Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 167 of 226
Found at i:51446402 original size:67 final size:69
Alignment explanation
Indices: 51446283--51446450 Score: 184
Period size: 67 Copynumber: 2.5 Consensus size: 69
51446273 CAAAAATTGA
* * **
51446283 AAGGCTTAACTCACTTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAATACCTCGGCGTG
1 AAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTAAAACATAAACTAAAATACCTCAACGTG
51446347 -CCC
66 TCCC
* * ** *
51446350 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAA-A-AAATTAAAAATACCTCAACGT
1 AAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTAAAACATAAACT-AAAATACCTCAACGT
**
51446413 GTCTT
65 GTCCC
51446418 AAGGCTCAACTCA-TCTCTCGCAATATGAGTTGA
1 AAGGCTCAACTCACT-TCTCGCAATATGAGTTGA
51446451 CTTTCCTTGG
Statistics
Matches: 85, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
66 4 0.05
67 43 0.51
68 38 0.45
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (69 bp):
AAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTAAAACATAAACTAAAATACCTCAACGTG
TCCC
Found at i:51454440 original size:14 final size:15
Alignment explanation
Indices: 51454421--51454450 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
51454411 AGTATGGGAT
51454421 ATGCATGAATG-ATG
1 ATGCATGAATGCATG
51454435 ATGCATGAATGCATG
1 ATGCATGAATGCATG
51454450 A
1 A
51454451 ATGTCAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.37, C:0.10, G:0.27, T:0.27
Consensus pattern (15 bp):
ATGCATGAATGCATG
Found at i:51454448 original size:8 final size:8
Alignment explanation
Indices: 51454421--51454453 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
51454411 AGTATGGGAT
51454421 ATGCATGA
1 ATGCATGA
51454429 ATG-ATG-
1 ATGCATGA
51454435 ATGCATGA
1 ATGCATGA
51454443 ATGCATGA
1 ATGCATGA
51454451 ATG
1 ATG
51454454 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
6 3 0.13
7 6 0.26
8 14 0.61
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.27
Consensus pattern (8 bp):
ATGCATGA
Found at i:51458534 original size:32 final size:32
Alignment explanation
Indices: 51458498--51458558 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
51458488 GTACATACGT
51458498 AATATATAAATACATATATAAT-ATAATGTTAA
1 AATATATAAATA-ATATATAATAATAATGTTAA
* * *
51458530 AATATTTACATAATATATCATAATAATGT
1 AATATATAAATAATATATAATAATAATGT
51458559 GGAAAACGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 8 0.32
32 17 0.68
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.39
Consensus pattern (32 bp):
AATATATAAATAATATATAATAATAATGTTAA
Found at i:51459398 original size:11 final size:12
Alignment explanation
Indices: 51459382--51459417 Score: 58
Period size: 11 Copynumber: 3.2 Consensus size: 12
51459372 GAAAAAAAAA
51459382 GAAGAGAG-AGG
1 GAAGAGAGAAGG
51459393 GAAGAGAGAAGG
1 GAAGAGAGAAGG
51459405 G-AGAGAGAAGG
1 GAAGAGAGAAGG
51459416 GA
1 GA
51459418 GGGGGGAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:51459548 original size:17 final size:17
Alignment explanation
Indices: 51459522--51459556 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
51459512 AAGGTAAAAA
*
51459522 TTTATATTTTTTTATTT
1 TTTATATTTTCTTATTT
*
51459539 TTTATTTTTTCTTATTT
1 TTTATATTTTCTTATTT
51459556 T
1 T
51459557 CTTTTATGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTATATTTTCTTATTT
Found at i:51460246 original size:13 final size:13
Alignment explanation
Indices: 51460230--51460255 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51460220 TTTATTTGGT
51460230 TTATTGGGTTTTG
1 TTATTGGGTTTTG
51460243 TTATTGGGTTTTG
1 TTATTGGGTTTTG
51460256 GGGGTGGCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TTATTGGGTTTTG
Found at i:51461276 original size:13 final size:15
Alignment explanation
Indices: 51461245--51461273 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
51461235 ACTTTTCCTT
51461245 TTAGCAAATATTATA
1 TTAGCAAATATTATA
51461260 TTAGCAAATATTAT
1 TTAGCAAATATTAT
51461274 TAGTATGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (15 bp):
TTAGCAAATATTATA
Found at i:51464979 original size:17 final size:17
Alignment explanation
Indices: 51464957--51464989 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
51464947 TAATTATACT
51464957 TGTTAATGCAATTACAG
1 TGTTAATGCAATTACAG
*
51464974 TGTTAATGCTATTACA
1 TGTTAATGCAATTACA
51464990 TATATTGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.39
Consensus pattern (17 bp):
TGTTAATGCAATTACAG
Found at i:51465441 original size:6 final size:6
Alignment explanation
Indices: 51465430--51465465 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
51465420 ATTATAATAA
*
51465430 TTAATT TTAATT TTAATT TTAATT TTAATG TTAATT
1 TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT
51465466 ATTTGAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (6 bp):
TTAATT
Found at i:51466851 original size:25 final size:24
Alignment explanation
Indices: 51466823--51466884 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 24
51466813 ACGAATACTC
* *
51466823 AGCTCGTATGAGCTTATTGTTATTT
1 AGCTCGTATGAGCTTACTGTT-TAT
* *
51466848 AGCTCGGAAGAGCTTACTGTTTAT
1 AGCTCGTATGAGCTTACTGTTTAT
51466872 AGCTCGTATGAGC
1 AGCTCGTATGAGC
51466885 ATACATGTGC
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
24 13 0.42
25 18 0.58
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.37
Consensus pattern (24 bp):
AGCTCGTATGAGCTTACTGTTTAT
Found at i:51469101 original size:58 final size:58
Alignment explanation
Indices: 51469006--51469122 Score: 216
Period size: 58 Copynumber: 2.0 Consensus size: 58
51468996 AAGAAGATGG
*
51469006 TCCCTTAACCCTTTTTGTTTTCCTTATTTTATTACTTTAACATTTTTATTAATAAATT
1 TCCCCTAACCCTTTTTGTTTTCCTTATTTTATTACTTTAACATTTTTATTAATAAATT
*
51469064 TCCCCTAACCCTTTTTGTTTTTCTTATTTTATTACTTTAACATTTTTATTAATAAATT
1 TCCCCTAACCCTTTTTGTTTTCCTTATTTTATTACTTTAACATTTTTATTAATAAATT
51469122 T
1 T
51469123 ACTACAAAAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.24, C:0.17, G:0.02, T:0.57
Consensus pattern (58 bp):
TCCCCTAACCCTTTTTGTTTTCCTTATTTTATTACTTTAACATTTTTATTAATAAATT
Found at i:51471765 original size:22 final size:20
Alignment explanation
Indices: 51471729--51471787 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 20
51471719 GGCCCGTCCC
51471729 ATTT-TTTTAATAAATACCAAAA
1 ATTTATTTTAA-AAATA--AAAA
51471751 ATTTATTTTAAAAATTAAAAA
1 ATTTATTTTAAAAA-TAAAAA
**
51471772 AAGTATTTTAAAAATA
1 ATTTATTTTAAAAATA
51471788 TTTTAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 2 0.06
21 16 0.48
22 7 0.21
23 8 0.24
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (20 bp):
ATTTATTTTAAAAATAAAAA
Found at i:51471789 original size:11 final size:12
Alignment explanation
Indices: 51471769--51471835 Score: 64
Period size: 12 Copynumber: 5.3 Consensus size: 12
51471759 TAAAAATTAA
51471769 AAAAAGTATTTT
1 AAAAAGTATTTT
51471781 AAAAA-TATTTT
1 AAAAAGTATTTT
** *
51471792 AAAATTAAAAAAATTT
1 --AA--AAAGTATTTT
51471808 AAAAAGTATTTT
1 AAAAAGTATTTT
51471820 AAAAAGTATTTT
1 AAAAAGTATTTT
51471832 AAAA
1 AAAA
51471836 TTTAAAAAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
11 6 0.13
12 28 0.62
13 2 0.04
14 2 0.04
15 3 0.07
16 4 0.09
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.37
Consensus pattern (12 bp):
AAAAAGTATTTT
Found at i:51471801 original size:17 final size:18
Alignment explanation
Indices: 51471778--51471865 Score: 65
Period size: 17 Copynumber: 4.8 Consensus size: 18
51471768 AAAAAAGTAT
*
51471778 TTTAAAAATATTTTAAAA
1 TTTAAAAATATTTAAAAA
*
51471796 -TTAAAAAAATTTAAAAAGTA
1 TTTAAAAATATTT-AAAA--A
*
51471816 TTTTAAAAAGTATTTTAAAA
1 -TTTAAAAA-TATTTAAAAA
51471836 TTTAAAAA-ATTTAAAAA
1 TTTAAAAATATTTAAAAA
* *
51471853 -ATAAATATATTTA
1 TTTAAAAATATTTA
51471866 TTATATCGGG
Statistics
Matches: 56, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
16 5 0.09
17 24 0.43
18 3 0.05
19 8 0.14
20 2 0.04
22 10 0.18
23 4 0.07
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (18 bp):
TTTAAAAATATTTAAAAA
Found at i:51471812 original size:40 final size:41
Alignment explanation
Indices: 51471760--51471853 Score: 156
Period size: 40 Copynumber: 2.3 Consensus size: 41
51471750 AATTTATTTT
*
51471760 AAAAATTAAAAAAAGTATTTTAAAAA-TATTTTAAAATTAA
1 AAAAATTTAAAAAAGTATTTTAAAAAGTATTTTAAAATTAA
*
51471800 AAAAATTT-AAAAAGTATTTTAAAAAGTATTTTAAAATTTA
1 AAAAATTTAAAAAAGTATTTTAAAAAGTATTTTAAAATTAA
51471840 AAAAATTTAAAAAA
1 AAAAATTTAAAAAA
51471854 TAAATATATT
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
39 17 0.34
40 28 0.56
41 5 0.10
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (41 bp):
AAAAATTTAAAAAAGTATTTTAAAAAGTATTTTAAAATTAA
Found at i:51471854 original size:9 final size:9
Alignment explanation
Indices: 51471778--51471854 Score: 59
Period size: 9 Copynumber: 8.1 Consensus size: 9
51471768 AAAAAAGTAT
51471778 TTTAAAAATA
1 TTTAAAAA-A
*
51471788 TTT-TAAAA
1 TTTAAAAAA
*
51471796 TTAAAAAAA
1 TTTAAAAAA
51471805 TTTAAAAAGTA
1 TTTAAAAA--A
51471816 TTTTAAAAAGTA
1 -TTTAAAAA--A
*
51471828 TTT-TAAAA
1 TTTAAAAAA
51471836 TTTAAAAAA
1 TTTAAAAAA
51471845 TTTAAAAAA
1 TTTAAAAAA
51471854 T
1 T
51471855 AAATATATTT
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
8 7 0.12
9 28 0.50
10 6 0.11
11 4 0.07
12 11 0.20
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:51484413 original size:3 final size:3
Alignment explanation
Indices: 51484405--51484452 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
51484395 CAAATGCTCA
51484405 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
51484453 GAAGGAAGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:51484789 original size:41 final size:40
Alignment explanation
Indices: 51484680--51484962 Score: 194
Period size: 41 Copynumber: 6.8 Consensus size: 40
51484670 ATATTTTTGG
* * * *
51484680 GCCTTTAGCGGCGTTTTTTACAAATCGCCGCTAATTCTC-C
1 GCCTTTAGCGGCGTTTTTTA-TAAGCGCCGCTAATGCTCTA
* **
51484720 GACCTTTTAGCGGCGATTTTCGTGAAGCGCCGCTAATGCTCTA
1 G-CC-TTTAGCGGCGTTTTTTAT-AAGCGCCGCTAATGCTCTA
51484763 GCCTTTAGCGGCGTTTTCTTATAAGCGCCGCTAATGCTCTA
1 GCCTTTAGCGGCGTTTT-TTATAAGCGCCGCTAATGCTCTA
* * *
51484804 GCCTTTAGCGGCGTTTTTTAATAAGCGCCACTAATGATCTG
1 GCCTTTAGCGGCGTTTTTT-ATAAGCGCCGCTAATGCTCTA
* * ** * * * *
51484845 GTCATTAGCGGCGTCTTTGAAAAAGCGCCGGTAATACTGT-
1 GCCTTTAGCGGCGT-TTTTTATAAGCGCCGCTAATGCTCTA
