Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 154 of 226
Found at i:48020418 original size:39 final size:38
Alignment explanation
Indices: 48020345--48020555 Score: 191
Period size: 39 Copynumber: 5.5 Consensus size: 38
48020335 TTCTTGTTTT
* *
48020345 AAAAGTTT-TCGTGTTTTCAAAAAAGTTTCGTGTTTCCAAA
1 AAAAATTTATCGTG-TTTC-AAAAA-TTTCGTGTTTTCAAA
* *
48020385 AAAAATTTCTCGTGTTTCAAAAATTTCCATGTTTTC-AA
1 AAAAATTTATCGTGTTTCAAAAATTT-CGTGTTTTCAAA
* * * *
48020423 AAAATTATTATGGTGTTTCAAAAATCTCGTGGTTT-AAA
1 AAAAAT-TTATCGTGTTTCAAAAATTTCGTGTTTTCAAA
*
48020461 AAAAATATATCGTGTTTCAAAAATTTCCGTGTTTTC-AA
1 AAAAATTTATCGTGTTTCAAAAATTT-CGTGTTTTCAAA
* * * *
48020499 AAAATTATTATGGTGTTTCAAAAATCTCGTGGTTT--AA
1 AAAAAT-TTATCGTGTTTCAAAAATTTCGTGTTTTCAAA
*
48020536 AAAAATATATCGTGTTTCAA
1 AAAAATTTATCGTGTTTCAA
48020556 TCGGATCACG
Statistics
Matches: 142, Mismatches: 22, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
36 12 0.08
37 24 0.17
38 44 0.31
39 46 0.32
40 11 0.08
41 5 0.04
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (38 bp):
AAAAATTTATCGTGTTTCAAAAATTTCGTGTTTTCAAA
Found at i:48020462 original size:37 final size:39
Alignment explanation
Indices: 48020394--48020555 Score: 199
Period size: 38 Copynumber: 4.3 Consensus size: 39
48020384 AAAAAATTTC
* * *
48020394 TCGTGTTTCAAAAATTTCCATGTTTTCAAAAAATTATTA
1 TCGTGTTTCAAAAATCTCCGTGGTTTCAAAAAATTATTA
* * *
48020433 TGGTGTTTCAAAAATCT-CGTGGTTTAAAAAAAATA-TA
1 TCGTGTTTCAAAAATCTCCGTGGTTTCAAAAAATTATTA
* *
48020470 TCGTGTTTCAAAAATTTCCGTGTTTTCAAAAAATTATTA
1 TCGTGTTTCAAAAATCTCCGTGGTTTCAAAAAATTATTA
* *
48020509 TGGTGTTTCAAAAATCT-CGTGGTTT-AAAAAAATA-TA
1 TCGTGTTTCAAAAATCTCCGTGGTTTCAAAAAATTATTA
48020545 TCGTGTTTCAA
1 TCGTGTTTCAA
48020556 TCGGATCACG
Statistics
Matches: 105, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
36 12 0.11
37 25 0.24
38 36 0.34
39 32 0.30
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (39 bp):
TCGTGTTTCAAAAATCTCCGTGGTTTCAAAAAATTATTA
Found at i:48020475 original size:76 final size:76
Alignment explanation
Indices: 48020382--48020555 Score: 314
Period size: 76 Copynumber: 2.3 Consensus size: 76
48020372 TCGTGTTTCC
* *
48020382 AAAAAAAATTTCTCGTGTTTCAAAAATTTCCATGTTTTCAAAAAATTATTATGGTGTTTCAAAAA
1 AAAAAAAATATATCGTGTTTCAAAAATTTCCATGTTTTCAAAAAATTATTATGGTGTTTCAAAAA
48020447 TCTCGTGGTTT
66 TCTCGTGGTTT
*
48020458 AAAAAAAATATATCGTGTTTCAAAAATTTCCGTGTTTTCAAAAAATTATTATGGTGTTTCAAAAA
1 AAAAAAAATATATCGTGTTTCAAAAATTTCCATGTTTTCAAAAAATTATTATGGTGTTTCAAAAA
48020523 TCTCGTGGTTT
66 TCTCGTGGTTT
48020534 -AAAAAAATATATCGTGTTTCAA
1 AAAAAAAATATATCGTGTTTCAA
48020556 TCGGATCACG
Statistics
Matches: 95, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
75 22 0.23
76 73 0.77
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (76 bp):
AAAAAAAATATATCGTGTTTCAAAAATTTCCATGTTTTCAAAAAATTATTATGGTGTTTCAAAAA
TCTCGTGGTTT
Found at i:48021624 original size:21 final size:22
Alignment explanation
Indices: 48021598--48021639 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
48021588 TTTTTAAAAA
*
48021598 TTAAAAT-ATTTTTATAATTTT
1 TTAAAATAATTTTTAAAATTTT
48021619 TTAAAATAATTTTTAAAATTT
1 TTAAAATAATTTTTAAAATTT
48021640 ATTTTTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTAAAATAATTTTTAAAATTTT
Found at i:48021633 original size:12 final size:11
Alignment explanation
Indices: 48021598--48021647 Score: 57
Period size: 10 Copynumber: 4.4 Consensus size: 11
48021588 TTTTTAAAAA
48021598 TTAAAATATTT
1 TTAAAATATTT
*
48021609 TTATAAT-TTT
1 TTAAAATATTT
48021619 TTAAAATAATTT
1 TTAAAAT-ATTT
48021631 TTAAAATTTATTT
1 TTAAAA--TATTT
48021644 TTAA
1 TTAA
48021648 TTTTAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
10 9 0.27
11 6 0.18
12 9 0.27
13 8 0.24
14 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (11 bp):
TTAAAATATTT
Found at i:48021667 original size:18 final size:19
Alignment explanation
Indices: 48021629--48021667 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
48021619 TTAAAATAAT
**
48021629 TTTTAAAATTTATTTTTAA
1 TTTTAAAATTTATAATTAA
48021648 TTTTAAAATTT-TAATTAA
1 TTTTAAAATTTATAATTAA
48021666 TT
1 TT
48021668 ATCGATATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTAAAATTTATAATTAA
Found at i:48026785 original size:34 final size:34
Alignment explanation
Indices: 48026745--48026827 Score: 103
Period size: 34 Copynumber: 2.4 Consensus size: 34
48026735 ATCAGCTCTT
* * **
48026745 CATTGATGTGCCCGAATAACCTTGTTGATATGTC
1 CATTGATGTGCACGAACAACCTTGAAGATATGTC
*
48026779 CATTGATGTGTACGAACAACCTTGAAGATATGTC
1 CATTGATGTGCACGAACAACCTTGAAGATATGTC
**
48026813 TTTTGATGTGCACGA
1 CATTGATGTGCACGA
48026828 GTAGCCTTTG
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.34
Consensus pattern (34 bp):
CATTGATGTGCACGAACAACCTTGAAGATATGTC
Found at i:48036334 original size:18 final size:16
Alignment explanation
Indices: 48036311--48036352 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
48036301 GTTATTAAAT
48036311 TTTAATTATTAAAAAAA
1 TTTAATTATT-AAAAAA
*
48036328 GTTTAA-TAATAAAAAA
1 -TTTAATTATTAAAAAA
48036344 TTTAATTAT
1 TTTAATTAT
48036353 ATTTTAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
15 5 0.24
16 8 0.38
17 3 0.14
18 5 0.24
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (16 bp):
TTTAATTATTAAAAAA
Found at i:48036494 original size:28 final size:27
Alignment explanation
Indices: 48036425--48036506 Score: 105
Period size: 28 Copynumber: 3.0 Consensus size: 27
48036415 TTTTTAATAT
* * *
48036425 AATTATTTTTATACTATATTATAAT-AA
1 AATTA-TTTTATATTAAATTATATTAAA
48036452 AA-TATTTTATATTAAATTATATTAAA
1 AATTATTTTATATTAAATTATATTAAA
48036478 AATTAGTTTTATATTAAATTATATTAAA
1 AATTA-TTTTATATTAAATTATATTAAA
48036506 A
1 A
48036507 TATTTCAAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
25 16 0.33
26 6 0.12
27 4 0.08
28 23 0.47
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (27 bp):
AATTATTTTATATTAAATTATATTAAA
Found at i:48042169 original size:26 final size:28
Alignment explanation
Indices: 48042138--48042192 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
48042128 GCACAAAGAG
*
48042138 AAAATAA-T-GATAAGCATCGAAGTGCA
1 AAAATAATTAGATAAGCACCGAAGTGCA
48042164 AAAATAATTACGATAAGCACCGAAGTGCA
1 AAAATAATTA-GATAAGCACCGAAGTGCA
48042193 TATCTTACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 7 0.28
27 1 0.04
29 17 0.68
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (28 bp):
AAAATAATTAGATAAGCACCGAAGTGCA
Found at i:48042854 original size:16 final size:16
Alignment explanation
Indices: 48042833--48042863 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
48042823 CATTTATAAG
48042833 TTAAAACTAAAAATTT
1 TTAAAACTAAAAATTT
48042849 TTAAAACTAAAAATT
1 TTAAAACTAAAAATT
48042864 AAATAACTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (16 bp):
TTAAAACTAAAAATTT
Found at i:48048501 original size:3 final size:3
Alignment explanation
Indices: 48048495--48048542 Score: 53
Period size: 3 Copynumber: 15.7 Consensus size: 3
48048485 ACTATTGTTG
* *
48048495 TAT TAT TAAT TAT TAT TAT AAT TAT AAT TA- TAT TAT ATAT TAT TAT
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
48048541 TA
1 TA
48048543 CACCTATAGG
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
2 2 0.05
3 30 0.79
4 6 0.16
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:48061421 original size:50 final size:50
Alignment explanation
Indices: 48060886--48061421 Score: 311
Period size: 50 Copynumber: 10.7 Consensus size: 50
48060876 TATCTCTTTG
* ** * * * *
48060886 GCAATTAAAAAGATTGAAGCCATAACGGCGGATCTTACTTCCCTGGCGGT
1 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCCCGACAGC
* ** ** * * ** * *
48060936 GCAGTGGAGCAGATCGAAGTCACAATAGCGGATCTGGTTTTCCCGACAGC
1 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCCCGACAGC
* ** * * * *
48060986 GCAATTAAAAAGATTGAAGCCACAACGGCAGATCTTACTTCCCTGGCGGT
1 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCCCGACAGC
* ** ** * * * *
48061036 GCAGTGGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTTCCCGACAGC
1 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCCCGACAGC
* ** * * * *
48061086 GCAATTAAAAAGATTGAAGCCATAACGGCGGATCTTACTTCCCTGGCGGT
1 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCCCGACAGC
* ** ** * * *
48061136 GCAGTGGAGCAGATTGAAGTCACAACGACGGATCTGGTTTCCCCGACAGC
1 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCCCGACAGC
* * * ** * * *
48061186 ACAATTAAAAAGATTGAAGCCACAACGGCAGATATTACTT-CCCTAGCGGT
1 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCCCGA-CAGC
* ** ** * * * *
48061236 GCAGTGGAGCAGATTGAAGTCACAACGACGGATCTAGTTTCCCCGACAGT
1 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCCCGACAGC
* ** * * *
48061286 GCAATTAAAAAGATTGAAGCCACAACGGCGTATCTTACTT-CCCTAGCGGT
1 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCCCGA-CAGC
* ** ** * * *
48061336 GCAGTGGAGCAGATTGAAGTCACAACGACGGATCTTGTTTCCCCGATAGC
1 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCCCGACAGC
*
48061386 GCAATTAAAAAGATTGAAGCCACAACAGCGGATCTT
1 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTT
48061422 ACCTCCTTAG
Statistics
Matches: 335, Mismatches: 147, Indels: 8
0.68 0.30 0.02
Matches are distributed among these distances:
49 8 0.02
50 319 0.95
51 8 0.02
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.21
Consensus pattern (50 bp):
GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCCCGACAGC
Found at i:48061477 original size:100 final size:100
Alignment explanation
Indices: 48060886--48061454 Score: 888
Period size: 100 Copynumber: 5.7 Consensus size: 100
48060876 TATCTCTTTG
* * *
48060886 GCAATTAAAAAGATTGAAGCCATAACGGCGGATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATC
1 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATT
* *
48060951 GAAGTCACAA-TAGCGGATCTGGTTTTCCCGACAGC
66 GAAGTCACAACGA-CGGATCTGGTTTCCCCGACAGC
* *
48060986 GCAATTAAAAAGATTGAAGCCACAACGGCAGATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATT
1 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATT
* * *
48061051 GAAGTCACAACGGCAGATCTGGTTTTCCCGACAGC
66 GAAGTCACAACGACGGATCTGGTTTCCCCGACAGC
* *
48061086 GCAATTAAAAAGATTGAAGCCATAACGGCGGATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATT
1 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATT
48061151 GAAGTCACAACGACGGATCTGGTTTCCCCGACAGC
66 GAAGTCACAACGACGGATCTGGTTTCCCCGACAGC
* * *
48061186 ACAATTAAAAAGATTGAAGCCACAACGGCAGATATTACTTCCCTAGCGGTGCAGTGGAGCAGATT
1 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATT
* *
48061251 GAAGTCACAACGACGGATCTAGTTTCCCCGACAGT
66 GAAGTCACAACGACGGATCTGGTTTCCCCGACAGC
