Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 151 of 226
Found at i:47372503 original size:28 final size:28
Alignment explanation
Indices: 47372409--47372540 Score: 130
Period size: 28 Copynumber: 4.9 Consensus size: 28
47372399 TAATTTTTGT
* *
47372409 AAAATAGGGG-AAAATTTACAAAATTTAA
1 AAAATAGGGGCAAAA-CTATAAAATTTAA
*
47372437 AAAA-ATGGGCAAAACTATAAAA--T-A
1 AAAATAGGGGCAAAACTATAAAATTTAA
*
47372461 AAAATAGGGGTAAAACTATAAAATTTAA
1 AAAATAGGGGCAAAACTATAAAATTTAA
** *
47372489 AAAATAAAGGCAAAACTATAAAATCTAA
1 AAAATAGGGGCAAAACTATAAAATTTAA
* * *
47372517 AAAATAGTGGCAAAATTGTAAAAT
1 AAAATAGGGGCAAAACTATAAAAT
47372541 CTGAAAAACA
Statistics
Matches: 86, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
24 5 0.06
25 17 0.20
27 11 0.13
28 53 0.62
ACGTcount: A:0.59, C:0.06, G:0.13, T:0.22
Consensus pattern (28 bp):
AAAATAGGGGCAAAACTATAAAATTTAA
Found at i:47372541 original size:28 final size:28
Alignment explanation
Indices: 47372436--47372554 Score: 122
Period size: 28 Copynumber: 4.4 Consensus size: 28
47372426 ACAAAATTTA
47372436 AAAAAAT-G-GGCAAAACTATAAAA--T
1 AAAAAATAGAGGCAAAACTATAAAATCT
* * *
47372460 -AAAAATAGGGGTAAAACTATAAAATTT
1 AAAAAATAGAGGCAAAACTATAAAATCT
*
47372487 AAAAAATAAAGGCAAAACTATAAAATCT
1 AAAAAATAGAGGCAAAACTATAAAATCT
* * *
47372515 AAAAAATAGTGGCAAAATTGTAAAATCT
1 AAAAAATAGAGGCAAAACTATAAAATCT
* *
47372543 GAAAAACAGAGG
1 AAAAAATAGAGG
47372555 ACACATGGCC
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
23 6 0.08
24 1 0.01
25 14 0.18
27 1 0.01
28 56 0.72
ACGTcount: A:0.59, C:0.08, G:0.14, T:0.19
Consensus pattern (28 bp):
AAAAAATAGAGGCAAAACTATAAAATCT
Found at i:47372967 original size:84 final size:84
Alignment explanation
Indices: 47372824--47373029 Score: 308
Period size: 84 Copynumber: 2.4 Consensus size: 84
47372814 TTATAGAAAT
* *
47372824 AAACGCGTCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCCTACAAACGTCGTTAAAGGTCATGTT
1 AAACGCG-CTAAAGGTCATGTTCTTTAGCGGCGCTTTCCCTACAAACGTCGCTAAAGGTCATGTT
*
47372889 CTTTAGCGGTGCTTTTCCCAC
65 CTTTAGCGGCGC-TTTCCCAC
* *
47372910 AAACGCTGCTAAAGGTCATGTT-TTTAGCGTCTCTTTCCCT-CAAACGTCGCTAAAGGTCATGTT
1 AAACGC-GCTAAAGGTCATGTTCTTTAGCGGCGCTTTCCCTACAAACGTCGCTAAAGGTCATGTT
47372973 CTTTAGCGGCGCTTTCCCAC
65 CTTTAGCGGCGCTTTCCCAC
*
47372993 AAACGCCGCTAAAGGTCATGTTCTTTAGCGACGCTTT
1 AAACG-CGCTAAAGGTCATGTTCTTTAGCGGCGCTTT
47373030 TCTCACAAAC
Statistics
Matches: 110, Mismatches: 7, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
83 28 0.25
84 46 0.42
85 15 0.14
86 20 0.18
87 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (84 bp):
AAACGCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTCCCTACAAACGTCGCTAAAGGTCATGTTC
TTTAGCGGCGCTTTCCCAC
Found at i:47372978 original size:42 final size:41
Alignment explanation
Indices: 47372824--47373041 Score: 285
Period size: 43 Copynumber: 5.1 Consensus size: 41
47372814 TTATAGAAAT
*
47372824 AAACGCGTCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCCTAC
1 AAACGCG-CTAAAGGTCATGTTCTTTAGCGGCGC-TTTCCCAC
* *
47372867 AAACGTCGTTAAAGGTCATGTTCTTTAGCGGTGCTTTTCCCAC
1 AAACG-CGCTAAAGGTCATGTTCTTTAGCGGCGC-TTTCCCAC
* * *
47372910 AAACGCTGCTAAAGGTCATGTT-TTTAGCGTCTCTTTCCCTC
1 AAACGC-GCTAAAGGTCATGTTCTTTAGCGGCGCTTTCCCAC
47372951 AAACGTCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTCCCAC
1 AAACG-CGCTAAAGGTCATGTTCTTTAGCGGCGCTTTCCCAC
* *
47372993 AAACGCCGCTAAAGGTCATGTTCTTTAGCGACGCTTTTCTCAC
1 AAACG-CGCTAAAGGTCATGTTCTTTAGCGGCGC-TTTCCCAC
47373036 AAACGC
1 AAACGC
47373042 CGCTTGTAAC
Statistics
Matches: 156, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
41 27 0.17
42 59 0.38
43 68 0.44
44 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (41 bp):
AAACGCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTCCCAC
Found at i:47374540 original size:28 final size:29
Alignment explanation
Indices: 47374508--47374606 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
47374498 ATAATAAGCC
*
47374508 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
47374536 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
47374564 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
47374593 CGCACACTTAGTGC
1 CGCACACTTAGTGC
47374607 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:47380792 original size:40 final size:39
Alignment explanation
Indices: 47380708--47380892 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
47380698 TTGAATGATG
* * * *
47380708 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
47380748 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
47380788 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
47380827 TCCGGGTTAAGTCCTGAAGGTAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTA-AA
*
47380868 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
47380893 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 37 0.31
40 72 0.60
41 12 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:47380846 original size:79 final size:81
Alignment explanation
Indices: 47380708--47380892 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
47380698 TTGAATGATG
* *
47380708 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
47380772 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * ** *
47380787 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCTGAAGGTA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCC-GAAGGCA
*
47380849 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
47380867 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
47380893 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.60
80 33 0.37
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:47380914 original size:79 final size:78
Alignment explanation
Indices: 47380709--47380925 Score: 192
Period size: 79 Copynumber: 2.7 Consensus size: 78
47380699 TGAATGATGT
** * * * * *
47380709 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTTACTATATCCGG-TTAAGATCCGAAGGCAATT
*
47380773 GTGCGAGATACTAATT
63 GTGCGAGATACTAATA
** * *
47380789 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCTGAAGGTAATTG
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTATATCC-GGTTAAGATCC-GAAGGCAATTG
*
47380853 TGCGAGTTACT-ATAA
64 TGCGAGATACTAAT-A
*
47380868 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAA-ATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTATATCCGGTTAAGA-TCCGAAGG
47380926 TACGTGATTT
Statistics
Matches: 116, Mismatches: 13, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
78 5 0.04
79 64 0.55
80 47 0.41
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTATATCCGGTTAAGATCCGAAGGCAATTGTG
CGAGATACTAATA
Found at i:47384785 original size:28 final size:29
Alignment explanation
Indices: 47384753--47384851 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
47384743 ATAATAAGCC
*
47384753 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
47384781 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
47384809 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
47384838 CGCACACTTAGTGC
1 CGCACACTTAGTGC
47384852 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:47386902 original size:21 final size:21
Alignment explanation
Indices: 47386878--47386932 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
47386868 TTCTGCTCTG
* *
47386878 CTCTGCTTCCCTTGCTGCAGC
1 CTCTGCTTCCCTCGCTACAGC
*
47386899 CTCTGCTTCTCTCGCTACAGC
1 CTCTGCTTCCCTCGCTACAGC
47386920 CTCTGCTTCCCTC
1 CTCTGCTTCCCTC
47386933 ATTGCTGCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.05, C:0.45, G:0.15, T:0.35
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTACAGC
Found at i:47390445 original size:232 final size:234
Alignment explanation
Indices: 47390012--47390472 Score: 635
Period size: 232 Copynumber: 2.0 Consensus size: 234
47390002 AAATAAATAA
* * * **
47390012 TTCTAAAATTTTTCTAAGTTAAAAATCGTTTACGGAAACGGCGTCATTTAGCCATTACTTTAATA
1 TTCTAAAATTTTTCTAAGTTAAAAATCGTATACAGAAACGACACCATTTAGCCATTACTTTAATA
* * * *
47390077 CCCTTTTGCGGTGTTTTCGGTACAAACGCCGCTATTGCTTCCACAGTTCTGGCATTTTTCCTAAA
66 CCCTTTTGCGGCGTTTTCGGTAAAAACGCCGCTATTGCTTACACAATTCTGGCATTTTTCCTAAA
* * * * * * *
47390142 AATGCCACTAAATATTAAAGTTGTAAAGGGAAACGGCGTCGTTTTTTTGGTCTCAAATTGCATTG
131 AACGCCACTAAATATTAAAGTTGTAAAGAGAAACGACGCCGTTTTGTTAGTCTCAAATTGCATTA
*
47390207 TTTCTGGCGTTTTATGTAAAAACGCCACTAATACTTAGT
196 TTTCTGGCATTTTATGTAAAAACGCCACTAATACTTAGT
* *
47390246 TTCTAAAATTTTTCTAAGTTAAAAATCGTATACAGAAACGACACCGTTTA-CACATTATTTTAAT
1 TTCTAAAATTTTTCTAAGTTAAAAATCGTATACAGAAACGACACCATTTAGC-CATTACTTTAAT
* *
47390310 A-CCTTTTGCGGCGTTTTCTGTAAAAACGCCGCTATTGCTTACACATATTC-GGCGTTTTT-CTA
65 ACCCTTTTGCGGCGTTTTCGGTAAAAACGCCGCTATTGCTTACACA-ATTCTGGCATTTTTCCTA
* * *
47390372 AAAACGCCACTAAA-AGTTCAAGTTTTAAATAGAAACGACGCCGTTTTGTTAGTCTCAAATTGCA
129 AAAACGCCACTAAATA-TTAAAGTTGTAAAGAGAAACGACGCCGTTTTGTTAGTCTCAAATTGCA
*
47390436 TTATTTCTGGCATTTTATGTAAAAACGCCTCTAATAC
193 TTATTTCTGGCATTTTATGTAAAAACGCCACTAATAC
47390473 CTAATTTACT
Statistics
Matches: 199, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
231 1 0.01
232 90 0.45
233 49 0.25
234 59 0.30
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (234 bp):
TTCTAAAATTTTTCTAAGTTAAAAATCGTATACAGAAACGACACCATTTAGCCATTACTTTAATA
CCCTTTTGCGGCGTTTTCGGTAAAAACGCCGCTATTGCTTACACAATTCTGGCATTTTTCCTAAA
AACGCCACTAAATATTAAAGTTGTAAAGAGAAACGACGCCGTTTTGTTAGTCTCAAATTGCATTA
TTTCTGGCATTTTATGTAAAAACGCCACTAATACTTAGT
Found at i:47391009 original size:270 final size:265
Alignment explanation
Indices: 47390246--47390991 Score: 854
Period size: 270 Copynumber: 2.8 Consensus size: 265
47390236 AATACTTAGT
* * ** *
47390246 TTCTAAAATTTTTCTAAGTTAAAAATCGTATACAGAAACGACACCGTTTACACATTATTTTAATA
1 TTCT-AAATTTTTCTAAGTTAAAAATCGTGTACAGAAACGGCGTCGTTTACACAATATTTTAATA
* * *
47390311 CCTTTTGCGGCGTTTTCTGTAAAAACGCCGCTATTGCTTACACATATTCGGCGTTTTTCTAAAAA
65 CCTTTTGCGGCGTTTTCTGTAAAAACGCCACTATTGCTTCCACAT-TTCGGCGTTTTACTAAAAA
* * * *
47390376 CGCCACTAAAAGTTCAAGTTTTAAATAGAAACGACGCCGTTTTGTTAGTCTCAAATTGCATTATT
129 CGCCACTAAAAGTTTAAG-TTTAAATAGAAACGGCGCCGTTTTCTTAGTCTCAAATTGCA-TAGT
* * ** *
47390441 TCTGGCATTTTATGTAAAAACGCCTCTAATACCTAATTTACTTTAACCCAAACGGTGATGTTTTA
192 TCTGGCGTTTTATGTAAAAACGCCACTAATACCTAACGTACTTTAACCCAAACGGTGACGTTTTA
47390506 AATAAATAA
257 AATAAATAA
* * * *
47390515 TTCTCAAATTTTTCTAAGTTAAAAATCGTGTATAGAAATGGCGTCGTTTAGACACTATTTTAATA
1 TTCT-AAATTTTTCTAAGTTAAAAATCGTGTACAGAAACGGCGTCGTTTACACAATATTTTAATA
* * * * * * *
47390580 CCCTTTTGCGGCGTTTACTGTACAAACGCCACTATTGCTTCCAAAGTTCCGGTGTTTTGCCAAAA
65 -CCTTTTGCGGCGTTTTCTGTAAAAACGCCACTATTGCTTCCACA-TTTCGGCGTTTTACTAAAA
* *
47390645 ACGCCAC-AAAAATTTAAAGTTGTAAATAGAAACGGCGCCGTTTTGC-TAGTCTCAAATTGCATT
128 ACGCCACTAAAAGTTT-AAGTT-TAAATAGAAACGGCGCCGTTTT-CTTAGTCTCAAATTGCATA
* * *
47390708 GTTTCTGGCGTTTTATGTAAAAACGCCACTAATACTTAACGTACTTTAAGCCAAACTGTGACGTT
190 G-TTCTGGCGTTTTATGTAAAAACGCCACTAATACCTAACGTACTTTAACCCAAACGGTGACGTT
*
47390773 TTAAGTAAATAA
254 TTAAATAAATAA
* * * * * *
47390785 TTCTAAACTTTTTATAAGTTAAAAATCGTGGAGAGAAACGGCGTCGTTTACTCAAAATTTTAAGA
1 TTCTAAA-TTTTTCTAAGTTAAAAATCGTGTACAGAAACGGCGTCGTTTACACAATATTTTAATA
* * * *
47390850 CACTTTTGCGGCATTTTTTGTAAAAACGCCACTAATGCATTCCACATTTCTGGCGTTTTAATAAA
65 C-CTTTTGCGGCGTTTTCTGTAAAAACGCCACTATTGC-TTCCACATTTC-GGCGTTTTACTAAA
* * * *
47390915 AACGCCACTAAAAGTTTAACTATTCATTCAGAAACGGCACCGTTTTCTTAAG-CT-ATAA-TGCA
127 AACGCCACTAAAAGTTTAAGT-TTAAAT-AGAAACGGCGCCGTTTTCTT-AGTCTCA-AATTGCA
47390977 TAGTTCTGGCGTTTT
188 TAGTTCTGGCGTTTT
47390992 CTTTGATAAC
Statistics
Matches: 402, Mismatches: 59, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
269 69 0.17
270 263 0.65
271 39 0.10
272 29 0.07
273 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.35
Consensus pattern (265 bp):
TTCTAAATTTTTCTAAGTTAAAAATCGTGTACAGAAACGGCGTCGTTTACACAATATTTTAATAC
CTTTTGCGGCGTTTTCTGTAAAAACGCCACTATTGCTTCCACATTTCGGCGTTTTACTAAAAACG
CCACTAAAAGTTTAAGTTTAAATAGAAACGGCGCCGTTTTCTTAGTCTCAAATTGCATAGTTCTG
GCGTTTTATGTAAAAACGCCACTAATACCTAACGTACTTTAACCCAAACGGTGACGTTTTAAATA
AATAA
Found at i:47391386 original size:22 final size:23
Alignment explanation
Indices: 47391344--47391394 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
47391334 CTTAAATCAT
* *
47391344 TAACCCATTAAACCCTTAACCCG
1 TAACCCATTAAACCCTAAACCCC
*
47391367 TAACCC-TTAAATCCTAAACCCC
1 TAACCCATTAAACCCTAAACCCC
47391389 TAACCC
1 TAACCC
47391395 CTAACCCTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
22 19 0.76
23 6 0.24
ACGTcount: A:0.35, C:0.41, G:0.02, T:0.22
Consensus pattern (23 bp):
TAACCCATTAAACCCTAAACCCC
Found at i:47391394 original size:29 final size:29
Alignment explanation
Indices: 47391352--47391415 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
47391342 ATTAACCCAT
* *
47391352 TAAACCCTTAACCCGTAACCCTTAAATCC