* * * * * *
51484885 GTCATTTAGCGGCGCTTGTTTAAAAACGCCGCTATTGTTCGT-
1 G-CCTTTAGCGGCG-TTTTTTATAAGCGCCGCTAATGCTC-TA
* * *
51484927 TCTTTTAGCGGCGTTTTTTGTGAAAGCGCCGCTAAT
1 GCCTTTAGCGGCGTTTTTTAT--AAGCGCCGCTAAT
51484963 AATAAAATCT
Statistics
Matches: 189, Mismatches: 42, Indels: 22
0.75 0.17 0.09
Matches are distributed among these distances:
40 9 0.05
41 130 0.69
42 49 0.26
43 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (40 bp):
GCCTTTAGCGGCGTTTTTTATAAGCGCCGCTAATGCTCTA
Found at i:51489757 original size:43 final size:42
Alignment explanation
Indices: 51489655--51489882 Score: 257
Period size: 43 Copynumber: 5.4 Consensus size: 42
51489645 GTTTGTAAAA
* * *
51489655 TAAGCGCCACTAAAGAACACT-A-CTGTTAGCAGCGTTTTTGACC
1 TAAGCGCCGCTAAAGAACA-TGATCT-TTAGCGGCGTTTTT-TCC
* *
51489698 -AAGCGCCGCTATAGAACATTA-CTTTTAGCGGCGTTTTCTTCC
1 TAAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTT-TTCC
51489740 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTTCC
* * * *
51489783 CAAGCGCCACTAGAGAACATGATCTTTAGCGGCATTTTTTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCC
**
51489825 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTTG
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTTCC
*
51489868 TAAGCGCCGCAAAAG
1 TAAGCGCCGCTAAAG
51489883 TTAGCGACGT
Statistics
Matches: 161, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
41 1 0.01
42 70 0.43
43 85 0.53
44 5 0.03
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (42 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCC
Found at i:51489875 original size:85 final size:86
Alignment explanation
Indices: 51489655--51489865 Score: 288
Period size: 85 Copynumber: 2.5 Consensus size: 86
51489645 GTTTGTAAAA
* * ** * *
51489655 TAAGCGCCACTAAAGAACACT-A-CTGTTAGCAGCG-TTTTTGACCAAGCGCCGCTATAGAACAT
1 TAAGCGCCGCTAAAGAACA-TGATCT-TTAGCGGCGTTTTTTTCCCAAGCGCCACTAGAGAACAT
* *
51489717 TACTTTTAGCGGCGTTTTCTTCC
64 GACTTTTAGCGGCATTTTCTTCC
51489740 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCCAAGCGCCACTAGAGAACATGA
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCCAAGCGCCACTAGAGAACATGA
51489805 -TCTTTAGCGGCATTTT-TTCC
66 CT-TTTAGCGGCATTTTCTTCC
51489825 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTT
51489866 TGTAAGCGCC
Statistics
Matches: 114, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
84 1 0.01
85 73 0.64
86 40 0.35
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (86 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCCAAGCGCCACTAGAGAACATGA
CTTTTAGCGGCATTTTCTTCC
Found at i:51494254 original size:22 final size:22
Alignment explanation
Indices: 51494229--51494288 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 22
51494219 ATTTGAAATG
51494229 TTTTATAATATTATTTTTTAAA
1 TTTTATAATATTATTTTTTAAA
51494251 TTTT-TAA-ATATATATTTTTAAA
1 TTTTATAATAT-TAT-TTTTTAAA
*
51494273 ATTTA-AATATT-TTTTT
1 TTTTATAATATTATTTTT
51494289 AATAATATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
20 6 0.18
21 7 0.21
22 18 0.55
23 2 0.06
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTTATAATATTATTTTTTAAA
Found at i:51494266 original size:23 final size:23
Alignment explanation
Indices: 51494224--51494290 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 23
51494214 AAAAAATTTG
*
51494224 AAATGTTTTATAATATTATTTTTT
1 AAAT-TTTTATAATATTATTTTTA
51494248 AAATTTTTA-AATATATATTTTTA
1 AAATTTTTATAATAT-TATTTTTA
51494271 AAA--TTTA-AATATT-TTTTTA
1 AAATTTTTATAATATTATTTTTA
51494290 A
1 A
51494291 TAATATAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
19 7 0.17
20 1 0.02
21 9 0.22
22 5 0.12
23 15 0.37
24 4 0.10
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.58
Consensus pattern (23 bp):
AAATTTTTATAATATTATTTTTA
Found at i:51494277 original size:21 final size:20
Alignment explanation
Indices: 51494230--51494304 Score: 71
Period size: 21 Copynumber: 3.5 Consensus size: 20
51494220 TTTGAAATGT
*
51494230 TTTATAATATTATTTTTTAAATT
1 TTTA-AATATTA-TTTTTAAA-A
51494253 TTTAAATATATATTTTTAAAA
1 TTTAAATAT-TATTTTTAAAA
51494274 TTTAAATATT-TTTTTAATAA
1 TTTAAATATTATTTTTAA-AA
*
51494294 TATAAAATATT
1 T-TTAAATATT
51494305 TAAATATTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.15
20 4 0.09
21 17 0.36
22 13 0.28
23 6 0.13
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTAAATATTATTTTTAAAA
Found at i:51494305 original size:21 final size:19
Alignment explanation
Indices: 51494254--51494305 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
51494244 TTTTAAATTT
*
51494254 TTAAATATATATTTTTAAAA
1 TTAAA-ATATTTTTTTAAAA
*
51494274 TTTAAATATTTTTTTAATAA
1 TTAAAATATTTTTTTAA-AA
51494294 TATAAAATATTT
1 T-TAAAATATTT
51494306 AAATATTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 11 0.41
20 7 0.26
21 9 0.33
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TTAAAATATTTTTTTAAAA
Found at i:51494389 original size:18 final size:19
Alignment explanation
Indices: 51494366--51494402 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
51494356 TTTAAATGTA
51494366 AATTTTAAATAT-CTTTTT
1 AATTTTAAATATACTTTTT
*
51494384 AATTTTACATATACTTTTT
1 AATTTTAAATATACTTTTT
51494403 TAAATTATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.59
Consensus pattern (19 bp):
AATTTTAAATATACTTTTT
Found at i:51494581 original size:20 final size:21
Alignment explanation
Indices: 51494557--51494611 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
51494547 ACTTTATTTA
*
51494557 AAAAATATATATTAAAAAGTT
1 AAAAATATATATTAAAAAATT
* *
51494578 -AAAATTTAAATTAAAAAATT
1 AAAAATATATATTAAAAAATT
51494598 AAAAATATATATTA
1 AAAAATATATATTA
51494612 TAACTGGTCA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (21 bp):
AAAAATATATATTAAAAAATT
Found at i:51495880 original size:90 final size:90
Alignment explanation
Indices: 51495553--51495860 Score: 447
Period size: 90 Copynumber: 3.4 Consensus size: 90
51495543 ATAAAATATA
* * ** *
51495553 AAATTCAAACAAGA-ATAATACACACTAAATTAAATTTAAACACCCAACAAACTACAAACAGATG
1 AAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCCAACAAATTACAAACAGATG
51495617 GGTAAAATTAATAAACGAAAATTTT
66 GGTAAAATTAATAAACGAAAATTTT
*
51495642 AAATTCAAACTACATATAATACGGGCTAAATTAAATTTAAACACCCAACAAATTACAAACAGATG
1 AAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCCAACAAATTACAAACAGATG
* * ** *
51495707 GATAAAATTAGTGTACGAAATTTTT
66 GGTAAAATTAATAAACGAAAATTTT
* * **
51495732 AAATTCAAACTATATATAACACAAACTAAATTAAATTTAAACACCCAACAAATTACAAACAGATG
1 AAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCCAACAAATTACAAACAGATG
*
51495797 GGTAAAATTAATACACGAAAATTTT
66 GGTAAAATTAATAAACGAAAATTTT
* *
51495822 AAATTCAATCTACATATAATACGGACTAGATTAAATTTA
1 AAATTCAAACTACATATAATACGGACTAAATTAAATTTA
51495861 TAAATACAAA
Statistics
Matches: 191, Mismatches: 27, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
89 12 0.06
90 179 0.94
ACGTcount: A:0.51, C:0.15, G:0.07, T:0.26
Consensus pattern (90 bp):
AAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCCAACAAATTACAAACAGATG
GGTAAAATTAATAAACGAAAATTTT
Found at i:51498489 original size:18 final size:18
Alignment explanation
Indices: 51498458--51498507 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
51498448 ATAAGAAAAC
*
51498458 ATTTTGAAATTGAATAATG
1 ATTTGGAAA-TGAATAATG
*
51498477 ATTTGTAAATGAATAATG
1 ATTTGGAAATGAATAATG
*
51498495 TTTTGGAAATGAA
1 ATTTGGAAATGAA
51498508 CGACACGATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
18 20 0.74
19 7 0.26
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.40
Consensus pattern (18 bp):
ATTTGGAAATGAATAATG
Found at i:51499371 original size:112 final size:111
Alignment explanation
Indices: 51499235--51499453 Score: 298
Period size: 112 Copynumber: 2.0 Consensus size: 111
51499225 CCGAAAAAGG
* * *
51499235 TGGTGTCAGCCATCAGTGTTCCAAAATTAAAAAAAAAT-TG-CATTGGGAGTCAAAAAATGTACT
1 TGGTGTCAGCCATCAGTGTCCCAAAA-TAAAAAAAAATGTGTC-TTGGGAGCCAAAAAATGTACC
** * *
51499298 TGGTGTTGGCCATCTACTTGCCAGCACCCAAATTTTTTTTAAATGACAC
64 TGGTGCCGGCCATCTACTGGCCAGCAACCAAA-TTTTTTTAAATGACAC
* *
51499347 TGGTGTCAGCCATCAGTGTCCCAAAATAAAAAAAAATGTGTCTTGGGAGCCGAAATATGTACCTG
1 TGGTGTCAGCCATCAGTGTCCCAAAATAAAAAAAAATGTGTCTTGGGAGCCAAAAAATGTACCTG
* *
51499412 GTGCCGGCCATCTACTGGCGAGCAACTAAATTTTTTTAAATG
66 GTGCCGGCCATCTACTGGCCAGCAACCAAATTTTTTTAAATG
51499454 TCTCTAGTGC
Statistics
Matches: 94, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
111 23 0.24
112 70 0.74
113 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (111 bp):
TGGTGTCAGCCATCAGTGTCCCAAAATAAAAAAAAATGTGTCTTGGGAGCCAAAAAATGTACCTG
GTGCCGGCCATCTACTGGCCAGCAACCAAATTTTTTTAAATGACAC
Found at i:51502402 original size:30 final size:30
Alignment explanation
Indices: 51502360--51502456 Score: 108
Period size: 30 Copynumber: 3.2 Consensus size: 30
51502350 GTCACAAAGT
* *
51502360 AGTTCATGTCACCCGTATATGGGCGGTTCG
1 AGTTCATATCACCCGTACATGGGCGGTTCG
* * *
51502390 ACTTCATATCA-CCTTGACATGGGCAGTTCG
1 AGTTCATATCACCCGT-ACATGGGCGGTTCG
*
51502420 AGTTCATATCACCCAG-ACATAGGCGGTTCG
1 AGTTCATATCACCC-GTACATGGGCGGTTCG
51502450 AGTTCAT
1 AGTTCAT
51502457 TTCTCTTCAC
Statistics
Matches: 55, Mismatches: 9, Indels: 6
0.79 0.13 0.09
Matches are distributed among these distances:
29 3 0.05
30 50 0.91
31 2 0.04
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.29
Consensus pattern (30 bp):
AGTTCATATCACCCGTACATGGGCGGTTCG
Found at i:51505401 original size:40 final size:40
Alignment explanation
Indices: 51505357--51505437 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
51505347 GATCTTCCTT
*
51505357 TTCATTTATGCTAGCTTCACATTTTTTTGAAACGCAAACC
1 TTCATTTATGCTAGCTTCACATCTTTTTGAAACGCAAACC
51505397 TTCATTTATGCTAGCTTCACATCTTTTTGAAACGCAAACC
1 TTCATTTATGCTAGCTTCACATCTTTTTGAAACGCAAACC
51505437 T
1 T
51505438 ACTCTTTTCC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (40 bp):
TTCATTTATGCTAGCTTCACATCTTTTTGAAACGCAAACC
Found at i:51505733 original size:8 final size:8
Alignment explanation
Indices: 51505722--51505750 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
51505712 ATAAAACATT
51505722 AAATTTTA
1 AAATTTTA
51505730 AAATTTTA
1 AAATTTTA
51505738 AAATTTTA
1 AAATTTTA
51505746 AAATT
1 AAATT
51505751 AATTTAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
AAATTTTA