*
48061286 GCAATTAAAAAGATTGAAGCCACAACGGCGTATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATT
1 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATT
* *
48061351 GAAGTCACAACGACGGATCTTGTTTCCCCGATAGC
66 GAAGTCACAACGACGGATCTGGTTTCCCCGACAGC
* * * * * *
48061386 GCAATTAAAAAGATTGAAGCCACAACAGCGGATCTTACCTCCTTAGCGGTGCAGTTGAACAAATT
1 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATT
48061451 GAAG
66 GAAG
48061455 CTACGATGGC
Statistics
Matches: 436, Mismatches: 32, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
100 436 1.00
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (100 bp):
GCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATT
GAAGTCACAACGACGGATCTGGTTTCCCCGACAGC
Found at i:48062898 original size:3 final size:3
Alignment explanation
Indices: 48062892--48062942 Score: 50
Period size: 3 Copynumber: 16.7 Consensus size: 3
48062882 ACTATTGTTG
* * *
48062892 TAT TAT TAAT TAT TAT AAT TAT AAT TAT AAT TA- TAT TAT ATAT TAT
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
48062938 TAT TA
1 TAT TA
48062943 CACCTATAGG
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
2 2 0.05
3 31 0.79
4 6 0.15
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:48066422 original size:15 final size:14
Alignment explanation
Indices: 48066402--48066463 Score: 61
Period size: 14 Copynumber: 4.2 Consensus size: 14
48066392 CTTTTATACT
*
48066402 TTAATTTAAGCTTAA
1 TTAA-TTAAACTTAA
*
48066417 TTAATTAAAATTAA
1 TTAATTAAACTTAA
48066431 TTAATTAAACTTAAA
1 TTAATTAAACTT-AA
* *
48066446 TTAACTAAGCCTTAA
1 TTAATTAA-ACTTAA
48066461 TTA
1 TTA
48066464 GTAATTAATA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
14 19 0.47
15 18 0.45
16 3 0.08
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (14 bp):
TTAATTAAACTTAA
Found at i:48071446 original size:3 final size:3
Alignment explanation
Indices: 48071438--48071462 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
48071428 AAATTGATGG
48071438 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
48071463 TTTGGCAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:48080524 original size:22 final size:22
Alignment explanation
Indices: 48080496--48080540 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
48080486 CAAAAGCATA
48080496 CACATGAAAGTAACGTGTGTTT
1 CACATGAAAGTAACGTGTGTTT
48080518 CACATGAAAGTAACGTGTGTTT
1 CACATGAAAGTAACGTGTGTTT
48080540 C
1 C
48080541 TATCTCCCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (22 bp):
CACATGAAAGTAACGTGTGTTT
Found at i:48090851 original size:3 final size:3
Alignment explanation
Indices: 48090843--48090944 Score: 159
Period size: 3 Copynumber: 33.7 Consensus size: 3
48090833 TGAGGATCTC
* * *
48090843 GAA GAA GAA AAA GAA GAA GAA GAA GAA GAA GAA AAA GAAA GAA AAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G-AA GAA GAA
*
48090889 GAA GAA GAA GAA GAA GAA GAA AAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
48090937 GAA GAA GA
1 GAA GAA GA
48090945 TCCCACAAAG
Statistics
Matches: 90, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
3 87 0.97
4 3 0.03
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:48096785 original size:72 final size:72
Alignment explanation
Indices: 48096668--48096809 Score: 248
Period size: 72 Copynumber: 2.0 Consensus size: 72
48096658 TCTCGGATTT
* * *
48096668 AAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTTTTCTTAATTCCCGAGATCGTTTAAAA
1 AAAAAAAGGATAATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAA
48096733 CTTGAGA
66 CTTGAGA
*
48096740 AAAAAAAGGATAATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCTCGAGATCGTTTAAAA
1 AAAAAAAGGATAATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAA
48096805 CTTGA
66 CTTGA
48096810 ATTGGACAAG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (72 bp):
AAAAAAAGGATAATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAA
CTTGAGA
Found at i:48097149 original size:4 final size:4
Alignment explanation
Indices: 48097140--48097168 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
48097130 TAATGAAAAT
48097140 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
48097169 ATGAATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:48097302 original size:82 final size:82
Alignment explanation
Indices: 48097201--48097384 Score: 214
Period size: 82 Copynumber: 2.2 Consensus size: 82
48097191 TAAAAGGTAT
* * *
48097201 ATGTATGTACATATATATATAAATTATAGGATATAATAAAAATATATAAGTA-TGTA-A-TTATA
1 ATGTATATACATATATATATAAATTATA--AAAT-ATAAAAATATATAAGTAGTGTATACATATA
48097263 TATTCATAAAAATTAAAAAA
63 TATTCATAAAAATTAAAAAA
* * *
48097283 ATGTATATAGATATGTATATAAGTTATAAAATATAAAAATATATAAGTATGTGTATACATATATA
1 ATGTATATACATATATATATAAATTATAAAATATAAAAATATATAAGTA-GTGTATACATATATA
*
48097348 TTTATAAAAATTAAAAAA
65 TTCATAAAAATTAAAAAA
* * *
48097366 A-ATATGTACGTATATATAT
1 ATGTATATACATATATATAT
48097385 TATAAAAACG
Statistics
Matches: 86, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
79 17 0.20
80 3 0.03
81 4 0.05
82 38 0.44
83 24 0.28
ACGTcount: A:0.52, C:0.02, G:0.08, T:0.38
Consensus pattern (82 bp):
ATGTATATACATATATATATAAATTATAAAATATAAAAATATATAAGTAGTGTATACATATATAT
TCATAAAAATTAAAAAA
Found at i:48097677 original size:3 final size:3
Alignment explanation
Indices: 48097595--48097658 Score: 58
Period size: 3 Copynumber: 21.7 Consensus size: 3
48097585 AAATGAAAAT
* * * * * *
48097595 ATA ATG ATA ATA ATA TTA ATA TTA TTA ATA ATA ATA ATA ATA CTA CTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
48097643 ATA ATA AAA AT- ATA AT
1 ATA ATA ATA ATA ATA AT
48097659 TTATTATTTT
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
2 2 0.04
3 48 0.96
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:48099120 original size:44 final size:44
Alignment explanation
Indices: 48099023--48099137 Score: 115
Period size: 44 Copynumber: 2.6 Consensus size: 44
48099013 AGTCTACTTC
* * * ** *
48099023 ACTGCAACGTCAGGGAGATGAGACTTGCATA-TTCAACCTGCCCT
1 ACTGCAACTTCAGAGAGATAAGGTTTGCA-ACTTCAACCTGCCAT
* * * *
48099067 ATTGCAACTTCAGGGGGATAAGGTTTGCAACTTCAACCTGCTAT
1 ACTGCAACTTCAGAGAGATAAGGTTTGCAACTTCAACCTGCCAT
*
48099111 ACTGTAACTTCAGAGAGATAAGGTTTG
1 ACTGCAACTTCAGAGAGATAAGGTTTG
48099138 ATATGATCTG
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
43 1 0.02
44 57 0.98
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (44 bp):
ACTGCAACTTCAGAGAGATAAGGTTTGCAACTTCAACCTGCCAT
Found at i:48099161 original size:41 final size:41
Alignment explanation
Indices: 48099104--48099183 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 41
48099094 CAACTTCAAC
* * *
48099104 CTGCTATACTGTAACTTCAGAGAGATAAGGTTTGATATGAT
1 CTGCTATACTGAAACTTCAAAGAGATAAGATTTGATATGAT
* *
48099145 CTGCTCTACTGAAACTTCAAAGAGATAAGATTTGTTATG
1 CTGCTATACTGAAACTTCAAAGAGATAAGATTTGATATG
48099184 GTAGATTTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.34
Consensus pattern (41 bp):
CTGCTATACTGAAACTTCAAAGAGATAAGATTTGATATGAT
Found at i:48099343 original size:45 final size:45
Alignment explanation
Indices: 48099270--48099669 Score: 350
Period size: 44 Copynumber: 9.0 Consensus size: 45
48099260 GTGTCTTTGA
* *
48099270 TCTGCTTCGTTGTCAGTACAGGAAGGCAAGATCTACTATCTTCAG
1 TCTGCTCCGCTGTCAGTACAGGAAGGCAAGATCTACTATCTTCAG
* * ** *
48099315 TCTGCTCCGCTG-CA-AACCCAGGGAGGCAAGA-CTGGTGTCTTC-G
1 TCTGCTCCGCTGTCAGTA--CAGGAAGGCAAGATCTACTATCTTCAG
* * *
48099358 ATCTGCTTCGCTGTCAGTACAGGAAGGCGAGATCTATTATCTTCAG
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGATCTACTATCTTCAG
* * * *
48099404 TCTGCTCCGCTGTCAGTACAGGAAGGCAAG-GCTAGTGTCTTCAA
1 TCTGCTCCGCTGTCAGTACAGGAAGGCAAGATCTACTATCTTCAG
* *
48099448 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
1 TCTGCTCCGCTGTCAGTACAGGAAGGCAAGATCTACTATCTTCAG
* * * *
48099493 TCTGCTCTGCTGTCAGTACAGGAAGGCAAG-GCTAGTGTCTTC-G
1 TCTGCTCCGCTGTCAGTACAGGAAGGCAAGATCTACTATCTTCAG
* * * * * * *
48099536 ATTTGCTTCGTTGTCAGTATAGGAAGGAAAGATCTGCTATCTTTAG
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGATCTACTATCTTCAG
* ** * * ** *
48099582 TCTGTTCCGCTGTCAACACAGGAAGGTAAG-GCTGGTGTCTTC-G
1 TCTGCTCCGCTGTCAGTACAGGAAGGCAAGATCTACTATCTTCAG
* * *
48099625 ATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGATCTACTATCTTCA
48099670 CTAATCTGTT
Statistics
Matches: 277, Mismatches: 64, Indels: 27
0.75 0.17 0.07
Matches are distributed among these distances:
43 4 0.01
44 135 0.49
45 135 0.49
46 3 0.01
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (45 bp):
TCTGCTCCGCTGTCAGTACAGGAAGGCAAGATCTACTATCTTCAG
Found at i:48099409 original size:89 final size:89
Alignment explanation
Indices: 48099258--48099669 Score: 578
Period size: 89 Copynumber: 4.6 Consensus size: 89
48099248 CTGCAAACTA
* * *
48099258 TGGTGTCTTTGATCTGCTTCGTTGTCAGTACAGGAAGGCAAGATCTACTATCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* *
48099323 GCTG-CA-AACCCAGGGAGGCAAGAC
66 GCTGTCAGAA--CAGGAAGGCAAGGC
* **
48099347 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCGAGATCTATTATCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
*
48099412 GCTGTCAGTACAGGAAGGCAAGGC
66 GCTGTCAGAACAGGAAGGCAAGGC
* * *
48099436 TAGTGTCTTCAATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCT
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
*
48099501 GCTGTCAGTACAGGAAGGCAAGGC
66 GCTGTCAGAACAGGAAGGCAAGGC
* * * * * * *
48099525 TAGTGTCTTCGATTTGCTTCGTTGTCAGTATAGGAAGGAAAGATCTGCTATCTTTAGTCTGTTCC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
*
48099590 GCTGTCA-ACACAGGAAGGTAAGGC
66 GCTGTCAGA-ACAGGAAGGCAAGGC
*
48099614 TGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCA
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCA
48099670 CTAATCTGTT
Statistics
Matches: 290, Mismatches: 30, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
89 287 0.99
90 2 0.01
91 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (89 bp):
TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
GCTGTCAGAACAGGAAGGCAAGGC
Found at i:48100887 original size:6 final size:6
Alignment explanation
Indices: 48100876--48100901 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
48100866 AGCCTCTCCA
48100876 TTTTCT TTTTCT TTTTCT TTTTCT TT
1 TTTTCT TTTTCT TTTTCT TTTTCT TT
48100902 ACTATTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTCT
Found at i:48102147 original size:32 final size:32
Alignment explanation
Indices: 48102109--48102173 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
48102099 CAAGTCCAAA
*
48102109 AATAGGCTACAATCTATGTTATATTCAAAGTC
1 AATAGGCTACAATCTATGTCATATTCAAAGTC
48102141 AATAGGCTACAATCTATGTCATATTCAAAGTC
