 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
46523282 TCCGCCATGA
* *
46523292 GGAGGATATCCCGCTGGT
1 GGAGGATATCCAGCCGGT
46523310 GGAGGATATCCAGCCGGT
1 GGAGGATATCCAGCCGGT
46523328 GG
1 GG
46523330 GTATCCTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.42, T:0.18
Consensus pattern (18 bp):
GGAGGATATCCAGCCGGT
Found at i:46523349 original size:15 final size:15
Alignment explanation
Indices: 46523331--46523374 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
46523321 AGCCGGTGGG
*
46523331 TATCCTTGTGGGGGA
1 TATCCTTGTGGAGGA
*
46523346 TATCCTTGAGGAGGA
1 TATCCTTGTGGAGGA
46523361 TATCCTTGTGGAGG
1 TATCCTTGTGGAGG
46523375 GTAGGATCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.18, C:0.14, G:0.36, T:0.32
Consensus pattern (15 bp):
TATCCTTGTGGAGGA
Found at i:46533231 original size:51 final size:50
Alignment explanation
Indices: 46533172--46533268 Score: 176
Period size: 51 Copynumber: 1.9 Consensus size: 50
46533162 CAGGAATCGA
46533172 TTTCAAATACTCTTACAAAGGACTAAACTTAGATTTATGAACCATAACAAT
1 TTTCAAATACTCTTACAAAGGACTAAACTTAGA-TTATGAACCATAACAAT
*
46533223 TTTCAAATACTCTTACAAAGGGCTAAACTTAGATTATGAACCATAA
1 TTTCAAATACTCTTACAAAGGACTAAACTTAGATTATGAACCATAA
46533269 AAATCCAATC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
50 13 0.29
51 32 0.71
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (50 bp):
TTTCAAATACTCTTACAAAGGACTAAACTTAGATTATGAACCATAACAAT
Found at i:46558262 original size:13 final size:13
Alignment explanation
Indices: 46558246--46558271 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
46558236 AAATACATAT
46558246 TTTTTAATTTTAA
1 TTTTTAATTTTAA
46558259 TTTTTAATTTTAA
1 TTTTTAATTTTAA
46558272 AATACTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTTAA
Found at i:46560952 original size:18 final size:18
Alignment explanation
Indices: 46560918--46560975 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
46560908 AAGGTTTTCT
46560918 TATTGATGATA-T--CGA
1 TATTGATGATAGTGACGA
*
46560933 TATTGATGATAGTGATGA
1 TATTGATGATAGTGACGA
* *
46560951 TATTGATGCTAGTGACGC
1 TATTGATGATAGTGACGA
46560969 TATTGAT
1 TATTGAT
46560976 CGTGACTTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
15 11 0.31
16 1 0.03
18 24 0.67
ACGTcount: A:0.29, C:0.07, G:0.24, T:0.40
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Found at i:46562928 original size:15 final size:15
Alignment explanation
Indices: 46562908--46562940 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
46562898 ATTAAAATAC
46562908 AAAACC-AAATTTTAT
1 AAAACCAAAATTTT-T
46562923 AAAACCAAAATTTTT
1 AAAACCAAAATTTTT
46562938 AAA
1 AAA
46562941 CACTTATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAACCAAAATTTTT
Found at i:46569394 original size:41 final size:41
Alignment explanation
Indices: 46569337--46569417 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
46569327 TGAAGAATAA
46569337 ATTCAGGGAGTAATAGGTGCGGAACTATCCTAATTTGCATC
1 ATTCAGGGAGTAATAGGTGCGGAACTATCCTAATTTGCATC
46569378 ATTCAGGGAGTAATAGGTGCGGAACTATCCTAATTTGCAT
1 ATTCAGGGAGTAATAGGTGCGGAACTATCCTAATTTGCAT
46569418 TCAAAGTTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (41 bp):
ATTCAGGGAGTAATAGGTGCGGAACTATCCTAATTTGCATC
Found at i:46571465 original size:157 final size:157
Alignment explanation
Indices: 46571179--46571492 Score: 628
Period size: 157 Copynumber: 2.0 Consensus size: 157
46571169 AAATAAGAAA
46571179 TAAACCTATCATTCTGCACAATTATCAGAAGTAAACCGATAAGAACTGGGAAAAGGATATTCTCT
1 TAAACCTATCATTCTGCACAATTATCAGAAGTAAACCGATAAGAACTGGGAAAAGGATATTCTCT
46571244 CTATACTAAGATCCTCAATCAAGCTACTTAAGCAAGGAACCACTTAGTAATAACTCAAGATTCTG
66 CTATACTAAGATCCTCAATCAAGCTACTTAAGCAAGGAACCACTTAGTAATAACTCAAGATTCTG
46571309 TCATCTAGATATCGAGAAACTCATGTC
131 TCATCTAGATATCGAGAAACTCATGTC
46571336 TAAACCTATCATTCTGCACAATTATCAGAAGTAAACCGATAAGAACTGGGAAAAGGATATTCTCT
1 TAAACCTATCATTCTGCACAATTATCAGAAGTAAACCGATAAGAACTGGGAAAAGGATATTCTCT
46571401 CTATACTAAGATCCTCAATCAAGCTACTTAAGCAAGGAACCACTTAGTAATAACTCAAGATTCTG
66 CTATACTAAGATCCTCAATCAAGCTACTTAAGCAAGGAACCACTTAGTAATAACTCAAGATTCTG
46571466 TCATCTAGATATCGAGAAACTCATGTC
131 TCATCTAGATATCGAGAAACTCATGTC
46571493 CACAACTCAA
Statistics
Matches: 157, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
157 157 1.00
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (157 bp):
TAAACCTATCATTCTGCACAATTATCAGAAGTAAACCGATAAGAACTGGGAAAAGGATATTCTCT
CTATACTAAGATCCTCAATCAAGCTACTTAAGCAAGGAACCACTTAGTAATAACTCAAGATTCTG
TCATCTAGATATCGAGAAACTCATGTC
Found at i:46573641 original size:16 final size:17
Alignment explanation
Indices: 46573601--46573642 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
46573591 ATTATCGAAT
46573601 ATTTATAAGGGAAAACTTGG
1 ATTT-TAAGGGAAAAC-T-G
46573621 ATTTTAAGGGAAAAC-G
1 ATTTTAAGGGAAAACTG
46573637 ATTTTA
1 ATTTTA
46573643 TCTTTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 7 0.32
19 11 0.50
20 4 0.18
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.33
Consensus pattern (17 bp):
ATTTTAAGGGAAAACTG
Found at i:46574249 original size:45 final size:46
Alignment explanation
Indices: 46574199--46574294 Score: 158
Period size: 45 Copynumber: 2.1 Consensus size: 46
46574189 TCATTGACCA
*
46574199 AGTATAAATAATTAATAATAAATAATATGTAAATTAGTTAA-ATTT
1 AGTATAAATAATTAATAATAAATAATATGTAAATTAATTAACATTT
*
46574244 AGTATAAATAATTAATAATAAATACTATGTAAATTAATTAACTATTT
1 AGTATAAATAATTAATAATAAATAATATGTAAATTAATTAAC-ATTT
46574291 AGTA
1 AGTA
46574295 GGTCAACATA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
45 39 0.83
47 8 0.17
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (46 bp):
AGTATAAATAATTAATAATAAATAATATGTAAATTAATTAACATTT
Found at i:46576957 original size:28 final size:28
Alignment explanation
Indices: 46576894--46576997 Score: 136
Period size: 28 Copynumber: 3.7 Consensus size: 28
46576884 TGACTTTCGA
*
46576894 CACTAAGTGTGTGAGTTTAATTTGTAAAG
1 CACTAAGTGTGCGAGTTTAA-TTGTAAAG
*
46576923 CACTAAGTGTGCGAGTTTAATGGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* * **
46576951 CACTAAGTGTGCGAGTTTGATTATTGAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
*
46576979 CACTAAGTGTGCGAATTTA
1 CACTAAGTGTGCGAGTTTA
46576998 TTAAATATTT
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 47 0.71
29 19 0.29
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.34
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTGTAAAG
Found at i:46577767 original size:23 final size:23
Alignment explanation
Indices: 46577720--46577778 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
46577710 TTATGCTTAA
* *
46577720 ATGCTGCCC-AATTGATGTATTT
1 ATGCTGCCCAAATTGATATATAT
46577742 ATGCTGCCCAAATTG-TCATATAT
1 ATGCTGCCCAAATTGAT-ATATAT
*
46577765 ATGCTGTCCAAATT
1 ATGCTGCCCAAATT
46577779 TTTGATGTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 10 0.31
23 22 0.69