Found at i:51505752 original size:29 final size:29
Alignment explanation
Indices: 51505713--51505857 Score: 95
Period size: 29 Copynumber: 4.9 Consensus size: 29
51505703 CTCCACCAAA
51505713 TAAAACATTAAATTTTAAAATTTTAAAAT-T
1 TAAAA-ATTAAA-TTTAAAATTTTAAAATAT
* *
51505743 TTAAAATT-AATTTAAAAATGTTTAAATATCT
1 TAAAAATTAAATTT-AAAAT-TTTAAA-ATAT
* *
51505774 TAAAAATT-AA-TTAAAAATTAAAAAT-T
1 TAAAAATTAAATTTAAAATTTTAAAATAT
* *
51505800 ATAAAAATTATATTTAAAA-TTAAAAATAT
1 -TAAAAATTAAATTTAAAATTTTAAAATAT
* *
51505829 TTAAAATATACATTTAAAATATTATAAAA
1 TAAAAAT-TAAATTTAAAAT-TT-TAAAA
51505858 CAAATAATAA
Statistics
Matches: 95, Mismatches: 8, Indels: 22
0.76 0.06 0.18
Matches are distributed among these distances:
26 1 0.01
27 13 0.14
28 27 0.28
29 30 0.32
30 8 0.08
31 12 0.13
32 4 0.04
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (29 bp):
TAAAAATTAAATTTAAAATTTTAAAATAT
Found at i:51505788 original size:30 final size:28
Alignment explanation
Indices: 51505713--51505857 Score: 109
Period size: 28 Copynumber: 4.9 Consensus size: 28
51505703 CTCCACCAAA
*
51505713 TAAAACATTAAATTTTAAAATTTTAAAATT
1 TAAAA-ATT-AATTTAAAAATTTTAAAATT
*
51505743 TTAAAATTAATTTAAAAATGTTTAAATATCT
1 TAAAAATTAATTTAAAAAT-TTTAAA-AT-T
*
51505774 TAAAAATTAA-TTAAAAA-TTAAAAATT
1 TAAAAATTAATTTAAAAATTTTAAAATT
*
51505800 ATAAAAATTATATTT-AAAA-TTAAAAATAT
1 -TAAAAATTA-ATTTAAAAATTTTAAAAT-T
* *
51505829 TTAAAATATACATTTAAAATATTATAAAA
1 TAAAAAT-TA-ATTTAAAA-ATTTTAAAA
51505858 CAAATAATAA
Statistics
Matches: 96, Mismatches: 8, Indels: 20
0.77 0.06 0.16
Matches are distributed among these distances:
26 1 0.01
27 11 0.11
28 34 0.35
29 18 0.19
30 16 0.17
31 11 0.11
32 5 0.05
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (28 bp):
TAAAAATTAATTTAAAAATTTTAAAATT
Found at i:51505794 original size:18 final size:16
Alignment explanation
Indices: 51505773--51505809 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
51505763 TTTAAATATC
51505773 TTAAAAATTAATTAAAAA
1 TTAAAAATT-A-TAAAAA
51505791 TTAAAAATTATAAAAA
1 TTAAAAATTATAAAAA
51505807 TTA
1 TTA
51505810 TATTTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.47
17 1 0.05
18 9 0.47
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
TTAAAAATTATAAAAA
Found at i:51505827 original size:57 final size:56
Alignment explanation
Indices: 51505727--51505834 Score: 130
Period size: 57 Copynumber: 1.9 Consensus size: 56
51505717 ACATTAAATT
* * * **
51505727 TTAAAATTTTAAAATTTTAAAATTAATTTAAAAATGTTTAAATATCTTAAAAATTAA
1 TTAAAAATTAAAAATTTAAAAATTAATTTAAAAATGTAAAAATAT-TTAAAAATTAA
51505784 TTAAAAATTAAAAATTATAAAAATTATATTT-AAAAT-TAAAAATATTTAAAA
1 TTAAAAATTAAAAATT-TAAAAATTA-ATTTAAAAATGTAAAAATATTTAAAA
51505835 TATACATTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
56 6 0.14
57 21 0.48
58 13 0.30
59 4 0.09
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (56 bp):
TTAAAAATTAAAAATTTAAAAATTAATTTAAAAATGTAAAAATATTTAAAAATTAA
Found at i:51505836 original size:9 final size:9
Alignment explanation
Indices: 51505722--51505837 Score: 50
Period size: 8 Copynumber: 12.7 Consensus size: 9
51505712 ATAAAACATT
51505722 AAAT-TTTA
1 AAATATTTA
51505730 AAAT-TTTA
1 AAATATTTA
51505738 AAAT-TTTA
1 AAATATTTA
51505746 AAATTAATTTA
1 AAA-T-ATTTA
*
51505757 AAA-ATGTTT
1 AAATAT-TTA
51505766 AAATATCTTAA
1 AAATAT-TT-A
*
51505777 AAATTAATTA
1 AAA-TATTTA
51505787 AAA-A-TTA
1 AAATATTTA
51505794 AAA-ATTATAA
1 AAATATT-T-A
*
51505804 AAATTATATTT
1 AAA-TAT-TTA
*
51505815 AAA-ATTAA
1 AAATATTTA
51505823 AAATATTTA
1 AAATATTTA
51505832 AAATAT
1 AAATAT
51505838 ACATTTAAAA
Statistics
Matches: 86, Mismatches: 8, Indels: 27
0.71 0.07 0.22
Matches are distributed among these distances:
7 7 0.08
8 27 0.31
9 19 0.22
10 12 0.14
11 15 0.17
12 5 0.06
13 1 0.01
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (9 bp):
AAATATTTA
Found at i:51505848 original size:57 final size:57
Alignment explanation
Indices: 51505726--51505848 Score: 128
Period size: 57 Copynumber: 2.1 Consensus size: 57
51505716 AACATTAAAT
* * **
51505726 TTTAAAATTTTAAAATTTTAAAATTAATTTAAAAATGTTTAAATATCTTAAAAATTAA
1 TTTAAAA-TTAAAAATTTAAAAATTAATTTAAAAATGTAAAAATATCTTAAAAATTAA
*
51505784 TTAAAAATTAAAAATTATAAAAATTATATTT-AAAAT-TAAAAATAT-TT-AAAATATACA
1 TTTAAAATTAAAAATT-TAAAAATTA-ATTTAAAAATGTAAAAATATCTTAAAAAT-TA-A
51505841 TTTAAAAT
1 TTTAAAAT
51505849 ATTATAAAAC
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
55 5 0.09
56 4 0.07
57 23 0.42
58 19 0.35
59 4 0.07
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (57 bp):
TTTAAAATTAAAAATTTAAAAATTAATTTAAAAATGTAAAAATATCTTAAAAATTAA
Found at i:51505928 original size:12 final size:12
Alignment explanation
Indices: 51505911--51505959 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
51505901 TTTAAAAAAT
51505911 TAAAACAAATTA
1 TAAAACAAATTA
51505923 TAAAACAAA-T-
1 TAAAACAAATTA
*
51505933 TAAAA-ATATTA
1 TAAAACAAATTA
51505944 TAAAACAAATTA
1 TAAAACAAATTA
51505956 -AAAA
1 TAAAA
51505960 TTAAAAATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
9 2 0.06
10 6 0.19
11 10 0.31
12 14 0.44
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.24
Consensus pattern (12 bp):
TAAAACAAATTA
Found at i:51505945 original size:21 final size:21
Alignment explanation
Indices: 51505907--51505992 Score: 95
Period size: 21 Copynumber: 4.0 Consensus size: 21
51505897 ATATTTTAAA
*
51505907 AAATTAAAACAAATTATAAAAC
1 AAATTAAAA-ATATTATAAAAC
51505929 AAATTAAAAATATTATAAAAC
1 AAATTAAAAATATTATAAAAC
* *
51505950 AAATT-AAAA-ATTAAAAATTGAA
1 AAATTAAAAATATTATAAA---AC
51505972 AAATTAAAAATATTATAAAAC
1 AAATTAAAAATATTATAAAAC
51505993 TAATAATAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
19 7 0.13
20 4 0.07
21 17 0.31
22 15 0.28
23 4 0.07
24 7 0.13
ACGTcount: A:0.67, C:0.05, G:0.01, T:0.27
Consensus pattern (21 bp):
AAATTAAAAATATTATAAAAC
Found at i:51505962 original size:7 final size:7
Alignment explanation
Indices: 51505950--51505982 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
51505940 ATTATAAAAC
51505950 AAATTAA
1 AAATTAA
51505957 AAATTAA
1 AAATTAA
51505964 AAATTGAA
1 AAATT-AA
51505972 AAATTAA
1 AAATTAA
51505979 AAAT
1 AAAT
51505983 ATTATAAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (7 bp):
AAATTAA
Found at i:51505975 original size:15 final size:14
Alignment explanation
Indices: 51505950--51505982 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
51505940 ATTATAAAAC
51505950 AAATTAAAAATTAA
1 AAATTAAAAATTAA
51505964 AAATTGAAAAATTAA
1 AAATT-AAAAATTAA
51505979 AAAT
1 AAAT
51505983 ATTATAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (14 bp):
AAATTAAAAATTAA
Found at i:51507405 original size:7 final size:7
Alignment explanation
Indices: 51507393--51507418 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
51507383 TATGAGATAC
51507393 GATACTT
1 GATACTT
51507400 GATACTT
1 GATACTT
51507407 GATACTT
1 GATACTT
51507414 GATAC
1 GATAC
51507419 CTGAGTCAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (7 bp):
GATACTT
Found at i:51510793 original size:21 final size:20
Alignment explanation
Indices: 51510764--51510803 Score: 55
Period size: 19 Copynumber: 1.9 Consensus size: 20
51510754 GTCTGAGGAC
51510764 TAAAGTGGAAACAAATTAAAAT
1 TAAAGTGG-AA-AAATTAAAAT
51510786 TAAA-TGGAAAAATTAAAA
1 TAAAGTGGAAAAATTAAAA
51510804 AGAAAAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 3 0.17
22 4 0.22
ACGTcount: A:0.62, C:0.03, G:0.12, T:0.23
Consensus pattern (20 bp):
TAAAGTGGAAAAATTAAAAT
Found at i:51512282 original size:94 final size:94
Alignment explanation
Indices: 51512139--51513538 Score: 1299
Period size: 94 Copynumber: 14.9 Consensus size: 94
51512129 CAGTTTCATC
* * * * ** * **
51512139 TTACTCCATTGCAACTTCAAGGAGATAATG-TTTGTTATTATAG-TCTCAATCCGACCCACTGTA
1 TTACTCCACTGCAACTTCAGGGAGATAA-GATTCGCTATGGTAGAT-TCAATCTGACCCACTACA
* **
51512202 ACTTCAGGGGTATAGGATTTGTAGCTTCACC
64 ACTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * ** * *
51512233 TTACTCCATTGCAACTTCAGGGAGATAATATTTTCTATGGCAGATTCAATCTGACCCACTAAAAC
1 TTACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTACAAC
* * *
51512298 TTCAAGGATATAGGATTTGTAG-TTC-AA
66 TTTAGGGGTATAGGATTTGTAGCTTCAAA
* * * *
51512325 TCTACTCCACTGCAACTTCAGGAAGATAAGATTTGCTATGGTAGATTCAATCTGATCCACTGCAA
1 T-TACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTACAA
51512390 CTTTTTAGGGGTATAGGATTTGTAGCTT-AAA
65 C--TTTAGGGGTATAGGATTTGTAGCTTCAAA
** * * * * * * *
51512421 TTTGTTCCATTGCAACTTCAAGGAGATAAGATT-TCTATGGCAGATTCAATTTGACGCATTGA-A
1 -TTACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACT-ACA
* * *
51512484 ACTTTAGAGGTATAGAATTTTTAGCTT-AAA
64 ACTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * *
51512514 TATACTCTACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGATTCAATCTGATCCACTACAA
1 T-TACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTACAA
51512579 CTTTTTAGGGGTATAGGATTTGTAGCTT-AAA
65 C--TTTAGGGGTATAGGATTTGTAGCTTCAAA
** * * * * * *
51512610 TTTGTTCCATTGCAACTTCAAGGAGATAAGATT-TCTATGGCAGATTCAATCTGACGCATTGA-A
1 -TTACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACT-ACA
* *
51512673 ACTTTAGGGGTATAGAATTTTTAGCTT-AAA
64 ACTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * * *
51512703 TCTACTCTACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGATTCAATTTGACCCATTACAA
1 T-TACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTACAA
* *
51512768 CTTCAGGGGTATAGGATTTGTAGCTTCAAT
65 CTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * * * **
51512798 TTGCTCCACTAG-AACTTCAGGGAGATAAGATTTGCTATGGCA-ACTTCAATCCGACCCGTTACA
1 TTACTCCACT-GCAACTTCAGGGAGATAAGATTCGCTATGGTAGA-TTCAATCTGACCCACTACA
*
51512861 ACTTTAGGGGTATAGGATTTGTAGCTT-TAA
64 ACTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * * *
51512891 TCTACTTCACTGCAGCTTCAGAGAGATAAGATTCGCTATGGTAGATTCAATTTGACCCACTACAA
1 T-TACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTACAA
*
51512956 CTTTAGGGATATAGGATTTGTAGCTTC--A
65 CTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * * *
51512984 TCTGCTCCACTACAACTTCAGGGAGATAA-ATTTTGCTATGGTAGATTCAATC-CAGCCCACTAC
1 T-TACTCCACTGCAACTTCAGGGAGATAAGA-TTCGCTATGGTAGATTCAATCTGA-CCCACTAC
* * *
51513047 AAGTTCAGGGGTATAGGATTTGTAACTTC--A
63 AACTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * ** * * * **