1 TAAACCCCTAACCCCTAACCCTTAAATCC
*
47391381 TAAACCCCTAACCCCTAACCCTTATATCC
1 TAAACCCCTAACCCCTAACCCTTAAATCC
*
47391410 CAAACC
1 TAAACC
47391416 TTAAATCCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.34, C:0.42, G:0.02, T:0.22
Consensus pattern (29 bp):
TAAACCCCTAACCCCTAACCCTTAAATCC
Found at i:47391397 original size:15 final size:15
Alignment explanation
Indices: 47391352--47391404 Score: 56
Period size: 14 Copynumber: 3.7 Consensus size: 15
47391342 ATTAACCCAT
*
47391352 TAAACCCTTAACCCG
1 TAAACCCTTAACCCC
**
47391367 T-AACCCTTAAATCC
1 TAAACCCTTAACCCC
*
47391381 TAAACCCCTAACCCC
1 TAAACCCTTAACCCC
47391396 T-AACCCTTA
1 TAAACCCTTA
47391405 TATCCCAAAC
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
14 18 0.60
15 12 0.40
ACGTcount: A:0.34, C:0.42, G:0.02, T:0.23
Consensus pattern (15 bp):
TAAACCCTTAACCCC
Found at i:47391633 original size:35 final size:36
Alignment explanation
Indices: 47391561--47391636 Score: 95
Period size: 36 Copynumber: 2.1 Consensus size: 36
47391551 CAATATTATC
**
47391561 TTTATAATATTTATTTTATTTGTATAAAGTTTGAAA
1 TTTATAATATTTATTTTATTTGTATAAAGAATGAAA
47391597 TTTATAATATTTTATTTTA-TTG-ATAAAAGAAT-AAA
1 TTTATAATA-TTTATTTTATTTGTAT-AAAGAATGAAA
47391632 TTTAT
1 TTTAT
47391637 CTAATTAACT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
35 10 0.28
36 17 0.47
37 9 0.25
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (36 bp):
TTTATAATATTTATTTTATTTGTATAAAGAATGAAA
Found at i:47392685 original size:82 final size:82
Alignment explanation
Indices: 47392588--47392738 Score: 205
Period size: 83 Copynumber: 1.8 Consensus size: 82
47392578 GCACTTTAAC
* * * * * *
47392588 AAAACGCCGCTAAAACCCCTAGAATTAGCGGCGGTTA-CTAAAAAAGCCGCTAAAAGTCTGAGCA
1 AAAACGCAGCTAAAACCCCGAGAATTAGCGGCGCTTACCTAAAAAAGCAGCTAAAAGCCAGAGCA
47392652 TTAGTGGCGCTTAATAA
66 TTAGTGGCGCTTAATAA
* * *
47392669 AAAACGCAGCTAAAAACCCCGAGCATTAGCGGCGCTTACCTAAAAACGCAGCTAATAGCCAGAGC
1 AAAACGCAGCT-AAAACCCCGAGAATTAGCGGCGCTTACCTAAAAAAGCAGCTAAAAGCCAGAGC
47392734 ATTAG
65 ATTAG
47392739 CGACGCTACG
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
81 10 0.17
82 23 0.39
83 26 0.44
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.17
Consensus pattern (82 bp):
AAAACGCAGCTAAAACCCCGAGAATTAGCGGCGCTTACCTAAAAAAGCAGCTAAAAGCCAGAGCA
TTAGTGGCGCTTAATAA
Found at i:47392703 original size:42 final size:41
Alignment explanation
Indices: 47392588--47392758 Score: 159
Period size: 41 Copynumber: 4.2 Consensus size: 41
47392578 GCACTTTAAC
* * * *
47392588 AAAACGCCGCTAAAACCCCTAGAATTAGCGGCGGTTACTAA
1 AAAACGCAGCTAAAACCCCGAGCATTAGCGGCGCTTACTAA
* ** * * *
47392629 AAAA-GCCGCTAAAAGTCTGAGCATTAGTGGCGCTTAATAA
1 AAAACGCAGCTAAAACCCCGAGCATTAGCGGCGCTTACTAA
47392669 AAAACGCAGCTAAAAACCCCGAGCATTAGCGGCGCTTACCT-A
1 AAAACGCAGCT-AAAACCCCGAGCATTAGCGGCGCTTA-CTAA
* * * * *
47392711 AAAACGCAGCTAATAGCCAGAGCATTAGCGACGC-TACGATA
1 AAAACGCAGCTAAAACCCCGAGCATTAGCGGCGCTTACTA-A
47392752 AAAACGC
1 AAAACGC
47392759 CACTAATTCC
Statistics
Matches: 106, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
39 1 0.01
40 34 0.32
41 36 0.34
42 34 0.32
43 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.16
Consensus pattern (41 bp):
AAAACGCAGCTAAAACCCCGAGCATTAGCGGCGCTTACTAA
Found at i:47393062 original size:123 final size:123
Alignment explanation
Indices: 47392758--47393085 Score: 451
Period size: 123 Copynumber: 2.7 Consensus size: 123
47392748 GATAAAAACG
* * ** *
47392758 CCACTAATTCCCACGAAAGGCCACCAAACGACGCCGTTGGCTTTTATTATTTGCGGTGTTTTCCT
1 CCACTAAATCCCCCGAAAGGCCACCAAACGACGCCGTTGGCTTTTATTATTTGCGGCATTTTCCC
* ** *
47392823 GAAAAACGCCACTAATGGTTATCTTTGGCGGCGTTTTTATGGAAACGCCGCTAATGCT
66 GAAAAACGCCACTAATGGATATCTTTGGCGGCAATTTTAGGGAAACGCCGCTAATGCT
*
47392881 CCACTAAATCCCCCCGAAAGGCCACCAAACGACGCCGTTGGCTTTTATTATTTACGGCATTTTCC
1 CCACTAAAT-CCCCCGAAAGGCCACCAAACGACGCCGTTGGCTTTTATTATTTGCGGCATTTTCC
* * * *
47392946 CGAAAAACGCCATTAAT-GATATTTTTTGCGGCAATTTTAGGGTAACGCCGCTAATGCT
65 CGAAAAACGCCACTAATGGATATCTTTGGCGGCAATTTTAGGGAAACGCCGCTAATGCT
* * **
47393004 CCACTAAATCCCCCGAAAGGCCACTAAACGACGCCGTTGGGTTTTATTATTTTGCGGCATTTTTG
1 CCACTAAATCCCCCGAAAGGCCACCAAACGACGCCGTTGGCTTTTATTA-TTTGCGGCATTTTCC
* *
47393069 CTAAAAACGTCACTAAT
65 CGAAAAACGCCACTAAT
47393086 CCTTTTTCTT
Statistics
Matches: 181, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
122 38 0.21
123 77 0.43
124 66 0.36
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (123 bp):
CCACTAAATCCCCCGAAAGGCCACCAAACGACGCCGTTGGCTTTTATTATTTGCGGCATTTTCCC
GAAAAACGCCACTAATGGATATCTTTGGCGGCAATTTTAGGGAAACGCCGCTAATGCT
Found at i:47393247 original size:15 final size:17
Alignment explanation
Indices: 47393227--47393259 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
47393217 TTGGTAGAGA
47393227 ATTGATTT-AT-TCGAG
1 ATTGATTTGATATCGAG
47393242 ATTGATTTGATATCGAG
1 ATTGATTTGATATCGAG
47393259 A
1 A
47393260 GAAAAAATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 2 0.12
17 6 0.38
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.42
Consensus pattern (17 bp):
ATTGATTTGATATCGAG
Found at i:47394495 original size:3 final size:3
Alignment explanation
Indices: 47394487--47394513 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
47394477 TGTTAATTAC
47394487 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
47394514 TCTGATGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:47396833 original size:28 final size:28
Alignment explanation
Indices: 47396797--47396850 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
47396787 TGTATCAACC
47396797 ATTTCTCCTTTCGACACCTATCCAAATA
1 ATTTCTCCTTTCGACACCTATCCAAATA
* **
47396825 ATTTTTCCTTTTTACACCTATCCAAA
1 ATTTCTCCTTTCGACACCTATCCAAA
47396851 AAACAAAGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.28, C:0.30, G:0.02, T:0.41
Consensus pattern (28 bp):
ATTTCTCCTTTCGACACCTATCCAAATA
Found at i:47397824 original size:23 final size:22
Alignment explanation
Indices: 47397786--47397828 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
47397776 GATTGATTAT
47397786 GTTAAATTTTAATATAATTAACC
1 GTTAAATTTTAATAT-ATTAACC
**
47397809 GTTAAATTTTTTTATATTAA
1 GTTAAATTTTAATATATTAA
47397829 TAATTAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.51
Consensus pattern (22 bp):
GTTAAATTTTAATATATTAACC
Found at i:47398089 original size:23 final size:20
Alignment explanation
Indices: 47398059--47398101 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 20
47398049 AAAATAGGGA
47398059 AAAAACAACAAGAAAATAATATT
1 AAAAACAA-AA-AAAA-AATATT
47398082 AAAAACAAAAAAAAAATATT
1 AAAAACAAAAAAAAAATATT
47398102 TTTTTGTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 4 0.20
22 2 0.10
23 8 0.40
ACGTcount: A:0.74, C:0.07, G:0.02, T:0.16
Consensus pattern (20 bp):
AAAAACAAAAAAAAAATATT
Found at i:47400105 original size:20 final size:20
Alignment explanation
Indices: 47400080--47400126 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
47400070 CGTAATGGAT
47400080 GAATGGACGAATTGAACGAG
1 GAATGGACGAATTGAACGAG
*
47400100 GAATGGACGAATTGGACGAG
1 GAATGGACGAATTGAACGAG
47400120 GAATGGA
1 GAATGGA
47400127 GTTACCAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.38, C:0.09, G:0.38, T:0.15
Consensus pattern (20 bp):
GAATGGACGAATTGAACGAG
Found at i:47404838 original size:19 final size:19
Alignment explanation
Indices: 47404814--47404851 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
47404804 TTGGCCATGT
47404814 AACCCTTCCACACAGCCTC
1 AACCCTTCCACACAGCCTC
*
47404833 AACCCTTTCACACAGCCTC
1 AACCCTTCCACACAGCCTC
47404852 GAGTCACGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.50, G:0.05, T:0.18
Consensus pattern (19 bp):
AACCCTTCCACACAGCCTC
Found at i:47406403 original size:27 final size:27
Alignment explanation
Indices: 47406330--47406471 Score: 124
Period size: 29 Copynumber: 5.0 Consensus size: 27
47406320 TACGACCATG
* *
47406330 TGCCCCTATTTTTCAGATTTTACAATTT
1 TGCCCCTATTTTT-AGATTTTATACTTT
**
47406358 TGCCTATTATTTTTAGATTTTATACTTT
1 TGCC-CCTATTTTTAGATTTTATACTTT
* *
47406386 TGCCCCTATTTTTAGATTTTACAGTTT
1 TGCCCCTATTTTTAGATTTTATACTTT
47406413 TGCCCCTATTTTTTTAGATTTT-TACAATTT
1 TGCCCCTA--TTTTTAGATTTTATAC--TTT
* * *
47406443 TGACCTTATTTTTCAAATTTTATAGCTTT
1 TGCCCCTATTTTT-AGATTTTATA-CTTT
47406472 ACCTAAAATT
Statistics
Matches: 93, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
27 27 0.29
28 26 0.28
29 28 0.30
30 11 0.12
31 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.08, T:0.55
Consensus pattern (27 bp):
TGCCCCTATTTTTAGATTTTATACTTT
Found at i:47406454 original size:29 final size:28
Alignment explanation
Indices: 47406330--47406464 Score: 141
Period size: 27 Copynumber: 4.8 Consensus size: 28
47406320 TACGACCATG
*
47406330 TGCCCCTATTTTTCAGATTTTACAATTT
1 TGCCCCTATTTTTTAGATTTTACAATTT
* *
47406358 TG--CCTATTATTTTTAGATTTTATACTTT
1 TGCCCCTA-T-TTTTTAGATTTTACAATTT
*
47406386 TGCCCCTA-TTTTTAGATTTTACAGTTT
1 TGCCCCTATTTTTTAGATTTTACAATTT
47406413 TGCCCCTATTTTTTTAGATTTTTACAATTT
1 TGCCCCTA-TTTTTTAGA-TTTTACAATTT
* * * *
47406443 TGACCTTATTTTTCAAATTTTA
1 TGCCCCTATTTTTTAGATTTTA
47406465 TAGCTTTACC
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
26 4 0.04
27 26 0.29
28 25 0.28
29 15 0.17
30 20 0.22
ACGTcount: A:0.21, C:0.16, G:0.07, T:0.55
Consensus pattern (28 bp):
TGCCCCTATTTTTTAGATTTTACAATTT
Found at i:47406463 original size:28 final size:27
Alignment explanation
Indices: 47406330--47406464 Score: 144
Period size: 28 Copynumber: 4.8 Consensus size: 27
47406320 TACGACCATG
47406330 TGCCCCTATTTTTCAGATTTTACAATTT
1 TGCCCCTATTTTT-AGATTTTACAATTT
** * *
47406358 TGCCTATTATTTTTAGATTTTATACTTT
1 TGCC-CCTATTTTTAGATTTTACAATTT
*
47406386 TGCCCCTATTTTTAGATTTTACAGTTT
1 TGCCCCTATTTTTAGATTTTACAATTT
47406413 TGCCCCTATTTTTTTAGATTTTTACAATTT
1 TGCCCCTA--TTTTTAGA-TTTTACAATTT
* * *
47406443 TGACCTTATTTTTCAAATTTTA
1 TGCCCCTATTTTT-AGATTTTA
47406465 TAGCTTTACC
Statistics
Matches: 90, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
27 27 0.30
28 30 0.33
29 17 0.19
30 16 0.18
ACGTcount: A:0.21, C:0.16, G:0.07, T:0.55
Consensus pattern (27 bp):
TGCCCCTATTTTTAGATTTTACAATTT
Found at i:47413700 original size:42 final size:43
Alignment explanation
Indices: 47413654--47413737 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 43
47413644 TACATAATTC
* *
47413654 ATAATAGGTTCACATATCGCTCAAT-ATAGGTTCGCATGTCAT
1 ATAATAGGTTCACATATCACTCAATCATAGATTCGCATGTCAT
* * *
47413696 ATAATAGGTTCGCATATCATTCAATCATAGATTCGTATGTCA
1 ATAATAGGTTCACATATCACTCAATCATAGATTCGCATGTCA
47413738 CATACAATCA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 22 0.61
43 14 0.39
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (43 bp):
ATAATAGGTTCACATATCACTCAATCATAGATTCGCATGTCAT
Found at i:47415966 original size:40 final size:40
Alignment explanation
Indices: 47415857--47415994 Score: 168
Period size: 40 Copynumber: 3.5 Consensus size: 40
47415847 ACCTAAATAT
** * * * *
47415857 CAGGCTTTGTGCCATTGTATTTATCGGGATTTGTGCCAAC
1 CAGGCTTTGTGCCGGTGTATTTATCAGGCTTTGTGCCTAG
*
47415897 CAAGCTTTGTGCCGGTGTATTTATCAGGCTTTGTGCCTAG
1 CAGGCTTTGTGCCGGTGTATTTATCAGGCTTTGTGCCTAG
* * *
47415937 CAGGGTTTGTGCCGGTGTATTTATTAGGCTTTTTGCCTAG
1 CAGGCTTTGTGCCGGTGTATTTATCAGGCTTTGTGCCTAG
* *
47415977 CAGGCCTTGTGCCCGTGT
1 CAGGCTTTGTGCCGGTGT
47415995 TGTCTATCAG
Statistics
Matches: 84, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 84 1.00
ACGTcount: A:0.14, C:0.20, G:0.28, T:0.38
Consensus pattern (40 bp):
CAGGCTTTGTGCCGGTGTATTTATCAGGCTTTGTGCCTAG
Found at i:47442010 original size:23 final size:20
Alignment explanation
Indices: 47441967--47442011 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
47441957 AAAAATTATA
*
47441967 ATATTTTTTTATGAATAAGT
1 ATATTTTTTTATAAATAAGT
47441987 ATATTATTTTTATAATATATAGT
1 ATATT-TTTTTATAA-ATA-AGT
47442010 AT
1 AT
47442012 GTACATATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 3 0.14
23 5 0.24
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.56
Consensus pattern (20 bp):
ATATTTTTTTATAAATAAGT
Found at i:47443207 original size:14 final size:15
Alignment explanation
Indices: 47443188--47443218 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
47443178 GAAAAAGAAT
47443188 TATTTTATA-AAAAA
1 TATTTTATATAAAAA
47443202 TATTTTATATAAAAA
1 TATTTTATATAAAAA
47443217 TA
1 TA
47443219 AATGAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTTTATATAAAAA
Found at i:47444101 original size:106 final size:106
Alignment explanation
Indices: 47443904--47444101 Score: 267
Period size: 106 Copynumber: 1.9 Consensus size: 106
47443894 AATACAAACC
47443904 AATATGAAAAAAAAAATGTCAAACAAGTCAAGTTTAGCCTGTAAATCCTTCTAGTCATTCAATAA
1 AATATGAAAAAAAAAATGTCAAACAAGTCAAGTTTAGCCTGTAAATCCTTCTAGTCATTCAATAA
* * *
47443969 TTTAGAGCTAAGATTACAAATTATCATCCAAATGATAGAGAT