1 AATAGGCTACAATCTATGTCATATTCAAAGTC
48102173 A
1 A
48102174 TGAGATCCCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (32 bp):
AATAGGCTACAATCTATGTCATATTCAAAGTC
Found at i:48107552 original size:48 final size:46
Alignment explanation
Indices: 48107412--48107555 Score: 108
Period size: 48 Copynumber: 3.2 Consensus size: 46
48107402 AGGATATAAT
*
48107412 AAAAATATATAAGTA-TGTAT--T-TATATATTCATAAAAATTAAA
1 AAAAATATATAAGTATTGTATAATATATATATTTATAAAAATTAAA
** * * *
48107454 AAATGTATAT-AG-ATATATATAGATATGTATATAAGTTAT-AAAA-T-AT
1 AAAAATATATAAGTAT-TGTATA-ATA--TATAT-ATTTATAAAAATTAAA
48107500 AAAAATATATAAGTATGTGTATACATATATATATTTATAAAAATTAAA
1 AAAAATATATAAGTAT-TGTATA-ATATATATATTTATAAAAATTAAA
48107548 AAAAATAT
1 AAAAATAT
48107556 GTACGTATAT
Statistics
Matches: 75, Mismatches: 13, Indels: 22
0.68 0.12 0.20
Matches are distributed among these distances:
40 1 0.01
41 2 0.03
42 12 0.16
45 6 0.08
46 18 0.24
47 4 0.05
48 28 0.37
49 4 0.05
ACGTcount: A:0.54, C:0.01, G:0.07, T:0.38
Consensus pattern (46 bp):
AAAAATATATAAGTATTGTATAATATATATATTTATAAAAATTAAA
Found at i:48107805 original size:3 final size:3
Alignment explanation
Indices: 48107799--48107836 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
48107789 ATAATATTAA
48107799 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
48107837 ATAATAATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
TAC
Found at i:48107841 original size:3 final size:3
Alignment explanation
Indices: 48107835--48107873 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
48107825 CTACTACTAC
* *
48107835 TAA TAA TAA TAA TAA TAA TAA TAA TAT TTA TAA T-A TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
48107874 TTATTATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:48114308 original size:20 final size:20
Alignment explanation
Indices: 48114283--48114321 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
48114273 ATAATTAAGA
* *
48114283 AAATATTTTGAAACTCAAAT
1 AAATATCTTAAAACTCAAAT
48114303 AAATATCTTAAAACTCAAA
1 AAATATCTTAAAACTCAAA
48114322 AATTTCATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.13, G:0.03, T:0.31
Consensus pattern (20 bp):
AAATATCTTAAAACTCAAAT
Found at i:48125907 original size:7 final size:8
Alignment explanation
Indices: 48125888--48125915 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
48125878 AAAAAAATAT
48125888 TTTTTTAA
1 TTTTTTAA
48125896 TTTTTTAA
1 TTTTTTAA
48125904 TTTTTTAA
1 TTTTTTAA
48125912 TTTT
1 TTTT
48125916 GTTTTCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTTAA
Found at i:48127550 original size:23 final size:23
Alignment explanation
Indices: 48127521--48127582 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
48127511 GGCCTGCCCG
* *
48127521 TTTTTAATTAAAATTAAAATTAT
1 TTTTTAATTAAAATTAAAACTAA
*
48127544 TTTTTAAATAAAATTAAAACTAA
1 TTTTTAATTAAAATTAAAACTAA
*
48127567 TTGTT-ATTAAAATTAA
1 TTTTTAATTAAAATTAA
48127583 TTGTTAGTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 10 0.29
23 24 0.71
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
TTTTTAATTAAAATTAAAACTAA
Found at i:48127595 original size:16 final size:16
Alignment explanation
Indices: 48127558--48127597 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
48127548 TAAATAAAAT
* *
48127558 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
48127574 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
48127590 TAAAATTA
1 TAAAATTA
48127598 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:48127676 original size:59 final size:59
Alignment explanation
Indices: 48127608--48127777 Score: 322
Period size: 59 Copynumber: 2.9 Consensus size: 59
48127598 TCAAATTATT
* *
48127608 AATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTAAATTTATCA
48127667 AATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTAAATTTATCA
48127726 AATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTAAA
1 AATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTAAA
48127778 ACAAACTTGA
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 109 1.00
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (59 bp):
AATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTAAATTTATCA
Found at i:48127889 original size:22 final size:23
Alignment explanation
Indices: 48127844--48127887 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
48127834 AAATAAACTT
48127844 AAAATAAAAACTATTATATTTTA
1 AAAATAAAAACTATTATATTTTA
48127867 AAAATAAAAA-TATATATATTT
1 AAAATAAAAACTAT-TATATTT
48127888 AATATTTTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (23 bp):
AAAATAAAAACTATTATATTTTA
Found at i:48128000 original size:31 final size:33
Alignment explanation
Indices: 48127949--48128018 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 33
48127939 ATTTTTTAAA
*
48127949 CGGGCCTAAAATTTTGCCC-AA-GCCCATATTT
1 CGGGCCTAAAATTTTACCCAAACGCCCATATTT
* * *
48127980 CGGGCCTATATTTTTACCCAAACCTCCCATATTT
1 CGGGCCTAAAATTTTACCCAAA-CGCCCATATTT
48128014 CGGGC
1 CGGGC
48128019 GGGCCGTCGG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
31 16 0.50
32 2 0.06
34 14 0.44
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (33 bp):
CGGGCCTAAAATTTTACCCAAACGCCCATATTT
Found at i:48129239 original size:29 final size:29
Alignment explanation
Indices: 48129186--48129241 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
48129176 GGCCTAGACC
*
48129186 GTGTGTCACACACGGCCCAATACACGGTT
1 GTGTGTCACACACGGCCCAACACACGGTT
* * *
48129215 GTGTGTCACACATGGCCTACCACACGG
1 GTGTGTCACACACGGCCCAACACACGG
48129242 CTGGGTGGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.20
Consensus pattern (29 bp):
GTGTGTCACACACGGCCCAACACACGGTT
Found at i:48130187 original size:38 final size:38
Alignment explanation
Indices: 48130136--48130265 Score: 174
Period size: 38 Copynumber: 3.4 Consensus size: 38
48130126 ACCACTTTGA
*
48130136 CCACCTTGCACACCACATATGAGCTATAACGAGCCCAT
1 CCACCCTGCACACCACATATGAGCTATAACGAGCCCAT
48130174 CCACCCTGCACACCACATATGAGCTATAACGAGCCCAT
1 CCACCCTGCACACCACATATGAGCTATAACGAGCCCAT
* * * * *
48130212 CCGCCCTGCACACCACATA-GAACTTTGAAAG-GCTCAT
1 CCACCCTGCACACCACATATGAGCTAT-AACGAGCCCAT
*
48130249 CCACCCTACACACCACA
1 CCACCCTGCACACCACA
48130266 ATTTGGAACT
Statistics
Matches: 83, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
37 25 0.30
38 58 0.70
ACGTcount: A:0.32, C:0.40, G:0.12, T:0.16
Consensus pattern (38 bp):
CCACCCTGCACACCACATATGAGCTATAACGAGCCCAT
Found at i:48130785 original size:20 final size:21
Alignment explanation
Indices: 48130743--48130786 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
48130733 GGAGGTCTAT
** *
48130743 ACGCCCATGTAGAAATGGTAC
1 ACGCCCATGTAGAAAAAGCAC
48130764 ACGCCCATGT-GAAAAAGCAC
1 ACGCCCATGTAGAAAAAGCAC
48130784 ACG
1 ACG
48130787 TCAGTGTGAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.36, C:0.27, G:0.23, T:0.14
Consensus pattern (21 bp):
ACGCCCATGTAGAAAAAGCAC
Found at i:48136012 original size:113 final size:113
Alignment explanation
Indices: 48135737--48136030 Score: 482
Period size: 113 Copynumber: 2.6 Consensus size: 113
48135727 CGCAAAATAC
*
48135737 CTTAACCAAAACGCAGCGTTTGGTTTTGAGGTATATTAGAATTAGTGGCATTTACGAGAAAACGC
1 CTTAACCAAAACGCAGCGTTTGGTTTTGAGGTATATTAGAATTAGTGGCGTTTACGAGAAAACGC
*
48135802 CGCTAAAGAACAGTATTAGCGGCGTATTACAAAAAGCGCCGCAAAGAT
66 CGCTAAAGAACAGTATTAGCGGCATATTACAAAAAGCGCCGCAAAGAT
*
48135850 CTTAACCAAAACACAGCGTTTGGTTTTGAGGTATATTAGAATTAGTGGCGTTTACGAGAAAACGC
1 CTTAACCAAAACGCAGCGTTTGGTTTTGAGGTATATTAGAATTAGTGGCGTTTACGAGAAAACGC
48135915 CGCTAAAGAACAGTATTAGCGGCATATTACAAAAAGCGCCGCAAAGAT
66 CGCTAAAGAACAGTATTAGCGGCATATTACAAAAAGCGCCGCAAAGAT
* * * * ** *
48135963 CTTAACCAAAACGCA-CTGTTTGGTCTTGAGGTAGATTAGAGTTAGTGGCGCTTATTAAAAAACG
1 CTTAACCAAAACGCAGC-GTTTGGTTTTGAGGTATATTAGAATTAGTGGCGTTTACGAGAAAACG
48136027 CCGC
65 CCGC
48136031 AAAATATTGG
Statistics
Matches: 169, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
112 1 0.01
113 168 0.99
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (113 bp):
CTTAACCAAAACGCAGCGTTTGGTTTTGAGGTATATTAGAATTAGTGGCGTTTACGAGAAAACGC
CGCTAAAGAACAGTATTAGCGGCATATTACAAAAAGCGCCGCAAAGAT
Found at i:48138995 original size:23 final size:23
Alignment explanation
Indices: 48138969--48139019 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
48138959 TGTTATTGAT
48138969 CAGTGGTAGCTTCGGCTACATAA
1 CAGTGGTAGCTTCGGCTACATAA
*
48138992 CAGTGGTAGCTTCGGCTACATAT
1 CAGTGGTAGCTTCGGCTACATAA
48139015 CAGTG
1 CAGTG
48139020 TTGCACTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (23 bp):
CAGTGGTAGCTTCGGCTACATAA
Found at i:48146317 original size:23 final size:23
Alignment explanation
Indices: 48146290--48146387 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
48146280 AATGTTATTG
*
48146290 ATCAGTGGTAGCTTCGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACAT
*
48146313 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
48146336 A-AAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
48146358 AACAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
48146381 ATCAGTG
1 ATCAGTG
48146388 TTGCACTTAT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
22 21 0.31
23 47 0.69
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:48146364 original size:45 final size:45
Alignment explanation
Indices: 48146293--48146381 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
48146283 GTTATTGATC
* **
48146293 AGTGGTAGCTTCGGCTACGTTTCAGTGGTAGCTTCGGCTACATAA
1 AGTGGTAGCTTCGGCTACATAACAGTGGTAGCTTCGGCTACATAA
48146338 AGTGGTAGCTTCGGCTACATAACAGTGGTAGCTTCGGCTACATA
1 AGTGGTAGCTTCGGCTACATAACAGTGGTAGCTTCGGCTACATA
48146382 TCAGTGTTGC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
AGTGGTAGCTTCGGCTACATAACAGTGGTAGCTTCGGCTACATAA
Found at i:48148505 original size:15 final size:16
Alignment explanation
Indices: 48148475--48148509 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
48148465 ATTTATCAAT
*
48148475 TTTAATATTGATAGTA
1 TTTAATATTGAGAGTA
48148491 TTTAA-ATTGAGAGTA
1 TTTAATATTGAGAGTA
48148506 TTTA
1 TTTA
48148510 TAAATTTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (16 bp):
TTTAATATTGAGAGTA
Found at i:48151691 original size:17 final size:17
Alignment explanation
Indices: 48151669--48151701 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
48151659 TTATTTTCTA
48151669 TATAAGTCTTCTAAATT
1 TATAAGTCTTCTAAATT
*
48151686 TATAAGTTTTCTAAAT
1 TATAAGTCTTCTAAAT
48151702 AATTTTTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.48
Consensus pattern (17 bp):
TATAAGTCTTCTAAATT
Found at i:48151697 original size:30 final size:30
Alignment explanation