51513077 TCTGCTCCACTGCAACTTCAGGAAGATAAGATTCATTATGGTAGATTTAATCCGACCTACTGTAA
1 T-TACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTACAA
*
51513142 CTTTAGGGGTATAGGATTTTTAGCTTC-AA
65 CTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * * * * **
51513171 TCGT-CTCCACTACAACTTCAAGGATATAAGATTCACTATGGTAGATTCAATCCGACCCACTTTA
1 T--TACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTACA
* * *
51513235 ACTTCAGGGGTATAGGATTTGTAACTT-TAA
64 ACTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * * * * * * *
51513265 TCTACTCCACTGTAACTTTAGGGAAATAAGATTCGCTATGGTA-ACTTTAATGTAACCCATTGCA
1 T-TACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGA-TTCAATCTGACCCACTACA
*
51513329 ACTTTAGGGGTATAGGATTTGTAGCTTCAAT
64 ACTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * *
51513360 TTGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATGGTA-ACTTCAATCTGACCCACTGCAA
1 TTACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGA-TTCAATCTGACCCACTACAA
* * * *
51513424 CGTCAAGGGTATAAGATTTGTAGCTTC-AA
65 CTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * ** *
51513453 TATGCTCCACTACAACTTCAAAGAGATAAGATTCGCTATGGTA-ACTTCAACCTGACCCACTACA
1 T-TACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGA-TTCAATCTGACCCACTACA
* *
51513517 ACTTCATGGGTATAGGATTTGT
64 ACTTTAGGGGTATAGGATTTGT
51513539 GATTTTACTG
Statistics
Matches: 1088, Mismatches: 181, Indels: 74
0.81 0.13 0.06
Matches are distributed among these distances:
92 5 0.00
93 322 0.30
94 601 0.55
95 77 0.07
96 81 0.07
97 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (94 bp):
TTACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTACAAC
TTTAGGGGTATAGGATTTGTAGCTTCAAA
Found at i:51512358 original size:43 final size:43
Alignment explanation
Indices: 51512277--51512359 Score: 98
Period size: 43 Copynumber: 1.9 Consensus size: 43
51512267 CTATGGCAGA
* *
51512277 TTCAATCTGACCCACTAAAACTTCAAGGATATAGGATTTGTAG
1 TTCAATCTGACCCACTAAAACTTCAAGGAGATAAGATTTGTAG
**
51512320 TTCAATCT-ACTCCACTGCAACTTC-AGGAAGATAAGATTTG
1 TTCAATCTGAC-CCACTAAAACTTCAAGG-AGATAAGATTTG
51512360 CTATGGTAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
42 5 0.15
43 29 0.85
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (43 bp):
TTCAATCTGACCCACTAAAACTTCAAGGAGATAAGATTTGTAG
Found at i:51512830 original size:44 final size:44
Alignment explanation
Indices: 51512184--51513522 Score: 242
Period size: 50 Copynumber: 28.5 Consensus size: 44
51512174 TATTATAGTC
* ** *
51512184 TCAATCCGACCCACTGTAACTTCAGGG-GTATAGGATTTGTAGCT
1 TCAATCTGACCCACTACAACTTCAGGGAG-ATAAGATTTGTAGCT
* * * * * *
51512228 TC-ACCTTACTCCATTGCAACTTCAGGGAGATAATATTTTCTATGGCAGAT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA-TTTGTA--GC---T
* * * *
51512278 TCAATCTGACCCACTAAAACTTCAAGGATATAGGATTTGTAG-T
1 TCAATCTGACCCACTACAACTTCAGGGAGATAAGATTTGTAGCT
* * *
51512321 TCAATCT-ACTCCACTGCAACTTCAGGAAGATAAGATTTGCTATGGTAGAT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA--T--T-T-GTAGCT
* * * *
51512371 TCAATCTGATCCACTGCAACTTTTTAGGG-GTATAGGATTTGTAGCT
1 TCAATCTGACCCACTACAAC--TTCAGGGAG-ATAAGATTTGTAGCT
* * ** * * * *
51512417 TAAATTTGTTCCATTGCAACTTCAAGGAGATAAGATTTCTATGGCAGAT
1 TCAATCTGACCCACTACAACTTCAGGGAGATAAGATTTGTA--GC---T
* * * * * *
51512466 TCAATTTGACGCATTGA-AACTTTA--GAGGTATAGAATTTTTAGCT
1 TCAATCTGACCCACT-ACAACTTCAGGGAGATA-AG-ATTTGTAGCT
* * * * * *
51512510 TAAATAT-ACTCTACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGAT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA-T---T-T-GTAGCT
* * *
51512560 TCAATCTGATCCACTACAACTTTTTAGGG-GTATAGGATTTGTAGCT
1 TCAATCTGACCCACTACAAC--TTCAGGGAG-ATAAGATTTGTAGCT
* * ** * * * *
51512606 TAAATTTGTTCCATTGCAACTTCAAGGAGATAAGATTTCTATGGCAGAT
1 TCAATCTGACCCACTACAACTTCAGGGAGATAAGATTTGTA--GC---T
* * * *
51512655 TCAATCTGACGCATTGA-AACTTTAGGG-G-TATAGAATTTTTAGCT
1 TCAATCTGACCCACT-ACAACTTCAGGGAGATA-AG-ATTTGTAGCT
* * * * *
51512699 TAAATCT-ACTCTACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGAT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA-T---T-T-GTAGCT
* * *
51512749 TCAATTTGACCCATTACAACTTCAGGG-GTATAGGATTTGTAGCT
1 TCAATCTGACCCACTACAACTTCAGGGAG-ATAAGATTTGTAGCT
* *
51512793 TCAATTTG-CTCCACTAGAACTTCAGGGAGATAAGATTTGCTATGGCAACT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGATTTG-TA--G---CT
* ** * *
51512843 TCAATCCGACCCGTTACAACTTTAGGG-GTATAGGATTTGTAGCT
1 TCAATCTGACCCACTACAACTTCAGGGAG-ATAAGATTTGTAGCT
* * * * * *
51512887 TTAATCT-ACTTCACTGCAGCTTCAGAGAGATAAGATTCGCTATGGTAGAT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA-T---T-T-GTAGCT
* * * *
51512937 TCAATTTGACCCACTACAACTTTAGGGATATAGGATTTGTAGCT
1 TCAATCTGACCCACTACAACTTCAGGGAGATAAGATTTGTAGCT
*
51512981 TC-ATCTG-CTCCACTACAACTTCAGGGAGATAA-ATTTTGCTATGGTAGAT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA---T--T-T-GTAGCT
* * * *
51513030 TCAATC-CAGCCCACTACAAGTTCAGGG-GTATAGGATTTGTAACT
1 TCAATCTGA-CCCACTACAACTTCAGGGAG-ATAAGATTTGTAGCT
* * *
51513074 TC-ATCTG-CTCCACTGCAACTTCAGGAAGATAAGATTCATTATGGTAGAT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAG----ATT-T-GTAGCT
* * * ** * * *
51513123 TTAATCCGACCTACTGTAACTTTAGGG-GTATAGGATTTTTAGCT
1 TCAATCTGACCCACTACAACTTCAGGGAG-ATAAGATTTGTAGCT
* * * *
51513167 TCAATC-GTCTCCACTACAACTTCAAGGATATAAGATTCACTATGGTAGAT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA-T---T-T-GTAGCT
* ** * *
51513217 TCAATCCGACCCACTTTAACTTCAGGG-GTATAGGATTTGTAACT
1 TCAATCTGACCCACTACAACTTCAGGGAG-ATAAGATTTGTAGCT
* ** * * *
51513261 TTAATCT-ACTCCACTGTAACTTTAGGGAAATAAGATTCGCTATGGTAACT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA-T---T-T-GTAGCT
* * * * * * *
51513311 TTAATGTAACCCATTGCAACTTTAGGG-GTATAGGATTTGTAGCT
1 TCAATCTGACCCACTACAACTTCAGGGAG-ATAAGATTTGTAGCT
* *
51513355 TCAATTTG-CTCCACTACAACTTCAGGGAGATAAGATTCGCTATGGTAACT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA-T---T-T-GTAGCT
* * *
51513405 TCAATCTGACCCACTGCAACGTCAAGGG-TATAAGATTTGTAGCT
1 TCAATCTGACCCACTACAACTTC-AGGGAGATAAGATTTGTAGCT
* ** *
51513449 TCAATATG-CTCCACTACAACTTCAAAGAGATAAGATTCGCTATGGTAACT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA-T---T-T-GTAGCT
*
51513499 TCAACCTGACCCACTACAACTTCA
1 TCAATCTGACCCACTACAACTTCA
51513523 TGGGTATAGG
Statistics
Matches: 938, Mismatches: 209, Indels: 290
0.65 0.15 0.20
Matches are distributed among these distances:
42 5 0.01
43 91 0.10
44 270 0.29
45 34 0.04
46 61 0.07
47 23 0.02
48 18 0.02
49 88 0.09
50 300 0.32
51 28 0.03
52 20 0.02
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (44 bp):
TCAATCTGACCCACTACAACTTCAGGGAGATAAGATTTGTAGCT
Found at i:51512923 original size:188 final size:188
Alignment explanation
Indices: 51512184--51513538 Score: 1463
Period size: 188 Copynumber: 7.2 Consensus size: 188
51512174 TATTATAGTC
* ** * ** * *
51512184 TCAATCCGACCCACTGTAACTTCAGGGGTATAGGATTTGTAGCTTCACCTTACTCCA-TTGCAAC
1 TCAATCTGACCCACTACAACTTTAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTAG-AAC
* * * * * *
51512248 TTCAGGGAGATAATATTTTCTATGGCAGATTCAATCTGACCCACTAAAACTTCAAGGATATAGGA
65 TTCAGGGAGATAAGATTTGCTATGGCAGATTCAATCTGACCCATTACAACTTCAGGGGTATAGGA
* *
51512313 TTTGTAG-TTCAATCTACTCCACTGCAACTTCAG-GAAGATAAGATTTGCTATGGTAGAT
130 TTTGTAGCTTTAATCTACTCCACTGCAACTTCAGAG-AGATAAGATTCGCTATGGTAGAT
* * * * *
51512371 TCAATCTGATCCACTGCAACTTTTTAGGGGTATAGGATTTGTAGCTTAAATTTGTTCCA-TTGCA
1 TCAATCTGACCCACTACAAC--TTTAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTAG-A
* * * * *
51512435 ACTTCAAGGAGATAAGATTT-CTATGGCAGATTCAATTTGACGCATTGA-AACTTTAGAGGTATA
63 ACTTCAGGGAGATAAGATTTGCTATGGCAGATTCAATCTGACCCATT-ACAACTTCAGGGGTATA
* * * * *
51512498 GAATTTTTAGCTTAAATATACTCTACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGAT
127 GGATTTGTAGCTTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGAT
* * * *
51512560 TCAATCTGATCCACTACAACTTTTTAGGGGTATAGGATTTGTAGCTTAAATTTGTTCCA-TTGCA
1 TCAATCTGACCCACTACAAC--TTTAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTAG-A
* * *
51512624 ACTTCAAGGAGATAAGATTT-CTATGGCAGATTCAATCTGACGCATTGA-AACTTTAGGGGTATA
63 ACTTCAGGGAGATAAGATTTGCTATGGCAGATTCAATCTGACCCATT-ACAACTTCAGGGGTATA
* * * *
51512687 GAATTTTTAGCTTAAATCTACTCTACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGAT
127 GGATTTGTAGCTTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGAT
* * *
51512749 TCAATTTGACCCATTACAACTTCAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTAGAACT
1 TCAATCTGACCCACTACAACTTTAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTAGAACT
* * *
51512814 TCAGGGAGATAAGATTTGCTATGGCA-ACTTCAATCCGACCCGTTACAACTTTAGGGGTATAGGA
66 TCAGGGAGATAAGATTTGCTATGGCAGA-TTCAATCTGACCCATTACAACTTCAGGGGTATAGGA
* *
51512878 TTTGTAGCTTTAATCTACTTCACTGCAGCTTCAGAGAGATAAGATTCGCTATGGTAGAT
130 TTTGTAGCTTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGAT
* * * *
51512937 TCAATTTGACCCACTACAACTTTAGGGATATAGGATTTGTAGCTTC-ATCTGCTCCACTACAACT
1 TCAATCTGACCCACTACAACTTTAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTAGAACT
* * * *
51513001 TCAGGGAGATAA-ATTTTGCTATGGTAGATTCAATC-CAGCCCACTACAAGTTCAGGGGTATAGG
66 TCAGGGAGATAAGA-TTTGCTATGGCAGATTCAATCTGA-CCCATTACAACTTCAGGGGTATAGG
* * * **
51513064 ATTTGTAAC-TTCATCTGCTCCACTGCAACTTCAG-GAAGATAAGATTCATTATGGTAGAT
129 ATTTGTAGCTTTAATCTACTCCACTGCAACTTCAGAG-AGATAAGATTCGCTATGGTAGAT
* * * ** * * *
51513123 TTAATCCGACCTACTGTAACTTTAGGGGTATAGGATTTTTAGCTTCAA-TCGTCTCCACTACAAC
1 TCAATCTGACCCACTACAACTTTAGGGGTATAGGATTTGTAGCTTCAATTTG-CTCCACTAGAAC
* * ** * * *
51513187 TTCAAGGATATAAGATTCACTATGGTAGATTCAATCCGACCCACTT-TAACTTCAGGGGTATAGG
65 TTCAGGGAGATAAGATTTGCTATGGCAGATTCAATCTGACCCA-TTACAACTTCAGGGGTATAGG
* * * * *
51513251 ATTTGTAACTTTAATCTACTCCACTGTAACTTTAGGGAAATAAGATTCGCTATGGTA-ACT
129 ATTTGTAGCTTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGA-T
* * * * * *
51513311 TTAATGTAACCCATTGCAACTTTAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTACAACT
1 TCAATCTGACCCACTACAACTTTAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTAGAACT
* * * * * * *
51513376 TCAGGGAGATAAGATTCGCTATGGTA-ACTTCAATCTGACCCACTGCAACGTCAAGGGTATAAGA
66 TCAGGGAGATAAGATTTGCTATGGCAGA-TTCAATCTGACCCATTACAACTTCAGGGGTATAGGA
* * * * *
51513440 TTTGTAGCTTCAATATGCTCCACTACAACTTCAAAGAGATAAGATTCGCTATGGTA-ACT
130 TTTGTAGCTTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGA-T