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37
Consensus pattern (23 bp):
ATGCTGCCCAAATTGATATATAT
Found at i:46577826 original size:23 final size:22
Alignment explanation
Indices: 46577754--46578038 Score: 128
Period size: 23 Copynumber: 12.0 Consensus size: 22
46577744 GCTGCCCAAA
46577754 TTGTCATATATATGCTGTCCAAATTT
1 TTGT-ATATA-ATGCTGT-CAAA-TT
* * *
46577780 TTGATGTAAAAATGCTGTCCAATT
1 TTG-TAT-ATAATGCTGTCAAATT
*
46577804 TTGTATATACATGCTGTTAAATT
1 TTGTATATA-ATGCTGTCAAATT
*
46577827 TTGTGTATAAGTGCTGTCCAAATT
1 TTGTATATAA-TGCTGT-CAAATT
* * * *
46577851 GGTGTATGT-ATGCTGCCTAATTT
1 -TTGTATATAATGCTGTC-AAATT
* *
46577874 TTGGTGA-ATTAATGCTATCCAATT
1 TT-GT-ATA-TAATGCTGTCAAATT
*
46577898 TTGTATATACATGCTGTTAAATT
1 TTGTATATA-ATGCTGTCAAATT
*
46577921 TTGTGTATAAGTGCTGTCCAAATT
1 TTGTATATAA-TGCTGT-CAAATT
* * * *
46577945 GGTGTATGT-ATGCTGCCTAATTT
1 -TTGTATATAATGCTGTC-AAATT
*
46577968 TTGGTGA-ATCAATGCTGTCCAATT
1 TT-GT-ATAT-AATGCTGTCAAATT
* *
46577992 TTGTATACACATGCTGTTAAATT
1 TTGTATATA-ATGCTGTCAAATT
*
46578015 TTGTGTATAAGTGCTGTCCAAATT
1 TTGTATATAA-TGCTGT-CAAATT
46578039 GGTATATGTA
Statistics
Matches: 193, Mismatches: 41, Indels: 52
0.67 0.14 0.18
Matches are distributed among these distances:
22 14 0.07
23 104 0.54
24 35 0.18
25 26 0.13
26 11 0.06
27 3 0.02
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.43
Consensus pattern (22 bp):
TTGTATATAATGCTGTCAAATT
Found at i:46577900 original size:94 final size:95
Alignment explanation
Indices: 46577764--46578136 Score: 545
Period size: 94 Copynumber: 3.9 Consensus size: 95
46577754 TTGTCATATA
* * *
46577764 TATGCTGTCCAAATTTTTGATGTAA-AAATGCTGTCCAATTTTGTATATACATGCTGTTAAATTT
1 TATGCTG-CCTAATTTTTGGTGAAATAAATGCTGTCCAATTTTGTATATACATGCTGTTAAATTT
46577828 TGTGTATAAGTGCTGTCCAAATTGGTGTATG
65 TGTGTATAAGTGCTGTCCAAATTGGTGTATG
* *
46577859 TATGCTGCCTAATTTTTGGTG-AATTAATGCTATCCAATTTTGTATATACATGCTGTTAAATTTT
1 TATGCTGCCTAATTTTTGGTGAAATAAATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTT
46577923 GTGTATAAGTGCTGTCCAAATTGGTGTATG
66 GTGTATAAGTGCTGTCCAAATTGGTGTATG
* *
46577953 TATGCTGCCTAATTTTTGGTG-AATCAATGCTGTCCAATTTTGTATACACATGCTGTTAAATTTT
1 TATGCTGCCTAATTTTTGGTGAAATAAATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTT
*
46578017 GTGTATAAGTGCTGTCCAAATTGGTATATG
66 GTGTATAAGTGCTGTCCAAATTGGTGTATG
* * * * *
46578047 TATGCTGCCTAATTTTTGGTGAAAAAAAATGCTGTCCAATTTTATATATATATATGCTGCTCAAT
1 TATGCTGCCTAATTTTTGGTG-AAATAAATGCTGTCCAA-TTT-TGTATATACATGCTG-TTAAA
*
46578112 TTTTGATGTATAAGAGCTGTCCAAA
62 TTTTG-TGTATAAGTGCTGTCCAAA
46578137 CAAGGTAGAT
Statistics
Matches: 255, Mismatches: 16, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
93 2 0.01
94 191 0.75
95 7 0.03
96 14 0.05
97 3 0.01
98 12 0.05
99 8 0.03
100 18 0.07
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.42
Consensus pattern (95 bp):
TATGCTGCCTAATTTTTGGTGAAATAAATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTT
GTGTATAAGTGCTGTCCAAATTGGTGTATG
Found at i:46584488 original size:28 final size:28
Alignment explanation
Indices: 46584425--46584528 Score: 145
Period size: 28 Copynumber: 3.7 Consensus size: 28
46584415 TGACTTTCGA
46584425 CACTAAGTGTGCGAGTTTAATTTGTAAAG
1 CACTAAGTGTGCGAGTTTAA-TTGTAAAG
*
46584454 CACTAAGTGTGCGAGTTTAATGGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* * **
46584482 CACTAAGTGTGCGAGTTTGATTATTGAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
*
46584510 CACTAAGTGTGCGAATTTA
1 CACTAAGTGTGCGAGTTTA
46584529 TTAAATATTT
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 47 0.70
29 20 0.30
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTGTAAAG
Found at i:46585392 original size:23 final size:22
Alignment explanation
Indices: 46585256--46585578 Score: 93
Period size: 23 Copynumber: 13.8 Consensus size: 22
46585246 TTTATGCTTA
* *
46585256 AATGCTG-CCCAATTGATGTATT
1 AATGCTGTCCAAATTGGTGTA-T
* * *
46585278 TATGCTGCCCAAATT-GTCATAT
1 AATGCTGTCCAAATTGGT-GTAT
* *
46585300 ATATGCTGTCCAAATTTTTGATGTAAA
1 A-ATGCTGTCCAAA---TTGGTGT-AT
* * *
46585327 AATGCTGTCCAATTTTGTATAT
1 AATGCTGTCCAAATTGGTGTAT
* * *
46585349 ACATGCTAT-TAAATTTTGTGTAT
1 A-ATGCTGTCCAAA-TTGGTGTAT
46585372 AAGTGCTGTCCAAATTGGTGTAT
1 AA-TGCTGTCCAAATTGGTGTAT
* * *
46585395 GTATGCTG-CCTAATTTTTGGTGAAT
1 -AATGCTGTCC-AA--ATTGGTGTAT
* * *
46585420 CAATGCTGTCCAATTTTGTATAT
1 -AATGCTGTCCAAATTGGTGTAT
* *
46585443 ACATGCTGT-TAAATTTTGTGTAT
1 A-ATGCTGTCCAAA-TTGGTGTAT
46585466 AAGTGCTGTCCAAATTGGTGTAT
1 AA-TGCTGTCCAAATTGGTGTAT
* * *
46585489 GTATGCTG-CCTAATTTTTGGTGAAT
1 -AATGCTGTCC-AA--ATTGGTGTAT
* * * *
46585514 CAATGCTGTCCAATTTTGTATAC
1 -AATGCTGTCCAAATTGGTGTAT
* *
46585537 ACATGCTGT-TAAATTTTGTGTAT
1 A-ATGCTGTCCAAA-TTGGTGTAT
46585560 AAGTGCTGTCCAAATTGGT
1 AA-TGCTGTCCAAATTGGT
46585579 ATATGTATGC
Statistics
Matches: 222, Mismatches: 49, Indels: 59
0.67 0.15 0.18
Matches are distributed among these distances:
22 25 0.11
23 133 0.60
24 11 0.05
25 32 0.14
26 18 0.08
27 3 0.01
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (22 bp):
AATGCTGTCCAAATTGGTGTAT
Found at i:46585437 original size:94 final size:95
Alignment explanation
Indices: 46585301--46585671 Score: 550
Period size: 94 Copynumber: 3.9 Consensus size: 95
46585291 TTGTCATATA
* * * *
46585301 TATGCTGTCCAAATTTTTGATGTAA-AAATGCTGTCCAATTTTGTATATACATGCTATTAAATTT
1 TATGCTG-CCTAATTTTTGGTGAAATAAATGCTGTCCAATTTTGTATATACATGCTGTTAAATTT
46585365 TGTGTATAAGTGCTGTCCAAATTGGTGTATG
65 TGTGTATAAGTGCTGTCCAAATTGGTGTATG
*
46585396 TATGCTGCCTAATTTTTGGTG-AATCAATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTT
1 TATGCTGCCTAATTTTTGGTGAAATAAATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTT
46585460 GTGTATAAGTGCTGTCCAAATTGGTGTATG
66 GTGTATAAGTGCTGTCCAAATTGGTGTATG
* *
46585490 TATGCTGCCTAATTTTTGGTG-AATCAATGCTGTCCAATTTTGTATACACATGCTGTTAAATTTT
1 TATGCTGCCTAATTTTTGGTGAAATAAATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTT
*
46585554 GTGTATAAGTGCTGTCCAAATTGGTATATG
66 GTGTATAAGTGCTGTCCAAATTGGTGTATG
* * * * * *
46585584 TATGCTGCCTAATTTTTGGTGAAAAAAAATGCTGTCTAATTTTATATATATATGCTGCTCAATTT
1 TATGCTGCCTAATTTTTGGTG-AAATAAATGCTGTCCAATTTTGTATATACATGCTG-TTAAATT
*
46585649 TTGATGTATAAGAGCTGTCCAAA
64 TTG-TGTATAAGTGCTGTCCAAA
46585672 CAGGGTAGAT
Statistics
Matches: 256, Mismatches: 15, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
93 2 0.01
94 193 0.75
95 7 0.03
96 28 0.11
97 8 0.03
98 18 0.07
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (95 bp):
TATGCTGCCTAATTTTTGGTGAAATAAATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTT
GTGTATAAGTGCTGTCCAAATTGGTGTATG
Found at i:46585589 original size:46 final size:46
Alignment explanation
Indices: 46585280--46585671 Score: 277
Period size: 46 Copynumber: 8.2 Consensus size: 46
46585270 GATGTATTTA
* * * *