66 TATAGAGATAAGATAACAAA-TATCATCCAAATGATAGAGAT
* * *
47444011 AATAT-AAGAAAAAAATGTCAAACAAGTCAAGTTTAGCCTTTAAATCCTTCTAGTCATCATCCA-
1 AATATGAAAAAAAAAATGTCAAACAAGTCAAGTTTAGCCTGTAAATCCTTCTAGTCAT--TCAAT
* *
47444074 AATGATAGAGATAATATAAGAAA-ATCAT
64 AAT-ATAGAGATAAGATAACAAATATCAT
47444102 ATTTACAAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
106 55 0.69
107 8 0.10
108 17 0.21
ACGTcount: A:0.46, C:0.14, G:0.12, T:0.28
Consensus pattern (106 bp):
AATATGAAAAAAAAAATGTCAAACAAGTCAAGTTTAGCCTGTAAATCCTTCTAGTCATTCAATAA
TATAGAGATAAGATAACAAATATCATCCAAATGATAGAGAT
Found at i:47450426 original size:26 final size:27
Alignment explanation
Indices: 47450397--47450473 Score: 84
Period size: 30 Copynumber: 2.8 Consensus size: 27
47450387 TGAATTAGAT
*
47450397 ATTTAATATGCA-TTTTTTACCTAAAC
1 ATTTAATGTGCATTTTTTTACCTAAAC
47450423 ATTTAATGTGCACATTTTTTTTACCTAAAC
1 ATTTAATGTG--CA-TTTTTTTACCTAAAC
* **
47450453 ATTGAATGTGCACATTTTTAC
1 ATTTAATGTGCATTTTTTTAC
47450474 GTAGGATATT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
26 9 0.21
27 7 0.16
28 4 0.09
30 23 0.53
ACGTcount: A:0.31, C:0.16, G:0.08, T:0.45
Consensus pattern (27 bp):
ATTTAATGTGCATTTTTTTACCTAAAC
Found at i:47450445 original size:30 final size:30
Alignment explanation
Indices: 47450409--47450471 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
47450399 TTAATATGCA
*
47450409 TTTTTTACCTAAACATTTAATGTGCACATT
1 TTTTTTACCTAAACATTGAATGTGCACATT
47450439 TTTTTTACCTAAACATTGAATGTGCACATT
1 TTTTTTACCTAAACATTGAATGTGCACATT
47450469 TTT
1 TTT
47450472 ACGTAGGATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.29, C:0.16, G:0.08, T:0.48
Consensus pattern (30 bp):
TTTTTTACCTAAACATTGAATGTGCACATT
Found at i:47451196 original size:22 final size:22
Alignment explanation
Indices: 47451143--47451196 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 22
47451133 TGACAAGAAG
* *
47451143 TATGTTTAATCACTTAAAAAAT
1 TATGTTTAATAAATTAAAAAAT
** * *
47451165 TATGAATAATAAATTAATACAT
1 TATGTTTAATAAATTAAAAAAT
47451187 TATGTTTAAT
1 TATGTTTAAT
47451197 CCCTTTAAAA
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.43
Consensus pattern (22 bp):
TATGTTTAATAAATTAAAAAAT
Found at i:47453975 original size:3 final size:3
Alignment explanation
Indices: 47453967--47454001 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
47453957 GATTCAGGAA
* *
47453967 ATG ATG ATG ATG GTG ATG ATG ATG ATG GTG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
47454002 AAGGTCAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:47453987 original size:15 final size:15
Alignment explanation
Indices: 47453967--47454001 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
47453957 GATTCAGGAA
47453967 ATGATGATGATGGTG
1 ATGATGATGATGGTG
47453982 ATGATGATGATGGTG
1 ATGATGATGATGGTG
47453997 ATGAT
1 ATGAT
47454002 AAGGTCAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.34
Consensus pattern (15 bp):
ATGATGATGATGGTG
Found at i:47463858 original size:88 final size:88
Alignment explanation
Indices: 47463709--47464637 Score: 1106
Period size: 88 Copynumber: 10.6 Consensus size: 88
47463699 CTATAAGTCC
* * * **
47463709 TATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAATTAGCAGATATTGTCTTCCTGTATTGGCAGTA
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCG
*
47463774 AAGTAGATCGAAGACCTCAGCCT
66 AAGTAGATCGAAGAACTCAGCCT
* * * * * *
47463797 TATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGTAGATCTTATTTTCATGTATTGGCAACG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCG
47463862 AAGTAGATCGAAGATAC-CAGCCT
66 AAGTAGATCGAAGA-ACTCAGCCT
* * *
47463885 TGTCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGGCAGCG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCG
*
47463950 AAGTAGATCGAAGATA-TCAGCCC
66 AAGTAGATCGAAGA-ACTCAGCCT
* * ** * *
47463973 TGTCTCCCTGAGCAGCAATGGAGTAGGTTGAAAATAATAGATCTTGTGTTCCTGTATTGGCAACG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCG
* *
47464038 AAGAAGATCGAAGACCTCAGCCT
66 AAGTAGATCGAAGAACTCAGCCT
* *
47464061 TAT-TCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTATATTGGCAGCG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCG
* *
47464125 AAGTATATCAAAGATAC-CAGCCT
66 AAGTAGATCGAAGA-ACTCAGCCT
* * * * * *
47464148 TGTCTCCTTGAGCAGTAGTGGAGTAGGTTAAAAATAGTAGATCTTGTCTTCTTGTATTGGCAGCG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCG
*
47464213 AAGTAGATTGAAG-ACTCTAGCCT
66 AAGTAGATCGAAGAACTC-AGCCT
* * * *
47464236 TATCTCCCTGAGCAACAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCTTGTATTGGCAGCA
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCG
47464301 AAGTAGATCGAAGATAC-CAGCCT
66 AAGTAGATCGAAGA-ACTCAGCCT
* * * * *
47464324 TGTCTCCCTGAGCAGCAATGGAGTAGGTTAAAAATAACAGATCTTGTCTTCCTGTATTGGCAGGG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCG
* * *
47464389 AAGTAGA-CCAAAAACACTAGCCT
66 AAGTAGATCGAAGAACTC-AGCCT
* * *
47464412 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATATTGTCTTTCTGTGTTGGCAGCG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCG
47464477 AAGTAGATCGAAGATAC-CAGCCT
66 AAGTAGATCGAAGA-ACTCAGCCT
* * * * *
47464500 TGTCTCCCTGAGTAGCAGTGGAGTAGGTT-AAAGATAGCAGATATTGCCTTCCTGTATTGACAGC
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAA-ATAGCAGATCTTGTCTTCCTGTATTGGCAGC
*
47464564 GAAGCAGATCGACA-ACAC-CAGCCT
65 GAAGTAGATCGA-AGA-ACTCAGCCT
** * ** * * *
47464588 TGCCTCTCTGAGTTTGCAGTGGACTAGGTTGAAAATTGTAGATCTTGTCT
1 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCT
47464638 CCCTAAGCAG
Statistics
Matches: 735, Mismatches: 89, Indels: 33
0.86 0.10 0.04
Matches are distributed among these distances:
86 4 0.01
87 82 0.11
88 607 0.83
89 35 0.05
90 7 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (88 bp):
TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCG
AAGTAGATCGAAGAACTCAGCCT
Found at i:47463933 original size:44 final size:43
Alignment explanation
Indices: 47463883--47464019 Score: 114
Period size: 44 Copynumber: 3.1 Consensus size: 43
47463873 AGATACCAGC
*
47463883 CTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGTAGAT
1 CTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATA-TAGAT
* *** * * * * * *
47463927 CTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATATCAG-C
1 CTTGTCTCCCTG-AGCAGCAGTGGAGTAGGTTGAAAATAT-AGAT
* *
47463971 CCTGTCTCCCTGAGCAGCAATGGAGTAGGTTGAAAATAATAGAT
1 CTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAT-ATAGAT
47464015 CTTGT
1 CTTGT
47464020 GTTCCTGTAT
Statistics
Matches: 65, Mismatches: 24, Indels: 8
0.67 0.25 0.08
Matches are distributed among these distances:
43 18 0.28
44 28 0.43
45 19 0.29
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (43 bp):
CTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATATAGAT
Found at i:47464360 original size:351 final size:352
Alignment explanation
Indices: 47463709--47464588 Score: 1248
Period size: 351 Copynumber: 2.5 Consensus size: 352
47463699 CTATAAGTCC
* * **
47463709 TATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAATTAGCAGATATTGTCTTCCTGTATTGGCAGTA
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATATTGTCTTCCTGTATTGGCAGCG
* * *
47463774 AAGTAGATCGAAGA-CCTCAGCCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGTAGA
66 AAGTAGATCGAAGATAC-CAGCCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTAAAAATAGTAGA
* * * * **
47463838 TCTTATTTTCATGTATTGGCAACGAAGTAGATCGAAGATACCAGCCTTGTCTCCCTGAGCAGTAG
130 TCTTGTCTTCATGTATTGGCAGCGAAGTAGATCGAAGATACCAGCCTTATCTCCCTGAGCAACAG
** * *
47463903 TGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATATC
195 TGGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTATTGGCAGCAAAGTAGATCGAAGATACC
* * *
47463968 AGCCCTGTCTCCCTGAGCAGCAATGGAGTAGGTTGAAAATAATAGATCTTGTGTTCCTGTATTGG
260 AGCCCTGTCTCCCTGAGCAGCAATGGAGTAGGTTAAAAATAACAGATCTTGTCTTCCTGTATTGG
* * *
47464033 CAACGAAGAAGATCGAAGAC-CTCAGCCT
325 CAACGAAGAAGACCAAAAACACT-AGCCT
* * *
47464061 TAT-TCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTATATTGGCAGCG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATATTGTCTTCCTGTATTGGCAGCG
* * *
47464125 AAGTATATCAAAGATACCAGCCTTGTCTCCTTGAGCAGTAGTGGAGTAGGTTAAAAATAGTAGAT
66 AAGTAGATCGAAGATACCAGCCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTAAAAATAGTAGAT
* * *
47464190 CTTGTCTTCTTGTATTGGCAGCGAAGTAGATTGAAGACT-CTAGCCTTATCTCCCTGAGCAACAG
131 CTTGTCTTCATGTATTGGCAGCGAAGTAGATCGAAGA-TACCAGCCTTATCTCCCTGAGCAACAG
*
47464254 TGGAGTAGGTTGAAAATAACAGATCTTGTCTTCTTGTATTGGCAGCAAAGTAGATCGAAGATACC
195 TGGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTATTGGCAGCAAAGTAGATCGAAGATACC
*
47464319 AGCCTTGTCTCCCTGAGCAGCAATGGAGTAGGTTAAAAATAACAGATCTTGTCTTCCTGTATTGG
260 AGCCCTGTCTCCCTGAGCAGCAATGGAGTAGGTTAAAAATAACAGATCTTGTCTTCCTGTATTGG
** *
47464384 CAGGGAAGTAGACCAAAAACACTAGCCT
325 CAACGAAGAAGACCAAAAACACTAGCCT
* *
47464412 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATATTGTCTTTCTGTGTTGGCAGCG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATATTGTCTTCCTGTATTGGCAGCG
* * * *
47464477 AAGTAGATCGAAGATACCAGCCTTGTCTCCCTGAGTAGCAGTGGAGTAGGTTAAAGATAGCAGAT
66 AAGTAGATCGAAGATACCAGCCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTAAAAATAGTAGAT
* * * * * *
47464542 ATTGCCTTCCTGTATTGACAGCGAAGCAGATCGACA-ACACCAGCCTT
131 CTTGTCTTCATGTATTGGCAGCGAAGTAGATCGA-AGATACCAGCCTT
47464589 GCCTCTCTGA
Statistics
Matches: 465, Mismatches: 57, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
351 307 0.66
352 157 0.34
353 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (352 bp):
TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATATTGTCTTCCTGTATTGGCAGCG
AAGTAGATCGAAGATACCAGCCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTAAAAATAGTAGAT
CTTGTCTTCATGTATTGGCAGCGAAGTAGATCGAAGATACCAGCCTTATCTCCCTGAGCAACAGT
GGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTATTGGCAGCAAAGTAGATCGAAGATACCA
GCCCTGTCTCCCTGAGCAGCAATGGAGTAGGTTAAAAATAACAGATCTTGTCTTCCTGTATTGGC
AACGAAGAAGACCAAAAACACTAGCCT
Found at i:47464370 original size:44 final size:44
Alignment explanation
Indices: 47464238--47464377 Score: 117
Period size: 44 Copynumber: 3.2 Consensus size: 44
47464228 TCTAGCCTTA
* *
47464238 TCTCCCTGAGCAACAGTGGAGTAGGTTGAAAATAACAGATCTTG
1 TCTCCCTGAGCAGCAATGGAGTAGGTTGAAAATAACAGATCTTG
* * * * * * *
47464282 TCTTCTTGTATTGGCAGCAA---AGTAGATCGAAGATACCAG-CCTTG
1 TCTCCCTG-A---GCAGCAATGGAGTAGGTTGAAAATAACAGATCTTG
*
47464326 TCTCCCTGAGCAGCAATGGAGTAGGTTAAAAATAACAGATCTTG
1 TCTCCCTGAGCAGCAATGGAGTAGGTTGAAAATAACAGATCTTG
*
47464370 TCTTCCTG
1 TCTCCCTG
47464378 TATTGGCAGG
Statistics
Matches: 70, Mismatches: 18, Indels: 16
0.67 0.17 0.15
Matches are distributed among these distances:
40 7 0.10
43 15 0.21
44 27 0.39
45 16 0.23
48 5 0.07
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (44 bp):
TCTCCCTGAGCAGCAATGGAGTAGGTTGAAAATAACAGATCTTG
Found at i:47464402 original size:45 final size:45
Alignment explanation
Indices: 47464266--47464402 Score: 109
Period size: 44 Copynumber: 3.1 Consensus size: 45
47464256 GAGTAGGTTG
* ** *
47464266 AAAATAACAGATCTTGTCTTCTTGTATTGGCAGCAAAGTAGATCG
1 AAAATAACAGATCTTGTCTTCCTGTATTGGCAGGGAAGTAGATCA
* * * * *** * * *
47464311 AAGATACCAG-CCTTGTCTCCCTG-AGCAGCAATGG-AGTAGGTTA
1 AAAATAACAGATCTTGTCTTCCTGTATTGGC-AGGGAAGTAGATCA
*
47464354 AAAATAACAGATCTTGTCTTCCTGTATTGGCAGGGAAGTAGACCA
1 AAAATAACAGATCTTGTCTTCCTGTATTGGCAGGGAAGTAGATCA
47464399 AAAA
1 AAAA
47464403 CACTAGCCTT
Statistics
Matches: 63, Mismatches: 25, Indels: 8
0.66 0.26 0.08
Matches are distributed among these distances:
43 17 0.27
44 25 0.40
45 21 0.33
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (45 bp):
AAAATAACAGATCTTGTCTTCCTGTATTGGCAGGGAAGTAGATCA
Found at i:47466112 original size:17 final size:20
Alignment explanation
Indices: 47466077--47466118 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
47466067 AAATATTGTA
47466077 ATTTTAATTCAATCATTATT
1 ATTTTAATTCAATCATTATT
*
47466097 -TTTTAATT-ATTC-TTATT
1 ATTTTAATTCAATCATTATT
47466114 ATTTT
1 ATTTT
47466119 TGAGCATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 5 0.25
18 7 0.35
19 8 0.40
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (20 bp):
ATTTTAATTCAATCATTATT
Found at i:47475914 original size:12 final size:11
Alignment explanation
Indices: 47475894--47475923 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
47475884 GTTTTTACTT
47475894 GTTTTGTTTCG
1 GTTTTGTTTCG
47475905 GTTGTTGTTTCG
1 GTT-TTGTTTCG
47475917 GTTTTGT
1 GTTTTGT
47475924 AAGGAATTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.00, C:0.07, G:0.30, T:0.63
Consensus pattern (11 bp):
GTTTTGTTTCG
Found at i:47476850 original size:26 final size:28
Alignment explanation
Indices: 47476821--47476877 Score: 66