* * *
51513499 TCAACCTGACCCACTACAACTTCATGGGTATAGGATTTGT
1 TCAATCTGACCCACTACAACTTTAGGGGTATAGGATTTGT
51513539 GATTTTACTG
Statistics
Matches: 1021, Mismatches: 123, Indels: 47
0.86 0.10 0.04
Matches are distributed among these distances:
185 1 0.00
186 83 0.08
187 223 0.22
188 408 0.40
189 305 0.30
190 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (188 bp):
TCAATCTGACCCACTACAACTTTAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTAGAACT
TCAGGGAGATAAGATTTGCTATGGCAGATTCAATCTGACCCATTACAACTTCAGGGGTATAGGAT
TTGTAGCTTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGAT
Found at i:51515656 original size:17 final size:17
Alignment explanation
Indices: 51515636--51515674 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
51515626 ATTAATTCTA
51515636 TAATTATAGAATTAAAT
1 TAATTATAGAATTAAAT
* * *
51515653 TAATTCTATAATTAATT
1 TAATTATAGAATTAAAT
51515670 TAATT
1 TAATT
51515675 CAAGCGACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (17 bp):
TAATTATAGAATTAAAT
Found at i:51523377 original size:74 final size:74
Alignment explanation
Indices: 51523283--51523434 Score: 259
Period size: 74 Copynumber: 2.1 Consensus size: 74
51523273 GTCACTCCCC
* *
51523283 AAAAGGTCGATAGTCTGAAGACTAAAGAGGAAACAAATTAAAATTGAATGGAAAAATTAAAAAGA
1 AAAAGGTCGATAGTCTGAAGACTAAAGAAGAAACAAATTAAAATTAAATGGAAAAATTAAAAAGA
51523348 AAAGAAAAA
66 AAAGAAAAA
* *
51523357 AAAAGGTCGATAGTCTGAAGACTAAAGAAGAAACAAATTAAAATTAAATGGCACAATTAAAAAGA
1 AAAAGGTCGATAGTCTGAAGACTAAAGAAGAAACAAATTAAAATTAAATGGAAAAATTAAAAAGA
*
51523422 AAAGAAAAG
66 AAAGAAAAA
51523431 AAAA
1 AAAA
51523435 TTCAAAGTTT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.60, C:0.07, G:0.18, T:0.16
Consensus pattern (74 bp):
AAAAGGTCGATAGTCTGAAGACTAAAGAAGAAACAAATTAAAATTAAATGGAAAAATTAAAAAGA
AAAGAAAAA
Found at i:51524114 original size:3 final size:3
Alignment explanation
Indices: 51524108--51524163 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
51524098 TGTATTCCAT
51524108 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
51524156 TTC TTC TT
1 TTC TTC TT
51524164 TTTGTTTACA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:51524452 original size:32 final size:32
Alignment explanation
Indices: 51524416--51524479 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
51524406 GGCAGTTGGT
51524416 GAACAATTAAAT-GGAGCAGTTAAATTATACAA
1 GAACAATTAAATAGG-GCAGTTAAATTATACAA
51524448 GAACAATTAAATAGGGCAGTTAAATTATACAA
1 GAACAATTAAATAGGGCAGTTAAATTATACAA
51524480 TTAAAATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 29 0.94
33 2 0.06
ACGTcount: A:0.50, C:0.09, G:0.16, T:0.25
Consensus pattern (32 bp):
GAACAATTAAATAGGGCAGTTAAATTATACAA
Found at i:51530730 original size:16 final size:14
Alignment explanation
Indices: 51530709--51530747 Score: 60
Period size: 16 Copynumber: 2.6 Consensus size: 14
51530699 TGAACCAAAA
51530709 AAATTAATTAATTT
1 AAATTAATTAATTT
51530723 AGAAATTAATTAATTT
1 --AAATTAATTAATTT
51530739 AAATTAATT
1 AAATTAATT
51530748 GAACAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 9 0.39
16 14 0.61
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (14 bp):
AAATTAATTAATTT
Found at i:51535897 original size:30 final size:29
Alignment explanation
Indices: 51535856--51535956 Score: 89
Period size: 30 Copynumber: 3.3 Consensus size: 29
51535846 AATAAATTAA
51535856 CATGAATTAATATAAAATGTGAATGAAAAT
1 CATGAATTAATATAAAAT-TGAATGAAAAT
* * * *
51535886 CATGCATTAATACATACATT-AAT-AAATTAA
1 CATGAATTAATATA-AAATTGAATGAAA--AT
*
51535916 CATGAATTAATATAAAATATGCATGAAAAT
1 CATGAATTAATATAAAAT-TGAATGAAAAT
51535946 CATGTAATTAA
1 CATG-AATTAA
51535957 GCATAATTTC
Statistics
Matches: 55, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
28 3 0.05
29 6 0.11
30 32 0.58
31 11 0.20
32 3 0.05
ACGTcount: A:0.51, C:0.08, G:0.09, T:0.32
Consensus pattern (29 bp):
CATGAATTAATATAAAATTGAATGAAAAT
Found at i:51536967 original size:5 final size:5
Alignment explanation
Indices: 51536951--51536981 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
51536941 TGAGCATTCG
*
51536951 ATCGA ATTGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
51536982 AATTTTCGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (5 bp):
ATCGA
Found at i:51537344 original size:18 final size:19
Alignment explanation
Indices: 51537323--51537363 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
51537313 ATTAAATGTA
*
51537323 AAAATATGATTTTT-TAAT
1 AAAATATGATTTTTAAAAT
*
51537341 AAAA-ATTATTTTTAAAAT
1 AAAATATGATTTTTAAAAT
51537359 AAAAT
1 AAAAT
51537364 GTGAAATTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (19 bp):
AAAATATGATTTTTAAAAT
Found at i:51538021 original size:9 final size:9
Alignment explanation
Indices: 51538007--51538043 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
51537997 TATAGTTTGA
51538007 TATTCGAAT
1 TATTCGAAT
51538016 TATTCGAAT
1 TATTCGAAT
*
51538025 TATTCGAGT
1 TATTCGAAT
51538034 TATTCGAAT
1 TATTCGAAT
51538043 T
1 T
51538044 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:51541594 original size:7 final size:7
Alignment explanation
Indices: 51541582--51541608 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
51541572 AATCGATTGG
51541582 ATTAAAA
1 ATTAAAA
51541589 ATTAAAA
1 ATTAAAA
51541596 ATTAAAA
1 ATTAAAA
51541603 ATTAAA
1 ATTAAA
51541609 TTAATTTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
ATTAAAA
Found at i:51544849 original size:9 final size:9
Alignment explanation
Indices: 51544835--51544865 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
51544825 TTACTAATTT
51544835 AAAATTTTA
1 AAAATTTTA
51544844 AAAATTTTA
1 AAAATTTTA
51544853 AAAATTTTA
1 AAAATTTTA
51544862 AAAA
1 AAAA
51544866 GCCTATATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (9 bp):
AAAATTTTA
Found at i:51555620 original size:21 final size:21
Alignment explanation
Indices: 51555590--51555657 Score: 66
Period size: 21 Copynumber: 3.1 Consensus size: 21
51555580 CTCTCAAAGA
*
51555590 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTGACTTAGAC
** *
51555610 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTGACTTAGAC
51555631 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTGACTTAGAC
51555655 AAA
1 AAA
51555658 TGTTTTTTGT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
20 6 0.16
21 16 0.43
23 1 0.03
24 14 0.38
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTGACTTAGAC
Found at i:51565587 original size:21 final size:21
Alignment explanation
Indices: 51565561--51565603 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
51565551 ATACTTTTTC
* *
51565561 AAAGTATTTTCTTTTGGGTTA
1 AAAGTATTTTCCTTTGGATTA
51565582 AAAGTATTTTCCTTTGGATTA
1 AAAGTATTTTCCTTTGGATTA
51565603 A
1 A
51565604 TAAATGAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.28, C:0.07, G:0.16, T:0.49
Consensus pattern (21 bp):
AAAGTATTTTCCTTTGGATTA
Found at i:51572928 original size:41 final size:41
Alignment explanation
Indices: 51572773--51572918 Score: 217
Period size: 41 Copynumber: 3.6 Consensus size: 41
51572763 TGATTCAGTA
51572773 CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCA-TTAAGCCTGCTAGACATATAGTCTGAAATGTAT
51572814 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
* * *
51572855 CACCGGCATTAAACCTGCTAGACTTAAAGTCTG-AAT-TACTT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTA--T
51572896 CACCGGCATTAAGCCTGCTAGAC
1 CACCGGCATTAAGCCTGCTAGAC
51572919 GTAACGTCTG
Statistics
Matches: 98, Mismatches: 4, Indels: 6
0.91 0.04 0.06
Matches are distributed among these distances:
39 2 0.02
40 5 0.05
41 91 0.93
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
Found at i:51572934 original size:41 final size:40
Alignment explanation
Indices: 51572773--51572939 Score: 173
Period size: 41 Copynumber: 4.0 Consensus size: 40
51572763 TGATTCAGTA
51572773 CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTA--T
1 CACCGGCA-TTAAGCCTGCTAGACATA-AGTCTG-AAT-TACTT
51572814 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTA--T
1 CACCGGCATTAAGCCTGCTAGACATA-AGTCTG-AAT-TACTT
* *
51572855 CACCGGCATTAAACCTGCTAGACTTAAAGTCTGAATTACTT
1 CACCGGCATTAAGCCTGCTAGACAT-AAGTCTGAATTACTT
* *
51572896 CACCGGCATTAAGCCTGCTAGACGTAACGTCTGTATTACATT
1 CACCGGCATTAAGCCTGCTAGACATAA-GTCTGAATTAC-TT
51572938 CA
1 CA
51572940 ATCACTTTAT
Statistics
Matches: 115, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
39 2 0.02
40 7 0.06
41 101 0.88
42 5 0.04
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (40 bp):
CACCGGCATTAAGCCTGCTAGACATAAGTCTGAATTACTT
Found at i:51575545 original size:17 final size:17
Alignment explanation
Indices: 51575525--51575585 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
51575515 TGGGTTTAGA
51575525 AATAATATATAAAAAAT
1 AATAATATATAAAAAAT
* *
51575542 AATAAAATATATAAAAT
1 AATAATATATAAAAAAT
* *
51575559 AATTAATA-ATAACATAT
1 AA-TAATATATAAAAAAT
51575576 AAT-ATATATA
1 AATAATATATA
51575586 TGATTTAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
15 3 0.08
16 4 0.11
17 25 0.69
18 4 0.11
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (17 bp):
AATAATATATAAAAAAT
Found at i:51579690 original size:110 final size:108
Alignment explanation
Indices: 51579556--51579843 Score: 367
Period size: 105 Copynumber: 2.7 Consensus size: 108
51579546 GATTTTGGGT
* *
51579556 TATTCAATTACTCATC-AGGAAGATTTGATTTTCTTGATTTTTTTTCCTTTTCTTCATCATCTTC
1 TATTTAATTTCTCATCAAGG-AGATTTGATTTTCTTGA-TTTTTTTCC-TTTCTTCATCATCTTC
*
51579620 ACTGTTAGAAAAAAAAAAGATTTAG-GATTTT-AGGCAATTCAACATC
63 ACTGTTAGAAAAAAAAAAGATTTAGTG-TTTTGA-ACAATTCAACATC
* * *
51579666 TATTTAATTTCTCATCAAGGAGATTTGATTTTCTTGATTTTTTTCCATTCTTTATTATCTTCACT
1 TATTTAATTTCTCATCAAGGAGATTTGATTTTCTTGATTTTTTTCCTTTCTTCATCATCTTCACT
*
51579731 GTT---AAAAAAAATGATTTAGTGTTTTGAACAATTCAACATC
66 GTTAGAAAAAAAAAAGATTTAGTGTTTTGAACAATTCAACATC
* * * *
51579771 TATTTAATTTCTTATCAAGGAGATTTGATTTTCCT-A-TTTTTCCCTTTCTTCATCCTCTTCACT
1 TATTTAATTTCTCATCAAGGAGATTTGATTTTCTTGATTTTTTTCCTTTCTTCATCATCTTCACT
*
51579834 ATTAGAAAAA
66 GTTAGAAAAA
51579844 TGAATTTAGG
Statistics
Matches: 157, Mismatches: 15, Indels: 16
0.84 0.08 0.09
Matches are distributed among these distances:
103 24 0.15
104 1 0.01
105 64 0.41
106 6 0.04
108 19 0.12
109 9 0.06
110 31 0.20
111 3 0.02