46585280 TGCTGCCCAAATT-GTCATATATATGCTGTCCAAATTTTTGATGTAAAAA
1 TGCTGTCCAAATTGGT-ATATATATGCTGT-TAAA-TTTTG-TGTATAAG
* * * *
46585329 TGCTGTCCAATTTTGTATATACATGCTATTAAATTTTGTGTATAAG
1 TGCTGTCCAAATTGGTATATATATGCTGTTAAATTTTGTGTATAAG
* * * * *
46585375 TGCTGTCCAAATTGGTGTATGTATGCTGCCTAATTTTTGGTGAATCAA-
1 TGCTGTCCAAATTGGTATATATATGCTG-TTAAATTTT-GTGTAT-AAG
* * *
46585423 TGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAAG
1 TGCTGTCCAAATTGGTATATATATGCTGTTAAATTTTGTGTATAAG
* * * * *
46585469 TGCTGTCCAAATTGGTGTATGTATGCTGCCTAATTTTTGGTGAATCAA-
1 TGCTGTCCAAATTGGTATATATATGCTG-TTAAATTTT-GTGTAT-AAG
* * * *
46585517 TGCTGTCCAATTTTGTATACACATGCTGTTAAATTTTGTGTATAAG
1 TGCTGTCCAAATTGGTATATATATGCTGTTAAATTTTGTGTATAAG
* * * * * *
46585563 TGCTGTCCAAATTGGTATATGTATGCTGCCTAATTTTTGGTGAAAAAAAA
1 TGCTGTCCAAATTGGTATATATATGCTG-TTAAATTTT-GTG--TATAAG
* * ** * *
46585613 TGCTGTCTAATTTTATATATATATGCTGCTCAATTTTTGATGTATAAG
1 TGCTGTCCAAATTGGTATATATATGCTG-TTAAATTTTG-TGTATAAG
*
46585661 AGCTGTCCAAA
1 TGCTGTCCAAA
46585672 CAGGGTAGAT
Statistics
Matches: 265, Mismatches: 64, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
45 4 0.02
46 84 0.32
47 40 0.15
48 72 0.27
49 27 0.10
50 38 0.14
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (46 bp):
TGCTGTCCAAATTGGTATATATATGCTGTTAAATTTTGTGTATAAG
Found at i:46590615 original size:26 final size:25
Alignment explanation
Indices: 46590586--46590659 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 25
46590576 ATCACTTTAA
46590586 TATTAAATTAATATAATATTTAATCT
1 TATTAAATTAATATAATATTT-ATCT
* * *
46590612 TATTAAAATAATAAAATGTTTATCT
1 TATTAAATTAATATAATATTTATCT
*
46590637 TACATTAAAATTAATTTAATATT
1 T--ATT-AAATTAATATAATATT
46590660 AAGATAATCA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
25 5 0.13
26 18 0.47
27 3 0.08
28 12 0.32
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.47
Consensus pattern (25 bp):
TATTAAATTAATATAATATTTATCT
Found at i:46593585 original size:51 final size:52
Alignment explanation
Indices: 46593507--46593661 Score: 208
Period size: 51 Copynumber: 3.0 Consensus size: 52
46593497 AAGATGGTTA
* * *
46593507 TGGTCACATGTGTAGTACTAAGCGCAGGTTAATATGTGTACCGGATAGCT-T
1 TGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAGCTAT
* * * *
46593558 TGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT-GGTAT
1 TGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAGCTAT
* *
46593609 TGGTCACATGTGTGGTACTAAGTGTAGGCTACTATGTGTACCGGATAGC-AT
1 TGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAGCTAT
46593660 TG
1 TG
46593662 ATCATAAGGG
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.02
51 86 0.97
52 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.32
Consensus pattern (52 bp):
TGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAGCTAT
Found at i:46593681 original size:102 final size:102
Alignment explanation
Indices: 46593499--46593683 Score: 237
Period size: 102 Copynumber: 1.8 Consensus size: 102
46593489 GATAGTATAA
* * *
46593499 GATGGTTATGGTCACATGTGTAGTACTAAGCGCAGGTTAATATGTGTACCGGATAGCTTTGGTCA
1 GATGGTTATGGTCACATGTGTAGTACTAAGCGCAGGCTAATATGTGTACCGGATAGCATTGATCA
** *
46593564 CGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
66 CAAGGGTAGTACTATGTGCAGGCTACTACGTGTACCG
* * * *
46593601 GATGG-TATTGGTCACATGTGTGGTACTAAGTGTAGGCTACTATGTGTACCGGATAGCATTGATC
1 GATGGTTA-TGGTCACATGTGTAGTACTAAGCGCAGGCTAATATGTGTACCGGATAGCATTGATC
* * *
46593665 ATAAGGGTGGTGCTATGTG
65 ACAAGGGTAGTACTATGTG
46593684 TGGAACCACC
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
101 2 0.03
102 67 0.97
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.32
Consensus pattern (102 bp):
GATGGTTATGGTCACATGTGTAGTACTAAGCGCAGGCTAATATGTGTACCGGATAGCATTGATCA
CAAGGGTAGTACTATGTGCAGGCTACTACGTGTACCG
Found at i:46598605 original size:21 final size:21
Alignment explanation
Indices: 46598581--46598624 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
46598571 GAATCTTTAG
*
46598581 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
46598602 TATTTAATTATCCTTTCTATT
1 TATTTAATTATCATTTCTATT
46598623 TA
1 TA
46598625 ATTAGTTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:46603044 original size:29 final size:27
Alignment explanation
Indices: 46602980--46603044 Score: 67
Period size: 29 Copynumber: 2.3 Consensus size: 27
46602970 TTGACAAGAA
* * *
46602980 ATAATAATATATAAAATTTTAAAATAT
1 ATAATAATACATAAAATTTTAAAAAAG
* *
46603007 ATAAAAATACATAACTATTTTAAAAAAAG
1 ATAATAATACATAA-AATTTT-AAAAAAG
46603036 ATAATAATA
1 ATAATAATA
46603045 AATTTAAATT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
27 12 0.40
28 5 0.17
29 13 0.43
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.34
Consensus pattern (27 bp):
ATAATAATACATAAAATTTTAAAAAAG
Found at i:46603080 original size:93 final size:94
Alignment explanation
Indices: 46602908--46603104 Score: 219
Period size: 93 Copynumber: 2.1 Consensus size: 94
46602898 AAAATTAAAG
* ** *
46602908 AAATATAAAAAAATACATAAACATTTTAAAAAATATATAATAATAAATCTAAATATATATTTTTG
1 AAATATAAAAAAATACATAAACATTTTAAAAAATAGATAATAATAAATCTAAATATATATTAATA
*
46602973 ACAAGAAATAATAA-TATATAAAATTTTA
66 ACAAGAAATAATAATTATATAAAATATTA
* * *
46603001 AAATATATAAAAATACAT-AACTATTTTAAAAAA-AGATAATAATAAATTTAAATTTTATATTAA
1 AAATATAAAAAAATACATAAAC-ATTTTAAAAAATAGATAATAATAAATCTAAA-TATATATTAA
* *
46603064 TAATAA-ATAA-AGATAATTATATTAAATATT-
64 TAACAAGA-AATA-ATAATTATATAAAATATTA
46603094 AAATA-AAAAAA
1 AAATATAAAAAA
46603105 CTCTCCCCCG
Statistics
Matches: 88, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
92 27 0.31
93 50 0.57
94 11 0.12
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (94 bp):
AAATATAAAAAAATACATAAACATTTTAAAAAATAGATAATAATAAATCTAAATATATATTAATA
ACAAGAAATAATAATTATATAAAATATTA
Found at i:46603214 original size:6 final size:6
Alignment explanation
Indices: 46603205--46603229 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
46603195 TTATTTTTAT
46603205 TTAATA TTAATA TTAATA TTAATA T
1 TTAATA TTAATA TTAATA TTAATA T
46603230 AAAATTCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAATA
Found at i:46603281 original size:17 final size:17
Alignment explanation
Indices: 46603261--46603299 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
46603251 ATTTTTAAAA
**
46603261 ATATTTGAGTATTTTAT
1 ATATTTGAACATTTTAT
*
46603278 ATATTTTAACATTTTAT
1 ATATTTGAACATTTTAT
46603295 ATATT
1 ATATT
46603300 ATTTCTTGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (17 bp):
ATATTTGAACATTTTAT
Found at i:46604443 original size:15 final size:15
Alignment explanation
Indices: 46604420--46604449 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
46604410 GTAAGGATGT
46604420 GAACACACCATGTGC
1 GAACACACCATGTGC
*
46604435 GAACCCACCATGTGC
1 GAACACACCATGTGC
46604450 CAGCCCCTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.37, G:0.20, T:0.13