Indices: 48151662--48151718 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
48151652 AAAAATTTTA
* *
48151662 TTTTCTATATAAGTCTTCTAAATTTATAAG
1 TTTTCTAAATAAGTCTTATAAATTTATAAG
* *
48151692 TTTTCTAAATAATTTTTATAAATTTAT
1 TTTTCTAAATAAGTCTTATAAATTTAT
48151719 TAGTATAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54
Consensus pattern (30 bp):
TTTTCTAAATAAGTCTTATAAATTTATAAG
Found at i:48151749 original size:61 final size:61
Alignment explanation
Indices: 48151684--48151827 Score: 166
Period size: 61 Copynumber: 2.4 Consensus size: 61
48151674 GTCTTCTAAA
* *
48151684 TTTATAAGTTTTCTAAATAATTTTTATAAATTTATTAGT-ATAAAAATTTAGT-AGTATTAAT
1 TTTATAAGTTTTCTAAATAATTGTTATAAATTTATTAGTAAT-AAAATTTA-TAAGTATCAAT
* * * * *
48151745 TTTATAAGTTTTCTAAAAAAGTGTTCTAGATTTATTATTAATAAAATTTATAAGTATCAAT
1 TTTATAAGTTTTCTAAATAATTGTTATAAATTTATTAGTAATAAAATTTATAAGTATCAAT
* * *
48151806 TTTACACGTTTTGTAAATAATT
1 TTTATAAGTTTTCTAAATAATT
48151828 ATATTTTTTT
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
60 1 0.01
61 66 0.96
62 2 0.03
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.49
Consensus pattern (61 bp):
TTTATAAGTTTTCTAAATAATTGTTATAAATTTATTAGTAATAAAATTTATAAGTATCAAT
Found at i:48152034 original size:12 final size:12
Alignment explanation
Indices: 48152017--48152198 Score: 55
Period size: 12 Copynumber: 16.2 Consensus size: 12
48152007 ATAAGCTTGC
48152017 ATAACTTACATA
1 ATAACTTACATA
*
48152029 ATAACTT-C--C
1 ATAACTTACATA
*
48152038 ATAACTTATAT-
1 ATAACTTACATA
*
48152049 ATAA-TAACATA
1 ATAACTTACATA
*
48152060 ATAAATTAC---
1 ATAACTTACATA
48152069 ATAA--TACATA
1 ATAACTTACATA
*
48152079 ATAACATA-ATA
1 ATAACTTACATA
*
48152090 CATAACTTATAT-
1 -ATAACTTACATA
*
48152102 ATAAGCTT--GT-
1 ATAA-CTTACATA
48152112 ATAACTTACATA
1 ATAACTTACATA
*
48152124 ATAACTT-C--C
1 ATAACTTACATA
48152133 ATAACTTACATA
1 ATAACTTACATA
* *
48152145 GCTTACTTA-ATA
1 -ATAACTTACATA
48152157 CATAACTTACATA
1 -ATAACTTACATA
48152170 ACTTATAC--ACATA
1 A--TA-ACTTACATA
48152183 CATAACTTACATA
1 -ATAACTTACATA
48152196 ATA
1 ATA
48152199 TATAAACATA
Statistics
Matches: 128, Mismatches: 15, Indels: 54
0.65 0.08 0.27
Matches are distributed among these distances:
7 3 0.02
9 21 0.16
10 14 0.11
11 20 0.16
12 44 0.34
13 21 0.16
14 3 0.02
15 2 0.02
ACGTcount: A:0.47, C:0.17, G:0.02, T:0.34
Consensus pattern (12 bp):
ATAACTTACATA
Found at i:48152062 original size:8 final size:7
Alignment explanation
Indices: 48152049--48152094 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
48152039 TAACTTATAT
48152049 ATAATAAC
1 ATAAT-AC
48152057 ATAATA-
1 ATAATAC
*
48152063 A-ATTAC
1 ATAATAC
48152069 ATAATAC
1 ATAATAC
48152076 ATAATAAC
1 ATAAT-AC
48152084 ATAATAC
1 ATAATAC
48152091 ATAA
1 ATAA
48152095 CTTATATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
5 3 0.09
6 2 0.06
7 16 0.48
8 12 0.36
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (7 bp):
ATAATAC
Found at i:48152087 original size:15 final size:15
Alignment explanation
Indices: 48152049--48152094 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
48152039 TAACTTATAT
48152049 ATAATAACATAAT--
1 ATAATAACATAATAC
*
48152062 A-AATTACATAATAC
1 ATAATAACATAATAC
48152076 ATAATAACATAATAC
1 ATAATAACATAATAC
48152091 ATAA
1 ATAA
48152095 CTTATATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 10 0.36
13 1 0.04
14 1 0.04
15 16 0.57
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (15 bp):
ATAATAACATAATAC
Found at i:48152136 original size:9 final size:9
Alignment explanation
Indices: 48152124--48152878 Score: 516
Period size: 9 Copynumber: 84.4 Consensus size: 9
48152114 AACTTACATA
*
48152124 ATAACTTCC
1 ATAACTTAC
48152133 ATAACTTAC
1 ATAACTTAC
*
48152142 ATAGCTTAC
1 ATAACTTAC
*
48152151 TTAA--TAC
1 ATAACTTAC
48152158 ATAACTTAC
1 ATAACTTAC
48152167 ATAACTT--
1 ATAACTTAC
*
48152174 ATACACATAC
1 ATA-ACTTAC
48152184 ATAACTTAC
1 ATAACTTAC
*
48152193 ATAA--TAT
1 ATAACTTAC
*
48152200 ATAAACATATAT
1 AT-AAC-T-TAC
* *
48152212 AGAAACTCAC
1 A-TAACTTAC
* *
48152222 ATAAATTAA
1 ATAACTTAC
48152231 ATAACTTAC
1 ATAACTTAC
48152240 ATAACTTAC
1 ATAACTTAC
* *
48152249 ATAAATTAA
1 ATAACTTAC
48152258 ATAACTTAC
1 ATAACTTAC
* *
48152267 ATAAATTAA
1 ATAACTTAC
*
48152276 ATAATTTAC
1 ATAACTTAC
48152285 ATAACTTAC
1 ATAACTTAC
* *
48152294 ATAAATTAA
1 ATAACTTAC
*
48152303 ATAACTTAA
1 ATAACTTAC
48152312 ATAACTTAC
1 ATAACTTAC
*
48152321 ATAAATTA-
1 ATAACTTAC
48152329 ATTAACTTAC
1 A-TAACTTAC
48152339 ATAACTTAC
1 ATAACTTAC
*
48152348 ATAAAC-TAA
1 AT-AACTTAC
48152357 ATAACTTAC
1 ATAACTTAC
48152366 ATAACTTAC
1 ATAACTTAC
* **
48152375 ATAAATTTT
1 ATAACTTAC
48152384 ATAACTTAC
1 ATAACTTAC
*
48152393 ATAACTTAA
1 ATAACTTAC
* *
48152402 ATAAATTAA
1 ATAACTTAC
48152411 ATAACTTAC
1 ATAACTTAC
*
48152420 ATAACTTCC
1 ATAACTTAC
* *
48152429 GTGGACTTAC
1 AT-AACTTAC
**
48152439 ATAACCGAC
1 ATAACTTAC
* *
48152448 ATAAATTAA
1 ATAACTTAC
48152457 ATAACTTAC
1 ATAACTTAC
*
48152466 ATAAAC-TAA
1 AT-AACTTAC
48152475 ATAACTTAC
1 ATAACTTAC
*
48152484 ATAACCTAC
1 ATAACTTAC
* *
48152493 ATAAATTAA
1 ATAACTTAC
48152502 ATAACTTAC
1 ATAACTTAC
*
48152511 ATAACTTCC
1 ATAACTTAC
* *
48152520 GTGGACTTAC
1 AT-AACTTAC
48152530 ATAACTTAC
1 ATAACTTAC
* *
48152539 ATAAATTAA
1 ATAACTTAC
*
48152548 ATAGCTTAC
1 ATAACTTAC
48152557 ATAACTTAC
1 ATAACTTAC
*
48152566 ATAAAC-TAA
1 AT-AACTTAC
48152575 ATAACTTAC
1 ATAACTTAC
48152584 ATAACTTAC
1 ATAACTTAC
* *
48152593 ATAAATTAA
1 ATAACTTAC
48152602 ATAACTTAC
1 ATAACTTAC
48152611 ATAACTTAC
1 ATAACTTAC
* **
48152620 ATAAATTTT
1 ATAACTTAC
48152629 ATAACTTAC
1 ATAACTTAC
* *
48152638 ATAAATTCC
1 ATAACTTAC
* *
48152647 GTGGACTTAC
1 AT-AACTTAC
*
48152657 ATAACCTAC
1 ATAACTTAC
* *
48152666 ATAAATTAA
1 ATAACTTAC
48152675 ATAACTTAC
1 ATAACTTAC
* *
48152684 ATAAACTGGCATT
1 AT-AACT--TA-C
48152697 ATTAACTTAC
1 A-TAACTTAC
48152707 ATAACTTAC
1 ATAACTTAC
* *
48152716 ATAAATTAA
1 ATAACTTAC
48152725 ATAACTTAC
1 ATAACTTAC
48152734 ATAACTTAC
1 ATAACTTAC
* *
48152743 ATTA--TAT
1 ATAACTTAC
48152750 ATAACCTT-C
1 ATAA-CTTAC
*
48152759 TTAACTTAC
1 ATAACTTAC
*
48152768 ATTA--TAC
1 ATAACTTAC
* *
48152775 ACAACTCAC
1 ATAACTTAC
48152784 ATAA-TTA-
1 ATAACTTAC
*
48152791 AT-ATTATAC
1 ATAACT-TAC
*
48152800 ACAACTTAC
1 ATAACTTAC
*
48152809 ATAA--TAT
1 ATAACTTAC
*
48152816 ATTACTTAC
1 ATAACTTAC
48152825 ATAACTTAC
1 ATAACTTAC
*
48152834 ATTACTTAC
1 ATAACTTAC
48152843 AGT-ACTTAC
1 A-TAACTTAC
48152852 ATAA--TAC
1 ATAACTTAC
48152859 ATAA--TAC
1 ATAACTTAC
48152866 ATAACTTAC
1 ATAACTTAC
48152875 ATAA
1 ATAA
48152879 TACATAAAAA
Statistics
Matches: 571, Mismatches: 132, Indels: 86
0.72 0.17 0.11
Matches are distributed among these distances:
6 1 0.00
7 45 0.08
8 23 0.04
9 445 0.78
10 41 0.07
11 2 0.00
12 8 0.01
13 5 0.01
14 1 0.00
ACGTcount: A:0.47, C:0.17, G:0.02, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:48152136 original size:21 final size:21
Alignment explanation
Indices: 48152055--48152614 Score: 112
Period size: 18 Copynumber: 29.3 Consensus size: 21
48152045 ATATATAATA
*
48152055 ACATAATAAATTACATAA--T
1 ACATAATAACTTACATAACTT
48152074 ACATAATAACATAATACATAACTT
1 ACATAATAAC-T--TACATAACTT
* **
48152098 ATAT-ATAAGCTTGTATAACTT
1 ACATAATAA-CTTACATAACTT
*
48152119 ACATAATAACTTCCATAACTT
1 ACATAATAACTTACATAACTT
* *
48152140 ACATAGCTTACTTAATACATAACTT
1 ACATA-ATAAC-T--TACATAACTT
*
48152165 ACATAACTTATACACATACATAACTT
1 ACAT-A---ATA-ACTTACATAACTT
* *
48152191 ACATAAT-A--TATA-AACAT
1 ACATAATAACTTACATAACTT
* * *
48152208 ATATAGA-AACTCACATAAATT
1 ACATA-ATAACTTACATAACTT
48152229 --A-AATAACTTACATAACTT
1 ACATAATAACTTACATAACTT
*
48152247 ACAT-A-AA-TTAAATAACTT
1 ACATAATAACTTACATAACTT
* *
48152265 ACAT-A-AA-TTAAATAATTT
1 ACATAATAACTTACATAACTT
*
48152283 AC---ATAACTTACATAAATT
1 ACATAATAACTTACATAACTT
*
48152301 --A-AATAACTTAAATAACTT
1 ACATAATAACTTACATAACTT
48152319 ACAT-A-AA-TTA-ATTAACTT
1 ACATAATAACTTACA-TAACTT
48152337 AC---ATAACTTACATAA---
1 ACATAATAACTTACATAACTT
48152352 AC-TAAATAACTTACATAACTT
1 ACAT-AATAACTTACATAACTT
**
48152373 ACAT-A-AA-TTTTATAACTT
1 ACATAATAACTTACATAACTT
* *
48152391 AC---ATAACTTAAATAAATT
1 ACATAATAACTTACATAACTT
48152409 --A-AATAACTTACATAACTT
1 ACATAATAACTTACATAACTT
* * ** **
48152427 CCGT--GGACTTACATAACCG
1 ACATAATAACTTACATAACTT
*
48152446 ACAT-A-AA-TTAAATAACTT
1 ACATAATAACTTACATAACTT
*
48152464 ACAT-A-AAC-TAAATAACTT
1 ACATAATAACTTACATAACTT
* *
48152482 AC---ATAACCTACATAAATT
1 ACATAATAACTTACATAACTT
48152500 --A-AATAACTTACATAACTT
1 ACATAATAACTTACATAACTT
* * **
48152518 CCGT--GGACTTACATAACTT
1 ACATAATAACTTACATAACTT
* *
48152537 ACAT-A-AA-TTAAATAGCTT
1 ACATAATAACTTACATAACTT
48152555 AC---ATAACTTACATAA---
1 ACATAATAACTTACATAACTT
48152570 AC-TAAATAACTTACATAACTT
1 ACAT-AATAACTTACATAACTT
*
48152591 ACAT-A-AA-TTAAATAACTT
1 ACATAATAACTTACATAACTT
48152609 ACATAA
1 ACATAA
48152615 CTTACATAAA
Statistics
Matches: 410, Mismatches: 62, Indels: 138
0.67 0.10 0.23
Matches are distributed among these distances:
15 4 0.01
16 5 0.01
17 21 0.05
18 226 0.55
19 50 0.12
20 10 0.02
21 33 0.08
22 18 0.04
23 6 0.01
24 5 0.01
25 14 0.03
26 15 0.04
28 1 0.00
29 2 0.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (21 bp):
ACATAATAACTTACATAACTT
Found at i:48152816 original size:66 final size:65
Alignment explanation
Indices: 48152731--48152885 Score: 172
Period size: 66 Copynumber: 2.4 Consensus size: 65
48152721 TTAAATAACT
* *
48152731 TACATAACTTACATTATATATAACCTT-CTTAACTTACATTA-TACACAACTCACATAATTA-AT
1 TACATAACTTACATAATATATAA-CTTACATAACTTACATTACTACACAACTCACATAA-TACAT
48152793 ATTA
64 A--A
* * ** *
48152797 TACACAACTTACATAATATATTACTTACATAACTTACATTACTTACAGTACTTACATAATACATA
1 TACATAACTTACATAATATATAACTTACATAACTTACATTAC-TACACAACTCACATAATACATA
48152862 A
65 A
*
48152863 TACATAACTTACATAATACATAA
1 TACATAACTTACATAATATATAA
48152886 AAATATATCA
Statistics
Matches: 75, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
65 3 0.04
66 54 0.72
67 2 0.03
68 16 0.21
ACGTcount: A:0.45, C:0.19, G:0.01, T:0.35
Consensus pattern (65 bp):
TACATAACTTACATAATATATAACTTACATAACTTACATTACTACACAACTCACATAATACATAA
Found at i:48152824 original size:16 final size:17
Alignment explanation
Indices: 48152803--48152883 Score: 66
Period size: 16 Copynumber: 4.9 Consensus size: 17
48152793 ATTATACACA
*
48152803 ACTTACATAA-TATATT
1 ACTTACATAACTACATT
48152819 ACTTACATAACTTACATT
1 ACTTACATAAC-TACATT
48152837 ACTTACAGT-ACTTACA-T
1 ACTTACA-TAAC-TACATT
* *
48152854 A-ATACATAA-TACATA
1 ACTTACATAACTACATT
48152869 ACTTACATAA-TACAT
1 ACTTACATAACTACAT
48152884 AAAAATATAT