Period size: 26 Copynumber: 2.1 Consensus size: 28
47476811 ACACCAATAA
*
47476821 ATTTTTA-AAAAAAATAAAA-TGTTAAT
1 ATTTTTATAAAAAAATAAAATTATTAAT
**
47476847 A-TTTTATATTAAAATAAAATTATTAAT
1 ATTTTTATAAAAAAATAAAATTATTAAT
47476874 ATTT
1 ATTT
47476878 ATTTAGTTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
25 5 0.20
26 11 0.44
27 7 0.28
28 2 0.08
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (28 bp):
ATTTTTATAAAAAAATAAAATTATTAAT
Found at i:47477916 original size:47 final size:49
Alignment explanation
Indices: 47477837--47477929 Score: 120
Period size: 47 Copynumber: 1.9 Consensus size: 49
47477827 GAAAGTGCAA
*
47477837 GGAAACGTGGGGAAAACCCCACAGACCATAATGTACGTCCAACATTTGAG
1 GGAAACGTGGGG-AAACCCCACAGACCATAATGCACGTCCAACATTTGAG
* *
47477887 GGAAACGT-GGG-AACCCCAC-GAACCTTAATGCATGTCCAACATT
1 GGAAACGTGGGGAAACCCCACAG-ACCATAATGCACGTCCAACATT
47477930 CTCCCACTTG
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
46 1 0.03
47 27 0.69
49 3 0.08
50 8 0.21
ACGTcount: A:0.34, C:0.26, G:0.23, T:0.17
Consensus pattern (49 bp):
GGAAACGTGGGGAAACCCCACAGACCATAATGCACGTCCAACATTTGAG
Found at i:47479412 original size:17 final size:17
Alignment explanation
Indices: 47479388--47479450 Score: 81
Period size: 17 Copynumber: 3.6 Consensus size: 17
47479378 AATCTTCCTG
*
47479388 ATTAGTTTATTAATTTTT
1 ATTA-TTTATTTATTTTT
* *
47479406 ATTGTTTGTTTATTTTT
1 ATTATTTATTTATTTTT
47479423 ATTATTTATTTATTTTT
1 ATTATTTATTTATTTTT
*
47479440 GTTATTTATTT
1 ATTATTTATTT
47479451 TTATCTCAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
17 36 0.92
18 3 0.08
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.73
Consensus pattern (17 bp):
ATTATTTATTTATTTTT
Found at i:47481184 original size:22 final size:21
Alignment explanation
Indices: 47481154--47481197 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
47481144 TTAGCTTCTC
*
47481154 ATGTTAATTCACACATTTTGAA
1 ATGTCAATTCACACA-TTTGAA
* *
47481176 ATGTCAATTTACATATTTGAA
1 ATGTCAATTCACACATTTGAA
47481197 A
1 A
47481198 CCTCGCTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (21 bp):
ATGTCAATTCACACATTTGAA
Found at i:47482140 original size:24 final size:24
Alignment explanation
Indices: 47482074--47482142 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
47482064 ATCTATAACT
* *
47482074 ATATCTACATCTATGTCTGTATCA
1 ATATCTACAACTATGTTTGTATCA
*
47482098 ATATCTGC-A-TAAGTGTTTGTATCA
1 ATATCTACAACT-A-TGTTTGTATCA
*
47482122 ATATCTACAACTATATTTGTA
1 ATATCTACAACTATGTTTGTA
47482143 ACCGTATCTG
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
22 1 0.03
23 1 0.03
24 31 0.86
25 2 0.06
26 1 0.03
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.42
Consensus pattern (24 bp):
ATATCTACAACTATGTTTGTATCA
Found at i:47482151 original size:48 final size:48
Alignment explanation
Indices: 47482074--47482215 Score: 133
Period size: 48 Copynumber: 3.0 Consensus size: 48
47482064 ATCTATAACT
* * * ** *
47482074 ATATCTACATCTATGTCTGTATCAATATCTGCATAAGTGTTTGTATCA
1 ATATCTACAACTATATCTGTAACCGTATCTGCATATGTGTTTGTATCA
* * **
47482122 ATATCTACAACTATATTTGTAACCGTATCTGCATCTGTGCATGTATCA
1 ATATCTACAACTATATCTGTAACCGTATCTGCATATGTGTTTGTATCA
* * * * * *
47482170 ATATCTGCAATTGTATCTGTATCTG-AACTGCATATGTGTTTGTATC
1 ATATCTACAACTATATCTGTAACCGTATCTGCATATGTGTTTGTATC
47482216 TGTATTTATT
Statistics
Matches: 74, Mismatches: 20, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
47 17 0.23
48 57 0.77
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (48 bp):
ATATCTACAACTATATCTGTAACCGTATCTGCATATGTGTTTGTATCA
Found at i:47482190 original size:24 final size:23
Alignment explanation
Indices: 47482089--47482192 Score: 61
Period size: 24 Copynumber: 4.3 Consensus size: 23
47482079 TACATCTATG
*
47482089 TCTGTATCAATATCTGCATAAGTGT
1 TCTGTATCAATATCTGC--AATTGT
* *
47482114 T-TGTATCAATATCTACAACTATAT
1 TCTGTATCAATATCTGCAA-T-TGT
* **
47482138 T-TGTAACCGTATCTGC-ATCTGT
1 TCTGTATCAATATCTGCAAT-TGT
*
47482160 GCATGTATCAATATCTGCAATTGT
1 TC-TGTATCAATATCTGCAATTGT
47482184 ATCTGTATC
1 -TCTGTATC
47482193 TGAACTGCAT
Statistics
Matches: 59, Mismatches: 14, Indels: 13
0.69 0.16 0.15
Matches are distributed among these distances:
22 5 0.08
23 1 0.02
24 49 0.83
25 4 0.07
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.40
Consensus pattern (23 bp):
TCTGTATCAATATCTGCAATTGT
Found at i:47483652 original size:21 final size:21
Alignment explanation
Indices: 47483626--47483679 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
47483616 AGATTTGCTT
47483626 ACACGGGCGTGTTCCTCAACC
1 ACACGGGCGTGTTCCTCAACC
47483647 ACACGGGCGTGTTCCTCAACC
1 ACACGGGCGTGTTCCTCAACC
47483668 ACACGGGCGTGT
1 ACACGGGCGTGT
47483680 CCCTTAGTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.19, C:0.35, G:0.28, T:0.19
Consensus pattern (21 bp):
ACACGGGCGTGTTCCTCAACC
Found at i:47483696 original size:21 final size:21
Alignment explanation
Indices: 47483667--47483742 Score: 75
Period size: 21 Copynumber: 3.6 Consensus size: 21
47483657 GTTCCTCAAC
*
47483667 CACACGGGCGTGTCCCTTAGT
1 CACATGGGCGTGTCCCTTAGT
* * *
47483688 TACATGGGCATGT-GCTTCAGT
1 CACATGGGCGTGTCCCTT-AGT
47483709 CAC-TCGGGCGTGTCCCTTAGT
1 CACAT-GGGCGTGTCCCTTAGT
*
47483730 CACATGGGTGTGT
1 CACATGGGCGTGT
47483743 GCTCTATTAC
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
20 4 0.09
21 35 0.81
22 4 0.09
ACGTcount: A:0.14, C:0.26, G:0.30, T:0.29
Consensus pattern (21 bp):
CACATGGGCGTGTCCCTTAGT
Found at i:47487409 original size:18 final size:18
Alignment explanation
Indices: 47487386--47487422 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
47487376 GGGTAGGATT
47487386 TTGCTACTAATACTGTGA
1 TTGCTACTAATACTGTGA
47487404 TTGCTACTAATACTGTGA
1 TTGCTACTAATACTGTGA
47487422 T
1 T
47487423 GGGCTAAGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (18 bp):
TTGCTACTAATACTGTGA
Found at i:47489999 original size:26 final size:26
Alignment explanation
Indices: 47489967--47490042 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
47489957 ACAAATTTTC
*
47489967 TCAAAATTTTATTAGGGGTAAAATTG
1 TCAAAATTTTACTAGGGGTAAAATTG
* *
47489993 TTAAAATTTTACTAGAGGTAAAATTG
1 TCAAAATTTTACTAGGGGTAAAATTG
*
47490019 TCAAAATTATACT-GGGGTAAAATT
1 TCAAAATTTTACTAGGGGTAAAATT
47490043 AGGGTGAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
25 10 0.23
26 34 0.77
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.37
Consensus pattern (26 bp):
TCAAAATTTTACTAGGGGTAAAATTG
Found at i:47491437 original size:11 final size:11
Alignment explanation
Indices: 47491423--47491451 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
47491413 TTGGGATAGC
47491423 CTTGGTTCGAA
1 CTTGGTTCGAA
47491434 CTTGGTTCGAA
1 CTTGGTTCGAA
47491445 CTTGGTT
1 CTTGGTT
47491452 TAATATATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.14, C:0.17, G:0.28, T:0.41
Consensus pattern (11 bp):
CTTGGTTCGAA
Found at i:47492883 original size:28 final size:28
Alignment explanation
Indices: 47492852--47492975 Score: 105
Period size: 28 Copynumber: 4.5 Consensus size: 28
47492842 CTTGTATTAC
*
47492852 AAATTTTACAATTTTGCGACTATTTTCA
1 AAATTTTACAATTTTGCGTCTATTTTCA
* * *
47492880 AAATTTTAC-ACTTTGCCTCTATTTTACC
1 AAATTTTACAATTTTGCGTCTATTTT-CA
* * *
47492908 AAA-TTTATATTTTTGCGCCTATTTTTCA
1 AAATTTTACAATTTTGCGTCTA-TTTTCA
*
47492936 AAA-TTTATAATTTTGTC-TCTATTTT-A
1 AAATTTTACAATTTTG-CGTCTATTTTCA
47492962 CAAATTTTACAATT
1 -AAATTTTACAATT
47492976 CTCCCCATTT
Statistics
Matches: 77, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
26 1 0.01
27 24 0.31
28 47 0.61
29 5 0.06
ACGTcount: A:0.30, C:0.15, G:0.05, T:0.50
Consensus pattern (28 bp):
AAATTTTACAATTTTGCGTCTATTTTCA
Found at i:47492992 original size:26 final size:27
Alignment explanation
Indices: 47492963--47493063 Score: 105
Period size: 28 Copynumber: 3.7 Consensus size: 27
47492953 TCTATTTTAC
*
47492963 AAATTTTACAATTCT-CCCCATTTTTT
1 AAATTTTACAATTTTACCCCATTTTTT
* *
47492989 AAATTTTATAATTTTACCCATATTTTTT
1 AAATTTTACAATTTTACCC-CATTTTTT
* * * **
47493017 AGATTTTTCAATTTTGCCCCTATTTTAC
1 AAATTTTACAATTTTACCCC-ATTTTTT
47493045 AAATTTTACAATTTTACCC
1 AAATTTTACAATTTTACCC
47493064 TAAAATTATG
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
26 13 0.22
27 3 0.05
28 43 0.73
ACGTcount: A:0.29, C:0.19, G:0.02, T:0.50
Consensus pattern (27 bp):
AAATTTTACAATTTTACCCCATTTTTT
Found at i:47493013 original size:54 final size:55
Alignment explanation
Indices: 47492818--47493065 Score: 175
Period size: 56 Copynumber: 4.5 Consensus size: 55
47492808 ATGTCCCTTT
* * * * **
47492818 TTTTTCAAAATTTACAATTTTTCCCT-TGTATTACAAATTTTACAATTTTGCGACTA
1 TTTTTCAAATTTTATAATTTTACCCTAT-T-TTACAAATTTTACAATTCTGCCCCTA
* * * * * * *
47492874 -TTTTCAAAATTTTA-CACTTTGCCTCTATTTTACCAAA-TTTATATTTTTGCGCCTA
1 TTTTTC-AAATTTTATAATTTTACC-CTATTTTA-CAAATTTTACAATTCTGCCCCTA
* * *
47492929 TTTTTCAAAATTTATAATTTTGTCTCTATTTTACAAATTTTACAATTCT-CCCC-A
1 TTTTTCAAATTTTATAATTTT-ACCCTATTTTACAAATTTTACAATTCTGCCCCTA
* ** * * *
47492983 TTTTTTAAATTTTATAATTTTACCCATATTTTTTAGATTTTTCAATTTTGCCCCTA
1 TTTTTCAAATTTTATAATTTTACCC-TATTTTACAAATTTTACAATTCTGCCCCTA
* *
47493039 TTTTACAAATTTTACAATTTTACCCTA
1 TTTTTCAAATTTTATAATTTTACCCTA
47493066 AAATTATGAT
Statistics
Matches: 153, Mismatches: 28, Indels: 23
0.75 0.14 0.11
Matches are distributed among these distances:
53 2 0.01
54 38 0.25
55 49 0.32
56 62 0.41
57 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.04, T:0.51
Consensus pattern (55 bp):
TTTTTCAAATTTTATAATTTTACCCTATTTTACAAATTTTACAATTCTGCCCCTA
Found at i:47510040 original size:32 final size:32
Alignment explanation
Indices: 47510002--47510065 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
47509992 TACAAGGTAA
47510002 AAATATTTGCAATCTGGGAGATCGAATCTAAT
1 AAATATTTGCAATCTGGGAGATCGAATCTAAT
47510034 AAATATTTGCAATCTGGGAGATCGAATCTAAT
1 AAATATTTGCAATCTGGGAGATCGAATCTAAT
47510066 CTAATCATAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (32 bp):
AAATATTTGCAATCTGGGAGATCGAATCTAAT
Found at i:47511532 original size:22 final size:22
Alignment explanation
Indices: 47511507--47511549 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
47511497 AATAAGATTT
*
47511507 AATATTAAATTTAATCTAATAA
1 AATATTAAATTAAATCTAATAA
* *
47511529 AATATTAGATTAAATTTAATA
1 AATATTAAATTAAATCTAATA
47511550 TTAAAGTGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (22 bp):
AATATTAAATTAAATCTAATAA
Found at i:47511688 original size:26 final size:22
Alignment explanation
Indices: 47511659--47511706 Score: 60
Period size: 26 Copynumber: 2.0 Consensus size: 22
47511649 AGTTGTAGAG
47511659 AGAAAATTCTCTGAAGAGATTATTTT
1 AGAAAATT-TCT--AGAGA-TATTTT
47511685 AGAAAATTTCTAGAGATATTTT
1 AGAAAATTTCTAGAGATATTTT
47511707 TTTAATTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.27
23 5 0.23
25 3 0.14
26 8 0.36
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.40
Consensus pattern (22 bp):
AGAAAATTTCTAGAGATATTTT
Found at i:47512789 original size:47 final size:46
Alignment explanation
Indices: 47512684--47512772 Score: 169
Period size: 47 Copynumber: 1.9 Consensus size: 46
47512674 ATTTTGACTG
47512684 ACCTCCCTTTTCTAGGACCCTACCTGGTGCACGGTTCACATTGACCC
1 ACCTCCCTTTTCTAGGACCCTACCTGGTGCACGGTTCACATT-ACCC
47512731 ACCTCCCTTTTCTAGGACCCTACCTGGTGCACGGTTCACATT
1 ACCTCCCTTTTCTAGGACCCTACCTGGTGCACGGTTCACATT
47512773 CCCTTCTTCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.17, C:0.37, G:0.17, T:0.29
Consensus pattern (46 bp):
ACCTCCCTTTTCTAGGACCCTACCTGGTGCACGGTTCACATTACCC
Found at i:47519328 original size:12 final size:12
Alignment explanation
Indices: 47519304--47519335 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
47519294 TCTATTATTT
47519304 TATTAAGATTTAA
1 TATTAA-ATTTAA
47519317 TATTAAATTTAA
1 TATTAAATTTAA
47519329 TATTAAA
1 TATTAAA
47519336 ATGATTAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (12 bp):
TATTAAATTTAA
Found at i:47520670 original size:16 final size:16
Alignment explanation
Indices: 47520622--47520670 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
47520612 CCATATTTTC
47520622 GTATATCTGTTAATAT
1 GTATATCTGTTAATAT
* * *
47520638 GATAAATCCG-TATTAT
1 G-TATATCTGTTAATAT
47520654 GTATATCTGTTAATAT
1 GTATATCTGTTAATAT
47520670 G
1 G
47520671 ATTGCATGCA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
15 6 0.24
16 13 0.52
17 6 0.24
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.45
Consensus pattern (16 bp):
GTATATCTGTTAATAT
Found at i:47524588 original size:49 final size:52
Alignment explanation
Indices: 47524534--47524642 Score: 134
Period size: 49 Copynumber: 2.2 Consensus size: 52
47524524 CCGATCGAGC
* * * *
47524534 ACACACTTGGGCACCAGGTGCCAAGCCCATAGGC-TAACAT-C-CCTCTAAA
1 ACACACCTCGGCACCAAGTGCCAAGCCCATAGGCTTAACATCCGCCCCTAAA
* * *
47524583 ACACACCTCGGCACCAAGTGTCAAGCCCGTAGGCTTTACATCCGCCCCTAAA