Consensus pattern (15 bp):
GAACACACCATGTGC
Found at i:46607129 original size:6 final size:6
Alignment explanation
Indices: 46607118--46607168 Score: 66
Period size: 6 Copynumber: 8.5 Consensus size: 6
46607108 AGGTTTCCAA
* * * *
46607118 AAATGG AAATGG AAATGG AAATGG AAATGA AAATGA AAATGA AAATTG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG
46607166 AAA
1 AAA
46607169 CTTACAATCC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.59, C:0.00, G:0.24, T:0.18
Consensus pattern (6 bp):
AAATGG
Found at i:46607356 original size:27 final size:27
Alignment explanation
Indices: 46607309--46607373 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
46607299 GTGAAATTTC
* **
46607309 TCAAAATTTTA-CTGGGAGTAAAATTG
1 TCAAAATTTTATCAGGGAGTAAAATCA
46607335 TCAAAATTTTATCAAGGG-GTAAAATCA
1 TCAAAATTTTATC-AGGGAGTAAAATCA
46607362 TCAAAATTTTAT
1 TCAAAATTTTAT
46607374 TCGAGCAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 11 0.32
27 20 0.59
28 3 0.09
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (27 bp):
TCAAAATTTTATCAGGGAGTAAAATCA
Found at i:46609591 original size:23 final size:23
Alignment explanation
Indices: 46609565--46609644 Score: 151
Period size: 23 Copynumber: 3.5 Consensus size: 23
46609555 CGTCACAAGT
46609565 GAATTAATTCACAAACGAATTCA
1 GAATTAATTCACAAACGAATTCA
*
46609588 GAATTAATTCATAAACGAATTCA
1 GAATTAATTCACAAACGAATTCA
46609611 GAATTAATTCACAAACGAATTCA
1 GAATTAATTCACAAACGAATTCA
46609634 GAATTAATTCA
1 GAATTAATTCA
46609645 TCTTGGGTCC
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 55 1.00
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.29
Consensus pattern (23 bp):
GAATTAATTCACAAACGAATTCA
Found at i:46609598 original size:11 final size:11
Alignment explanation
Indices: 46609582--46609644 Score: 54
Period size: 11 Copynumber: 5.5 Consensus size: 11
46609572 TTCACAAACG
46609582 AATTCAGAATT
1 AATTCAGAATT
* **
46609593 AATTCATAAACG
1 AATTCA-GAATT
46609605 AATTCAGAATT
1 AATTCAGAATT
* **
46609616 AATTCACAAACG
1 AATTCA-GAATT
46609628 AATTCAGAATT
1 AATTCAGAATT
46609639 AATTCA
1 AATTCA
46609645 TCTTGGGTCC
Statistics
Matches: 38, Mismatches: 12, Indels: 4
0.70 0.22 0.07
Matches are distributed among these distances:
11 22 0.58
12 16 0.42
ACGTcount: A:0.48, C:0.14, G:0.08, T:0.30
Consensus pattern (11 bp):
AATTCAGAATT
Found at i:46613101 original size:27 final size:27
Alignment explanation
Indices: 46613061--46613467 Score: 301
Period size: 27 Copynumber: 15.1 Consensus size: 27
46613051 TAACAGTCAA
*
46613061 TTTACCCTAT-AGGGGTATTTTAGTAAT
1 TTTACCC-ATCAGGGGTATTTTGGTAAT
*
46613088 TTTACCCATCAGGGGTATTTCGGTAAT
1 TTTACCCATCAGGGGTATTTTGGTAAT
* * ** *
46613115 TTTACTCTTTGGGGGTATCTTGGTAAT
1 TTTACCCATCAGGGGTATTTTGGTAAT
** * *
46613142 TTTACCCATCAAAGGTATTTCGGTAAA
1 TTTACCCATCAGGGGTATTTTGGTAAT
* * *
46613169 TTTACCCATTAGGGGTATTTCGATAAT
1 TTTACCCATCAGGGGTATTTTGGTAAT
* * *
46613196 TTTACCCGTTAAGGGTATTTTGGTAAT
1 TTTACCCATCAGGGGTATTTTGGTAAT
* * * * *
46613223 TTAACCCATCAAGGGTATTTCGATAGT
1 TTTACCCATCAGGGGTATTTTGGTAAT
* * *
46613250 TTTATCCATC-GAAGGTATTTCGGTAAT
1 TTTACCCATCAG-GGGTATTTTGGTAAT
* * * * *
46613277 TATACCCAT-TGAGGATATTTCGATAAT
1 TTTACCCATCAG-GGGTATTTTGGTAAT
*
46613304 TTTACCCATC-GAGGGTATTTTGATAAT
1 TTTACCCATCAG-GGGTATTTTGGTAAT
46613331 TTTACCCATCTA-GGGTATTTTGGTAAT
1 TTTACCCATC-AGGGGTATTTTGGTAAT
* * *
46613358 TTTACCCATC-GAGAGTATTTCGGTAGT
1 TTTACCCATCAG-GGGTATTTTGGTAAT
* *
46613385 TTTACCCATC-GAGGGTATTTCGATAAT
1 TTTACCCATCAG-GGGTATTTTGGTAAT
* * *
46613412 TTTACTCGTC-GAGGGTATTTTGATAAT
1 TTTACCCATCAG-GGGTATTTTGGTAAT
* *
46613439 TTTACCCATC-GAGGGTATTTCGATAAT
1 TTTACCCATCAG-GGGTATTTTGGTAAT
46613466 TT
1 TT
46613468 AGGCCCATTA
Statistics
Matches: 313, Mismatches: 59, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.01
27 311 0.99
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.40
Consensus pattern (27 bp):
TTTACCCATCAGGGGTATTTTGGTAAT
Found at i:46613141 original size:54 final size:54
Alignment explanation
Indices: 46613084--46613467 Score: 405
Period size: 54 Copynumber: 7.1 Consensus size: 54
46613074 GGTATTTTAG
* * ** *
46613084 TAATTTTACCCATC-AGGGGTATTTCGGTAATTTTACTCTTTGGGGGTATCTT-GG
1 TAATTTTACCCATCGA-GGGTATTTCGGTAATTTTACCCATTAAGGGTAT-TTCGA
* * * *
46613138 TAATTTTACCCATCAAAGGTATTTCGGTAAATTTACCCATTAGGGGTATTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCATTAAGGGTATTTCGA
* ** * * *
46613192 TAATTTTACCCGTTAAGGGTATTTTGGTAATTTAACCCATCAAGGGTATTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCATTAAGGGTATTTCGA
* * * * * *
46613246 TAGTTTTATCCATCGAAGGTATTTCGGTAATTATACCCATTGAGGATATTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCATTAAGGGTATTTCGA
* * * *
46613300 TAATTTTACCCATCGAGGGTATTTTGATAATTTTACCCATCT-AGGGTATTTTGG
1 TAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCAT-TAAGGGTATTTCGA
* * **
46613354 TAATTTTACCCATCGAGAGTATTTCGGTAGTTTTACCCATCGAGGGTATTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCATTAAGGGTATTTCGA
* * * * **
46613408 TAATTTTACTCGTCGAGGGTATTTTGATAATTTTACCCATCGAGGGTATTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCATTAAGGGTATTTCGA
46613462 TAATTT
1 TAATTT
46613468 AGGCCCATTA
Statistics
Matches: 278, Mismatches: 48, Indels: 8
0.83 0.14 0.02
Matches are distributed among these distances:
53 2 0.01
54 274 0.99
55 2 0.01
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.40
Consensus pattern (54 bp):
TAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCATTAAGGGTATTTCGA
Found at i:46613196 original size:81 final size:81
Alignment explanation
Indices: 46613084--46613467 Score: 407
Period size: 81 Copynumber: 4.7 Consensus size: 81
46613074 GGTATTTTAG
* * * *
46613084 TAATTTTACCCATCAGGGGTATTTCGGTAATTTTACTCTTTGGGGGTATCTT-GGTAATTTTACC
1 TAATTTTACCCATTAGGGGTATTTCGGTAATTTTACCCATTGAGGGTAT-TTCGGTAATTTTACC
* *
46613148 CATCAAAGGTATTTCGG
65 CATCAAGGGTATTTCGA
* * * * * *
46613165 TAAATTTACCCATTAGGGGTATTTCGATAATTTTACCCGTTAAGGGTATTTTGGTAATTTAACCC
1 TAATTTTACCCATTAGGGGTATTTCGGTAATTTTACCCATTGAGGGTATTTCGGTAATTTTACCC
46613230 ATCAAGGGTATTTCGA
66 ATCAAGGGTATTTCGA
* * * * * * *
46613246 TAGTTTTATCCA-TCGAAGGTATTTCGGTAATTATACCCATTGAGGATATTTCGATAATTTTACC
1 TAATTTTACCCATTAG-GGGTATTTCGGTAATTTTACCCATTGAGGGTATTTCGGTAATTTTACC
* *
46613310 CATCGAGGGTATTTTGA
65 CATCAAGGGTATTTCGA
* * * *
46613327 TAATTTTACCCATCTA-GGGTATTTTGGTAATTTTACCCATCGAGAGTATTTCGGTAGTTTTACC
1 TAATTTTACCCAT-TAGGGGTATTTCGGTAATTTTACCCATTGAGGGTATTTCGGTAATTTTACC
*
46613391 CATCGAGGGTATTTCGA
65 CATCAAGGGTATTTCGA
* * * * * * *
46613408 TAATTTTACTC-GTCGAGGGTATTTTGATAATTTTACCCATCGAGGGTATTTCGATAATTT
1 TAATTTTACCCATTAG-GGGTATTTCGGTAATTTTACCCATTGAGGGTATTTCGGTAATTT
46613468 AGGCCCATTA
Statistics
Matches: 253, Mismatches: 44, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