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
14 4 0.07
15 2 0.04
16 27 0.49
17 2 0.04
18 19 0.35
19 1 0.02
ACGTcount: A:0.44, C:0.19, G:0.01, T:0.36
Consensus pattern (17 bp):
ACTTACATAACTACATT
Found at i:48152861 original size:7 final size:7
Alignment explanation
Indices: 48152849--48152885 Score: 56
Period size: 7 Copynumber: 5.0 Consensus size: 7
48152839 TTACAGTACT
48152849 TACATAA
1 TACATAA
48152856 TACATAA
1 TACATAA
48152863 TACATAA
1 TACATAA
48152870 CTTACATAA
1 --TACATAA
48152879 TACATAA
1 TACATAA
48152886 AAATATATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 21 0.75
9 7 0.25
ACGTcount: A:0.54, C:0.16, G:0.00, T:0.30
Consensus pattern (7 bp):
TACATAA
Found at i:48158873 original size:43 final size:43
Alignment explanation
Indices: 48158824--48158987 Score: 188
Period size: 43 Copynumber: 3.8 Consensus size: 43
48158814 GTTTTTGTAC
* *
48158824 AAAAGCGCCGCTAAAGAACATGTTCTGTAGCGGCGTTTGTAAA
1 AAAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTCTAAA
* * * *
48158867 AAAAGCGCAGCTAAA-AATCATGTTCTTCAGCGGCGTTTTTATA
1 AAAAGCGCCGCTAAAGAA-CATGTTCTTTAGCGGCGTTTCTAAA
* * *
48158910 CAAAGCGCCGTTAAAGAACATGTTCTTTAGCGGCGCTTACTAAA
1 AAAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTCTAAA
* * *
48158954 AAAA-CGCCACTAAATATCATGTTCTTTAGCGGCG
1 AAAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCG
48158988 CTTATATAAA
Statistics
Matches: 101, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 2 0.02
43 89 0.88
44 10 0.10
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTCTAAA
Found at i:48158931 original size:86 final size:87
Alignment explanation
Indices: 48158811--48158987 Score: 252
Period size: 86 Copynumber: 2.0 Consensus size: 87
48158801 CAAAAATAGT
* **
48158811 GGCGTTTTTGTACAAAAGCGCCGCTAAAGAACATGTTCTGTAGCGGCG-TTTGTAAAAAAA-GCG
1 GGCGTTTTTATACAAAAGCGCCGCTAAAGAACATGTTCTGTAGCGGCGCTTACTAAAAAAACGC-
48158874 CAGCTAAAAATCATGTTCTTCAGC
65 CA-CTAAAAATCATGTTCTTCAGC
* *
48158898 GGCGTTTTTATAC-AAAGCGCCGTTAAAGAACATGTTCTTTAGCGGCGCTTACTAAAAAAACGCC
1 GGCGTTTTTATACAAAAGCGCCGCTAAAGAACATGTTCTGTAGCGGCGCTTACTAAAAAAACGCC
* *
48158962 ACTAAATATCATGTTCTTTAGC
66 ACTAAAAATCATGTTCTTCAGC
48158984 GGCG
1 GGCG
48158988 CTTATATAAA
Statistics
Matches: 81, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
86 55 0.68
87 24 0.30
88 2 0.02
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (87 bp):
GGCGTTTTTATACAAAAGCGCCGCTAAAGAACATGTTCTGTAGCGGCGCTTACTAAAAAAACGCC
ACTAAAAATCATGTTCTTCAGC
Found at i:48163035 original size:23 final size:21
Alignment explanation
Indices: 48162986--48163036 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
48162976 GGATTATAAC
*
48162986 TAATAATTCTAAATTAAATTA
1 TAATATTTCTAAATTAAATTA
*
48163007 TAAATATTTCTAAATGTCAATTA
1 T-AATATTTCTAAAT-TAAATTA
48163030 GTAATAT
1 -TAATAT
48163037 GGTAGGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 1 0.04
22 12 0.48
23 11 0.44
24 1 0.04
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (21 bp):
TAATATTTCTAAATTAAATTA
Found at i:48165201 original size:18 final size:17
Alignment explanation
Indices: 48165159--48165203 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
48165149 ACATTTATGT
48165159 TTGATTTGTTTCTTTAG
1 TTGATTTGTTTCTTTAG
*
48165176 TTGCTTTGTCTTCTTT-G
1 TTGATTTGT-TTCTTTAG
48165193 ATTGATTTGTT
1 -TTGATTTGTT
48165204 GTTAAAATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.09, C:0.09, G:0.18, T:0.64
Consensus pattern (17 bp):
TTGATTTGTTTCTTTAG
Found at i:48171177 original size:34 final size:34
Alignment explanation
Indices: 48171133--48171200 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
48171123 GCACAGTTGA
* *
48171133 ACAGTCTTGGGCCTAAGCCCTTTTCAGTATCAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTA-CAGTG
* *
48171168 ACAGT-TTGGGGCTTAGCCCATCTCAGTACAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTACAGTG
48171201 TCAAAAATGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 5 0.17
34 19 0.66
35 5 0.17
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (34 bp):
ACAGTCTTGGGCCTAAGCCCATCTCAGTACAGTG
Found at i:48174773 original size:29 final size:27
Alignment explanation
Indices: 48174741--48174816 Score: 73
Period size: 29 Copynumber: 2.7 Consensus size: 27
48174731 TTATCTTTGC
*
48174741 TTAATAGTTTTATAATTTTTAATTATATT
1 TTAATATTTTTATAATTTTTAA-TA-ATT
* *
48174770 TTAA-ATTTTTTACAATTTATAATAATT
1 TTAATA-TTTTTATAATTTTTAATAATT
*
48174797 TTCAATTTTTTTATAATTTT
1 TT-AATATTTTTATAATTTT
48174817 ATTACAATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
27 5 0.13
28 16 0.42
29 17 0.45
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (27 bp):
TTAATATTTTTATAATTTTTAATAATT
Found at i:48174795 original size:39 final size:39
Alignment explanation
Indices: 48174752--48174826 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 39
48174742 TAATAGTTTT
*
48174752 ATAATTTTTAATTATATTTTA-AATTTT-TTACAATTTATA
1 ATAATTTTCAATT-T-TTTTATAATTTTATTACAATTTATA
48174791 ATAATTTTCAATTTTTTTATAATTTTATTACAATTT
1 ATAATTTTCAATTTTTTTATAATTTTATTACAATTT
48174827 CAATAATCTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
37 5 0.15
38 7 0.21
39 21 0.64
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (39 bp):
ATAATTTTCAATTTTTTTATAATTTTATTACAATTTATA
Found at i:48174817 original size:29 final size:30
Alignment explanation
Indices: 48174748--48174818 Score: 87
Period size: 28 Copynumber: 2.5 Consensus size: 30
48174738 TGCTTAATAG
48174748 TTTTATAATTTT-TAATTATATTTTAAATT
1 TTTTATAATTTTATAATTATATTTTAAATT
* *
48174777 TTTTACAA-TTTATAA-TA-ATTTTCAATTT
1 TTTTATAATTTTATAATTATATTTT-AAATT
48174805 TTTTATAATTTTAT
1 TTTTATAATTTTAT
48174819 TACAATTTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
27 5 0.14
28 16 0.44
29 15 0.42
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (30 bp):
TTTTATAATTTTATAATTATATTTTAAATT
Found at i:48174827 original size:28 final size:27
Alignment explanation
Indices: 48174748--48174830 Score: 76
Period size: 28 Copynumber: 2.9 Consensus size: 27
48174738 TGCTTAATAG
* * *
48174748 TTTTATAATTTTTAATTATATTTTAAATT
1 TTTTATAA-TTTT-ATTAAATTTCAATTT
* * *
48174777 TTTTACAATTTATAATAATTTTCAATTT
1 TTTTATAATTT-TATTAAATTTCAATTT
48174805 TTTTATAATTTTATTACAATTTCAAT
1 TTTTATAATTTTATTA-AATTTCAAT
48174831 AATCTATTAA
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
27 4 0.09
28 31 0.72
29 8 0.19
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (27 bp):
TTTTATAATTTTATTAAATTTCAATTT
Found at i:48179239 original size:37 final size:37
Alignment explanation
Indices: 48179189--48179267 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
48179179 TTATTACGAA
* * *
48179189 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
48179226 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
48179263 GTCTT
1 GTCTT
48179268 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:48179459 original size:47 final size:47
Alignment explanation
Indices: 48179386--48179945 Score: 807
Period size: 47 Copynumber: 11.7 Consensus size: 47
48179376 CCCTTCGGGA
* * * * * *
48179386 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGAC
1 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * * * *
48179433 CCTGTCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
48179480 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
48179527 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
48179574 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
48179623 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48179672 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48179719 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTGGGC
1 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48179768 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48179817 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48179864 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
48179911 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATTTATACACT-TTCACATTCATCACAT
48179946 AGAATCCTAA
Statistics
Matches: 485, Mismatches: 23, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 298 0.61
49 186 0.38
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:48179630 original size:96 final size:94
Alignment explanation
Indices: 48179386--48179945 Score: 843
Period size: 96 Copynumber: 5.9 Consensus size: 94
48179376 CCCTTCGGGA
* * * * * * * * * *
48179386 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGACCCTGTCACATTTATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * * * *
48179451 TTTCACATCCATCACGTTGGCCACTCGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
48179480 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
48179545 TTTCACATTCATCACATTGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
48179574 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
48179639 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
48179672 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
48179737 ACTTTCACATTCATCACATCGGCCATTGGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
48179768 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
48179833 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
48179864 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
48179928 TGTTCACATCCATCACAT
66 T-TTCACATTCATCACAT
48179946 AGAATCCTAA
Statistics
Matches: 436, Mismatches: 23, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
93 1 0.00
94 155 0.36
96 188 0.43
98 92 0.21
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:48179677 original size:145 final size:145
Alignment explanation
Indices: 48179386--48179924 Score: 874
Period size: 145 Copynumber: 3.8 Consensus size: 145
48179376 CCCTTCGGGA
* * * * * * * * *
48179386 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGACCCTGTCACAT-T-TATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * * * * *
48179449 ACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
48179512 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
*
48179527 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
48179592 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
48179657 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
48179672 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
48179737 ACTTTCACATTCATCACATCGGCCATTGGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
*
48179802 CATCGACCATTAGGC
131 CATCGGCCATTAGGC
48179817 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
48179880 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
48179925 GCATGTTCAC