1 ACACACCTCGGCACCAAGTGCCAAGCCCATAGGCTTAACATCCGCCCCTAAA
47524635 ACACACCT
1 ACACACCT
47524643 GAAATACTAT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
49 29 0.58
50 5 0.10
51 1 0.02
52 15 0.30
ACGTcount: A:0.29, C:0.38, G:0.17, T:0.17
Consensus pattern (52 bp):
ACACACCTCGGCACCAAGTGCCAAGCCCATAGGCTTAACATCCGCCCCTAAA
Found at i:47527756 original size:42 final size:42
Alignment explanation
Indices: 47527673--47527880 Score: 201
Period size: 42 Copynumber: 5.0 Consensus size: 42
47527663 AAGGATCCCA
* * * *
47527673 GTGGAATCAACACTTAGCAACCACC-TTATAATCAATGATAC-
1 GTGGAATCAGCACATAGCAACC-CCTTTACAATCAAGGATACG
* * *
47527714 GAGGAATCAGCGCATAACAACCCCTTTAACAATCAAGGATACG
1 GTGGAATCAGCACATAGCAACCCCTTT-ACAATCAAGGATACG
* * *
47527757 GTGGAATCAGCACTTAGCAACCACC-TTATAATCAATGATACG
1 GTGGAATCAGCACATAGCAACC-CCTTTACAATCAAGGATACG
*
47527799 G-GGAATTAGCACATAGCAACCCCTTTCACAATCAAGGATACG
1 GTGGAATCAGCACATAGCAACCCCTTT-ACAATCAAGGATACG
* * * *
47527841 GTGGAATCAACACTTAGCAACCACC-TTATAATCAATGATA
1 GTGGAATCAGCACATAGCAACC-CCTTTACAATCAAGGATA
47527881 TGAGTTCACA
Statistics
Matches: 137, Mismatches: 22, Indels: 15
0.79 0.13 0.09
Matches are distributed among these distances:
40 4 0.03
41 39 0.28
42 51 0.37
43 39 0.28
44 4 0.03
ACGTcount: A:0.38, C:0.25, G:0.16, T:0.22
Consensus pattern (42 bp):
GTGGAATCAGCACATAGCAACCCCTTTACAATCAAGGATACG
Found at i:47527777 original size:84 final size:84
Alignment explanation
Indices: 47527673--47527880 Score: 362
Period size: 84 Copynumber: 2.5 Consensus size: 84
47527663 AAGGATCCCA
*
47527673 GTGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGAGGAATCAGCGCATAACAACCCC
1 GTGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGAGGAATCAGCACATAACAACCCC
47527738 TTTAACAATCAAGGATACG
66 TTTAACAATCAAGGATACG
* * * *
47527757 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATTAGCACATAGCAACCCC
1 GTGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGAGGAATCAGCACATAACAACCCC
*
47527822 TTTCACAATCAAGGATACG
66 TTTAACAATCAAGGATACG
47527841 GTGGAATCAACACTTAGCAACCACCTTATAATCAATGATA
1 GTGGAATCAACACTTAGCAACCACCTTATAATCAATGATA
47527881 TGAGTTCACA
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 117 1.00
ACGTcount: A:0.38, C:0.25, G:0.16, T:0.22
Consensus pattern (84 bp):
GTGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGAGGAATCAGCACATAACAACCCC
TTTAACAATCAAGGATACG
Found at i:47535142 original size:14 final size:14
Alignment explanation
Indices: 47535123--47535157 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
47535113 ACGAGTTTGT
*
47535123 AAAAAATATT-TGA
1 AAAAAAAATTCTGA
47535136 AAAAAAAATTCTGA
1 AAAAAAAATTCTGA
47535150 AAAAAAAA
1 AAAAAAAA
47535158 ATTATTTTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 9 0.45
14 11 0.55
ACGTcount: A:0.71, C:0.03, G:0.06, T:0.20
Consensus pattern (14 bp):
AAAAAAAATTCTGA
Found at i:47535160 original size:15 final size:13
Alignment explanation
Indices: 47535118--47535157 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
47535108 GTATTACGAG
* *
47535118 TTTGTAAAAAATA
1 TTTGAAAAAAAAA
47535131 TTTGAAAAAAAAA
1 TTTGAAAAAAAAA
47535144 TTCTGAAAAAAAAA
1 TT-TGAAAAAAAAA
47535158 ATTATTTTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (13 bp):
TTTGAAAAAAAAA
Found at i:47547146 original size:5 final size:5
Alignment explanation
Indices: 47547136--47547169 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
47547126 AATTATAAAT
47547136 ATATG ATATG ATATG ATATG ATATG ATATG ATAT
1 ATATG ATATG ATATG ATATG ATATG ATATG ATAT
47547170 AGCATTATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (5 bp):
ATATG
Found at i:47547284 original size:18 final size:18
Alignment explanation
Indices: 47547247--47547288 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
47547237 TTTTAACTAG
47547247 TATAATAATAAACAATAA
1 TATAATAATAAACAATAA
*
47547265 TATATATAATAAGCAA-AA
1 TATA-ATAATAAACAATAA
47547283 TATAAT
1 TATAAT
47547289 GTACTACTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 2 0.09
18 10 0.45
19 10 0.45
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (18 bp):
TATAATAATAAACAATAA
Found at i:47547617 original size:239 final size:233
Alignment explanation
Indices: 47547156--47547623 Score: 565
Period size: 239 Copynumber: 2.0 Consensus size: 233
47547146 ATATGATATG
* * *
47547156 ATATGATATGATATAGCATTATAAAATATAGAAGGAGGGCTAACTTTTAAATGTACGAAGAGTAT
1 ATATGATATGATATAGCATTATAAAATATAGAAGGAGGGCTAACTTTCAAATGCACAAAGAGTAT
* *
47547221 AGAGATTCAAAGCATATTTTAACTAGTATAATAATAAACAATAATATATATAATAAGCAAAATAT
66 AGAGATTCAAAACATATTTCAACTAGTATAATAATAAACAATAATATATATAATAAGCAAAATAT
*
47547286 AATGTACTACTATTATATATAACTATTATTATATAGATTGTAATAAAAGATATAGTTTTACATGA
131 AATGTACTACTATTATATATAACTATTATTATATAGATTATAATAAAAGA-ATA---TTA-A-GA
* *
47547351 TATTATTATGTTTAATCATTTATGCATATATATAAACTATTAAT
190 TATTATAATGTTTAATCATTGATGCATATATATAAACTATTAAT
* *
47547395 ATATGATATGATATAGCATTATAAAATATAGTAGGAGGGCTAACTTTCAAATGCGCAAAGAGTAT
1 ATATGATATGATATAGCATTATAAAATATAGAAGGAGGGCTAACTTTCAAATGCACAAAGAGTAT
*
47547460 A-AGGACTT-AAAACATATTTCAATTAGTATAATAATAAACAATAAACAATAATATATAATAAAA
66 AGA-GA-TTCAAAACATATTTCAACTAGTATAATAATAAACAAT----AAT-ATATATAAT--AA
* * * *
47547523 TGTAATATATAATGTATTACTATTATATATCAA-TATTATTATATTATATATTATAATAAAAG-A
122 -GCAAAATATAATGTACTACTATTATATAT-AACTATTA-T-TA-TATAGATTATAATAAAAGAA
47547586 TA-T-A-ATATTATAATGTTTAA-CATTGATGCATATATATA
182 TATTAAGATATTATAATGTTTAATCATTGATGCATATATATA
47547624 TAAACTTTTC
Statistics
Matches: 200, Mismatches: 15, Indels: 28
0.82 0.06 0.12
Matches are distributed among these distances:
238 1 0.00
239 111 0.56
240 17 0.09
242 1 0.00
243 3 0.01
244 10 0.05
246 2 0.01
247 31 0.16
248 6 0.03
249 2 0.01
250 16 0.08
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.37
Consensus pattern (233 bp):
ATATGATATGATATAGCATTATAAAATATAGAAGGAGGGCTAACTTTCAAATGCACAAAGAGTAT
AGAGATTCAAAACATATTTCAACTAGTATAATAATAAACAATAATATATATAATAAGCAAAATAT
AATGTACTACTATTATATATAACTATTATTATATAGATTATAATAAAAGAATATTAAGATATTAT
AATGTTTAATCATTGATGCATATATATAAACTATTAAT
Found at i:47548278 original size:41 final size:41
Alignment explanation
Indices: 47548229--47548347 Score: 238
Period size: 41 Copynumber: 2.9 Consensus size: 41
47548219 CATTCAGGGA
47548229 TTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAGGACT
1 TTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAGGACT
47548270 TTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAGGACT
1 TTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAGGACT
47548311 TTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAG
1 TTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAG
47548348 TACCGCAAAA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 78 1.00
ACGTcount: A:0.19, C:0.22, G:0.32, T:0.27
Consensus pattern (41 bp):
TTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAGGACT
Found at i:47548439 original size:72 final size:72
Alignment explanation
Indices: 47548355--47548495 Score: 210
Period size: 72 Copynumber: 2.0 Consensus size: 72
47548345 CAGTACCGCA
* *
47548355 AAAAAACCTAAGCACAACTACGCTGTTTTCTGAGCATTCGAGGATTTAGCGGCGTTTCTGAGAAA
1 AAAAAACCTAAGCACAACGACGCCGTTTTCTGAGCATTCGAGGATTTAGCGGCGTTTCTGAGAAA
47548420 GCGCTGC
66 GCGCTGC
* * * * * *
47548427 AAAAACCCTAAGCCCAACGACGCCGTTTTTTGAGCATTCGGGGATTTAGCGGCGTTTTTGAGGAA
1 AAAAAACCTAAGCACAACGACGCCGTTTTCTGAGCATTCGAGGATTTAGCGGCGTTTCTGAGAAA
47548492 GCGC
66 GCGC
47548496 CGCTAATGCT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (72 bp):
AAAAAACCTAAGCACAACGACGCCGTTTTCTGAGCATTCGAGGATTTAGCGGCGTTTCTGAGAAA
GCGCTGC
Found at i:47548598 original size:114 final size:114
Alignment explanation
Indices: 47548399--47549017 Score: 648
Period size: 114 Copynumber: 5.3 Consensus size: 114
47548389 CATTCGAGGA
* * * * * *
47548399 TTTAGCGGCGTTTCTGAGAAAGCGCTGC-AAAAACCCTAAGCCCAACGACGCCGTTTTTTGAGCA
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGACCT
*
47548463 TTCGGGGATTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
* * * * ** * *
47548512 TTTAGCGGCGTTTTTGAGAAAGCACCACAAAAAAACCTAAACCCAATGACGCTATTTTCTGAGCA
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGACCT
* * * *
47548577 TTCGGGGATTTAGCGGCGTTTTTCAGGAAGCGCCGCTAATGCCCAGGGA
66 TTCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
* *
47548626 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAGCAAAAAAACCTAAGCCTAACGATGC
1 TTTAGCGGCGTTTTTGAGAAA--G-CG--------CC--GCAAAAAAACCTAAGCCCAACGACGC
* * * *
47548691 CGTTTTTTGATCTTTTCGGGGATTTAGCGGTGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
53 CGTTTTCTGA-CCTTTCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
* * * * * *
47548754 TTTAGCGGTGTTTTTAACAAAGCGCCGCAAAAAGACCTAAGCGCAACGATGCCGTTTTCTGACCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGACCT
*
47548819 TTCGGGGATTTAGTGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
* ** *
47548868 TTTAGCGGTGTTTTTG-GTAAAGCGCCGCAAAAAAATATAAGCCCAACGACGCCATTTTCTGACC
1 TTTAGCGGCGTTTTTGAG-AAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGACC
* * * * * * ** *
47548932 TTTCGGGGGCTTTAGCGGCATTTTTAATACAGCGCCACTAATGCTTTGGGA
65 TTTC-GGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
* * *
47548983 TTTAGCGGCATTTTTGGGAAAGCTCCGCAAAAAAA
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAA
47549018 TTATTTGTCT
Statistics
Matches: 426, Mismatches: 62, Indels: 34
0.82 0.12 0.07
Matches are distributed among these distances:
113 24 0.06
114 204 0.48
115 98 0.23
116 2 0.00
117 3 0.01
125 4 0.01
126 1 0.00
127 28 0.07
128 62 0.15
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (114 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGACCT
TTCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
Found at i:47548670 original size:13 final size:13
Alignment explanation
Indices: 47548652--47548677 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
47548642 AGAAAGCGCC
47548652 GCAAAAAAACCTA
1 GCAAAAAAACCTA
47548665 GCAAAAAAACCTA
1 GCAAAAAAACCTA
47548678 AGCCTAACGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.23, G:0.08, T:0.08
Consensus pattern (13 bp):
GCAAAAAAACCTA
Found at i:47548752 original size:242 final size:241
Alignment explanation
Indices: 47548427--47548902 Score: 675
Period size: 242 Copynumber: 2.0 Consensus size: 241
47548417 AAAGCGCTGC
* * *
47548427 AAAAACCCTAAGCCCAACGACGCCGTTTTTTGAGCATTCGGGGATTTAGCGGCGTTTTTGAGGAA
1 AAAAAACCTAAGCCCAACGACGCCGTTTTTTGAGCATTCGGGGATTTAGCGGCGTTTTTAAGAAA
* *
47548492 GCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAGAAAGCACCACAAAAAAACCTAAACCCA
66 GCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTAACAAAGCACCACAAAAAAACCTAAACCCA
* * * *
47548557 ATGACGCTATTTTCTGAGCATTCGGGGATTTAGCGGCGTTTTTCAGGAAGCGCCGCTAATGCCCA
131 ACGACGCCATTTTCTGACCATTCGGGGATTTAGCGGCGTTTTTCAGAAAGCGCCGCTAATGCCCA
47548622 GGGATTTAGCGGCGTTTTTGAG-AAAGCGCCGCAAAAAAACCTAGCA
196 GGGATTTAGCGGCGTTTTTG-GTAAAGCGCCGCAAAAAAACCTAGCA
* * * * *
47548668 AAAAAACCTAAGCCTAACGATGCCGTTTTTTGATCTTTTCGGGGATTTAGCGGTGTTTTTAAGAA
1 AAAAAACCTAAGCCCAACGACGCCGTTTTTTGAGC-ATTCGGGGATTTAGCGGCGTTTTTAAGAA
* * * * * *
47548733 AGCGCCGCTAATGCTCAGGGCTTTAGCGGTGTTTTTAACAAAGCGCCGCAAAAAGACCTAAGCGC
65 AGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTAACAAAGCACCACAAAAAAACCTAAACCC
* * * * * *
47548798 AACGATGCCGTTTTCTGACCTTTCGGGGATTTAGTGGCGTTTTTGAGAAAGCGCCGCTAATGCTC
130 AACGACGCCATTTTCTGACCATTCGGGGATTTAGCGGCGTTTTTCAGAAAGCGCCGCTAATGCCC
* *
47548863 AGGGCTTTAGCGGTGTTTTTGGTAAAGCGCCGCAAAAAAA
195 AGGGATTTAGCGGCGTTTTTGGTAAAGCGCCGCAAAAAAA
47548903 TATAAGCCCA
Statistics
Matches: 205, Mismatches: 28, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
241 32 0.16
242 173 0.84
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (241 bp):
AAAAAACCTAAGCCCAACGACGCCGTTTTTTGAGCATTCGGGGATTTAGCGGCGTTTTTAAGAAA
GCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTAACAAAGCACCACAAAAAAACCTAAACCCA
ACGACGCCATTTTCTGACCATTCGGGGATTTAGCGGCGTTTTTCAGAAAGCGCCGCTAATGCCCA
GGGATTTAGCGGCGTTTTTGGTAAAGCGCCGCAAAAAAACCTAGCA
Found at i:47552595 original size:16 final size:16
Alignment explanation
Indices: 47552574--47552634 Score: 74
Period size: 16 Copynumber: 4.0 Consensus size: 16
47552564 AAGTTCAAAT
47552574 TTCATAACTTACATAA
1 TTCATAACTTACATAA
47552590 TTCATAACTTACATAA
1 TTCATAACTTACATAA
* *
47552606 TT--TAAATT-TATAA
1 TTCATAACTTACATAA
*
47552619 TACATAACTTACATAA
1 TTCATAACTTACATAA
47552635 CTTATTAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
13 5 0.14
14 5 0.14
15 5 0.14
16 22 0.59
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.39
Consensus pattern (16 bp):
TTCATAACTTACATAA
Found at i:47552604 original size:9 final size:9
Alignment explanation