79 1 0.00
80 4 0.02
81 247 0.98
83 1 0.00
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.40
Consensus pattern (81 bp):
TAATTTTACCCATTAGGGGTATTTCGGTAATTTTACCCATTGAGGGTATTTCGGTAATTTTACCC
ATCAAGGGTATTTCGA
Found at i:46614678 original size:22 final size:22
Alignment explanation
Indices: 46614623--46614678 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 22
46614613 CCTCTGACCT
*
46614623 CCTTACCACACCTGTGACGCCA
1 CCTTGCCACACCTGTGACGCCA
*
46614645 CCTTATTGCCACACCTGTGTCGCCA
1 CC---TTGCCACACCTGTGACGCCA
46614670 CCTTGCCAC
1 CCTTGCCAC
46614679 TACACCACAG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
22 9 0.31
25 20 0.69
ACGTcount: A:0.18, C:0.45, G:0.14, T:0.23
Consensus pattern (22 bp):
CCTTGCCACACCTGTGACGCCA
Found at i:46617278 original size:27 final size:27
Alignment explanation
Indices: 46617247--46617736 Score: 569
Period size: 27 Copynumber: 18.2 Consensus size: 27
46617237 GGTATTTTAG
*
46617247 TAATTTTACCCATC-ATGGGTATTTTGA
1 TAATTTTACCCATCGA-GGGTATTTCGA
* ** *
46617274 AAATTTTACCTTTCGGGGGTATTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGA
**
46617301 TAATTTTACCCATCGAGGGTATTTTAA
1 TAATTTTACCCATCGAGGGTATTTCGA
* **
46617328 TAATTTTACCCATCGAAGGTATTTTAA
1 TAATTTTACCCATCGAGGGTATTTCGA
*
46617355 TAATTTTACCCATC-AGGGGTATTTCGG
1 TAATTTTACCCATCGA-GGGTATTTCGA
*
46617382 TAATTTTACCCATCGAGGGTATTTCGG
1 TAATTTTACCCATCGAGGGTATTTCGA
* * * * *
46617409 TAGTTTTA-CCATTGAGGTTATTTTGG
1 TAATTTTACCCATCGAGGGTATTTCGA
* *
46617435 TAATTTTACCCATCGAGAGTATTTCGG
1 TAATTTTACCCATCGAGGGTATTTCGA
* * * * *
46617462 TAGTTTTACTCATCTAGGTTATTT-TA
1 TAATTTTACCCATCGAGGGTATTTCGA
* *
46617488 GTAATTTTACCCATCGAGGGTATTTTGG
1 -TAATTTTACCCATCGAGGGTATTTCGA
*
46617516 TAGTTTTACCCATCGAGGGTATTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGA
*
46617543 TAGTTTTACCCATCGAGGGTATTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGA
*
46617570 TAGTTTTACCCATCGAGGGTATTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGA
*
46617597 TAGTTTTA-CCATCGAGGGTATTTC-A
1 TAATTTTACCCATCGAGGGTATTTCGA
*
46617622 GTAATTTTACCCATTGAGGGTATTTCGA
1 -TAATTTTACCCATCGAGGGTATTTCGA
*
46617650 TAATTTTACCCATCGAGGGTATTTCAA
1 TAATTTTACCCATCGAGGGTATTTCGA
* *
46617677 TAATTTTACCCATCGAAGGTATTTCGG
1 TAATTTTACCCATCGAGGGTATTTCGA
* * *
46617704 TAATTTTATCCATTGAGTGTATTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGA
46617731 TAATTT
1 TAATTT
46617737 AGACCCATTA
Statistics
Matches: 401, Mismatches: 53, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
25 1 0.00
26 46 0.11
27 352 0.88
28 2 0.00
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.41
Consensus pattern (27 bp):
TAATTTTACCCATCGAGGGTATTTCGA
Found at i:46617730 original size:161 final size:159
Alignment explanation
Indices: 46617250--46617732 Score: 596
Period size: 161 Copynumber: 3.0 Consensus size: 159
46617240 ATTTTAGTAA
* * *
46617250 TTTTACCCATC-ATGGGTATTTTGAAAATTTTACCTTTCGGGGGTATTTCGATAATTTTACCCAT
1 TTTTACCCATCGA-GGGTATTTTGATAATTTTACC-ATCGAGGGTATTTCG-TAATTTTACCCAT
* *
46617314 CGAGGGTATTTTAATAATTTTACCCATCGAAGGTATTTTAATAATTTTACCCATC-AGGGGTATT
63 TGAGGGTA-TTTAATAATTTTACCCATCGAGGGTATTTTAATAATTTTACCCATCGA-GGGTATT
*
46617378 TCGGTAATTTTACCCATCGAGGGTATTTCGGTAG
126 TCGGTAATTTTACCCATCGAGGGTATTTCGATAG
* * * * * *
46617412 TTTTA-CCATTGAGGTTATTTTGGTAATTTTACCCATCGAGAGTATTTCGGTAGTTTTACTCATC
1 TTTTACCCATCGAGGGTATTTTGATAATTTTA-CCATCGAGGGTATTTC-GTAATTTTACCCAT-
* * ** *
46617476 T-AGGTTATTTTAGTAATTTTACCCATCGAGGGTATTTTGGTAGTTTTACCCATCGAGGGTATTT
63 TGAGGGTA-TTTAATAATTTTACCCATCGAGGGTATTTTAATAATTTTACCCATCGAGGGTATTT
* *
46617540 CGATAGTTTTACCCATCGAGGGTATTTCGATAG
127 CGGTAATTTTACCCATCGAGGGTATTTCGATAG
* *
46617573 TTTTACCCATCGAGGGTATTTCGATAGTTTTACCATCGAGGGTATTTCAGTAATTTTACCCATTG
1 TTTTACCCATCGAGGGTATTTTGATAATTTTACCATCGAGGGTATTTC-GTAATTTTACCCATTG
* * *
46617638 AGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCAATAATTTTACCCATCGAAGGTATTTCG
65 AGGGTATTT-AATAATTTTACCCATCGAGGGTATTTTAATAATTTTACCCATCGAGGGTATTTCG
* * *
46617703 GTAATTTTATCCATTGAGTGTATTTCGATA
129 GTAATTTTACCCATCGAGGGTATTTCGATA
46617733 ATTTAGACCC
Statistics
Matches: 272, Mismatches: 41, Indels: 17
0.82 0.12 0.05
Matches are distributed among these distances:
160 4 0.01
161 237 0.87
162 31 0.11
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.41
Consensus pattern (159 bp):
TTTTACCCATCGAGGGTATTTTGATAATTTTACCATCGAGGGTATTTCGTAATTTTACCCATTGA
GGGTATTTAATAATTTTACCCATCGAGGGTATTTTAATAATTTTACCCATCGAGGGTATTTCGGT
AATTTTACCCATCGAGGGTATTTCGATAG
Found at i:46621268 original size:2 final size:2
Alignment explanation
Indices: 46621263--46621309 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
46621253 TTTTTTACAT
46621263 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
46621305 AG AG A
1 AG AG A
46621310 TGGGCGTGGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:46625521 original size:282 final size:282
Alignment explanation
Indices: 46625017--46626382 Score: 1839
Period size: 282 Copynumber: 4.9 Consensus size: 282
46625007 ATGAAGGCGA
** * *
46625017 AGACTAATGCAGTGCTGCCAGTTCTTGAAGCAAGATCAGCAGAAGAAATTTATTTGGCTTTTAAG
1 AGACTAATGTGGTGCTGCCAGTTCTTGAAGCAAGATCAGCAGAAGATATTGATTTGGCTTTTAAG
** * * * *
46625082 CAACTTCATGAAGGAGTCGACATTGAGGAAGTAACTGTTCTGAGTATGATCGAGAAACCGCCAGA
66 CAACTTCATGAAGGAGTCGATGTTGAGGAAGTAATTGTTCCGAGTATGATTGAGAAACTGCCAGA
* *
46625147 TCATGGAGGTAACAAATCAAAATTACCTGTT-TTCGAGGCAAGGTCTCTGGAGGATATACATAAA
131 TCATGGAGATAACAAATCAAAATTACCTGTTGTT-GAGGCAAGATCTCTGGAGGATATACATAAA
* *
46625211 GCTGTTCGACAACTTCCGGAATCTAATCCAGCTGAGCCGCCACATTCTTCAGGCTCAAAGAATGA
195 GCTGTTCAACAACTTCCGGAATCTAATCCAGCTGAGCCGCCACATTCTTCAGGCTCAAGGAATGA
*
46625276 ATCATCAAAAGATACGAAAACTG
260 ATCATCAAAAGATACGAAGACTG
* *
46625299 AGACTAATGTGGTGCTGCCTA-TTCTTGAAGCAAGATCAGCCGAAGATATTGATTTGACTTTTAA
1 AGACTAATGTGGTGCTGCC-AGTTCTTGAAGCAAGATCAGCAGAAGATATTGATTTGGCTTTTAA
* * * *
46625363 GCAACTTCATGAAGGAGTCGATGTTGAGGAAGTCATTGTTCCAAGTATGATCGAGAAACTGACAG
65 GCAACTTCATGAAGGAGTCGATGTTGAGGAAGTAATTGTTCCGAGTATGATTGAGAAACTGCCAG
* * *
46625428 ATCATGGAGATATCAAATCAAAATTACCTATTGTTGAGGCAAGGTCTCTGGAGGATATACATAAA
130 ATCATGGAGATAACAAATCAAAATTACCTGTTGTTGAGGCAAGATCTCTGGAGGATATACATAAA
* * *
46625493 GCTGTTCGACAACTTCCGGAATCTAATCCAGCTGAGCCGCCGCATTCTTCAGGCTTAAGGAATGA
195 GCTGTTCAACAACTTCCGGAATCTAATCCAGCTGAGCCGCCACATTCTTCAGGCTCAAGGAATGA
* *
46625558 ATCATCAACAGATACGAATACTG
260 ATCATCAAAAGATACGAAGACTG
* * *
46625581 AGACTAATGTGGTGCTTCCAGTTCTTGAAACAAGGTCAGCAGAAGATATTGATTTGGCTTTTAAG
1 AGACTAATGTGGTGCTGCCAGTTCTTGAAGCAAGATCAGCAGAAGATATTGATTTGGCTTTTAAG
*
46625646 CAACTTCATGAAGGAGTCAATGTTGAGGAAGTAATTGTTCCGAGTATGATTGAGAAACTGCCAGA
66 CAACTTCATGAAGGAGTCGATGTTGAGGAAGTAATTGTTCCGAGTATGATTGAGAAACTGCCAGA
* * * * *
46625711 TCTTGGAGATAACAAATCAAAATTACCTGTTGTTGAGGCAAGATCTCTGGAGGATTTAGACAAAT