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.46
Consensus pattern (108 bp):
TATTTAATTTCTCATCAAGGAGATTTGATTTTCTTGATTTTTTTCCTTTCTTCATCATCTTCACT
GTTAGAAAAAAAAAAGATTTAGTGTTTTGAACAATTCAACATC
Found at i:51582822 original size:754 final size:754
Alignment explanation
Indices: 51581371--51582884 Score: 2967
Period size: 754 Copynumber: 2.0 Consensus size: 754
51581361 TATTCAACTA
*
51581371 ATGG-GTGTATTCATAAACGAATTTCGAATAATGTATTTTCTCTCTCGTTGTCCTTTTTTCCTAT
1 ATGGAGTGTATTCATAAACGAATTTCGAATAACGTATTTTCTCTCTCGTTGTCCTTTTTTCCTAT
*
51581435 TAAAGGGATGTAATTTTCATAATTTAGACACATAACAAATTAATATCAAACATCGAATAATTGAG
66 TAAAGGGATGTAATTTTCATAATTTAGACACACAACAAATTAATATCAAACATCGAATAATTGAG
51581500 TTGCAAGCTTTGTGTGTACTTTTTTGGAAAACCCTATATTTATTTTTTTGCCTTTGTTAATCCAA
131 TTGCAAGCTTTGTGTGTACTTTTTTGGAAAACCCTATATTTATTTTTTTGCCTTTGTTAATCCAA
51581565 TTTGTGATCAATATTGAAATGAGTCAACGAGTTAGATCCGCTATTTACTACAACAGTCAAATCTG
196 TTTGTGATCAATATTGAAATGAGTCAACGAGTTAGATCCGCTATTTACTACAACAGTCAAATCTG
51581630 TAGTATAGAGGTCGGGTTGGTATTTCTAGGGCCCTAGTCCATGGAATTGACTTTCAATCCTACCA
261 TAGTATAGAGGTCGGGTTGGTATTTCTAGGGCCCTAGTCCATGGAATTGACTTTCAATCCTACCA
51581695 TTTAATTGTGTGAGCTACGGACTAGAATTAGGAAGAAAGTCGAGGGATCGACTTGGGGAAGAAAT
326 TTTAATTGTGTGAGCTACGGACTAGAATTAGGAAGAAAGTCGAGGGATCGACTTGGGGAAGAAAT
51581760 TCGAGGTTGCAATGTAGATATCTTACTTCCATTGAACCCTACAGGTATGGCCTATTTGATGTGAA
391 TCGAGGTTGCAATGTAGATATCTTACTTCCATTGAACCCTACAGGTATGGCCTATTTGATGTGAA
51581825 TGGTGAGCTCTAGGTCAAGGAGGTCATATTATCACACATTTAAAAAAAAATACTGTAATGGAGTT
456 TGGTGAGCTCTAGGTCAAGGAGGTCATATTATCACACATTTAAAAAAAAATACTGTAATGGAGTT
51581890 GTACGTCGAGTTTGTTGAGGCTAATGGATTTGGCCCATCTTTAGCCACTGTTGCAGCTAATGTTG
521 GTACGTCGAGTTTGTTGAGGCTAATGGATTTGGCCCATCTTTAGCCACTGTTGCAGCTAATGTTG
51581955 AAACTGAAGCTAAAGTAGAAAGTCCTACTACATGGTTGTGTGGTGGGTTCGTTGGCTTGTTACAA
586 AAACTGAAGCTAAAGTAGAAAGTCCTACTACATGGTTGTGTGGTGGGTTCGTTGGCTTGTTACAA
51582020 AGATCCTACTACGATGTCCCCGAAACTTCTATGGGTAGACATTCATCGGTCTTTGGCACGCCTTA
651 AGATCCTACTACGATGTCCCCGAAACTTCTATGGGTAGACATTCATCGGTCTTTGGCACGCCTTA
*
51582085 CATCAATGATGTATATAGACTAAAATGCATGCATAGTGT
716 CATCAATGATGTATATAGACTAAAACGCATGCATAGTGT
*
51582124 ATGGAGTGTATTCATAAATGAATTTCGAATAACGTATTTTCTCTCTCGTTGTCCTTTTTTCCTAT
1 ATGGAGTGTATTCATAAACGAATTTCGAATAACGTATTTTCTCTCTCGTTGTCCTTTTTTCCTAT
51582189 TAAAGGGATGTAATTTTCATAATTTAGACACACAACAAATTAATATCAAACATCGAATAATTGAG
66 TAAAGGGATGTAATTTTCATAATTTAGACACACAACAAATTAATATCAAACATCGAATAATTGAG
51582254 TTGCAAGCTTTGTGTGTACTTTTTTGGAAAACCCTATATTTATTTTTTTGCCTTTGTTAATCCAA
131 TTGCAAGCTTTGTGTGTACTTTTTTGGAAAACCCTATATTTATTTTTTTGCCTTTGTTAATCCAA
*
51582319 TTTGTGATCAATATTGAAATGAGTCAACGAGTTAGATCCGTTATTTACTACAACAGTCAAATCTG
196 TTTGTGATCAATATTGAAATGAGTCAACGAGTTAGATCCGCTATTTACTACAACAGTCAAATCTG
51582384 TAGTATAGAGGTCGGGTTGGTATTTCTAGGGCCCTAGTCCATGGAATTGACTTTCAATCCTACCA
261 TAGTATAGAGGTCGGGTTGGTATTTCTAGGGCCCTAGTCCATGGAATTGACTTTCAATCCTACCA
51582449 TTTAATTGTGTGAGCTACGGACTAGAATTAGGAAGAAAGTCGAGGGATCGACTTGGGGAAGAAAT
326 TTTAATTGTGTGAGCTACGGACTAGAATTAGGAAGAAAGTCGAGGGATCGACTTGGGGAAGAAAT
51582514 TCGAGGTTGCAATGTAGATATCTTACTTCCATTGAACCCTACAGGTATGGCCTATTTGATGTGAA
391 TCGAGGTTGCAATGTAGATATCTTACTTCCATTGAACCCTACAGGTATGGCCTATTTGATGTGAA
51582579 TGGTGAGCTCTAGGTCAAGGAGGTCATATTATCACACATTTAAAAAAAAATACTGTAATGGAGTT
456 TGGTGAGCTCTAGGTCAAGGAGGTCATATTATCACACATTTAAAAAAAAATACTGTAATGGAGTT
51582644 GTACGTCGAGTTTGTTGAGGCTAATGGATTTGGCCCATCTTTAGCCACTGTTGCAGCTAATGTTG
521 GTACGTCGAGTTTGTTGAGGCTAATGGATTTGGCCCATCTTTAGCCACTGTTGCAGCTAATGTTG
51582709 AAACTGAAGCTAAAGTAGAAAGTCCTACTACATGGTTGTGTGGTGGGTTCGTTGGCTTGTTACAA
586 AAACTGAAGCTAAAGTAGAAAGTCCTACTACATGGTTGTGTGGTGGGTTCGTTGGCTTGTTACAA
51582774 AGATCCTACTACGATGTCCCCGAAACTTCTATGGGTAGACATTCATCGGTCTTTGGCACGCCTTA
651 AGATCCTACTACGATGTCCCCGAAACTTCTATGGGTAGACATTCATCGGTCTTTGGCACGCCTTA
51582839 CATCAATGATGTATATAGACTAAAACGCATGCATAGTGT
716 CATCAATGATGTATATAGACTAAAACGCATGCATAGTGT
*
51582878 ATAGAGT
1 ATGGAGT
51582885 CCTGAATTCC
Statistics
Matches: 754, Mismatches: 6, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
753 4 0.01
754 750 0.99
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (754 bp):
ATGGAGTGTATTCATAAACGAATTTCGAATAACGTATTTTCTCTCTCGTTGTCCTTTTTTCCTAT
TAAAGGGATGTAATTTTCATAATTTAGACACACAACAAATTAATATCAAACATCGAATAATTGAG
TTGCAAGCTTTGTGTGTACTTTTTTGGAAAACCCTATATTTATTTTTTTGCCTTTGTTAATCCAA
TTTGTGATCAATATTGAAATGAGTCAACGAGTTAGATCCGCTATTTACTACAACAGTCAAATCTG
TAGTATAGAGGTCGGGTTGGTATTTCTAGGGCCCTAGTCCATGGAATTGACTTTCAATCCTACCA
TTTAATTGTGTGAGCTACGGACTAGAATTAGGAAGAAAGTCGAGGGATCGACTTGGGGAAGAAAT
TCGAGGTTGCAATGTAGATATCTTACTTCCATTGAACCCTACAGGTATGGCCTATTTGATGTGAA
TGGTGAGCTCTAGGTCAAGGAGGTCATATTATCACACATTTAAAAAAAAATACTGTAATGGAGTT
GTACGTCGAGTTTGTTGAGGCTAATGGATTTGGCCCATCTTTAGCCACTGTTGCAGCTAATGTTG
AAACTGAAGCTAAAGTAGAAAGTCCTACTACATGGTTGTGTGGTGGGTTCGTTGGCTTGTTACAA
AGATCCTACTACGATGTCCCCGAAACTTCTATGGGTAGACATTCATCGGTCTTTGGCACGCCTTA
CATCAATGATGTATATAGACTAAAACGCATGCATAGTGT
Found at i:51585990 original size:20 final size:20
Alignment explanation
Indices: 51585952--51585988 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
51585942 TTTATATATA
51585952 ATTTAAAGAAAATATTTTAG
1 ATTTAAAGAAAATATTTTAG
*
51585972 ATTTAAA-ATAATATTTT
1 ATTTAAAGAAAATATTTT
51585989 TATCTACAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 9 0.56
20 7 0.44
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (20 bp):
ATTTAAAGAAAATATTTTAG
Found at i:51586839 original size:16 final size:16
Alignment explanation
Indices: 51586818--51586850 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
51586808 TTCGCTGTAT
51586818 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
51586834 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
51586850 T
1 T
51586851 AGCAAATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.36, T:0.21
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:51587062 original size:11 final size:12
Alignment explanation
Indices: 51587022--51587059 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
51587012 TCTTATTATT
51587022 ATTAATATTTTA
1 ATTAATATTTTA
*
51587034 ATTAA-ATATTA
1 ATTAATATTTTA
51587045 ATTTAATATTTTA
1 A-TTAATATTTTA
51587058 AT
1 AT
51587060 AATCAATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
11 6 0.27
12 10 0.45
13 6 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
ATTAATATTTTA
Found at i:51587169 original size:98 final size:95
Alignment explanation
Indices: 51587036--51587237 Score: 302
Period size: 98 Copynumber: 2.1 Consensus size: 95
51587026 ATATTTTAAT
*
51587036 TAAATAT-TAATTTAATATTTTAATAATCAATATTCTTATATGAATTTACTCAAATCATAATATA
1 TAAATATATAATTTAATATTTTAATAATCAATATTCTTATATGAATTTACTAAAATCATAATATA
51587100 TGATACTATGAAATATAATTT-T-ATTATTA
66 TGATACTAT-AAATATAATTTATAATTATTA
51587129 TAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAAAATCATAA
1 TAAATATATAATTTAAT---ATT-TTAATAATCAATATTCTTATATGAATTTACTAAAATCATAA
*
51587194 TATATGATAGTATAAATATAATTTGATAATTATTA
62 TATATGATACTATAAATATAATTT-ATAATTATTA
*
51587229 TTAATATAT
1 TAAATATAT
51587238 TATTAAAATA
Statistics
Matches: 98, Mismatches: 3, Indels: 9
0.89 0.03 0.08
Matches are distributed among these distances:
93 7 0.07
94 9 0.09
97 14 0.14
98 52 0.53
99 1 0.01
100 15 0.15
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.45
Consensus pattern (95 bp):
TAAATATATAATTTAATATTTTAATAATCAATATTCTTATATGAATTTACTAAAATCATAATATA
TGATACTATAAATATAATTTATAATTATTA
Found at i:51587264 original size:98 final size:97
Alignment explanation
Indices: 51587049--51587264 Score: 289
Period size: 98 Copynumber: 2.2 Consensus size: 97
51587039 ATATTAATTT
*
51587049 AATATTTTAATAATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATGAAAT
1 AATATTTTAATAA-CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATGAAAT
51587114 ATAATTTTATTATTATAAATATATAATTTAATA
65 ATAATTTTATTATTATAAATATATAATTTAATA
*
51587147 AA-ATTCTTAATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATAGTAT-AAA
1 AATATT-TTAATAA-CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATGAAA
* *
51587210 TATAATTTGATAATTATTATTAATATATTA-TTAA-A
64 TATAATTT--T-ATTATTATAAATATATAATTTAATA
51587245 ATATATTTTAATTAA-AATAT
1 A-ATATTTTAA-TAACAATAT
51587265 ATGATTTAAT
Statistics
Matches: 107, Mismatches: 4, Indels: 14
0.86 0.03 0.11
Matches are distributed among these distances:
97 14 0.13
98 61 0.57
99 10 0.09
100 22 0.21
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (97 bp):
AATATTTTAATAACAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATGAAATA
TAATTTTATTATTATAAATATATAATTTAATA
Found at i:51587405 original size:91 final size:91
Alignment explanation
Indices: 51587296--51587591 Score: 506
Period size: 91 Copynumber: 3.3 Consensus size: 91
51587286 TAATTATTAG
* * *
51587296 TAAT-AATTTTCTTATATGAATTTGTATAATTTAATATAATTATTATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
* *
51587360 AATATATAATTTCATAAAATTCTTGG
66 GATATATAATTTCATAAAATTCTTGA
51587386 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
51587451 GATATATAATTTCATAAAATTCTTGA
66 GATATATAATTTCATAAAATTCTTGA
51587477 TAATAAA-TTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
* *
51587541 GATATATAAGTTCATAAAATTCTTAA
66 GATATATAATTTCATAAAATTCTTGA
*
51587567 TAATAAATATTCTTATATGAATTTA
1 TAATAAATTTTCTTATATGAATTTA
51587592 CTAAAATCAT
Statistics
Matches: 196, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
90 92 0.47
91 104 0.53
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
GATATATAATTTCATAAAATTCTTGA
Found at i:51592102 original size:53 final size:53
Alignment explanation
Indices: 51592039--51592144 Score: 185
Period size: 53 Copynumber: 2.0 Consensus size: 53
51592029 GCAGTGGATT
*
51592039 TCAAAAACCACAAAAAATGACAGGAAAAAAATGAAAAAAGAGCCCGAGAGAGA
1 TCAAAAACCACAAAAAATGACAGGAAAAAAATGAAAAAAGAGACCGAGAGAGA
* *
51592092 TCAAAAACCACAACAAATGACAGGGAAAAAATGAAAAAAGAGACCGAGAGAGA
1 TCAAAAACCACAAAAAATGACAGGAAAAAAATGAAAAAAGAGACCGAGAGAGA
51592145 GAATTGTTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.59, C:0.15, G:0.20, T:0.06
Consensus pattern (53 bp):
TCAAAAACCACAAAAAATGACAGGAAAAAAATGAAAAAAGAGACCGAGAGAGA
Found at i:51593668 original size:25 final size:26
Alignment explanation
Indices: 51593616--51593664 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
51593606 TATATATTAC