Indices: 47552576--47552638 Score: 51
Period size: 9 Copynumber: 7.0 Consensus size: 9
47552566 GTTCAAATTT
47552576 CATAACTTA
1 CATAACTTA
47552585 CATAA-TT-
1 CATAACTTA
47552592 CATAACTTA
1 CATAACTTA
*
47552601 CATAATTTA
1 CATAACTTA
* *
47552610 AATTTATA-ATA
1 CA--TA-ACTTA
47552621 CATAACTTA
1 CATAACTTA
47552630 CATAACTTA
1 CATAACTTA
47552639 TTAATATTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
7 5 0.12
8 5 0.12
9 27 0.63
11 5 0.12
12 1 0.02
ACGTcount: A:0.46, C:0.16, G:0.00, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:47552663 original size:19 final size:18
Alignment explanation
Indices: 47552639--47552692 Score: 69
Period size: 17 Copynumber: 3.1 Consensus size: 18
47552629 ACATAACTTA
47552639 TTAATATTTATATATAGTT
1 TTAATATTTATATATA-TT
47552658 TTAATA--TATATAT-TT
1 TTAATATTTATATATATT
*
47552673 TTAAAATTTATATATATT
1 TTAATATTTATATATATT
47552691 TT
1 TT
47552693 TAAAAATTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
15 7 0.23
17 14 0.45
18 4 0.13
19 6 0.19
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
TTAATATTTATATATATT
Found at i:47552667 original size:15 final size:15
Alignment explanation
Indices: 47552647--47552676 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
47552637 TATTAATATT
47552647 TATATATAGTTTTAA
1 TATATATAGTTTTAA
*
47552662 TATATATATTTTTAA
1 TATATATAGTTTTAA
47552677 AATTTATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (15 bp):
TATATATAGTTTTAA
Found at i:47552685 original size:21 final size:20
Alignment explanation
Indices: 47552662--47552700 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
47552652 ATAGTTTTAA
47552662 TATATATATTTTT-AAAATT
1 TATATATATTTTTAAAAATT
47552681 TATATATATTTTTAAAAATT
1 TATATATATTTTTAAAAATT
47552701 GATACATTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TATATATATTTTTAAAAATT
Found at i:47552752 original size:23 final size:20
Alignment explanation
Indices: 47552702--47553075 Score: 76
Period size: 18 Copynumber: 18.4 Consensus size: 20
47552692 TTAAAAATTG
47552702 ATACATTACATAACTTACATA
1 ATACA-TACATAACTTACATA
*
47552723 ACCTACATACATAAACTTACA-C
1 A--TACATACAT-AACTTACATA
*
47552745 ATA-ATACATAACTTATATA
1 ATACATACATAACTTACATA
* ** *
47552764 ACTTAAATTTATCAATCATATCATA
1 A--TACATACAT-AA-CTTA-CATA
* *
47552789 ACTTACATACATAA-ATA-TTA
1 A--TACATACATAACTTACATA
47552809 AT-CATATCATAACTTACATA
1 ATACATA-CATAACTTACATA
* *
47552829 ACCAACATA-ATGACTTACTTAATA
1 A--TACATACATAACTTAC---ATA
47552853 ACCTACATA-ATAACTTACATA
1 A--TACATACATAACTTACATA
*
47552874 ATA-ATACATAACCTACATA
1 ATACATACATAACTTACATA
* * *
47552893 A-A-TTAAATAAGTTACATA
1 ATACATACATAACTTACATA
* *
47552911 ATACACAAAAAACAAAACTTACATA
1 AT--AC---ATACATAACTTACATA
* *
47552936 ACTTACATA-ATATCCTACATA
1 A--TACATACATAACTTACATA
*
47552957 ATA-ATACATAACCTACATA
1 ATACATACATAACTTACATA
* * *
47552976 A-A-TTAAATAAGTTACATA
1 ATACATACATAACTTACATA
*
47552994 ATAC--ACA-AA--AACA-A
1 ATACATACATAACTTACATA
* *
47553008 AAACTTACATAACTTAC---
1 ATACATACATAACTTACATA
47553025 ATA-ATACATAACTTACATA
1 ATACATACATAACTTACATA
47553044 ACCTACTTAATACATAACTTACATA
1 A--TAC---ATACATAACTTACATA
47553069 ATACATA
1 ATACATA
47553076 ACTTATATAA
Statistics
Matches: 265, Mismatches: 42, Indels: 93
0.66 0.10 0.23
Matches are distributed among these distances:
14 4 0.02
15 3 0.01
16 15 0.06
17 10 0.04
18 49 0.18
19 41 0.15
20 11 0.04
21 28 0.11
22 15 0.06
23 21 0.08
24 24 0.09
25 43 0.16
27 1 0.00
ACGTcount: A:0.51, C:0.19, G:0.01, T:0.30
Consensus pattern (20 bp):
ATACATACATAACTTACATA
Found at i:47552815 original size:31 final size:31
Alignment explanation
Indices: 47552719--47552828 Score: 107
Period size: 31 Copynumber: 3.4 Consensus size: 31
47552709 ACATAACTTA
* *
47552719 CATAACCTACATACATAAA-CTTACA-CATAAT
1 CATAACTTACATACATAAATATTA-ATCAT-AT
* * *
47552750 ACATAACTTATATAACTTAAATTTATCAATCATAT
1 -CATAACTTACAT-ACATAAA--TATTAATCATAT
47552785 CATAACTTACATACATAAATATTAATCATAT
1 CATAACTTACATACATAAATATTAATCATAT
47552816 CATAACTTACATA
1 CATAACTTACATA
47552829 ACCAACATAA
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
31 24 0.37
32 10 0.15
33 12 0.18
34 11 0.17
35 3 0.05
36 5 0.08
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (31 bp):
CATAACTTACATACATAAATATTAATCATAT
Found at i:47552828 original size:9 final size:9
Alignment explanation
Indices: 47552816--47553308 Score: 257
Period size: 9 Copynumber: 57.6 Consensus size: 9
47552806 TTAATCATAT
47552816 CATAACTTA
1 CATAACTTA
**
47552825 CATAACCAA
1 CATAACTTA
*
47552834 CATAA-TGA
1 CATAACTTA
*
47552842 C-TTACTTA
1 CATAACTTA
*
47552850 -ATAACCTA
1 CATAACTTA
47552858 CATAATAACTTA
1 C--A-TAACTTA
47552870 CATAA-TAATA
1 CATAACT--TA
*
47552880 CATAACCTA
1 CATAACTTA
*
47552889 CATAAATTA
1 CATAACTTA
* *
47552898 AATAAGTTA
1 CATAACTTA
47552907 CATAA--TA
1 CATAACTTA
* ***
47552914 CACAAAAAA
1 CATAACTTA
*
47552923 CAAAACTTA
1 CATAACTTA
47552932 CATAACTTA
1 CATAACTTA
*
47552941 CATAATATCCTA
1 CAT-A-A-CTTA
47552953 CATAA-TAATA
1 CATAACT--TA
*
47552963 CATAACCTA
1 CATAACTTA
*
47552972 CATAAATTA
1 CATAACTTA
* *
47552981 AATAAGTTA
1 CATAACTTA
47552990 CATAA--TA
1 CATAACTTA
* **
47552997 CACAA-AAA
1 CATAACTTA
*
47553005 CAAAAACTTA
1 C-ATAACTTA
47553015 CATAACTTA
1 CATAACTTA
47553024 CATAA--TA
1 CATAACTTA
47553031 CATAACTTA
1 CATAACTTA
*
47553040 CATAACCTA
1 CATAACTTA
*
47553049 CTTAA--TA
1 CATAACTTA
47553056 CATAACTTA
1 CATAACTTA
47553065 CATAA--TA
1 CATAACTTA
47553072 CATAACTTA
1 CATAACTTA
* *
47553081 TATAA--GA
1 CATAACTTA
47553088 C--AACTTA
1 CATAACTTA
*
47553095 CATAATTTA
1 CATAACTTA
*
47553104 CTTAA--TA
1 CATAACTTA
47553111 CATAACTTA
1 CATAACTTA
47553120 CATAA--TA
1 CATAACTTA
47553127 CATAACTTA
1 CATAACTTA
*
47553136 CATAACCTA
1 CATAACTTA
*
47553145 CATAA--GA
1 CATAACTTA
47553152 CATAACTTA
1 CATAACTTA
* *
47553161 CATAAGTTT
1 CATAACTTA
*
47553170 CGTAA--TA
1 CATAACTTA
* *
47553177 CACAATTTA
1 CATAACTTA
47553186 CATAACTTA
1 CATAACTTA
*
47553195 CATAATTTA
1 CATAACTTA
*
47553204 CTTAA--TA
1 CATAACTTA
47553211 CATAACTTA
1 CATAACTTA
47553220 CATAACTTA
1 CATAACTTA
47553229 CATAA--TA
1 CATAACTTA
47553236 CATAACTTA
1 CATAACTTA
*
47553245 CATAATTTA
1 CATAACTTA
*
47553254 CTTAA--TA
1 CATAACTTA
47553261 CATAACTTA
1 CATAACTTA
*
47553270 CATAATTTA
1 CATAACTTA
*
47553279 CTTAA--TA
1 CATAACTTA
47553286 CATAACTTA
1 CATAACTTA
47553295 CATAACTTA
1 CATAACTTA
47553304 CATAA
1 CATAA
47553309 ATATATGATG
Statistics
Matches: 372, Mismatches: 66, Indels: 92
0.70 0.12 0.17
Matches are distributed among these distances:
5 2 0.01
7 85 0.23
8 12 0.03
9 238 0.64
10 19 0.05
11 3 0.01
12 13 0.03
ACGTcount: A:0.49, C:0.19, G:0.01, T:0.31
Consensus pattern (9 bp):
CATAACTTA
Found at i:47552863 original size:12 final size:12
Alignment explanation
Indices: 47552826--47552877 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
47552816 CATAACTTAC
*
47552826 ATAACCAACATA
1 ATAACCTACATA
* * *
47552838 ATGACTTACTTA
1 ATAACCTACATA
47552850 ATAACCTACATA
1 ATAACCTACATA
*
47552862 ATAACTTACATA
1 ATAACCTACATA
47552874 ATAA
1 ATAA
47552878 TACATAACCT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.50, C:0.19, G:0.02, T:0.29
Consensus pattern (12 bp):
ATAACCTACATA
Found at i:47552876 original size:24 final size:24
Alignment explanation
Indices: 47552826--47552884 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
47552816 CATAACTTAC
* * *
47552826 ATAACCAACATAATGACTTACTTA
1 ATAACCTACATAATAACTTACATA
47552850 ATAACCTACATAATAACTTACATA
1 ATAACCTACATAATAACTTACATA
47552874 ATAA--TACATAA
1 ATAACCTACATAA
47552885 CCTACATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
22 7 0.22
24 25 0.78
ACGTcount: A:0.51, C:0.19, G:0.02, T:0.29
Consensus pattern (24 bp):
ATAACCTACATAATAACTTACATA
Found at i:47552912 original size:49 final size:48
Alignment explanation
Indices: 47552856--47552996 Score: 137
Period size: 40 Copynumber: 3.2 Consensus size: 48
47552846 CTTAATAACC
47552856 TACATAATAACTTACATAATAATACATAACCTACATAAATTAAATAAGT
1 TACATAATAAC-TACATAATAATACATAACCTACATAAATTAAATAAGT
* * * *
47552905 TACATAAT-AC-ACA-AA-AA-ACAAAACTTACATAACTT--A-CA--
1 TACATAATAACTACATAATAATACATAACCTACATAAATTAAATAAGT
*
47552943 TA-AT-AT-CCTACATAATAATACATAACCTACATAAATTAAATAAGT
1 TACATAATAACTACATAATAATACATAACCTACATAAATTAAATAAGT
47552988 TACATAATA
1 TACATAATA
47552997 CACAAAAACA
Statistics
Matches: 71, Mismatches: 9, Indels: 25
0.68 0.09 0.24
Matches are distributed among these distances:
36 3 0.04
37 5 0.07
38 4 0.06
39 2 0.03
40 16 0.23
41 1 0.01
42 1 0.01
43 16 0.23
44 2 0.03
45 4 0.06
46 5 0.07
47 2 0.03
48 2 0.03
49 8 0.11
ACGTcount: A:0.54, C:0.16, G:0.01, T:0.28
Consensus pattern (48 bp):
TACATAATAACTACATAATAATACATAACCTACATAAATTAAATAAGT
Found at i:47552942 original size:34 final size:34
Alignment explanation
Indices: 47552899--47553032 Score: 90
Period size: 34 Copynumber: 3.5 Consensus size: 34
47552889 CATAAATTAA
*
47552899 ATAAGTTACATAATACACAAAAAACAAAACTTAC
1 ATAACTTACATAATACACAAAAAACAAAACTTAC
*
47552933 ATAACTTACATAATATCCTACATAATAATACATAACCTACATAAATTAA
1 ATAACTTACATAATA--C-ACA-AA-AA-ACA-AA---AC-T----TAC
*
47552982 ATAAGTTACATAATACAC-AAAAACAAAAACTTAC
1 ATAACTTACATAATACACAAAAAAC-AAAACTTAC
47553016 ATAACTTACATAATACA
1 ATAACTTACATAATACA
47553033 TAACTTACAT
Statistics
Matches: 79, Mismatches: 5, Indels: 32
0.68 0.04 0.28
Matches are distributed among these distances:
34 32 0.41
36 1 0.01
37 3 0.04
38 3 0.04
39 4 0.05
40 3 0.04
41 2 0.03
42 4 0.05
43 3 0.04
44 4 0.05
45 1 0.01
46 2 0.03
47 1 0.01
49 16 0.20
ACGTcount: A:0.55, C:0.18, G:0.01, T:0.25
Consensus pattern (34 bp):
ATAACTTACATAATACACAAAAAACAAAACTTAC
Found at i:47552957 original size:83 final size:83
Alignment explanation
Indices: 47552845--47553030 Score: 322
Period size: 83 Copynumber: 2.3 Consensus size: 83
47552835 ATAATGACTT
* *
47552845 ACTTA-ATAACCTACATAATAACTTACATAATAATACATAACCTACATAAATTAAATAAGTTACA
1 ACTTACATAACTTACATAATAACCTACATAATAATACATAACCTACATAAATTAAATAAGTTACA
47552909 TAATACACAAAAA-ACAAA
66 TAATACACAAAAACA-AAA
*
47552927 ACTTACATAACTTACATAATATCCTACATAATAATACATAACCTACATAAATTAAATAAGTTACA
1 ACTTACATAACTTACATAATAACCTACATAATAATACATAACCTACATAAATTAAATAAGTTACA
47552992 TAATACACAAAAACAAAA
66 TAATACACAAAAACAAAA
47553010 ACTTACATAACTTACATAATA
1 ACTTACATAACTTACATAATA
47553031 CATAACTTAC
Statistics
Matches: 99, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
82 5 0.05
83 93 0.94
84 1 0.01
ACGTcount: A:0.54, C:0.18, G:0.01, T:0.27
Consensus pattern (83 bp):
ACTTACATAACTTACATAATAACCTACATAATAATACATAACCTACATAAATTAAATAAGTTACA
TAATACACAAAAACAAAA
Found at i:47553034 original size:16 final size:16
Alignment explanation
Indices: 47552874--47553308 Score: 191
Period size: 16 Copynumber: 26.2 Consensus size: 16
47552864 AACTTACATA
*
47552874 ATAATACATAACCTAC
1 ATAATACATAACTTAC
* *
47552890 ATAAATTAAATAAGTTAC
1 AT-AA-TACATAACTTAC
* ***
47552908 ATAATACACAAAAAAC
1 ATAATACATAACTTAC
*
47552924 AAAACTTACATAACTTAC
1 ATAA--TACATAACTTAC
* *
47552942 ATAATATCCT-ACATA-
1 ATAATA-CATAACTTAC
*
47552957 ATAATACATAACCTAC
1 ATAATACATAACTTAC
* *
47552973 ATAAATTAAATAAGTTAC
1 AT-AA-TACATAACTTAC
* **
47552991 ATAATACACAA-AAAC
1 ATAATACATAACTTAC
*
47553006 AAAAACTTACATAACTTAC
1 -ATAA--TACATAACTTAC
47553025 ATAATACATAACTTAC
1 ATAATACATAACTTAC
47553041 AT-A-AC----C-TAC
1 ATAATACATAACTTAC
*
47553050 TTAATACATAACTTAC
1 ATAATACATAACTTAC
*
47553066 ATAATACATAACTTAT
1 ATAATACATAACTTAC
*
47553082 ATAAGACAACTTACATAATTTAC
1 AT-----AA--TACATAACTTAC
*
47553105 TTAATACATAACTTAC
1 ATAATACATAACTTAC
47553121 ATAATACATAACTTAC
1 ATAATACATAACTTAC
*
47553137 ATAACCTACATAA--GAC
1 ATAA--TACATAACTTAC
* *
47553153 ATAACTTACATAAGTTTC
1 ATAA--TACATAACTTAC
* * *
47553171 GTAATACACAATTTAC
1 ATAATACATAACTTAC
*
47553187 ATAACTTACATAATTTAC
1 ATAA--TACATAACTTAC
*
47553205 TTAATACATAACTTAC
1 ATAATACATAACTTAC
47553221 ATAACTTACATAA--TAC
1 ATAA--TACATAACTTAC
*
47553237 ATAACTTACATAATTTAC
1 ATAA--TACATAACTTAC
*
47553255 TTAATACATAACTTAC
1 ATAATACATAACTTAC
*
47553271 ATAATTTACTTAA--TAC
1 ATAA--TACATAACTTAC
47553287 ATAACTTACATAACTTAC
1 ATAA--TACATAACTTAC
47553305 ATAA
1 ATAA
47553309 ATATATGATG
Statistics
Matches: 321, Mismatches: 57, Indels: 80
0.70 0.12 0.17
Matches are distributed among these distances:
9 4 0.01
10 2 0.01
11 2 0.01
14 4 0.01
15 14 0.04
16 175 0.55
17 10 0.03
18 95 0.30
19 2 0.01
21 2 0.01
23 11 0.03
ACGTcount: A:0.49, C:0.18, G:0.01, T:0.31
Consensus pattern (16 bp):
ATAATACATAACTTAC
Found at i:47553065 original size:50 final size:50
Alignment explanation
Indices: 47553009--47553304 Score: 302
Period size: 50 Copynumber: 5.8 Consensus size: 50
47552999 CAAAAACAAA
*
47553009 AACTTACATAACTTACATAATACATAACTTACATAACCTACTTAATACAT