131 TCATGGAGATAACAAATCAAAATTACCTGTTGTTGAGGCAAGATCTCTGGAGGATATACATAAAG
* * * * *
46625776 CTATTCAACAACTTGCGAAACCTAAT-C--C--A---G-CATATTCTTCAGGCTCAAGGAATGAA
196 CTGTTCAACAACTTCCGGAATCTAATCCAGCTGAGCCGCCACATTCTTCAGGCTCAAGGAATGAA
* *
46625832 TCATCAAAAGATGCGAAGACCG
261 TCATCAAAAGATACGAAGACTG
46625854 AGACTAATGTGGTGCTGCCAGTTCTTGAAGCAAGATCAGCAGAAGATATTGATTTGGCTTTTAAG
1 AGACTAATGTGGTGCTGCCAGTTCTTGAAGCAAGATCAGCAGAAGATATTGATTTGGCTTTTAAG
*
46625919 CAACTGCATGAAGGAG-CTGATGTTGAGGAAGTAATTGTTCCGAGTATGATTGAGAAACTGCCAG
66 CAACTTCATGAAGGAGTC-GATGTTGAGGAAGTAATTGTTCCGAGTATGATTGAGAAACTGCCAG
* * ** * * *
46625983 ACCATGGAGATAACAAATCAAAATTACGTGTTGTCAAGGCAAGATCTCTGGAGGACATAGACAAA
130 ATCATGGAGATAACAAATCAAAATTACCTGTTGTTGAGGCAAGATCTCTGGAGGATATACATAAA
* * * * **
46626048 GCTATCCAACAACTTCCGAAATCTAATCCAGCTGAGCTGCCACATTCTTCAGTTTCAAGGAATGA
195 GCTGTTCAACAACTTCCGGAATCTAATCCAGCTGAGCCGCCACATTCTTCAGGCTCAAGGAATGA
* *
46626113 ACCATCAAAAGATATGAAGACTG
260 ATCATCAAAAGATACGAAGACTG
46626136 AGACTAATGTGGTGCTGCCAGTTCTTGAAGCAAGATCAGCAGAAGATATTGATTTGGCTTTTAAG
1 AGACTAATGTGGTGCTGCCAGTTCTTGAAGCAAGATCAGCAGAAGATATTGATTTGGCTTTTAAG
* * * *
46626201 CAACTGCATGAAGGAG-CTGATGTTGAGGAAGTAATTGTTCCAAGTATGATTGTGGAAC--CACA
66 CAACTTCATGAAGGAGTC-GATGTTGAGGAAGTAATTGTTCCGAGTATGATTGAGAAACTGC-CA
* *** * *
46626263 GGATGACACAGATAACAAATCAAAATTACCTGTTGTGGAGGCAAGATCTCTGAAGGA-ATTACAT
129 -GATCATGGAGATAACAAATCAAAATTACCTGTTGTTGAGGCAAGATCTCTGGAGGATA-TACAT
* * ** * * *
46626327 AATGCTGTCCAACAA-GACCTGGAATCTGATCCAGCTAAGCTGCCACATTCTTCAGG
192 AAAGCTGTTCAACAACTTCC-GGAATCTAATCCAGCTGAGCCGCCACATTCTTCAGG
46626383 TGTAAACAAT
Statistics
Matches: 970, Mismatches: 97, Indels: 34
0.88 0.09 0.03
Matches are distributed among these distances:
272 1 0.00
273 244 0.25
274 2 0.00
276 1 0.00
277 1 0.00
278 1 0.00
279 1 0.00
280 1 0.00
281 8 0.01
282 707 0.73
283 3 0.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (282 bp):
AGACTAATGTGGTGCTGCCAGTTCTTGAAGCAAGATCAGCAGAAGATATTGATTTGGCTTTTAAG
CAACTTCATGAAGGAGTCGATGTTGAGGAAGTAATTGTTCCGAGTATGATTGAGAAACTGCCAGA
TCATGGAGATAACAAATCAAAATTACCTGTTGTTGAGGCAAGATCTCTGGAGGATATACATAAAG
CTGTTCAACAACTTCCGGAATCTAATCCAGCTGAGCCGCCACATTCTTCAGGCTCAAGGAATGAA
TCATCAAAAGATACGAAGACTG
Found at i:46626076 original size:555 final size:559
Alignment explanation
Indices: 46625017--46626319 Score: 1800
Period size: 555 Copynumber: 2.3 Consensus size: 559
46625007 ATGAAGGCGA
** * *
46625017 AGACTAATGCAGTGCTGCCAGTTCTTGAAGCAAGATCAGCAGAAGAAATTTATTTGGCTTTTAAG
1 AGACTAATGTGGTGCTGCCAGTTCTTGAAGCAAGATCAGCAGAAGATATTGATTTGGCTTTTAAG
** * * *
46625082 CAACTTCATGAAGGAGTCGACATTGAGGAAGTAACTGTTCTGAGTATGATCGAGAAACCGCCAGA
66 CAACTTCATGAAGGAGTCGATGTTGAGGAAGTAATTGTTCCGAGTATGATTGAGAAA-CGCCAGA
* * *
46625147 TCATGGAGGTAACAAATCAAAATTACCTGTT-TTCGAGGCAAGGTCTCTGGAGGATATACATAAA
130 TCATGGAGATAACAAATCAAAATTACCTGTTGTT-GAGGCAAGATCTCTGGAGGATATACACAAA
* * * *
46625211 GCTGTTCGACAACTTCCGGAATCTAATCCAGCTGAGCCGCCACATTCTTCAGGCTCAAAGAATGA
194 GCTATTCAACAACTTCCGAAACCTAATCCA-C-GA--CGCCACATTCTTCAGGCTCAAAGAATGA
* *
46625276 ATCATCAAAAGATACGAAAACTGAGACTAATGTGGTGCTGCCTATTCTTGAAGCAAGATCAGCCG
255 ATCATCAAAAGATACGAAAACCGAGACTAATGTGGTGCTGCCTATTCTTGAAGCAAGATCAGCAG
* *
46625341 AAGATATTGATTTGACTTTTAAGCAACTTCATGAAGGAGTCGATGTTGAGGAAGTCATTGTTCCA
320 AAGATATTGATTTGACTTTTAAGCAACTGCATGAAGGAGTCGATGTTGAGGAAGTAATTGTTCCA
* * **
46625406 AGTATGATCGAGAAACTGACAGATCATGGAGATATCAAATCAAAATTACCTATTGTTGAGGCAAG
385 AGTATGATCGAGAAACTGACAGACCATGGAGATAACAAATCAAAATTACCTATTGTCAAGGCAAG
* * * * * * * *
46625471 GTCTCTGGAGGATATACATAAAGCTGTTCGACAACTTCCGGAATCTAATCCAGCTGAGCCGCCGC
450 ATCTCTGGAGGACATACACAAAGCTATCCAACAACTTCCGAAATCTAATCCAGCTGAGCCGCCAC
* * *
46625536 ATTCTTCAGGCTT-AAGGAATGAATCATCAACAGATACGAATACTG
515 ATTCTTCA-GCTTCAAGGAATGAACCATCAAAAGATACGAAGACTG
* * *
46625581 AGACTAATGTGGTGCTTCCAGTTCTTGAAACAAGGTCAGCAGAAGATATTGATTTGGCTTTTAAG
1 AGACTAATGTGGTGCTGCCAGTTCTTGAAGCAAGATCAGCAGAAGATATTGATTTGGCTTTTAAG
*
46625646 CAACTTCATGAAGGAGTCAATGTTGAGGAAGTAATTGTTCCGAGTATGATTGAGAAACTGCCAGA
66 CAACTTCATGAAGGAGTCGATGTTGAGGAAGTAATTGTTCCGAGTATGATTGAGAAAC-GCCAGA
* * * *
46625711 TCTTGGAGATAACAAATCAAAATTACCTGTTGTTGAGGCAAGATCTCTGGAGGATTTAGACAAAT
130 TCATGGAGATAACAAATCAAAATTACCTGTTGTTGAGGCAAGATCTCTGGAGGATATACACAAAG
* * *
46625776 CTATTCAACAACTTGCGAAACCTAAT-C-C-A-G-CATATTCTTCAGGCTCAAGGAATGAATCAT
195 CTATTCAACAACTTCCGAAACCTAATCCACGACGCCACATTCTTCAGGCTCAAAGAATGAATCAT
* *
46625836 CAAAAGATGCGAAGACCGAGACTAATGTGGTGCTGCC-AGTTCTTGAAGCAAGATCAGCAGAAGA
260 CAAAAGATACGAAAACCGAGACTAATGTGGTGCTGCCTA-TTCTTGAAGCAAGATCAGCAGAAGA
* *
46625900 TATTGATTTGGCTTTTAAGCAACTGCATGAAGGAG-CTGATGTTGAGGAAGTAATTGTTCCGAGT
324 TATTGATTTGACTTTTAAGCAACTGCATGAAGGAGTC-GATGTTGAGGAAGTAATTGTTCCAAGT
* * * *
46625964 ATGATTGAGAAACTGCCAGACCATGGAGATAACAAATCAAAATTACGTGTTGTCAAGGCAAGATC
388 ATGATCGAGAAACTGACAGACCATGGAGATAACAAATCAAAATTACCTATTGTCAAGGCAAGATC
* *
46626029 TCTGGAGGACATAGACAAAGCTATCCAACAACTTCCGAAATCTAATCCAGCTGAGCTGCCACATT
453 TCTGGAGGACATACACAAAGCTATCCAACAACTTCCGAAATCTAATCCAGCTGAGCCGCCACATT
* *
46626094 CTTCAGTTTCAAGGAATGAACCATCAAAAGATATGAAGACTG
518 CTTCAGCTTCAAGGAATGAACCATCAAAAGATACGAAGACTG
46626136 AGACTAATGTGGTGCTGCCAGTTCTTGAAGCAAGATCAGCAGAAGATATTGATTTGGCTTTTAAG
1 AGACTAATGTGGTGCTGCCAGTTCTTGAAGCAAGATCAGCAGAAGATATTGATTTGGCTTTTAAG
* * * *
46626201 CAACTGCATGAAGGAG-CTGATGTTGAGGAAGTAATTGTTCCAAGTATGATTGTGGAAC-CACAG
66 CAACTTCATGAAGGAGTC-GATGTTGAGGAAGTAATTGTTCCGAGTATGATTGAGAAACGC-CA-
* *** * *
46626264 GATGACACAGATAACAAATCAAAATTACCTGTTGTGGAGGCAAGATCTCTGAAGGA
128 GATCATGGAGATAACAAATCAAAATTACCTGTTGTTGAGGCAAGATCTCTGGAGGA
46626320 ATTACATAAT
Statistics
Matches: 658, Mismatches: 73, Indels: 25
0.87 0.10 0.03
Matches are distributed among these distances:
553 1 0.00
554 8 0.01
555 451 0.69
556 1 0.00
559 1 0.00
561 1 0.00
563 2 0.00
564 191 0.29
565 2 0.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.26
Consensus pattern (559 bp):
AGACTAATGTGGTGCTGCCAGTTCTTGAAGCAAGATCAGCAGAAGATATTGATTTGGCTTTTAAG
CAACTTCATGAAGGAGTCGATGTTGAGGAAGTAATTGTTCCGAGTATGATTGAGAAACGCCAGAT
CATGGAGATAACAAATCAAAATTACCTGTTGTTGAGGCAAGATCTCTGGAGGATATACACAAAGC
TATTCAACAACTTCCGAAACCTAATCCACGACGCCACATTCTTCAGGCTCAAAGAATGAATCATC
AAAAGATACGAAAACCGAGACTAATGTGGTGCTGCCTATTCTTGAAGCAAGATCAGCAGAAGATA
TTGATTTGACTTTTAAGCAACTGCATGAAGGAGTCGATGTTGAGGAAGTAATTGTTCCAAGTATG
ATCGAGAAACTGACAGACCATGGAGATAACAAATCAAAATTACCTATTGTCAAGGCAAGATCTCT
GGAGGACATACACAAAGCTATCCAACAACTTCCGAAATCTAATCCAGCTGAGCCGCCACATTCTT
CAGCTTCAAGGAATGAACCATCAAAAGATACGAAGACTG
Found at i:46628909 original size:18 final size:18
Alignment explanation
Indices: 46628895--46628935 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 18
46628885 TTTATTTTAT
46628895 TTTATTTTATTATTTCAG
1 TTTATTTTATTATTTCAG
46628913 TTTATTTTATAATATTT-AG
1 TTTATTTTAT--TATTTCAG
46628932 TTTA