51593616 TTTTTTTATTAATATTAAGATTTAAT
1 TTTTTTTATTAATATTAAGATTTAAT
* *
51593642 TTTTTTTGTT-ATTTTAAG-TTTAA
1 TTTTTTTATTAATATTAAGATTTAA
51593665 ATTTAAGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 5 0.24
25 7 0.33
26 9 0.43
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (26 bp):
TTTTTTTATTAATATTAAGATTTAAT
Found at i:51596454 original size:5 final size:5
Alignment explanation
Indices: 51596444--51596468 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
51596434 ATATGGTCAA
51596444 CGGGT CGGGT CGGGT CGGGT CGGGT
1 CGGGT CGGGT CGGGT CGGGT CGGGT
51596469 GGCACCTGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.60, T:0.20
Consensus pattern (5 bp):
CGGGT
Found at i:51596702 original size:17 final size:16
Alignment explanation
Indices: 51596658--51596705 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
51596648 AATGAACGGT
*
51596658 AGAGAAAAA-AAAAAG
1 AGAGAAAAAGAAGAAG
*
51596673 AGAGAAAGGAGAAGAAG
1 AGAGAAA-AAGAAGAAG
51596690 AGAAGAAAAAGAAGAA
1 AG-AGAAAAAGAAGAA
51596706 AGGTAATGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 7 0.26
16 1 0.04
17 14 0.52
18 5 0.19
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (16 bp):
AGAGAAAAAGAAGAAG
Found at i:51596860 original size:82 final size:81
Alignment explanation
Indices: 51596791--51597010 Score: 286
Period size: 80 Copynumber: 2.7 Consensus size: 81
51596781 TATTAATTAT
*
51596791 TAATTATAAATTAT-TTATATTTAGTGTTTATAG-TTTGGATTAGTATTTTGTATGAATATTCTA
1 TAATTAT--ATTATATTA-ATTTAGTATTTATAGTTTTGGATTAGTATTTTGTATGAATATTCTA
51596854 ATTTTTTGTATGAATATTG
63 ATTTTTTGTATGAATATTG
* * *
51596873 TAATTATTTTATAATTAATTTTGTATTTATAGTTTTGGATTAGTATTTTGTATGAATATTGTAA-
1 TAATTATATTAT-ATTAATTTAGTATTTATAGTTTTGGATTAGTATTTTGTATGAATATTCTAAT
*
51596937 -TATTGTATGAATATTG
65 TTTTTGTATGAATATTG
* *
51596953 TAATTATTTTATAATTAATTTTGTATTTATAGTTTTGGATTAGTATTTATGTAATGAA
1 TAATTATATTAT-ATTAATTTAGTATTTATAGTTTTGGATTAGTATTT-TGT-ATGAA
51597011 GTACATATCA
Statistics
Matches: 128, Mismatches: 5, Indels: 10
0.90 0.03 0.07
Matches are distributed among these distances:
80 67 0.52
81 16 0.12
82 45 0.35
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.55
Consensus pattern (81 bp):
TAATTATATTATATTAATTTAGTATTTATAGTTTTGGATTAGTATTTTGTATGAATATTCTAATT
TTTTGTATGAATATTG
Found at i:51596861 original size:21 final size:22
Alignment explanation
Indices: 51596834--51596882 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 22
51596824 TTTGGATTAG
51596834 TATTTTGTATGAATATTCTAAT
1 TATTTTGTATGAATATTCTAAT
*
51596856 T-TTTTGTATGAATATTGTAAT
1 TATTTTGTATGAATATTCTAAT
51596877 TATTTT
1 TATTTT
51596883 ATAATTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.59
Consensus pattern (22 bp):
TATTTTGTATGAATATTCTAAT
Found at i:51596944 original size:19 final size:19
Alignment explanation
Indices: 51596920--51596956 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
51596910 GATTAGTATT
51596920 TTGTATGAATATTGTAATA
1 TTGTATGAATATTGTAATA
51596939 TTGTATGAATATTGTAAT
1 TTGTATGAATATTGTAAT
51596957 TATTTTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (19 bp):
TTGTATGAATATTGTAATA
Found at i:51596965 original size:80 final size:81
Alignment explanation
Indices: 51596817--51597010 Score: 329
Period size: 80 Copynumber: 2.4 Consensus size: 81
51596807 ATATTTAGTG
*
51596817 TTTATAG-TTTGGATTAGTATTTTGTATGAATATTCTAATTTTTTGTATGAATATTGTAATTATT
1 TTTATAGTTTTGGATTAGTATTTTGTATGAATATTCTAA-TTATTGTATGAATATTGTAATTATT
51596881 TTATAATTAATTTTGTA
65 TTATAATTAATTTTGTA
*
51596898 TTTATAGTTTTGGATTAGTATTTTGTATGAATATTGTAA-TATTGTATGAATATTGTAATTATTT
1 TTTATAGTTTTGGATTAGTATTTTGTATGAATATTCTAATTATTGTATGAATATTGTAATTATTT
51596962 TATAATTAATTTTGTA
66 TATAATTAATTTTGTA
51596978 TTTATAGTTTTGGATTAGTATTTATGTAATGAA
1 TTTATAGTTTTGGATTAGTATTT-TGT-ATGAA
51597011 GTACATATCA
Statistics
Matches: 108, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
80 63 0.58
81 10 0.09
82 35 0.32
ACGTcount: A:0.30, C:0.01, G:0.14, T:0.55
Consensus pattern (81 bp):
TTTATAGTTTTGGATTAGTATTTTGTATGAATATTCTAATTATTGTATGAATATTGTAATTATTT
TATAATTAATTTTGTA
Found at i:51597383 original size:15 final size:15
Alignment explanation
Indices: 51597363--51597395 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
51597353 CTGCCACGAC
51597363 ATGTGTACATGGATA
1 ATGTGTACATGGATA
51597378 ATGTGTACATGGATA
1 ATGTGTACATGGATA
51597393 ATG
1 ATG
51597396 AAGTGTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.33
Consensus pattern (15 bp):
ATGTGTACATGGATA
Found at i:51600087 original size:27 final size:27
Alignment explanation
Indices: 51600025--51600093 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
51600015 GAAAAATCAG
*
51600025 ACCATTGGCGCCTCTTAACATGGCACC
1 ACCATTGGCGCCTCTCAACATGGCACC
* * *
51600052 ACTAATGGCGCCTCTC-AGATAGGCACC
1 ACCATTGGCGCCTCTCAACAT-GGCACC
*
51600079 ACCATTGGCACCTCT
1 ACCATTGGCGCCTCT
51600094 GAACTATGTA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
26 3 0.09
27 31 0.91
ACGTcount: A:0.23, C:0.36, G:0.19, T:0.22
Consensus pattern (27 bp):
ACCATTGGCGCCTCTCAACATGGCACC
Found at i:51605271 original size:51 final size:51
Alignment explanation
Indices: 51605182--51605310 Score: 131
Period size: 51 Copynumber: 2.5 Consensus size: 51
51605172 AAAGGTCGCA
*
51605182 TGTGTAGTACTATGTGCAGGCTAGT--ATGCGTACCGGATAGCTT-CGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTACATGCGTA-CGGATA--TTACGATCACG
* * * *
51605233 TGTGTAGTACTATGTGCAGGCTACTACATGTGT-TGGATATTAATGGTCACG
1 TGTGTAGTACTATGTGCAGGCTACTACATGCGTACGGATATT-ACGATCACG
* *
51605284 GGTTTAGTACTATGTGCAGGCTACTAC
1 TGTGTAGTACTATGTGCAGGCTACTAC
51605311 GTGAACCGAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
49 2 0.03
51 60 0.90
53 5 0.07
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAGGCTACTACATGCGTACGGATATTACGATCACG
Found at i:51619899 original size:77 final size:81
Alignment explanation
Indices: 51619818--51619989 Score: 226
Period size: 83 Copynumber: 2.1 Consensus size: 81
51619808 ACGACATGAT
* * *
51619818 TAAATCCTGAAACAAAATTATTTAATTAAATCTT-GTTTGGAAACAAAATC-A-A-AATAAAATT
1 TAAATCCCGAAACAAAATTATTTAATTAAATATTCGTTTGGAAACAAAATCAAGACAATAAAATC
51619879 TATTAAACGGTAGGAA
66 TATTAAACGGTAGGAA
* * *
51619895 TAAATCCCAAAACAAAATTATTTGATTAAGTATTCGTTTGGAAACAAAATCAAGATCGAATAAAA
1 TAAATCCCGAAACAAAATTATTTAATTAAATATTCGTTTGGAAACAAAATCAAGA-C-AATAAAA
* *
51619960 TCTGTTAAATGGTAGGAA
64 TCTATTAAACGGTAGGAA
51619978 TAAATCCCGAAA
1 TAAATCCCGAAA
51619990 AAATTAGTCA
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
77 29 0.36
78 16 0.20
79 1 0.01
80 1 0.01
83 33 0.41
ACGTcount: A:0.48, C:0.11, G:0.12, T:0.29
Consensus pattern (81 bp):
TAAATCCCGAAACAAAATTATTTAATTAAATATTCGTTTGGAAACAAAATCAAGACAATAAAATC
TATTAAACGGTAGGAA
Found at i:51619978 original size:83 final size:77
Alignment explanation
Indices: 51619780--51619990 Score: 215
Period size: 77 Copynumber: 2.6 Consensus size: 77
51619770 ATTAAATTCT
* * * * ** * * **
51619780 GAAACATAATCAAAATCAAGTCTGTTAAACGACATGATTAAATCCTGAAACAAAATTATTTAATT
1 GAAACAAAATCAAAATAAAATCTATTAAACGGTAGGAATAAATCCCAAAACAAAATTATTTAATT
*
51619845 AAATCTTGTTTG
66 AAATATTGTTTG
* *
51619857 GAAACAAAATCAAAATAAAATTTATTAAACGGTAGGAATAAATCCCAAAACAAAATTATTTGATT
1 GAAACAAAATCAAAATAAAATCTATTAAACGGTAGGAATAAATCCCAAAACAAAATTATTTAATT
*
51619922 AAGTATTCGTTTG
66 AAATATT-GTTTG
* *
51619935 GAAACAAAATCAAGATCGAATAAAATCTGTTAAATGGTAGGAATAAATCCCGAAAA
1 GAAACAAAATC-A-A---AATAAAATCTATTAAACGGTAGGAATAAATCCC-AAAA
51619991 AATTAGTCAA
Statistics
Matches: 110, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
77 58 0.53
78 16 0.15
79 1 0.01
80 1 0.01
83 30 0.27
84 4 0.04
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.28
Consensus pattern (77 bp):
GAAACAAAATCAAAATAAAATCTATTAAACGGTAGGAATAAATCCCAAAACAAAATTATTTAATT
AAATATTGTTTG
Found at i:51620211 original size:86 final size:84
Alignment explanation
Indices: 51620022--51620215 Score: 194
Period size: 86 Copynumber: 2.2 Consensus size: 84
51620012 TTTGGGAGCA
* * * * * *
51620022 AAATAAAAATTGAATAAAATCTGTTAAATGGCGGGAATAAATCCCGAAATATATTTTATTTTATT
1 AAATAAAAAATGAATAAAAT-TGTTAAACGACGAGAATAAATCCCGAAATAGATTTTATTTAATT
* *
51620087 TAATTTCTCGTTTGGCAACT
65 TAATTACTCGTTTGGCAAAT
* ***
51620107 AAATATAAAACTGGAATAAAATTGTTAAACGACGAGAATAAATTTTGAAATAGATTTTATTTAAT
1 AAATA-AAAAAT-GAATAAAATTGTTAAACGACGAGAATAAATCCCGAAATAGATTTTATTTAA-
*
51620172 TTTAA-TACTCATTTTGG-AAAT
63 TTTAATTACTC-GTTTGGCAAAT
51620193 AACATAAAAAATGAAATAAAATT
1 AA-ATAAAAAATG-AATAAAATT
51620216 TATTAAACAA
Statistics
Matches: 90, Mismatches: 13, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
85 6 0.07
86 62 0.69
87 22 0.24
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.36
Consensus pattern (84 bp):
AAATAAAAAATGAATAAAATTGTTAAACGACGAGAATAAATCCCGAAATAGATTTTATTTAATTT
AATTACTCGTTTGGCAAAT
Found at i:51620265 original size:65 final size:66
Alignment explanation
Indices: 51620163--51620288 Score: 173
Period size: 65 Copynumber: 1.9 Consensus size: 66
51620153 GAAATAGATT
* * * *
51620163 TTATTTAATTTTAATACTCATTTTGGAAATAACATAAAAAATGAAATAAAATTTATTAAACAAAT
1 TTATTTAATTTTAATACTCAGTTTGGAAACAAAATAAAAAATGAAATAAAATCTATTAAACAAAT
51620228 C
66 C
* * * *
51620229 TTATTTAATTTTAATTCTC-GTTTGGAAACAAAATAAAAAATGGAGTAAAATCTGTTAAAC
1 TTATTTAATTTTAATACTCAGTTTGGAAACAAAATAAAAAATGAAATAAAATCTATTAAAC
51620289 GGTGGGAATA
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
65 34 0.65
66 18 0.35
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.37
Consensus pattern (66 bp):
TTATTTAATTTTAATACTCAGTTTGGAAACAAAATAAAAAATGAAATAAAATCTATTAAACAAAT
C
Found at i:51620972 original size:20 final size:20
Alignment explanation
Indices: 51620944--51620997 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
51620934 TTTAAAGGAG
* *
51620944 AAATTAAATCAATTTGATTA
1 AAATCAAATCAATTTAATTA
* *
51620964 AAATCAAATCAAATTAATTG
1 AAATCAAATCAATTTAATTA
*
51620984 AAATCAAATAAATT
1 AAATCAAATCAATT
51620998 AGGATATATG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (20 bp):
AAATCAAATCAATTTAATTA
Found at i:51622167 original size:17 final size:18
Alignment explanation
Indices: 51622130--51622167 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
51622120 TAATATTTTA
*
51622130 ATTTATTAAATAAATAAC
1 ATTTATTAAATAAAGAAC
*