1 AACTTACATAACTTACATAATACATAACTTACATAACTTACTTAATACAT
* * * *
47553059 AACTTACATAA--TACATAACTTATATAA--GAC--AACTTACATAATTTACTT
1 AACTTACATAACTTACATAA--TACATAACTTACATAACTTACTTAA--TACAT
* * *
47553107 AA--TACATAACTTACATAATACATAACTTACATAACCTACATAAGACAT
1 AACTTACATAACTTACATAATACATAACTTACATAACTTACTTAATACAT
* *
47553155 AACTTACATAAGTTTCGTAATACACAATTTACATAACTTACATAATTTACTTAATACAT
1 AACTTACATAA----C-T--TACATAA--TACATAACTTACATAACTTACTTAATACAT
*
47553214 AACTTACATAACTTACATAATACATAACTTACATAATTTACTTAATACAT
1 AACTTACATAACTTACATAATACATAACTTACATAACTTACTTAATACAT
* *
47553264 AACTTACATAATTTACTTAATACATAACTTACATAACTTAC
1 AACTTACATAACTTACATAATACATAACTTACATAACTTAC
47553305 ATAAATATAT
Statistics
Matches: 206, Mismatches: 19, Indels: 42
0.77 0.07 0.16
Matches are distributed among these distances:
46 22 0.11
48 29 0.14
50 102 0.50
52 6 0.03
54 2 0.01
55 2 0.01
57 6 0.03
59 37 0.18
ACGTcount: A:0.46, C:0.19, G:0.01, T:0.34
Consensus pattern (50 bp):
AACTTACATAACTTACATAATACATAACTTACATAACTTACTTAATACAT
Found at i:47553099 original size:55 final size:56
Alignment explanation
Indices: 47553013--47553140 Score: 204
Period size: 55 Copynumber: 2.3 Consensus size: 56
47553003 AACAAAAACT
*
47553013 TACATAACTTACATAATACATAACTTACATAACCTACTTAATACATAACTTACATAA
1 TACATAACTTACATAAGACA-AACTTACATAACCTACTTAATACATAACTTACATAA
* **
47553070 TACATAACTTATATAAGAC-AACTTACATAATTTACTTAATACATAACTTACATAA
1 TACATAACTTACATAAGACAAACTTACATAACCTACTTAATACATAACTTACATAA
47553125 TACATAACTTACATAA
1 TACATAACTTACATAA
47553141 CCTACATAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
55 49 0.74
57 17 0.26
ACGTcount: A:0.48, C:0.19, G:0.01, T:0.33
Consensus pattern (56 bp):
TACATAACTTACATAAGACAAACTTACATAACCTACTTAATACATAACTTACATAA
Found at i:47553276 original size:25 final size:25
Alignment explanation
Indices: 47553013--47553308 Score: 251
Period size: 25 Copynumber: 12.0 Consensus size: 25
47553003 AACAAAAACT
47553013 TACATAACTTACATAA--TACATAA
1 TACATAACTTACATAATTTACATAA
* *
47553036 CTTACATAACCTACTTAA--TACATAA
1 --TACATAACTTACATAATTTACATAA
* *
47553061 CTTACATAA--TACATAACTTATATAA
1 --TACATAACTTACATAATTTACATAA
* *
47553086 GAC--AACTTACATAATTTACTTAA
1 TACATAACTTACATAATTTACATAA
47553109 TACATAACTTACATAA--TACATAA
1 TACATAACTTACATAATTTACATAA
* *
47553132 CTTACATAACCTACATAA--GACATAA
1 --TACATAACTTACATAATTTACATAA
* * * *
47553157 CTTACATAAGTTTCGTAA--TACACAA
1 --TACATAACTTACATAATTTACATAA
*
47553182 TTTACATAACTTACATAATTTACTTAA
1 --TACATAACTTACATAATTTACATAA
*
47553209 TACATAACTTACATAACTTACATAA
1 TACATAACTTACATAATTTACATAA
*
47553234 TACATAACTTACATAATTTACTTAA
1 TACATAACTTACATAATTTACATAA
*
47553259 TACATAACTTACATAATTTACTTAA
1 TACATAACTTACATAATTTACATAA
*
47553284 TACATAACTTACATAACTTACATAA
1 TACATAACTTACATAATTTACATAA
47553309 ATATATGATG
Statistics
Matches: 231, Mismatches: 30, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
21 2 0.01
23 29 0.13
25 195 0.84
27 5 0.02
ACGTcount: A:0.46, C:0.19, G:0.01, T:0.34
Consensus pattern (25 bp):
TACATAACTTACATAATTTACATAA
Found at i:47558834 original size:21 final size:21
Alignment explanation
Indices: 47558808--47558856 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
47558798 CTACAACTTA
*
47558808 AAGCAGATGCGGCATCGAGAG
1 AAGCAGATGCGGCAGCGAGAG
* *
47558829 AAGCAGATGCTGCAGCGAGGG
1 AAGCAGATGCGGCAGCGAGAG
47558850 AAGCAGA
1 AAGCAGA
47558857 GCAGAGCAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.18, G:0.39, T:0.08
Consensus pattern (21 bp):
AAGCAGATGCGGCAGCGAGAG
Found at i:47559320 original size:43 final size:43
Alignment explanation
Indices: 47559205--47559432 Score: 228
Period size: 43 Copynumber: 5.3 Consensus size: 43
47559195 ACCAAACAAA
* * *
47559205 TAGCGGCGTTTGTGTAAAAA-TGCCGCTAAAAGAACATGA-CATT
1 TAGCGGCGTTTATGGAAAAAGCGCCGCT-AAAGAACATGATC-TT
* *** *
47559248 TA-CTGGTGTTTGCAGAAGAAGCGCCGCTAAAGAACATGATCTT
1 TAGC-GGCGTTTATGGAAAAAGCGCCGCTAAAGAACATGATCTT
* *
47559291 TAGCGGCGTTTATGGAAAAAGCACTGCTAAAGAACATGATCTT
1 TAGCGGCGTTTATGGAAAAAGCGCCGCTAAAGAACATGATCTT
* * * *
47559334 TAGCGGCATTTGTGAAAAAAGCGCCGCTAAGGAACATGATCTT
1 TAGCGGCGTTTATGGAAAAAGCGCCGCTAAAGAACATGATCTT
* * * * * *
47559377 TAGCAGCGTTTGTTGAAAAAGCGCCGTTAAAGAACATAACCTT
1 TAGCGGCGTTTATGGAAAAAGCGCCGCTAAAGAACATGATCTT
47559420 TAGCGGCGTTTAT
1 TAGCGGCGTTTAT
47559433 AAAAATATTA
Statistics
Matches: 152, Mismatches: 29, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
42 1 0.01
43 143 0.94
44 8 0.05
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (43 bp):
TAGCGGCGTTTATGGAAAAAGCGCCGCTAAAGAACATGATCTT
Found at i:47559524 original size:21 final size:22
Alignment explanation
Indices: 47559482--47559524 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
47559472 TAGTGGCGCT
* **
47559482 AAAAAGCGCTGCTAAAGGCCTG
1 AAAAAGCGCCGCTAAAAACCTG
47559504 AAAAA-CGCCGCTAAAAACCTG
1 AAAAAGCGCCGCTAAAAACCTG
47559525 TTTTGGTGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.42, C:0.26, G:0.21, T:0.12
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAACCTG
Found at i:47560277 original size:34 final size:34
Alignment explanation
Indices: 47560154--47560338 Score: 235
Period size: 34 Copynumber: 5.4 Consensus size: 34
47560144 TTTATGGCAA
47560154 GTACATGCGAACTGTATATGTGTGTGAACCCTAG
1 GTACATGCGAACTGTATATGTGTGTGAACCCTAG
* *
47560188 GTGACATGTGAACTGTATATGTGTATGAACCCTAG
1 GT-ACATGCGAACTGTATATGTGTGTGAACCCTAG
** * *
47560223 GTAACATATGGACTGTATATGTGTGCGAACCCTAG
1 GT-ACATGCGAACTGTATATGTGTGTGAACCCTAG
*
47560258 GTACATGCGAACTGTATATGTGTGCGAACCCTAG
1 GTACATGCGAACTGTATATGTGTGTGAACCCTAG
* * * * *
47560292 GTAGATGCGAATTGTATATATATGTGAACCCTAT
1 GTACATGCGAACTGTATATGTGTGTGAACCCTAG
*
47560326 GTACATGTGAACT
1 GTACATGCGAACT
47560339 ATGCGAAACC
Statistics
Matches: 131, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
34 69 0.53
35 62 0.47
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (34 bp):
GTACATGCGAACTGTATATGTGTGTGAACCCTAG
Found at i:47560287 original size:69 final size:70
Alignment explanation
Indices: 47560164--47560294 Score: 219
Period size: 69 Copynumber: 1.9 Consensus size: 70
47560154 GTACATGCGA
* * *
47560164 ACTGTATATGTGTGTGAACCCTAGGTGACATGTGAACTGTATATGTGTATGAACCCTAGGTAACA
1 ACTGTATATGTGTGCGAACCCTAGGTGACATGCGAACTGTATATGTGTACGAACCCTAGGTAACA
47560229 TATGG
66 TATGG
*
47560234 ACTGTATATGTGTGCGAACCCTAGGT-ACATGCGAACTGTATATGTGTGCGAACCCTAGGTA
1 ACTGTATATGTGTGCGAACCCTAGGTGACATGCGAACTGTATATGTGTACGAACCCTAGGTA
47560295 GATGCGAATT
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 32 0.56
70 25 0.44
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (70 bp):
ACTGTATATGTGTGCGAACCCTAGGTGACATGCGAACTGTATATGTGTACGAACCCTAGGTAACA
TATGG
Found at i:47560443 original size:24 final size:24
Alignment explanation
Indices: 47560413--47560458 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
47560403 ATGTACATGC
47560413 ATATATGATATATGCGAACCCTAT
1 ATATATGATATATGCGAACCCTAT
*
47560437 ATATATGTTATATGCGAACCCT
1 ATATATGATATATGCGAACCCT
47560459 TAGGTGAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (24 bp):
ATATATGATATATGCGAACCCTAT
Found at i:47578016 original size:20 final size:20
Alignment explanation
Indices: 47577991--47578033 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
47577981 AAGTAACTAA
47577991 TAGTACTTTTGATTTTTATC
1 TAGTACTTTTGATTTTTATC
47578011 TAGTACTTTTGATTTTTATC
1 TAGTACTTTTGATTTTTATC
47578031 TAG
1 TAG
47578034 ATAATGTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.09, G:0.12, T:0.58
Consensus pattern (20 bp):
TAGTACTTTTGATTTTTATC
Found at i:47580906 original size:42 final size:41
Alignment explanation
Indices: 47580816--47581056 Score: 203
Period size: 42 Copynumber: 5.7 Consensus size: 41
47580806 AAAAACGCCA
* * * *
47580816 CTAAAGAACATGGTCTTTAGCGGTGTTTTTTATAAGCGCCA
1 CTAAAGAACATGATCTTTAGCGGCGTTTTTTATAAGCACCG
*
47580857 CTAAAGAACATGGTCTTTAGCGGCGTTTTTTTATAAGCACCG
1 CTAAAGAACATGATCTTTAGCGGCG-TTTTTTATAAGCACCG
* * *
47580899 CTGAAGAACATGATCTTTAGTGGCGTTTTTTATTAAGCATCG
1 CTAAAGAACATGATCTTTAGCGGCGTTTTTTA-TAAGCACCG
* * * * * * **
47580941 CGAAAGAAGATGTTCTTTAACGGCGCTTTGTATAAAAATGCCG
1 CTAAAGAACATGATCTTTAGCGGCGTTTTTTATAAGCA--CCG
* * * * * * *
47580984 CTAGAGATCATAATCTTTCGCAGCGCTTTTTTTATAAACGCCG
1 CTAAAGAACATGATCTTTAGC-G-GCGTTTTTTATAAGCACCG
* *
47581027 CTAAAGAACATGTTCTTTAGCGGCGCTTTT
1 CTAAAGAACATGATCTTTAGCGGCGTTTTT
47581057 GTACAAAAAT
Statistics
Matches: 156, Mismatches: 38, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
41 41 0.26
42 69 0.44
43 34 0.22
44 1 0.01
45 11 0.07
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (41 bp):
CTAAAGAACATGATCTTTAGCGGCGTTTTTTATAAGCACCG
Found at i:47586675 original size:7 final size:7
Alignment explanation
Indices: 47586665--47586701 Score: 56
Period size: 7 Copynumber: 5.0 Consensus size: 7
47586655 TGACATATTT
47586665 TTATGTA
1 TTATGTA
47586672 TTATGTAA
1 TTATGT-A
47586680 GTTATGTA
1 -TTATGTA
47586688 TTATGTA
1 TTATGTA
47586695 TTATGTA
1 TTATGTA
47586702 AGTACTGTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 20 0.71
8 2 0.07
9 6 0.21
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.54
Consensus pattern (7 bp):
TTATGTA
Found at i:47586686 original size:9 final size:9
Alignment explanation
Indices: 47586672--47587151 Score: 444
Period size: 9 Copynumber: 54.4 Consensus size: 9
47586662 TTTTTATGTA
47586672 TTATGTAAG
1 TTATGTAAG
47586681 TTATGT-A-
1 TTATGTAAG
47586688 TTATGT-A-
1 TTATGTAAG
47586695 TTATGTAAG
1 TTATGTAAG
47586704 -TACTGTAAG
1 TTA-TGTAAG
*
47586713 TAATGTAAG
1 TTATGTAAG
47586722 TTATGTAAG
1 TTATGTAAG
*
47586731 TAATGT-A-
1 TTATGTAAG
47586738 TTATGTAAG
1 TTATGTAAG
* *
47586747 TTGTGTATAATA
1 TTATG--TAA-G
47586759 TTAATGTAAG
1 TT-ATGTAAG
47586769 TTATGTAAG
1 TTATGTAAG
* *
47586778 TTATTTAAT
1 TTATGTAAG
*
47586787 TTTTGTAAG
1 TTATGTAAG
47586796 TTATGTAA-
1 TTATGTAAG
47586804 TTAATGTAAG
1 TT-ATGTAAG
* *
47586814 TTATTTAAT
1 TTATGTAAG
*
47586823 TTTTGTAAG
1 TTATGTAAG
47586832 TTATGTAA-
1 TTATGTAAG
47586840 TTAATGTAAG
1 TT-ATGTAAG
* *
47586850 TTATTTAAT
1 TTATGTAAG
47586859 TTATGTAAG
1 TTATGTAAG
47586868 TTATGTAAG
1 TTATGTAAG
*
47586877 TTACT-TAAT
1 TTA-TGTAAG
47586886 TTATGTAAG
1 TTATGTAAG
47586895 TTATGTAAG
1 TTATGTAAG
* *
47586904 TTATTTAAT
1 TTATGTAAG
47586913 TTATGTAAG
1 TTATGTAAG
47586922 TTATGTAAG
1 TTATGTAAG
47586931 ---T-TAAG
1 TTATGTAAG
* *
47586936 TTATTTAAT
1 TTATGTAAG
*
47586945 TTTTGTAAG
1 TTATGTAAG
47586954 TTATGTAA-
1 TTATGTAAG
47586962 TTAATGTAAG
1 TT-ATGTAAG
* *
47586972 TTATTTAAT
1 TTATGTAAG
47586981 TTATGTAAG
1 TTATGTAAG
47586990 TTATGTAAG
1 TTATGTAAG
* *
47586999 TTATTTAAT
1 TTATGTAAG
47587008 TTATGTAAG
1 TTATGTAAG
47587017 TTATGTAAG
1 TTATGTAAG
47587026 TTATGTAAG
1 TTATGTAAG
*
47587035 ---T-TAAT
1 TTATGTAAG
47587040 TTATGTAAG
1 TTATGTAAG
47587049 TTATGTAAG
1 TTATGTAAG
*
47587058 TTATTTAA-
1 TTATGTAAG
47587066 TTCATGTAAG
1 TT-ATGTAAG
47587076 TTATGTAAG
1 TTATGTAAG
* *
47587085 TTATTTAAT
1 TTATGTAAG
*
47587094 TTATGTAAT
1 TTATGTAAG
47587103 TTATGTAAG
1 TTATGTAAG
* *
47587112 TTATTTAAT
1 TTATGTAAG
*
47587121 TTTTGTAAG
1 TTATGTAAG
47587130 TTATGTAA-
1 TTATGTAAG
47587138 TTAATGTAAG
1 TT-ATGTAAG
47587148 TTAT
1 TTAT
47587152 TTAATTTGTG
Statistics
Matches: 384, Mismatches: 57, Indels: 60
0.77 0.11 0.12
Matches are distributed among these distances:
5 7 0.02
6 2 0.01
7 18 0.05
8 19 0.05
9 314 0.82
10 14 0.04
11 6 0.02
12 2 0.01
13 2 0.01
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.50
Consensus pattern (9 bp):
TTATGTAAG
Found at i:47590923 original size:115 final size:113
Alignment explanation
Indices: 47590709--47590961 Score: 287
Period size: 115 Copynumber: 2.2 Consensus size: 113
47590699 ATGCATGGTT
* *
47590709 AAGACCAAAACTCTGCGTTTTGGTTAGGATATTTTTCGGCGCTTCTCAAAAAGCGCCGCTAATAC
1 AAGA-CAAAACTCTGCGTTTTGGTTAAGATATTTTTCAGCGCTTCTCAAAAAGCGCCGCTAATAC
* * * *
47590774 TATGCTTTAGCGGCGATTTCTCGTGGATGCCACTAATTCCAGTATACATC
65 TATGCTTTAGCGGCGATTTCCCAT-GAAGCCACTAATTCCAATATACATC
* * * * *
47590824 AAGACTTAAACGCTGCGTTTTGGTTAATATATTTTGT-AGTGCTTCTCAAAATGCGCCGCTAATA
1 AAGAC-AAAACTCTGCGTTTTGGTTAAGATATTTT-TCAGCGCTTCTCAAAAAGCGCCGCTAATA
* * * *
47590888 GTATGCTTTAGCGGTG-TTCTCCCAT-AAGCGTCACTAATTCTAATATACCTC
64 CTATGCTTTAGCGGCGATT-TCCCATGAAGC--CACTAATTCCAATATACATC
47590939 AAGACAAAACTCTGCGTTTTGGT
1 AAGACAAAACTCTGCGTTTTGGT
47590962 GAGGTACACT
Statistics
Matches: 116, Mismatches: 17, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
113 3 0.03
114 19 0.16
115 93 0.80
116 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (113 bp):
AAGACAAAACTCTGCGTTTTGGTTAAGATATTTTTCAGCGCTTCTCAAAAAGCGCCGCTAATACT
ATGCTTTAGCGGCGATTTCCCATGAAGCCACTAATTCCAATATACATC
Found at i:47591175 original size:113 final size:112