Statistics
Matches: 376, Mismatches: 18, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
141 49 0.13
142 1 0.00
143 90 0.24
145 236 0.63
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (145 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
CATCGGCCATTAGGC
Found at i:48190313 original size:12 final size:12
Alignment explanation
Indices: 48190296--48190320 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
48190286 GGTTTATTCT
48190296 AAAATTATAAAA
1 AAAATTATAAAA
48190308 AAAATTATAAAA
1 AAAATTATAAAA
48190320 A
1 A
48190321 CCAACAAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAATTATAAAA
Found at i:48190651 original size:95 final size:97
Alignment explanation
Indices: 48190537--48190753 Score: 248
Period size: 95 Copynumber: 2.2 Consensus size: 97
48190527 AAAGACAATT
* * *
48190537 TAATTTTTTATGGTTTTTAATTAAATTCTAACAATTTTTTAAAATTAAAT-TCTTTCTAATTTTT
1 TAATATTTTATGGTTTTTAATTAAATTCTAACAATTTTTTAAAAAT-AATGT-TTTCTAA-ATTT
* *
48190601 TTATGG-TTTT-T-A-ATTTTTTTTCTAAATTTTC
63 GTATGGTTTTTATAATATTTTTTTTCTAAATTTTA
* * * *
48190632 TAA-ATATTTATGGTTTTTAATTAATTTCTATCAGTTTTTTAAAAATCATGTTTTCTAAATTTGT
1 TAATAT-TTTATGGTTTTTAATTAAATTCTAACAATTTTTTAAAAATAATGTTTTCTAAATTTGT
48190696 ATGGTTTTTAATAAATTATTTTTTTTCTAAATTTTA
65 ATGGTTTTT-AT-AA-TATTTTTTTTCTAAATTTTA
48190732 TAATATTTTATGGTTTTTAATT
1 TAATATTTTATGGTTTTTAATT
48190754 TTTAATTAAA
Statistics
Matches: 103, Mismatches: 9, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
93 8 0.08
94 14 0.14
95 40 0.39
96 1 0.01
98 1 0.01
100 37 0.36
101 2 0.02
ACGTcount: A:0.29, C:0.05, G:0.06, T:0.59
Consensus pattern (97 bp):
TAATATTTTATGGTTTTTAATTAAATTCTAACAATTTTTTAAAAATAATGTTTTCTAAATTTGTA
TGGTTTTTATAATATTTTTTTTCTAAATTTTA
Found at i:48191661 original size:15 final size:17
Alignment explanation
Indices: 48191641--48191677 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
48191631 TTCTAATTTT
48191641 TTTTTCA-TTTCT-TCC
1 TTTTTCATTTTCTCTCC
48191656 TTTTTCATTTTCTCTCC
1 TTTTTCATTTTCTCTCC
48191673 TTTTT
1 TTTTT
48191678 GACAAACAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 7 0.35
16 5 0.25
17 8 0.40
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTCATTTTCTCTCC
Found at i:48204101 original size:30 final size:29
Alignment explanation
Indices: 48204042--48204286 Score: 154
Period size: 29 Copynumber: 8.5 Consensus size: 29
48204032 GTCATAACCG
* * **
48204042 TCCCTTTTCATATTCGATGGTTGAAACCA
1 TCCCTTTTCATAATCGATGGTCGTCACCA
** *
48204071 TCTGTTTTCATTAATCGATGGTCGTTACCA
1 TCCCTTTTCA-TAATCGATGGTCGTCACCA
* * *
48204101 TCCCTTTTCATAGTTGATGGTTGTCACCA
1 TCCCTTTTCATAATCGATGGTCGTCACCA
** *** *
48204130 TCCCTTTTCATAATCGATATTCAAAACTA
1 TCCCTTTTCATAATCGATGGTCGTCACCA
*** *** *
48204159 TCCCTTTTC--AATCGATAACCAAAACTA
1 TCCCTTTTCATAATCGATGGTCGTCACCA
* * *
48204186 TCGCTTTTTATATTCGATGGTCGTCACCA
1 TCCCTTTTCATAATCGATGGTCGTCACCA
**
48204215 TCCCTTTTCATTGGT-GATGGTCGTCACCA
1 TCCCTTTTCA-TAATCGATGGTCGTCACCA
** **
48204244 TCCCTTTTCATTGTTAATGGTCGTCACCA
1 TCCCTTTTCATAATCGATGGTCGTCACCA
*
48204273 TCCCTTTTAATAAT
1 TCCCTTTTCATAAT
48204287 TAATAGTCGA
Statistics
Matches: 169, Mismatches: 42, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
27 23 0.14
28 3 0.02
29 118 0.70
30 25 0.15
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.40
Consensus pattern (29 bp):
TCCCTTTTCATAATCGATGGTCGTCACCA
Found at i:48204161 original size:29 final size:29
Alignment explanation
Indices: 48204129--48204203 Score: 91
Period size: 27 Copynumber: 2.7 Consensus size: 29
48204119 GGTTGTCACC
**
48204129 ATCCCTTTTCATAATCGATATTCAAAACT
1 ATCCCTTTTCATAATCGATAACCAAAACT
48204158 ATCCCTTTTC--AATCGATAACCAAAACT
1 ATCCCTTTTCATAATCGATAACCAAAACT
* * *
48204185 ATCGCTTTTTATATTCGAT
1 ATCCCTTTTCATAATCGAT
48204204 GGTCGTCACC
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
27 23 0.59
29 16 0.41
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAACCAAAACT
Found at i:48204304 original size:143 final size:144
Alignment explanation
Indices: 48204045--48204311 Score: 365
Period size: 143 Copynumber: 1.9 Consensus size: 144
48204035 ATAACCGTCC
* ** *
48204045 CTTTTCATATTCGATGGTTGAAACCATCTGTTTTCATTAATCGATGGTCGTTACCATCCCTTTTC
1 CTTTTCATATTCGATGGTCGAAACCATCCCTTTTCATTAATCGATGGTCGTCACCATCCCTTTTC
* * * * *
48204110 ATAGTTGATGGTTGTCACCATCCCTTTTCATAATCGATATTCAAAACTATCCCTTTTCAATCGAT
66 ATAGTTAATGGTCGTCACCATCCCTTTTAATAATCAATAGTCAAAACTATCCCTTTTCAATCGAT
48204175 AACCAAAACTATCG
131 AACCAAAACTATCG
* ** **
48204189 CTTTTTATATTCGATGGTCGTCACCATCCCTTTTCATTGGT-GATGGTCGTCACCATCCCTTTTC
1 CTTTTCATATTCGATGGTCGAAACCATCCCTTTTCATTAATCGATGGTCGTCACCATCCCTTTTC
* * * *
48204253 ATTGTTAATGGTCGTCACCATCCCTTTTAATAATTAATAGTCGAAGCTATCCCTTTTCA
66 ATAGTTAATGGTCGTCACCATCCCTTTTAATAATCAATAGTCAAAACTATCCCTTTTCA
48204312 TTGGTTGATG
Statistics
Matches: 105, Mismatches: 18, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
143 72 0.69
144 33 0.31
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (144 bp):
CTTTTCATATTCGATGGTCGAAACCATCCCTTTTCATTAATCGATGGTCGTCACCATCCCTTTTC
ATAGTTAATGGTCGTCACCATCCCTTTTAATAATCAATAGTCAAAACTATCCCTTTTCAATCGAT
AACCAAAACTATCG
Found at i:48209413 original size:39 final size:39
Alignment explanation
Indices: 48209368--48209567 Score: 197
Period size: 39 Copynumber: 5.1 Consensus size: 39
48209358 AATAGAAATA
* *
48209368 CGGTGATTATTCAGGTTATGTGCCTAGCAAGCTGTGTGC
1 CGGTGATTATTCAGGCTATGTGCCTAGCAGGCTGTGTGC
* * *
48209407 TGGTGATTATTC-GAGCTATGTGCCTAACAGGTTGTGTGC
1 CGGTGATTATTCAG-GCTATGTGCCTAGCAGGCTGTGTGC
* * * *
48209446 CAGTGATTATTCAGGCTATGTGCTTAGTAGGCTGTGTAC
1 CGGTGATTATTCAGGCTATGTGCCTAGCAGGCTGTGTGC
** * *
48209485 AAGTGATTATTCAGGCTTTGTGCCTAGTAGGCTGTGTGC
1 CGGTGATTATTCAGGCTATGTGCCTAGCAGGCTGTGTGC
* * * * * *
48209524 CGATGGTTATTCGGGATATGTGCC-AGGCAAGCTATGTGC
1 CGGTGATTATTCAGGCTATGTGCCTA-GCAGGCTGTGTGC
48209563 CGGTG
1 CGGTG
48209568 TATTGAAAAT
Statistics
Matches: 131, Mismatches: 27, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
38 2 0.02
39 128 0.98
40 1 0.01
ACGTcount: A:0.18, C:0.17, G:0.32, T:0.34
Consensus pattern (39 bp):
CGGTGATTATTCAGGCTATGTGCCTAGCAGGCTGTGTGC
Found at i:48218645 original size:21 final size:20
Alignment explanation
Indices: 48218604--48218644 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
48218594 TCCAGCGTTG
48218604 ATTTTGTAAGTGTTCTAAAA
1 ATTTTGTAAGTGTTCTAAAA
*
48218624 ATTTTGATAAGT-TTTTAAAA
1 ATTTTG-TAAGTGTTCTAAAA
48218644 A
1 A
48218645 AATGAGTAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.46
Consensus pattern (20 bp):
ATTTTGTAAGTGTTCTAAAA
Found at i:48228851 original size:22 final size:22
Alignment explanation
Indices: 48228826--48228881 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
48228816 CGCTTTAGCT
48228826 CTTACTGTTCTACACTTCGGTG
1 CTTACTGTTCTACACTTCGGTG
* *
48228848 CTTAGTGATT-TGCACTTCGGTG
1 CTTACTG-TTCTACACTTCGGTG
48228870 CTTACTGTTCTA
1 CTTACTGTTCTA
48228882 TTAGTGCACT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 2 0.07
22 24 0.86
23 2 0.07
ACGTcount: A:0.14, C:0.23, G:0.20, T:0.43
Consensus pattern (22 bp):
CTTACTGTTCTACACTTCGGTG
Found at i:48230431 original size:28 final size:28
Alignment explanation
Indices: 48230379--48230465 Score: 81
Period size: 28 Copynumber: 3.0 Consensus size: 28
48230369 TAATTAATTT
*
48230379 AAAT-TATTTATAAAATTAATGATACATA
1 AAATATATTTAAAAAATTAAT-ATACATA
48230407 AAATAT-TTTAAAAAATTAAATATACTAATA
1 AAATATATTTAAAAAATT-AATATAC--ATA
* *
48230437 AATTATATTTAAATAATTTAATATA-ATA
1 AAATATATTTAAA-AAATTAATATACATA
48230465 A
1 A
48230466 TACATGAAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
28 22 0.44
29 4 0.08
30 8 0.16
31 12 0.24
32 4 0.08
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.40
Consensus pattern (28 bp):
AAATATATTTAAAAAATTAATATACATA
Found at i:48230460 original size:31 final size:30
Alignment explanation
Indices: 48230404--48230467 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 30
48230394 TTAATGATAC
*
48230404 ATAAAATATTTTAAAAAATTAAATATACTA
1 ATAAAATATTTTAAAAAATTAAATATAATA
* * *
48230434 ATAAATTATATTTAAATAATTTAATATAATA
1 ATAAAATAT-TTTAAAAAATTAAATATAATA
48230465 ATA
1 ATA
48230468 CATGAAATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 8 0.28
31 21 0.72
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (30 bp):
ATAAAATATTTTAAAAAATTAAATATAATA
Found at i:48230493 original size:33 final size:33
Alignment explanation
Indices: 48230391--48230509 Score: 109
Period size: 33 Copynumber: 3.7 Consensus size: 33
48230381 ATTATTTATA
* * *
48230391 AAAT-TAATGATACATAAAATATTTTAAAAAATT
1 AAATATAATAATACATAAAATA-CTTAAATAATT
* ** *
48230424 AAATATACTAATA-A-ATTATATTTAAATAATT
1 AAATATAATAATACATAAAATACTTAAATAATT
* * *
48230455 TAATATAATAATACATGAAATACTTAAATACTT
1 AAATATAATAATACATAAAATACTTAAATAATT
*
48230488 AAATATAATAATGCATAAAATA
1 AAATATAATAATACATAAAATA
48230510 TAAATTAATC
Statistics
Matches: 68, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
31 21 0.31
32 5 0.07
33 36 0.53
34 6 0.09
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (33 bp):
AAATATAATAATACATAAAATACTTAAATAATT
Found at i:48231582 original size:36 final size:35
Alignment explanation
Indices: 48231542--48231611 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
48231532 TAATTATTAG
*
48231542 AAATTAATTAATAA-ACATAAAATTTACAAAAAAAAC
1 AAATT-ATTAA-AAGACATAAAAATTACAAAAAAAAC
* *
48231578 AAATTATTAAAAGCCATAAAAATTAGAAAAAAAA
1 AAATTATTAAAAGACATAAAAATTACAAAAAAAA
48231612 TAATTTTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
34 2 0.07
35 23 0.77
36 5 0.17
ACGTcount: A:0.67, C:0.07, G:0.03, T:0.23
Consensus pattern (35 bp):
AAATTATTAAAAGACATAAAAATTACAAAAAAAAC
Found at i:48231866 original size:44 final size:44
Alignment explanation
Indices: 48231815--48231898 Score: 159
Period size: 44 Copynumber: 1.9 Consensus size: 44
48231805 TTGAAATAAA
*
48231815 ATAGAAGTTGTGATAATTATACATTTAAAAATAATTATAACTTG
1 ATAGAAGTTGTGATAATTACACATTTAAAAATAATTATAACTTG
48231859 ATAGAAGTTGTGATAATTACACATTTAAAAATAATTATAA
1 ATAGAAGTTGTGATAATTACACATTTAAAAATAATTATAA
48231899 TTTAAATTAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.48, C:0.05, G:0.11, T:0.37
Consensus pattern (44 bp):
ATAGAAGTTGTGATAATTACACATTTAAAAATAATTATAACTTG
Found at i:48231894 original size:18 final size:17
Alignment explanation
Indices: 48231871--48231904 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
48231861 AGAAGTTGTG
48231871 ATAATTACACATTTAAAA
1 ATAATTACA-ATTTAAAA
*
48231889 ATAATTATAATTTAAA
1 ATAATTACAATTTAAA
48231905 TTACAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (17 bp):