1 TTTA
46628936 AAGTATTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 10 0.48
19 6 0.29
20 5 0.24
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (18 bp):
TTTATTTTATTATTTCAG
Found at i:46633176 original size:31 final size:31
Alignment explanation
Indices: 46633141--46633206 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
46633131 AACAAACTAG
*
46633141 TGACTTAAATAAAAAATTTTGAATAGCTCAA
1 TGACTTAAATAAAAAATTTCGAATAGCTCAA
* * * *
46633172 TGACTTAAATGAAAACTTTCGAATAGTTCAG
1 TGACTTAAATAAAAAATTTCGAATAGCTCAA
46633203 TGAC
1 TGAC
46633207 CAAAACAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (31 bp):
TGACTTAAATAAAAAATTTCGAATAGCTCAA
Found at i:46635045 original size:25 final size:25
Alignment explanation
Indices: 46635007--46635056 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
46634997 TTGAGTTAAT
46635007 AAAATTCTCTTTAAGTTTTCTTTTA
1 AAAATTCTCTTTAAGTTTTCTTTTA
46635032 AAAATT-TCTCTTAAGTTTTCTTTTA
1 AAAATTCTCT-TTAAGTTTTCTTTTA
46635057 GAAGAGTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 3 0.12
25 21 0.88
ACGTcount: A:0.28, C:0.12, G:0.04, T:0.56
Consensus pattern (25 bp):
AAAATTCTCTTTAAGTTTTCTTTTA
Found at i:46636445 original size:59 final size:58
Alignment explanation
Indices: 46636355--46636477 Score: 158
Period size: 59 Copynumber: 2.1 Consensus size: 58
46636345 TAGAAATGGT
* * *
46636355 AAAATCGAGAAATAGGAAACATTTGAGAATGATTACGGTTTTCTCCAAAATGAAAAATGA
1 AAAATCGAGAAATA-GAAACATTTGAAAATGAATACGATTTTCTCCAAAAT-AAAAATGA
* **
46636415 AAAATGGAGAAAT-GAAATCATTTGAAAATGAATGTGATTTTCTCCAAAATAAAAATGA
1 AAAATCGAGAAATAGAAA-CATTTGAAAATGAATACGATTTTCTCCAAAATAAAAATGA
46636473 AAAAT
1 AAAAT
46636478 AAAATTTCGA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
58 17 0.30
59 27 0.48
60 12 0.21
ACGTcount: A:0.50, C:0.08, G:0.16, T:0.26
Consensus pattern (58 bp):
AAAATCGAGAAATAGAAACATTTGAAAATGAATACGATTTTCTCCAAAATAAAAATGA
Found at i:46644064 original size:36 final size:36
Alignment explanation
Indices: 46644023--46644213 Score: 229
Period size: 36 Copynumber: 5.0 Consensus size: 36
46644013 GGTAGCTTTA
46644023 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
*
46644059 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTT
1 GCTACACTTATCTGATCAAGTGACAAAGTGAT-A-----AG---T
*
46644104 AGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 -GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
* * * *
46644141 GTTATACTTATCTGATCAAGTGAAAAAGTGGTAAGT
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
*
46644177 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
46644213 G
1 G
46644214 GTAGCTTAGC
Statistics
Matches: 136, Mismatches: 9, Indels: 20
0.82 0.05 0.12
Matches are distributed among these distances:
36 98 0.72
37 2 0.01
40 2 0.01
42 2 0.01
45 2 0.01
46 30 0.22
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
Found at i:46644097 original size:82 final size:82
Alignment explanation
Indices: 46643987--46644213 Score: 312
Period size: 82 Copynumber: 2.9 Consensus size: 82
46643977 TTTGAGTACT
* *
46643987 TCTGTTCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
46644052 GATAAGTGCTACACTTA
66 GATAAGTGCTACACTTA
* *
46644069 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
* *
46644134 GATAAGTGTTATACTTA
66 GATAAGTGCTACACTTA
* *
46644151 TCTGATCAAGTGAAAAAGTGGTAA---GT-GC--TA--T--ACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
46644206 GATAAGTG
66 GATAAGTG
46644214 GTAGCTTAGC
Statistics
Matches: 136, Mismatches: 9, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
72 31 0.23
74 1 0.01
76 2 0.01
78 2 0.01
79 2 0.01
82 98 0.72
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.30
Consensus pattern (82 bp):
TCTGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
GATAAGTGCTACACTTA
Found at i:46644177 original size:118 final size:117
Alignment explanation
Indices: 46644028--46644239 Score: 379
Period size: 118 Copynumber: 1.8 Consensus size: 117
46644018 CTTTAGCTAC
*
46644028 ACTTATCTGATCAAGTGACAAAGTGATAAGTGCTACACTTATCTGATCAAGAGACAAAGTGATAA
1 ACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACACTTATCTGATCAAGAGACAAAGTGATAA
46644093 GTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGTTAT
66 GTGGTAGC-TTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGTTAT
* * *
46644146 ACTTATCTGATCAAGTGAAAAAGTGGTAAGTGCTATACTTATCTGATCAAGTGACAAAGTGATAA
1 ACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACACTTATCTGATCAAGAGACAAAGTGATAA
46644211 GTGGTAGCTTAGCTACACTTATCTGATCA
66 GTGGTAGCTTAGCTACACTTATCTGATCA
46644240 GGGACAAATG
Statistics
Matches: 90, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
117 21 0.23
118 69 0.77
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.30
Consensus pattern (117 bp):
ACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACACTTATCTGATCAAGAGACAAAGTGATAA
GTGGTAGCTTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGTTAT
Found at i:46644206 original size:44 final size:43
Alignment explanation
Indices: 46644158--46644247 Score: 103
Period size: 45 Copynumber: 2.0 Consensus size: 43
46644148 TTATCTGATC
* *
46644158 AAGTGAAAAAGTGGTAAG-T-GCTATACTTATCTGATCAAGTGACA
1 AAGTG-AAAAGTGGT-AGCTAGCTACACTTATCTGATC-AGGGACA
*
46644202 AAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGGGACA
1 AAGTGAAAAGTGGTAGC-TAGCTACACTTATCTGATCAGGGACA
46644246 AA
1 AA
46644248 TGATAAGCGA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
42 2 0.05
43 8 0.20
44 14 0.35
45 16 0.40
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (43 bp):
AAGTGAAAAGTGGTAGCTAGCTACACTTATCTGATCAGGGACA
Found at i:46650795 original size:18 final size:19
Alignment explanation
Indices: 46650762--46650800 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
46650752 TAAATAGTTT
46650762 GAGTTATTCAAGTTAA-TC
1 GAGTTATTCAAGTTAACTC
46650780 GAGTTATTC-AGATTAACTC
1 GAGTTATTCAAG-TTAACTC
46650799 GA
1 GA
46650801 ATAAAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 2 0.11
18 13 0.68
19 4 0.21
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (19 bp):
GAGTTATTCAAGTTAACTC
Found at i:46650859 original size:15 final size:15
Alignment explanation
Indices: 46650839--46650869 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
46650829 CGAATATGAA
46650839 TTACACAATTCGAGT
1 TTACACAATTCGAGT
46650854 TTACACAATTCGAGT
1 TTACACAATTCGAGT
46650869 T
1 T
46650870 ATCCGAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (15 bp):
TTACACAATTCGAGT
Found at i:46653761 original size:23 final size:23
Alignment explanation
Indices: 46653718--46653767 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
46653708 TAGATTTAGT
**
46653718 TAAAAAAATAAATGTTAAAGTGA
1 TAAAAAAATAAACATTAAAGTGA
*
46653741 TAAAAAATATAAACATT-AAGTGT
1 TAAAAAA-ATAAACATTAAAGTGA
46653764 TAAA
1 TAAA