Alignment explanation
Indices: 47590971--47591289 Score: 329
Period size: 113 Copynumber: 2.8 Consensus size: 112
47590961 TGAGGTACAC
* * * * *
47590971 TATGCTTTAGCGGCGTTTTCCAGTATGTGCCACTAATTACT-GTATACATCAAGACAAAAACGTT
1 TATGCTTTAGCGGCGTTTTCC-CTTTGCGCCACTAATT-CTAGTATACCTCAAGAC-CAAAC-TT
* * * *
47591035 GCGTTTTGGTTACGAAATTTTGCGGCGCTTCTC-CAAACGCGCCGCTAATAG
62 GCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAA-ACGCCACTAATAG
* *
47591086 TATGCCTTAGCGGCGTGTTCCCTTTGCGCCACTAATTCTAGTATACCTCAAGACCAAACTCTGCG
1 TATGCTTTAGCGGCGTTTTCCCTTTGCGCCACTAATTCTAGTATACCTCAAGACCAAACT-TGCG
* * *
47591151 TTTTGGTTAAGATATTTTGTGGCGCTTCTCACAAAATGCCACTAATAT
65 TTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAACGCCACTAATAG
* * * ** *
47591199 TATGCTTTAGCGGCGTTTTCCCTTAAGCGCCACTAACTGTAACATACAC-CAAGACCAAAATGGT
1 TATGCTTTAGCGGCGTTTTCCCTT-TGCGCCACTAATTCTAGTATAC-CTCAAGACCAAACT--T
* *
47591263 GCGCTTTGGTTAGGATATTTTGCGGCG
62 GCGTTTTGGTTAAGATATTTTGCGGCG
47591290 TTTACCCATA
Statistics
Matches: 172, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
112 1 0.01
113 68 0.40
114 58 0.34
115 45 0.26
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (112 bp):
TATGCTTTAGCGGCGTTTTCCCTTTGCGCCACTAATTCTAGTATACCTCAAGACCAAACTTGCGT
TTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAACGCCACTAATAG
Found at i:47591333 original size:76 final size:75
Alignment explanation
Indices: 47591208--47591364 Score: 172
Period size: 76 Copynumber: 2.1 Consensus size: 75
47591198 TTATGCTTTA
* * * * *
47591208 GCGGCGTTTTCCCTTAAGCGCCACTAACTGTAACATACACCAAGACCAAAATGGTGCGCTTTGGT
1 GCGGCGTTTACCCATAAGCGCCACAAACTCTAACATACACCAAGACCAAAAT-CTGCGCTTTGGT
** *
47591273 TAGGATATTTT
65 TAACATATATT
* * * * *
47591284 GCGGCGTTTACCCATAAGCGCCACAAATTCTAATATAC-CTCTAGACCAAACTCTGCGTTTTGGT
1 GCGGCGTTTACCCATAAGCGCCACAAACTCTAACATACAC-CAAGACCAAAATCTGCGCTTTGGT
47591348 TAACATATATT
65 TAACATATATT
47591359 GCGGCG
1 GCGGCG
47591365 CTTTTCGTAA
Statistics
Matches: 67, Mismatches: 13, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
75 25 0.37
76 42 0.63
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (75 bp):
GCGGCGTTTACCCATAAGCGCCACAAACTCTAACATACACCAAGACCAAAATCTGCGCTTTGGTT
AACATATATT
Found at i:47592810 original size:15 final size:17
Alignment explanation
Indices: 47592782--47592813 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
47592772 CATCAGACTA
47592782 TTTTAGATATAGTTTTT
1 TTTTAGATATAGTTTTT
47592799 TTTTA-ATA-AGTTTTT
1 TTTTAGATATAGTTTTT
47592814 ATTGGTTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (17 bp):
TTTTAGATATAGTTTTT
Found at i:47595049 original size:11 final size:11
Alignment explanation
Indices: 47595025--47595066 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
47595015 AACTCATCCT
47595025 CTCTCAAATTTC
1 CTCTC-AATTTC
*
47595037 CTCTCAGTTTC
1 CTCTCAATTTC
*
47595048 CTCTAAATTTC
1 CTCTCAATTTC
47595059 CTCTCAAT
1 CTCTCAAT
47595067 CTGCTCTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
11 21 0.81
12 5 0.19
ACGTcount: A:0.21, C:0.33, G:0.02, T:0.43
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:47595082 original size:22 final size:23
Alignment explanation
Indices: 47595025--47595079 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
47595015 AACTCATCCT
* * *
47595025 CTCTCAAATTTCCTCTCAGTTTC
1 CTCTTAAATTTCCTCTCAATCTC
*
47595048 CTC-TAAATTTCCTCTCAATCTG
1 CTCTTAAATTTCCTCTCAATCTC
47595070 CTCTTAAATT
1 CTCTTAAATT
47595080 CCTTCCAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 18 0.67
23 9 0.33
ACGTcount: A:0.22, C:0.31, G:0.04, T:0.44
Consensus pattern (23 bp):
CTCTTAAATTTCCTCTCAATCTC
Found at i:47596996 original size:18 final size:18
Alignment explanation
Indices: 47596969--47597008 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
47596959 CAGGTGCGTT
* *
47596969 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
47596987 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
47597005 TCCT
1 TCCT
47597009 TTTCCGAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:47597525 original size:22 final size:22
Alignment explanation
Indices: 47597475--47598188 Score: 523
Period size: 22 Copynumber: 32.3 Consensus size: 22
47597465 TTGAGTTATT
47597475 ACTTAAAAACCCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
* *
47597498 AATTAAAAATCCTAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
* **
47597520 ACTT-AAAACTCTAAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
* *
47597543 A-TTAAAAACCCTAAGCCTTTAA
1 ACTTAAAAACCCTAAACCCTT-A
*
47597565 AATTAAAAACCCTAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
*
47597587 ACTTAAAAA-CCTTAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
47597608 ACTT-AAAACCCT-AACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
*
47597629 AATTAAAAACCCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
* *
47597652 AATTAAAAACCATAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
* **
47597674 ACTTAAAAACTCTAAACAATTTA
1 ACTTAAAAACCCTAAAC-CCTTA
* *
47597697 A-TTAAAAACCCCAAACCCTAAA
1 ACTTAAAAACCCTAAACCCT-TA
*
47597719 ACCCTAAACCCTAAACCCT-AACCCTTA
1 A--CTTAA----AAACCCTAAACCCTTA
* *
47597746 ACTTAAAAACTCTAAAACCCTAA
1 ACTTAAAAACCCT-AAACCCTTA
*
47597769 AC-TAATTTAAA-CCTAAAACCCTAA
1 ACTTAA---AAACCCT-AAACCCTTA
47597793 ACCTT--AAACCCTTAAA--C---
1 A-CTTAAAAACCC-TAAACCCTTA
*
47597810 --TTAAAAACCCTAA-CCATTA
1 ACTTAAAAACCCTAAACCCTTA
*
47597829 ACTTAAAAACCTTAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
* **
47597851 ACTTAAAAACTCTAAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
47597875 A-TTAAAAACCCTAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
*
47597896 ACTTAAAAACCCTAACCCCTTA
1 ACTTAAAAACCCTAAACCCTTA
* **
47597918 ACTTAAAAACCTTAAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
47597942 A-TTAAAAACCCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
*
47597964 ATTTAAAAACCCTAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
* **
47597986 ACTTAAAAACTCTAAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
47598010 A-TTAAAAACCCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
**
47598032 ACTTAAAAACCCT-AACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
*
47598055 A-TTGAAAACCCTAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
*
47598076 ACTTAAAAACCCT-AACCCTCA
1 ACTTAAAAACCCTAAACCCTTA
*
47598097 ACTTAAAAA-CCTTAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
*
47598118 ACTTAAAAACCCTTAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
* ** *
47598140 ACTTTAAAACTTTAAA--CTAGA
1 ACTTAAAAACCCTAAACCCT-TA
* *
47598161 ACTTAAAAATCGT-AACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
47598182 ACTTAAA
1 ACTTAAA
47598189 TTTATTTGAT
Statistics
Matches: 558, Mismatches: 76, Indels: 116
0.74 0.10 0.15
Matches are distributed among these distances:
14 2 0.00
15 3 0.01
16 6 0.01
20 19 0.03
21 119 0.21
22 186 0.33
23 170 0.30
24 27 0.05
25 11 0.02
26 1 0.00
27 2 0.00
28 6 0.01
29 6 0.01
ACGTcount: A:0.47, C:0.26, G:0.01, T:0.26
Consensus pattern (22 bp):
ACTTAAAAACCCTAAACCCTTA
Found at i:47597585 original size:67 final size:67
Alignment explanation
Indices: 47597477--47598128 Score: 534
Period size: 67 Copynumber: 9.8 Consensus size: 67
47597467 GAGTTATTAC
*
47597477 TTAAAAACCCTAAACCCTTAAAATTAAAAATCCTAAACCCTTAACTT-AAAACTCTAAACTAATT
1 TTAAAAACCCTAAACCCTTAAAATTAAAAACCCTAAACCCTTAACTTAAAAAC-CTAAACTAATT
47597541 TAA
65 TAA
* * * **
47597544 TTAAAAACCCTAAGCCTTTAAAATTAAAAACCCTAAACCCTTAACTTAAAAACCTTAAC--CCTT
1 TTAAAAACCCTAAACCCTTAAAATTAAAAACCCTAAACCCTTAACTTAAAAACCTAAACTAATTT
47597607 AA
66 AA
* *
47597609 CTT-AAAACCCT-AACCCTTAAAATTAAAAACCCTAAACCCTTAAAATTAAAAACCATAAAC--C
1 -TTAAAAACCCTAAACCCTTAAAATTAAAAACCCTAAACCCTT-AACTTAAAAACC-TAAACTAA
*
47597670 CTTAA
63 TTTAA
* ** * * * * *
47597675 CTTAAAAACTCTAAACAATT-TAATTAAAAACCCCAAACCCTAAAACCCT-AAACCCTAAACCCT
1 -TTAAAAACCCTAAACCCTTAAAATTAAAAACCCTAAACCCT-TAA-CTTAAAAACCTAAA--CT
*
47597738 AACCCTTAA
61 AA--TTTAA
* * * * *
47597747 CTTAAAAACTCTAAAACCCTAAACTAATT-TAAA-CCTAAAACCCTAAACCTT-AAACCCT----
1 -TTAAAAACCCT-AAACCCTTAA--AATTAAAAACCCT-AAACCCTTAA-CTTAAAAACCTAAAC
*
47597805 TAA---AC
60 TAATTTAA
* * *
47597810 TTAAAAACCCT-AACCATT-AACTTAAAAACCTTAAACCCTTAACTTAAAAACTCTAAACTAATT
1 TTAAAAACCCTAAACCCTTAAAATTAAAAACCCTAAACCCTTAACTTAAAAAC-CTAAACTAATT
47597873 TAA
65 TAA
* *
47597876 TTAAAAACCCTAAACCCTT-AACTTAAAAACCCTAACCCCTTAACTTAAAAACCTTAAACTAATT
1 TTAAAAACCCTAAACCCTTAAAATTAAAAACCCTAAACCCTTAACTTAAAAACC-TAAACTAATT
47597940 TAA
65 TAA
*
47597943 TTAAAAACCCTAAACCCTTAAATTTAAAAACCCTAAACCCTTAACTTAAAAACTCTAAACTAATT
1 TTAAAAACCCTAAACCCTTAAAATTAAAAACCCTAAACCCTTAACTTAAAAAC-CTAAACTAATT
47598008 TAA
65 TAA
* ** * *
47598011 TTAAAAACCCTAAACCCTTAAACTTAAAAACCCT-AACTAATTTAA-TTGAAAACCCTAAAC--C
1 TTAAAAACCCTAAACCCTTAAAATTAAAAACCCTAAAC--CCTTAACTT-AAAAACCTAAACTAA
*
47598072 CTTAA
63 TTTAA
* * *
47598077 CTTAAAAACCCT-AACCC-TCAACTTAAAAA-CCTTAACCCTTAACTTAAAAACC
1 -TTAAAAACCCTAAACCCTTAAAATTAAAAACCCTAAACCCTTAACTTAAAAACC
47598129 CTTAACCCTT
Statistics
Matches: 493, Mismatches: 52, Indels: 84
0.78 0.08 0.13
Matches are distributed among these distances:
57 6 0.01
58 16 0.03
59 5 0.01
60 5 0.01
62 10 0.02
63 14 0.03
64 33 0.07
65 37 0.08
66 41 0.08
67 165 0.33
68 100 0.20
69 10 0.02
72 17 0.03
73 5 0.01
74 15 0.03
75 10 0.02
76 4 0.01
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.25
Consensus pattern (67 bp):
TTAAAAACCCTAAACCCTTAAAATTAAAAACCCTAAACCCTTAACTTAAAAACCTAAACTAATTT
AA
Found at i:47597736 original size:14 final size:15
Alignment explanation
Indices: 47597701--47597743 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
47597691 AATTTAATTA
*
47597701 AAAACCCCAAACCCT
1 AAAACCCTAAACCCT
47597716 AAAACCCTAAACCCT
1 AAAACCCTAAACCCT
47597731 -AAACCCT-AACCCT
1 AAAACCCTAAACCCT
47597744 TAACTTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 6 0.22
14 7 0.26
15 14 0.52
ACGTcount: A:0.44, C:0.44, G:0.00, T:0.12
Consensus pattern (15 bp):
AAAACCCTAAACCCT
Found at i:47597747 original size:7 final size:7
Alignment explanation
Indices: 47597702--47597743 Score: 59
Period size: 7 Copynumber: 6.0 Consensus size: 7
47597692 ATTTAATTAA
*
47597702 AAACCCC
1 AAACCCT
47597709 AAACCCT
1 AAACCCT
47597716 AAAACCCT
1 -AAACCCT
47597724 AAACCCT
1 AAACCCT
47597731 AAACCCT
1 AAACCCT
47597738 -AACCCT
1 AAACCCT
47597744 TAACTTAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
6 6 0.18
7 20 0.61
8 7 0.21
ACGTcount: A:0.43, C:0.45, G:0.00, T:0.12
Consensus pattern (7 bp):
AAACCCT
Found at i:47597795 original size:14 final size:14
Alignment explanation
Indices: 47597776--47597822 Score: 58
Period size: 14 Copynumber: 3.2 Consensus size: 14
47597766 TAAACTAATT
47597776 TAAACCTAAAACCC
1 TAAACCTAAAACCC
*
47597790 TAAACCTTAAACCC
1 TAAACCTAAAACCC
*
47597804 TTAAACTTAAAAACCC
1 -TAAACCT-AAAACCC
47597820 TAA
1 TAA
47597823 CCATTAACTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 13 0.46
15 9 0.32
16 6 0.21
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAACCTAAAACCC
Found at i:47598164 original size:64 final size:64
Alignment explanation
Indices: 47597791--47598188 Score: 286
Period size: 68 Copynumber: 6.0 Consensus size: 64
47597781 CTAAAACCCT
* * *
47597791 AAACCTTAAACCCTTAAACTTAAAAACCCTAAC-CATTAACTTAAAAACCTTAAACCCTTAACTT
1 AAACCCTAAACCCTT-AACTTAAAAACCCTAACAC-TCAACTTAAAAACCGT-AACCCTTAACTT
47597855 AA
63 AA
* ** * * *
47597857 AAACTCTAAACTAATTTAA-TTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCCCTTAACT
1 AAACCCTAAAC--CCTTAACTTAAAAACCCT-AACACTCAACTTAAAAACCGTAA-CCCTTAACT
47597921 TAA
62 TAA
* ** * * * *
47597924 AAACCTTAAACTAATTTAA-TTAAAAACCCTAAACCCTTAAATTTAAAAACCCTAAACCCTTAAC
1 AAACCCTAAAC--CCTTAACTTAAAAACCCT-AACAC-TCAACTTAAAAACCGT-AACCCTTAAC
47597988 TTAA
61 TTAA
* ** * * * **
47597992 AAACTCTAAACTAATTTAA-TTAAAAACCCTAAACCCTTAAACTTAAAAACCCTAACTAATTTAA
1 AAACCCTAAAC--CCTTAACTTAAAAACCCT-AACAC-TCAACTTAAAAACCGTAAC--CCTTAA
*
47598056 -TTGA
60 CTTAA
* *
47598060 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTCAACTTAAAAACCTTAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAACACTCAACTTAAAAACCGTAACCCTTAACTTAA
* * ** * *
47598124 AAACCCTTAACCCTTAACTTTAAAACTTTAA-ACTAGAACTTAAAAATCGTAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAACACT-CAACTTAAAAACCGTAACCCTTAACTTAA
47598188 A
1 A
47598189 TTTATTTGAT
Statistics
Matches: 289, Mismatches: 31, Indels: 26
0.84 0.09 0.08
Matches are distributed among these distances:
63 6 0.02
64 57 0.20
65 17 0.06
66 31 0.11
67 80 0.28
68 92 0.32
69 6 0.02
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.27
Consensus pattern (64 bp):
AAACCCTAAACCCTTAACTTAAAAACCCTAACACTCAACTTAAAAACCGTAACCCTTAACTTAA
Done.