ATAATTACAATTTAAAA
Found at i:48234794 original size:14 final size:14
Alignment explanation
Indices: 48234775--48234839 Score: 60
Period size: 14 Copynumber: 4.4 Consensus size: 14
48234765 TTGGCAAAGC
48234775 AAGAAAGAAGAGAA
1 AAGAAAGAAGAGAA
48234789 AAGAAAGAAGAAGAA
1 AAGAAAGAAG-AGAA
* *
48234804 AAGGAAAATAACAGAA
1 AA-G-AAAGAAGAGAA
*
48234820 ACATAAAGAA-AGAA
1 A-AGAAAGAAGAGAA
48234834 AAGAAA
1 AAGAAA
48234840 AATGTGCAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
13 4 0.10
14 15 0.36
15 11 0.26
16 6 0.14
17 6 0.14
ACGTcount: A:0.72, C:0.03, G:0.22, T:0.03
Consensus pattern (14 bp):
AAGAAAGAAGAGAA
Found at i:48242744 original size:20 final size:20
Alignment explanation
Indices: 48242721--48242759 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
48242711 AGATGAAAAC
48242721 AACATTTGAATTATGATTTA
1 AACATTTGAATTATGATTTA
* *
48242741 AACATTTGATTTATTATTT
1 AACATTTGAATTATGATTT
48242760 TTAGGAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (20 bp):
AACATTTGAATTATGATTTA
Found at i:48251772 original size:12 final size:12
Alignment explanation
Indices: 48251754--48251783 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
48251744 TATCGCAAAG
48251754 AAAATAGAAATA
1 AAAATAGAAATA
*
48251766 GAAATAGAAATA
1 AAAATAGAAATA
48251778 AAAATA
1 AAAATA
48251784 AAGAACACAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (12 bp):
AAAATAGAAATA
Found at i:48256838 original size:15 final size:15
Alignment explanation
Indices: 48256818--48256860 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
48256808 ATGATTTTAA
*
48256818 TGGAATGTAATTTTT
1 TGGAATGTAATTGTT
*
48256833 TGGAATGTAGTTGTT
1 TGGAATGTAATTGTT
* *
48256848 AGGAATGTGATTG
1 TGGAATGTAATTG
48256861 CTTGAAAAGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.30, T:0.44
Consensus pattern (15 bp):
TGGAATGTAATTGTT
Found at i:48257889 original size:17 final size:17
Alignment explanation
Indices: 48257869--48257906 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
48257859 TATAAAATAT
*
48257869 AATTTATAA-TAATTATA
1 AATTTAAAACTAATTA-A
48257886 AATTTAAAACTAATTAA
1 AATTTAAAACTAATTAA
48257903 AATT
1 AATT
48257907 AATTAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
AATTTAAAACTAATTAA
Found at i:48263192 original size:16 final size:16
Alignment explanation
Indices: 48263159--48263227 Score: 86
Period size: 16 Copynumber: 4.3 Consensus size: 16
48263149 TTTGATTACC
**
48263159 ATAATAGAATAGTCTT
1 ATAATAGAATAGAGTT
48263175 ATAATTAG-ATAGAGTT
1 ATAA-TAGAATAGAGTT
*
48263191 ATAATAGAATAAAGTT
1 ATAATAGAATAGAGTT
*
48263207 ATAATAGAATAGAGCT
1 ATAATAGAATAGAGTT
48263223 ATAAT
1 ATAAT
48263228 CAGTAATTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
15 3 0.07
16 40 0.87
17 3 0.07
ACGTcount: A:0.49, C:0.03, G:0.14, T:0.33
Consensus pattern (16 bp):
ATAATAGAATAGAGTT
Found at i:48263479 original size:23 final size:21
Alignment explanation
Indices: 48263448--48263490 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
48263438 CATTATATGA
48263448 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
48263471 ATTATAAAAATAATATATAA
1 ATTAAAAAAATAATATATAA
48263491 CCTACTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:48273155 original size:14 final size:14
Alignment explanation
Indices: 48273136--48273165 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
48273126 TGAGAGATGA
48273136 GAGGGATGAGGGAT
1 GAGGGATGAGGGAT
48273150 GAGGGATGAGGGAT
1 GAGGGATGAGGGAT
48273164 GA
1 GA
48273166 TTGAAAAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.57, T:0.13
Consensus pattern (14 bp):
GAGGGATGAGGGAT
Found at i:48277744 original size:50 final size:50
Alignment explanation
Indices: 48277620--48277868 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
48277610 GATAATAACA
* * ** * *
48277620 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
48277671 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
48277721 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
48277771 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
48277826 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
48277869 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:48277798 original size:100 final size:104
Alignment explanation
Indices: 48277619--48277868 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
48277609 TGATAATAAC
**
48277619 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
48277684 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
48277721 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
48277784 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
48277826 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
48277869 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:48277984 original size:13 final size:13
Alignment explanation
Indices: 48277963--48277994 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
48277953 GCTTGGATCA
*
48277963 TCATCAAATAAAT
1 TCATAAAATAAAT
48277976 TCATAAAATAAAT
1 TCATAAAATAAAT
48277989 TCATAA
1 TCATAA
48277995 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:48278264 original size:29 final size:30
Alignment explanation
Indices: 48278205--48278261 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
48278195 CCTCGACTCT
*
48278205 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
48278235 AACTTTTACATAATTACATTTTTGCCC
1 AACTTTTACAAAATTACAATTTTGCCC
48278262 TAAGGCTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.04, T:0.42
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:48286129 original size:7 final size:7
Alignment explanation
Indices: 48286103--48286167 Score: 53
Period size: 7 Copynumber: 9.3 Consensus size: 7
48286093 TGAGAGCTAA
*
48286103 GAGAGTT
1 GAGAGAT
48286110 GAGAGA-
1 GAGAGAT
48286116 GAG-GAT
1 GAGAGAT
48286122 GAGAGAT
1 GAGAGAT
48286129 GAGAGGGAT
1 GAGA--GAT
*
48286138 GAGGGAT
1 GAGAGAT
*
48286145 GAGGGAT
1 GAGAGAT
*
48286152 GAGGGAT
1 GAGAGAT
*
48286159 GAGGGAT
1 GAGAGAT
48286166 GA
1 GA
48286168 TTGAAAAAGT
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
5 2 0.04
6 6 0.12
7 38 0.73
9 6 0.12
ACGTcount: A:0.34, C:0.00, G:0.52, T:0.14
Consensus pattern (7 bp):
GAGAGAT
Found at i:48286150 original size:14 final size:14
Alignment explanation
Indices: 48286131--48286167 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
48286121 TGAGAGATGA
48286131 GAGGGATGAGGGAT
1 GAGGGATGAGGGAT
48286145 GAGGGATGAGGGAT
1 GAGGGATGAGGGAT
48286159 GAGGGATGA
1 GAGGGATGA
48286168 TTGAAAAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.57, T:0.14
Consensus pattern (14 bp):
GAGGGATGAGGGAT
Found at i:48296031 original size:10 final size:10
Alignment explanation
Indices: 48296016--48296067 Score: 56
Period size: 11 Copynumber: 5.3 Consensus size: 10
48296006 CAAATAATTT
48296016 AAAAATTATA
1 AAAAATTATA
48296026 AAAAA-T-T-
1 AAAAATTATA
48296033 AAAAATTAATA
1 AAAAATT-ATA
48296044 AAAAATTATA
1 AAAAATTATA
*
48296054 AAAAGATCATA
1 AAAA-ATTATA
48296065 AAA
1 AAA
48296068 TTTCAAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
7 5 0.14
8 2 0.06
9 1 0.03
10 13 0.36
11 15 0.42
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (10 bp):
AAAAATTATA
Found at i:48296037 original size:18 final size:18
Alignment explanation
Indices: 48296014--48296056 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
48296004 AACAAATAAT
48296014 TTAAAAATT-ATAAAAAA
1 TTAAAAATTAATAAAAAA
48296031 TTAAAAATTAATAAAAAA
1 TTAAAAATTAATAAAAAA
48296049 TTATAAAA
1 TTA-AAAA
48296057 AGATCATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 9 0.38
18 11 0.46
19 4 0.17
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
TTAAAAATTAATAAAAAA
Found at i:48305639 original size:20 final size:20
Alignment explanation
Indices: 48305614--48305658 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
48305604 CAAGTTCACA
48305614 TAATTAAAAC-AAGACAC-AAT
1 TAATT-AAACTAAGAC-CTAAT
48305634 TAATTAAACTAAGACCTAAT
1 TAATTAAACTAAGACCTAAT
48305654 TAATT
1 TAATT
48305659 CGGTTTGGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.53, C:0.13, G:0.04, T:0.29
Consensus pattern (20 bp):
TAATTAAACTAAGACCTAAT
Found at i:48305906 original size:20 final size:21
Alignment explanation
Indices: 48305871--48305909 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
48305861 AATAATGACT
48305871 AAATTATATGGAGCTGAATCA
1 AAATTATATGGAGCTGAATCA
*
48305892 AAATT-TATTGAGCTGAAT
1 AAATTATATGGAGCTGAAT
48305910 TGGAGCTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (21 bp):
AAATTATATGGAGCTGAATCA
Found at i:48308042 original size:22 final size:21
Alignment explanation
Indices: 48307985--48308052 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 21
48307975 AGTATCCAGT
48307985 AACACGAATGGCTAAGAGCCATA
1 AACA-GAATGGCTAA-AGCCATA
* * *
48308008 AACAGGATAGCTATAAGCTATA
1 AACAGAATGGCTA-AAGCCATA
*
48308030 AATAGAATGGCTACAAGCCATA
1 AACAGAATGGCTA-AAGCCATA
48308052 A
1 A
48308053 GTACAGTAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
22 31 0.86
23 5 0.14
ACGTcount: A:0.46, C:0.18, G:0.19, T:0.18
Consensus pattern (21 bp):
AACAGAATGGCTAAAGCCATA
Found at i:48308105 original size:32 final size:32
Alignment explanation
Indices: 48308044--48308246 Score: 203
Period size: 32 Copynumber: 6.4 Consensus size: 32
48308034 GAATGGCTAC
* **
48308044 AAGCCATAAGT-ACAGTAATATGATTGGCACA
1 AAGCCATCAGTAACAGTAATATGACCGGCACA
* * **
48308075 AATCCATCAGTAGCAGTGGTATGACCGGCACA
1 AAGCCATCAGTAACAGTAATATGACCGGCACA
* * *
48308107 CAGCCATCAGTAACGGTAATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGACCGGCACA
* *
48308139 AAGCCATCAGTAAC-GATAATATGATCGGTACA
1 AAGCCATCAGTAACAG-TAATATGACCGGCACA
** *
48308171 AAGCCATCAGTAATGGTAATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGACCGGCACA
* * * * *
48308203 AAGCCATTAGTAACGGTAATATGATCGGTAAA
1 AAGCCATCAGTAACAGTAATATGACCGGCACA
48308235 AAGCCATCAGTA
1 AAGCCATCAGTA
48308247 GCATCGCAGC
Statistics
Matches: 146, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
31 10 0.07
32 135 0.92
33 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTAATATGACCGGCACA
Found at i:48308162 original size:64 final size:64
Alignment explanation
Indices: 48308044--48308246 Score: 257
Period size: 64 Copynumber: 3.2 Consensus size: 64
48308034 GAATGGCTAC
* * * * * ** * *
48308044 AAGCCATAAGT-ACAGTAATATGATTGGCACAAATCCATCAGTAGC-AGTGGTATGACCGGCACA
1 AAGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAACGA-TAATATGATCGGTACA
*
48308107 CAGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAACGATAATATGATCGGTACA
1 AAGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAACGATAATATGATCGGTACA
* * * *
48308171 AAGCCATCAGTAATGGTAATATGATCGGCACAAAGCCATTAGTAACGGTAATATGATCGGTAAA
1 AAGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAACGATAATATGATCGGTACA
48308235 AAGCCATCAGTA
1 AAGCCATCAGTA
48308247 GCATCGCAGC
Statistics
Matches: 123, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
63 9 0.07
64 113 0.92
65 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (64 bp):
AAGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAACGATAATATGATCGGTACA
Found at i:48308398 original size:24 final size:24
Alignment explanation
Indices: 48308364--48308445 Score: 119
Period size: 24 Copynumber: 3.4 Consensus size: 24
48308354 CCATGCTTAG
* *
48308364 AATCAGACATACAAATCACAGACA
1 AATCAGTCATACAAATCACAAACA
*
48308388 AATCAGTCATACCAATCACAAACA
1 AATCAGTCATACAAATCACAAACA
**
48308412 AATCAGTCATTTAAATCACAAACA
1 AATCAGTCATACAAATCACAAACA
48308436 AATCAGTCAT
1 AATCAGTCAT
48308446 TTACATCACG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.50, C:0.24, G:0.06, T:0.20
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAAACA
Found at i:48308446 original size:24 final size:24
Alignment explanation
Indices: 48308376--48308474 Score: 117
Period size: 24 Copynumber: 4.1 Consensus size: 24
48308366 TCAGACATAC
* **
48308376 AAATCACAGACAAATCAGTCATAC
1 AAATCACAAACAAATCAGTCATTT
*
48308400 CAATCACAAACAAATCAGTCATTT
1 AAATCACAAACAAATCAGTCATTT
48308424 AAATCACAAACAAATCAGTCATTT
1 AAATCACAAACAAATCAGTCATTT
* ** * *
48308448 ACATCACGGACATATCAATCATTT
1 AAATCACAAACAAATCAGTCATTT
48308472 AAA
1 AAA
48308475 CTCGAGGGGC
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 64 1.00
ACGTcount: A:0.47, C:0.23, G:0.06, T:0.23
Consensus pattern (24 bp):
AAATCACAAACAAATCAGTCATTT
Found at i:48308535 original size:27 final size:27
Alignment explanation
Indices: 48308491--48308719 Score: 158
Period size: 27 Copynumber: 8.5 Consensus size: 27
48308481 GGGCAAAATA
48308491 GTCA-TTTACCCT-CTAGGGGCATTACG
1 GTCATTTTACCCTAC-AGGGGCATTACG
* * * * ***
48308517 ATTATTTTACCTTACAGGGGTATTTTA
1 GTCATTTTACCCTACAGGGGCATTACG
* * * * * *
48308544 GTCATTTAACCTTA-TGAGGGTACTATG
1 GTCATTTTACCCTACAG-GGGCATTACG
* *
48308571 GTCATTTTACCCTATAGAGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
** ** * *
48308598 GTCATTTTACCCTATGGGGGTTTTTCA
1 GTCATTTTACCCTACAGGGGCATTACG
* * * *
48308625 ATTATTTTACCCTACAGGGGTATTTCG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
48308652 GTCATTTTACCTTACAGAGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
48308679 ATCATTTTACCCTACGGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
48308706 GTCATTTTACCCTA
1 GTCATTTTACCCTA
48308720 TGGGAGTTTT
Statistics
Matches: 155, Mismatches: 44, Indels: 7
0.75 0.21 0.03
Matches are distributed among these distances:
26 3 0.02
27 150 0.97
28 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:48308618 original size:81 final size:81
Alignment explanation
Indices: 48308491--48308698 Score: 226
Period size: 81 Copynumber: 2.6 Consensus size: 81
48308481 GGGCAAAATA
* * * * * *
48308491 GTCA-TTTACCCTCTAGGGGCATTACGATTATTTTACCTTACAGGGGTATTTT-AGTCATTTAAC
1 GTCATTTTACCCTATAGAGGCATTACGATCATTTTACCCTACGGGGGT-TTTTCAATCATTTAAC
* *
48308554 CTTA-TGAGGGTACTAT-G
65 CCTACAG-GGGTA-TATCG
* * * *
48308571 GTCATTTTACCCTATAGAGGCATTACGGTCATTTTACCCTATGGGGGTTTTTCAATTATTTTACC
1 GTCATTTTACCCTATAGAGGCATTACGATCATTTTACCCTACGGGGGTTTTTCAATCATTTAACC
*
48308636 CTACAGGGGTATTTCG
66 CTACAGGGGTATATCG
* *
48308652 GTCATTTTACCTTACAGAGGCATTACGATCATTTTACCCTACGGGGG
1 GTCATTTTACCCTATAGAGGCATTACGATCATTTTACCCTACGGGGG
48308699 CATTACGGTC
Statistics
Matches: 107, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
80 10 0.09
81 96 0.90
82 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (81 bp):
GTCATTTTACCCTATAGAGGCATTACGATCATTTTACCCTACGGGGGTTTTTCAATCATTTAACC
CTACAGGGGTATATCG
Found at i:48308632 original size:54 final size:54
Alignment explanation
Indices: 48308572--48308770 Score: 209
Period size: 54 Copynumber: 3.7 Consensus size: 54
48308562 GGTACTATGG
* *
48308572 TCATTTTACCCTATAGAGGCATTACGGTCATTTTACCCTATGGGGGTTTTTCAA
1 TCATTTTACCCTACAGGGGCATTACGGTCATTTTACCCTATGGGGGTTTTTCAA
* * * * ** * ** * *
48308626 TTATTTTACCCTACAGGGGTATTTCGGTCATTTTACCTTACAGAGGCATTACGA
1 TCATTTTACCCTACAGGGGCATTACGGTCATTTTACCCTATGGGGGTTTTTCAA
* * **
48308680 TCATTTTACCCTACGGGGGCATTACGGTCATTTTACCCTATGGGAGTTTTTTTTA
1 TCATTTTACCCTACAGGGGCATTACGGTCATTTTACCCTATGGG-GGTTTTTCAA
* * *
48308735 TCATTTTACCCTATATGGGTATTACGGTCATTTTAC
1 TCATTTTACCCTACAGGGGCATTACGGTCATTTTAC
48308771 AAATATTGGG
Statistics
Matches: 113, Mismatches: 31, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
54 77 0.68
55 36 0.32
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (54 bp):
TCATTTTACCCTACAGGGGCATTACGGTCATTTTACCCTATGGGGGTTTTTCAA
Found at i:48308641 original size:108 final size:109
Alignment explanation
Indices: 48308517--48308767 Score: 299
Period size: 108 Copynumber: 2.3 Consensus size: 109
48308507 GGGCATTACG
* * * * * *
48308517 ATTATTTTACCTTACAGGGGTATTTTAGTCATTTAACCTTA-TGAGGGTACTATGGTCATTTTAC
1 ATTATTTTACCCTACAGGGGTATTTCAGTCATTTAACCTTACAGA-GGCACTACGATCATTTTAC
*
48308581 CCTATAGAGGCATTACGGTCATTTTACCCTATGGG-GGTTTTTCA
65 CCTACAGAGGCATTACGGTCATTTTACCCTATGGGAGGTTTTTCA
* * *
48308625 ATTATTTTACCCTACAGGGGTATTTCGGTCATTTTACCTTACAGAGGCATTACGATCATTTTACC
1 ATTATTTTACCCTACAGGGGTATTTCAGTCATTTAACCTTACAGAGGCACTACGATCATTTTACC
* * * **
48308690 CTACGGGGGCATTACGGTCATTTTACCCTATGGGAGTTTTTTTT
66 CTACAGAGGCATTACGGTCATTTTACCCTATGGGAGGTTTTTCA
* * * * *
48308734 ATCATTTTACCCTATATGGGTATTACGGTCATTT
1 ATTATTTTACCCTACAGGGGTATTTCAGTCATTT
48308768 TACAAATATT
Statistics
Matches: 122, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
108 84 0.69
109 38 0.31
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.41
Consensus pattern (109 bp):
ATTATTTTACCCTACAGGGGTATTTCAGTCATTTAACCTTACAGAGGCACTACGATCATTTTACC
CTACAGAGGCATTACGGTCATTTTACCCTATGGGAGGTTTTTCA
Found at i:48308713 original size:81 final size:81
Alignment explanation
Indices: 48308570--48308719 Score: 210
Period size: 81 Copynumber: 1.9 Consensus size: 81
48308560 AGGGTACTAT
* * * ** * *
48308570 GGTCATTTTACCCTATAGAGGCATTACGGTCATTTTACCCTATGGGGGTTTTTCAATTATTTTAC
1 GGTCATTTTACCCTACAGAGGCATTACGATCATTTTACCCTACGGGGGCATTACAATCATTTTAC
48308635 CCTACAGGGGTATTTC
66 CCTACAGGGGTATTTC
* **
48308651 GGTCATTTTACCTTACAGAGGCATTACGATCATTTTACCCTACGGGGGCATTACGGTCATTTTAC
1 GGTCATTTTACCCTACAGAGGCATTACGATCATTTTACCCTACGGGGGCATTACAATCATTTTAC
48308716 CCTA
66 CCTA
48308720 TGGGAGTTTT
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 59 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (81 bp):
GGTCATTTTACCCTACAGAGGCATTACGATCATTTTACCCTACGGGGGCATTACAATCATTTTAC
CCTACAGGGGTATTTC
Found at i:48311094 original size:32 final size:33
Alignment explanation
Indices: 48311058--48311133 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 33
48311048 GAGCCCTTTT
*
48311058 CAGTAACAGAACAATGT-GGCTTTAGCCCAAAA
1 CAGTAACAGAACAATGTGGGCCTTAGCCCAAAA
* * * **
48311090 CAGTAAAAGTACAGTGTGGGCCTTAGCCCATTA
1 CAGTAACAGAACAATGTGGGCCTTAGCCCAAAA
*
48311123 CAGTATCAGAA
1 CAGTAACAGAA
48311134 TTAGAAATAG
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
32 14 0.41
33 20 0.59
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (33 bp):
CAGTAACAGAACAATGTGGGCCTTAGCCCAAAA
Found at i:48311126 original size:33 final size:32
Alignment explanation
Indices: 48311042--48311127 Score: 82
Period size: 32 Copynumber: 2.7 Consensus size: 32
48311032 AGTAAAAGTC
* * * *
48311042 TGGCCTGAGCCCTTTTCAGTAACAGAACAATG
1 TGGCCTTAGCCCATTACAGTAAAAGAACAATG
* ** * *
48311074 TGGCTTTAGCCCAAAACAGTAAAAGTACAGTG
1 TGGCCTTAGCCCATTACAGTAAAAGAACAATG
48311106 TGGGCCTTAGCCCATTACAGTA
1 T-GGCCTTAGCCCATTACAGTA
48311128 TCAGAATTAG
Statistics
Matches: 41, Mismatches: 12, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
32 24 0.59
33 17 0.41
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.24
Consensus pattern (32 bp):
TGGCCTTAGCCCATTACAGTAAAAGAACAATG
Found at i:48311189 original size:46 final size:47
Alignment explanation
Indices: 48311099--48311191 Score: 109
Period size: 46 Copynumber: 2.0 Consensus size: 47
48311089 ACAGTAAAAG
* * * *
48311099 TACAGTGTGGGCCTTAGCCCATTACAGTATCAGAATTAGAAATAGAA
1 TACAGTGTGGACCTAAGCCCAATACAGTATCAGAATCAGAAATAGAA
* *
48311146 TACA-TGTGGACCTAAGCCCAATACAGTGA-CATAATCAGTAATAGAA
1 TACAGTGTGGACCTAAGCCCAATACAGT-ATCAGAATCAGAAATAGAA
48311192 ATGCAACAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
46 34 0.87
47 5 0.13
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (47 bp):
TACAGTGTGGACCTAAGCCCAATACAGTATCAGAATCAGAAATAGAA
Found at i:48311405 original size:22 final size:22
Alignment explanation
Indices: 48311342--48311405 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
48311332 CAGCAAAGCT
* *
48311342 GCCAGAAACCAGAATGGTTAAGA
1 GCCATAAA-CAGAATGGCTAAGA
* *
48311365 GCCATAAACAGGATAGCTATA-A
1 GCCATAAACAGAATGGCTA-AGA
*
48311387 GCTATAAACAGAATGGCTA
1 GCCATAAACAGAATGGCTA
48311406 CAACCCATAA
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
22 25 0.76
23 8 0.24
ACGTcount: A:0.44, C:0.17, G:0.22, T:0.17
Consensus pattern (22 bp):
GCCATAAACAGAATGGCTAAGA
Found at i:48311415 original size:22 final size:22
Alignment explanation
Indices: 48311366--48311415 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
48311356 TGGTTAAGAG
* * *
48311366 CCATAAACAGGATAGCTATAAG
1 CCATAAACAGAATAGCTACAAC
* *
48311388 CTATAAACAGAATGGCTACAAC
1 CCATAAACAGAATAGCTACAAC
48311410 CCATAA
1 CCATAA
48311416 GTACGGTAAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.46, C:0.22, G:0.14, T:0.18
Consensus pattern (22 bp):
CCATAAACAGAATAGCTACAAC
Found at i:48311475 original size:32 final size:32
Alignment explanation
Indices: 48311410--48311545 Score: 150
Period size: 32 Copynumber: 4.3 Consensus size: 32
48311400 TGGCTACAAC
* * *
48311410 CCATAAGT-ACGGTAATTTGATTGGCACAAAG
1 CCATAAGTAACAGTAATATGATCGGCACAAAG
* * *
48311441 CCATAAGTAGCAGTGATATGATCGGCACACAG
1 CCATAAGTAACAGTAATATGATCGGCACAAAG
* *
48311473 CCATCATTAACAGTAATATGATCGGCACAAAG
1 CCATAAGTAACAGTAATATGATCGGCACAAAG
* *
48311505 CCATCAA-TAACAGTAATATGACCAGCACAAAG
1 CCAT-AAGTAACAGTAATATGATCGGCACAAAG
*
48311537 CCATCAGTA
1 CCATAAGTA
48311546 GCATCGCCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
31 9 0.10
32 77 0.89
33 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (32 bp):
CCATAAGTAACAGTAATATGATCGGCACAAAG
Done.