46653768 TTTATCTCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 16 0.70
24 7 0.30
ACGTcount: A:0.60, C:0.02, G:0.10, T:0.28
Consensus pattern (23 bp):
TAAAAAAATAAACATTAAAGTGA
Found at i:46654573 original size:11 final size:12
Alignment explanation
Indices: 46654553--46654604 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 12
46654543 AATATTACAA
46654553 AATTTAAAAAAT
1 AATTTAAAAAAT
46654565 AATTTAAAAATGAT
1 AATTTAAAAA--AT
46654579 AAATTTACAAAAA-
1 -AATTTA-AAAAAT
*
46654592 AATGTAAAAAAT
1 AATTTAAAAAAT
46654604 A
1 A
46654605 TCAAACATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
11 5 0.15
12 16 0.47
14 3 0.09
15 6 0.18
16 4 0.12
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (12 bp):
AATTTAAAAAAT
Found at i:46654574 original size:20 final size:19
Alignment explanation
Indices: 46654465--46654658 Score: 89
Period size: 19 Copynumber: 10.3 Consensus size: 19
46654455 TGACCAGTCC
*
46654465 AAAAAGTATTAAAAA-TAT
1 AAAAAATATTAAAAATTAT
*
46654483 AAAAAAATATTTAGAAATTAT
1 -AAAAAATA-TTAAAAATTAT
* * * * *
46654504 AGAAATTTTTATAAATTCT
1 AAAAAATATTAAAAATTAT
46654523 -AAAAA-A-TAAAAATTAT
1 AAAAAATATTAAAAATTAT
*
46654539 TAAAAATATTACAAAATT-T
1 AAAAAATATTA-AAAATTAT
*
46654558 AAAAAATAATTTAAAAATGAT
1 AAAAAAT-A-TTAAAAATTAT
** ** * *
46654579 -AAATTTACAAAAAAATGT
1 AAAAAATATTAAAAATTAT
* *
46654597 AAAAAATATCAAACATTAT
1 AAAAAATATTAAAAATTAT
* *
46654616 CAAAAAT-TGAAAAATTAT
1 AAAAAATATTAAAAATTAT
*
46654634 AAAAAAATTAGTAAAAATT-T
1 -AAAAAA-TATTAAAAATTAT
46654654 AAAAA
1 AAAAA
46654659 TAAAAATATT
Statistics
Matches: 128, Mismatches: 34, Indels: 26
0.68 0.18 0.14
Matches are distributed among these distances:
16 8 0.06
17 5 0.04
18 19 0.15
19 53 0.41
20 29 0.23
21 14 0.11
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (19 bp):
AAAAAATATTAAAAATTAT
Found at i:46657537 original size:13 final size:13
Alignment explanation
Indices: 46657519--46657549 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
46657509 ATCATGGCAG
46657519 TGAAGTAGGTTGT
1 TGAAGTAGGTTGT
46657532 TGAAGTAGGTTGT
1 TGAAGTAGGTTGT
46657545 TGAAG
1 TGAAG
46657550 GTTACCATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.39, T:0.35
Consensus pattern (13 bp):
TGAAGTAGGTTGT
Found at i:46659966 original size:40 final size:40
Alignment explanation
Indices: 46659883--46660068 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
46659873 TTGAATGATG
* * * *
46659883 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
*
46659923 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46659963 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46660003 TCCGGGTTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
46660044 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46660069 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.91
41 11 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46660075 original size:80 final size:79
Alignment explanation
Indices: 46659936--46660103 Score: 223
Period size: 80 Copynumber: 2.1 Consensus size: 79
46659926 GGACTAAGAT
* * **
46659936 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGTATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
*
46660000 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
*
46660016 CCGAAGGTATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGTATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
* *
46660080 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
46660095 CCGAAGGTA
1 CCGAAGGTA
46660104 CGTGATTTGG
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
79 18 0.23
80 58 0.74
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGTATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:46662069 original size:13 final size:13
Alignment explanation
Indices: 46662051--46662081 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
46662041 ATCATGGCAG
46662051 TGAAGTAGGTTGT
1 TGAAGTAGGTTGT
46662064 TGAAGTAGGTTGT
1 TGAAGTAGGTTGT
46662077 TGAAG
1 TGAAG
46662082 GTTACCATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.39, T:0.35
Consensus pattern (13 bp):
TGAAGTAGGTTGT
Found at i:46682118 original size:17 final size:16
Alignment explanation
Indices: 46682073--46682126 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
46682063 AGGCAACCCA
* *
46682073 ATTTTTATTTTTATTT
1 ATTTTTACTTTAATTT
*
46682089 ATTTTTTCTTTAATTT
1 ATTTTTACTTTAATTT
46682105 ATTTATTACTTTAATTT
1 ATTT-TTACTTTAATTT
46682122 ATTTT
1 ATTTT
46682127 ATTTTATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
16 18 0.55
17 15 0.45
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (16 bp):
ATTTTTACTTTAATTT
Found at i:46687673 original size:28 final size:28
Alignment explanation
Indices: 46687641--46687721 Score: 76
Period size: 28 Copynumber: 2.9 Consensus size: 28
46687631 CGGCAGCAGA
*
46687641 TAGGACATAATAAAAACATGTTTTA-GT
1 TAGGACATAATAAAAACATGTATTAGGT
* *
46687668 CTAGGA-AAAATTAATAACATGTATTAGGT
1 -TAGGACATAA-TAAAAACATGTATTAGGT
* * *
46687697 TATGACATATTAAAAACTTGTATTA
1 TAGGACATAATAAAAACATGTATTA
46687722 AAATAAGACA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
27 3 0.07
28 35 0.83
29 4 0.10
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.35
Consensus pattern (28 bp):
TAGGACATAATAAAAACATGTATTAGGT
Found at i:46687731 original size:28 final size:29
Alignment explanation
Indices: 46687700--46687761 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 29
46687690 ATTAGGTTAT
* *
46687700 GACATATTAAAAACTT-GTATTAAAATAA
1 GACATATTAAAAACTTAATAATAAAATAA
* * *
46687728 GACACATTAAACACTTAATAATAAAATCA
1 GACATATTAAAAACTTAATAATAAAATAA
46687757 GACAT
1 GACAT
46687762 TTATTTTATT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
28 14 0.52
29 13 0.48
ACGTcount: A:0.53, C:0.13, G:0.06, T:0.27
Consensus pattern (29 bp):
GACATATTAAAAACTTAATAATAAAATAA
Found at i:46694121 original size:24 final size:19
Alignment explanation
Indices: 46694071--46694109 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
46694061 TGCAGTTTTT
46694071 AAGTACAATGCTACAGTTC
1 AAGTACAATGCTACAGTTC
46694090 AAGTACAATGCTACAGTTC
1 AAGTACAATGCTACAGTTC
46694109 A
1 A
46694110 CAATGTGTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (19 bp):
AAGTACAATGCTACAGTTC
Found at i:46696876 original size:27 final size:27
Alignment explanation
Indices: 46696830--46696892 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
46696820 GTTGAACCAA
*
46696830 TGTTTACTGTCCAGGTGGACTACTCC-G
1 TGTTTACTGTCCAGGAGGACTAC-CCTG
** *
46696857 TGTTTACTGTCTTGGAGGACTACCCTT
1 TGTTTACTGTCCAGGAGGACTACCCTG
46696884 TGTTTACTG
1 TGTTTACTG
46696893 AATTCGAGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.06
27 29 0.94
ACGTcount: A:0.14, C:0.22, G:0.24, T:0.40
Consensus pattern (27 bp):
TGTTTACTGTCCAGGAGGACTACCCTG
Done.