51622148 ATTTATTAAAT-TAGAAC
1 ATTTATTAAATAAAGAAC
51622165 ATT
1 ATT
51622168 AACTAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (18 bp):
ATTTATTAAATAAAGAAC
Found at i:51631491 original size:25 final size:24
Alignment explanation
Indices: 51631411--51631492 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 24
51631401 CATATAAACA
* *
51631411 GGAAGCTCTTACGAGCCATATAACG
1 GGAAGCTCATACGAGCC-TATAATG
**
51631436 GGAAGCTCATGTGAG-CTAAGTAATG
1 GGAAGCTCATACGAGCCT-A-TAATG
* *
51631461 GAAAGCTCATACGAGCCGTATATTG
1 GGAAGCTCATACGAGCC-TATAATG
51631486 GGAAGCT
1 GGAAGCT
51631493 TTTGCAAGCC
Statistics
Matches: 44, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
23 1 0.02
24 2 0.05
25 38 0.86
26 2 0.05
27 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (24 bp):
GGAAGCTCATACGAGCCTATAATG
Found at i:51647654 original size:13 final size:13
Alignment explanation
Indices: 51647636--51647662 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51647626 AATATAAGAC
51647636 ACATAAAAATCAA
1 ACATAAAAATCAA
51647649 ACATAAAAATCAA
1 ACATAAAAATCAA
51647662 A
1 A
51647663 GCATGATTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.15, G:0.00, T:0.15
Consensus pattern (13 bp):
ACATAAAAATCAA
Found at i:51652796 original size:23 final size:23
Alignment explanation
Indices: 51652729--51652796 Score: 54
Period size: 19 Copynumber: 3.1 Consensus size: 23
51652719 AATATGAAAA
*
51652729 AAAAGAAATACATAACAATTTTTT
1 AAAA-AAATACATAATAATTTTTT
** * *
51652753 AAAACTATA-AT-AT-A-GTGTT
1 AAAAAAATACATAATAATTTTTT
51652772 AAAAAAATACATAATAATTTTTT
1 AAAAAAATACATAATAATTTTTT
51652795 AA
1 AA
51652797 TACTACTTAT
Statistics
Matches: 31, Mismatches: 9, Indels: 9
0.63 0.18 0.18
Matches are distributed among these distances:
19 10 0.32
20 3 0.10
21 3 0.10
22 3 0.10
23 8 0.26
24 4 0.13
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.35
Consensus pattern (23 bp):
AAAAAAATACATAATAATTTTTT
Found at i:51653536 original size:15 final size:16
Alignment explanation
Indices: 51653509--51653540 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
51653499 CTTTTTACTC
51653509 TAATATAACATACTTG
1 TAATATAACATACTTG
51653525 TAATATAA-ATACTTG
1 TAATATAACATACTTG
51653540 T
1 T
51653541 GGAATAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (16 bp):
TAATATAACATACTTG
Found at i:51655769 original size:15 final size:15
Alignment explanation
Indices: 51655740--51655770 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
51655730 ATAGATGTAT
51655740 AATATAATATTAAAA
1 AATATAATATTAAAA
51655755 AATA-AATATTAAAA
1 AATATAATATTAAAA
51655769 AA
1 AA
51655771 GACATATGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AATATAATATTAAAA
Found at i:51662839 original size:37 final size:35
Alignment explanation
Indices: 51662796--51662893 Score: 106
Period size: 36 Copynumber: 2.7 Consensus size: 35
51662786 ATCATTAAAA
* *
51662796 ACAGGTCTAACCCAACTTTTTTTAAAATTACTTTAG
1 ACAGGTCTATCCCAAC-TTTTTTAAAATTACTTTAC
* ** *
51662832 ACAAGGTCTATCTCAACTTTTTTAAGGTTGCTTTAC
1 AC-AGGTCTATCCCAACTTTTTTAAAATTACTTTAC
*
51662868 ACAGGTCTATCCTAACCTTTTTTAAA
1 ACAGGTCTATCCCAA-CTTTTTTAAA
51662894 GGTTGCCTTA
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
35 11 0.22
36 28 0.55
37 12 0.24
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (35 bp):
ACAGGTCTATCCCAACTTTTTTAAAATTACTTTAC
Found at i:51662927 original size:73 final size:73
Alignment explanation
Indices: 51662796--51663153 Score: 322
Period size: 73 Copynumber: 4.9 Consensus size: 73
51662786 ATCATTAAAA
* * * * * * * *
51662796 ACAGGTCTAACCCAACTTTTTTTAAA-ATTACTTTAGACAAGGT-CTATCTCAACTTTTTTAAGG
1 ACAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACATGGTGC-ATCCCAACCTTTTTAAGG
* *
51662859 TTGCTTTAC
65 TTGCCTTAG
* *
51662868 ACAGGTCTATCCTAACCTTTTTTAAAGGTTGCCTTAGACATGGTGCAACCCAACCTTTTTAAGGT
1 ACAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACATGGTGCATCCCAACCTTTTTAAGGT
* *
51662933 TGTCTTAA
66 TGCCTTAG
* * * *
51662941 ACAGGTCTAT-CCAACCTTTTCTTATAGGTTGTCTTAGACAAGGT-CTATCCTAACCTTTTTAAG
1 ACAGGTCTATCCCAACCTTTT-TTAAAGGTTGCCTTAGACATGGTGC-ATCCCAACCTTTTTAAG
51663004 GTTGCCTTAG
64 GTTGCCTTAG
* * * * *
51663014 ACAGCTCTATCCCAATCATTTTTAAAAGTTTCCTTAGACAAGTGGTG--TCCCAACCTTTTTAAG
1 ACAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGAC-A-TGGTGCATCCCAACCTTTTTAAG
*
51663077 GTTACCTTAG
64 GTTGCCTTAG
* **
51663087 ACAAGGTTTATCCCAACC-TTTTT-AAGGTTGCCTTAG--ATGGGTTTATCCCAACCTATTTTAA
1 AC-AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAT-GGTGCATCCCAACCT-TTTT-A
51663148 AGGTTG
62 AGGTTG
51663154 GTCTTGATTA
Statistics
Matches: 234, Mismatches: 38, Indels: 27
0.78 0.13 0.09
Matches are distributed among these distances:
68 1 0.00
69 4 0.02
71 9 0.04
72 48 0.21
73 147 0.63
74 22 0.09
75 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.37
Consensus pattern (73 bp):
ACAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACATGGTGCATCCCAACCTTTTTAAGGT
TGCCTTAG
Found at i:51663000 original size:146 final size:145
Alignment explanation
Indices: 51662828--51663123 Score: 368
Period size: 146 Copynumber: 2.0 Consensus size: 145
51662818 TAAAATTACT
* * * * *
51662828 TTAGACAAGGTCTATCTCAACTTTTTTAAGGTTGCTTTACACAGGTCTATCCTAACCTTTTTTAA
1 TTAGACAAGGTCTATCTCAACCTTTTTAAGGTTGCCTTACACAGCTCTATCCCAACCATTTTTAA
* **
51662893 AGGTTGCCTTAGAC-A-TGGTGCAACCCAACCTTTTTAAGGTTGTCTTAAAC-AGGTCTAT-CCA
66 AAGTTGCCTTAGACAAGTGGTG--ACCCAACCTTTTTAAGGTTACCTTAAACAAGGTCTATCCCA
*
51662954 ACCTTTTCTTATAGGTTGTC
129 ACC-TTT-TTA-AGGTTGCC
* *
51662974 TTAGACAAGGTCTATC-CTAACCTTTTTAAGGTTGCCTTAGACAGCTCTATCCCAATCATTTTTA
1 TTAGACAAGGTCTATCTC-AACCTTTTTAAGGTTGCCTTACACAGCTCTATCCCAACCATTTTTA
* * * *
51663038 AAAGTTTCCTTAGACAAGTGGTGTCCCAACCTTTTTAAGGTTACCTTAGACAAGGTTTATCCCAA
65 AAAGTTGCCTTAGACAAGTGGTGACCCAACCTTTTTAAGGTTACCTTAAACAAGGTCTATCCCAA
51663103 CCTTTTTAAGGTTGCC
130 CCTTTTTAAGGTTGCC
51663119 TTAGA
1 TTAGA
51663124 TGGGTTTATC
Statistics
Matches: 130, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
145 13 0.10
146 95 0.73
147 11 0.08
148 11 0.08
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.37
Consensus pattern (145 bp):
TTAGACAAGGTCTATCTCAACCTTTTTAAGGTTGCCTTACACAGCTCTATCCCAACCATTTTTAA
AAGTTGCCTTAGACAAGTGGTGACCCAACCTTTTTAAGGTTACCTTAAACAAGGTCTATCCCAAC
CTTTTTAAGGTTGCC
Found at i:51663013 original size:36 final size:36
Alignment explanation
Indices: 51662828--51663153 Score: 306
Period size: 36 Copynumber: 8.9 Consensus size: 36
51662818 TAAAATTACT
* * *
51662828 TTAGACAAGGTCTATCTCAACTTTTTTAAGGTTGCT
1 TTAGACAAGGTCTATCCCAACCTTTTTAAGGTTGCC
* *
51662864 TTACAC-AGGTCTATCCTAACCTTTTTTAAAGGTTGCC
1 TTAGACAAGGTCTATCCCAACC-TTTTT-AAGGTTGCC
* * *
51662901 TTAGACATGGTGC-AACCCAACCTTTTTAAGGTTGTC
1 TTAGACAAGGT-CTATCCCAACCTTTTTAAGGTTGCC
* *
51662937 TTAAAC-AGGTCTAT-CCAACCTTTTCTTATAGGTTGTC
1 TTAGACAAGGTCTATCCCAACC-TTT-TTA-AGGTTGCC
*
51662974 TTAGACAAGGTCTATCCTAACCTTTTTAAGGTTGCC
1 TTAGACAAGGTCTATCCCAACCTTTTTAAGGTTGCC
* * * *
51663010 TTAGAC-AGCTCTATCCCAATCATTTTTAAAAGTTTCC
1 TTAGACAAGGTCTATCCCAA-CCTTTTT-AAGGTTGCC
* * *
51663047 TTAGACAA-GTGGTGTCCCAACCTTTTTAAGGTTACC
1 TTAGACAAGGT-CTATCCCAACCTTTTTAAGGTTGCC
*
51663083 TTAGACAAGGTTTATCCCAACCTTTTTAAGGTTGCC
1 TTAGACAAGGTCTATCCCAACCTTTTTAAGGTTGCC
** *
51663119 TTAGA-TGGGTTTATCCCAACCTATTTTAAAGGTTG
1 TTAGACAAGGTCTATCCCAACCT-TTTT-AAGGTTG
51663154 GTCTTGATTA
Statistics
Matches: 241, Mismatches: 32, Indels: 33
0.79 0.10 0.11
Matches are distributed among these distances:
34 7 0.03
35 45 0.19
36 91 0.38
37 63 0.26
38 29 0.12
39 6 0.02
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.37
Consensus pattern (36 bp):
TTAGACAAGGTCTATCCCAACCTTTTTAAGGTTGCC
Found at i:51663177 original size:109 final size:105
Alignment explanation
Indices: 51662835--51663160 Score: 295
Period size: 109 Copynumber: 3.0 Consensus size: 105
51662825 ACTTTAGACA
* * *
51662835 AGGTCTATCTCAACTTTTTTAAGGTTGCTTTACAC-AGGTCTATCCTAACCTTTTTTAAAGGTTG
1 AGGTCTATC-CAACCTTTTTAAGGTTGCCTTAGACAAGGTCTATCCTAACC-TTTTT-AAGGTTG
* *
51662899 CCTTAGACATGGTGC-AACCCAACCT-TTTT-AAGGTTGTCTTAAAC
63 CCTTAG--ATGGT-CTATCCCAACCTATTTTAAAGGTTGTCTT-GAC
*
51662943 AGGTCTATCCAACCTTTTCTTATAGGTTGTCTTAGACAAGGTCTATCCTAACCTTTTTAAGGTTG
1 AGGTCTATCCAACC-TTT-TTA-AGGTTGCCTTAGACAAGGTCTATCCTAACCTTTTTAAGGTTG
* * * *
51663008 CCTTAGACAGCTCTATCCCAATC-ATTTTTAAAAGTT-TCCTTAGAC
63 CCTTAGA-TGGTCTATCCCAACCTA-TTTTAAAGGTTGT-CTT-GAC
* * * * * *
51663053 AAGTGGTGTCCCAACCTTTTTAAGGTTACCTTAGACAAGGTTTATCCCAACCTTTTTAAGGTTGC
1 AGGT-CTAT-CCAACCTTTTTAAGGTTGCCTTAGACAAGGTCTATCCTAACCTTTTTAAGGTTGC
*
51663118 CTTAGATGGGTTTATCCCAACCTATTTTAAAGGTTGGTCTTGA
64 CTTAGAT-GGTCTATCCCAACCTATTTTAAAGGTT-GTCTTGA
51663161 TTAGGTTTTT
Statistics
Matches: 180, Mismatches: 22, Indels: 31
0.77 0.09 0.13
Matches are distributed among these distances:
107 6 0.03
108 21 0.12
109 89 0.49
110 37 0.21
111 21 0.12
112 6 0.03
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (105 bp):
AGGTCTATCCAACCTTTTTAAGGTTGCCTTAGACAAGGTCTATCCTAACCTTTTTAAGGTTGCCT
TAGATGGTCTATCCCAACCTATTTTAAAGGTTGTCTTGAC
Found at i:51663865 original size:13 final size:13
Alignment explanation
Indices: 51663847--51663878 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
51663837 ATATATATAC
51663847 GCAGTTGAAAAAG
1 GCAGTTGAAAAAG
51663860 GCAGTTGAAAAAG
1 GCAGTTGAAAAAG
51663873 GCAGTT
1 GCAGTT
51663879 CCATTCAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.41, C:0.09, G:0.31, T:0.19
Consensus pattern (13 bp):
GCAGTTGAAAAAG
Found at i:51664669 original size:21 final size:21
Alignment explanation
Indices: 51664643--51664695 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 21
51664633 TCATTTTCAG
51664643 CAACTTTTTCTTCTTTAGCAA
1 CAACTTTTTCTTCTTTAGCAA
*
51664664 CAAC--TTTC-ACTTTAGCAA
1 CAACTTTTTCTTCTTTAGCAA
51664682 CAA-TTTCTTCTTCT
1 CAACTTT-TTCTTCT
51664696 ACAACATCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
18 12 0.46
19 5 0.19
20 3 0.12
21 6 0.23
ACGTcount: A:0.25, C:0.26, G:0.04, T:0.45
Consensus pattern (21 bp):
CAACTTTTTCTTCTTTAGCAA
Found at i:51664701 original size:18 final size:19
Alignment explanation
Indices: 51664649--51664693 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 19
51664639 TCAGCAACTT
51664649 TTTCTTCTTTAGCAACAAC
1 TTTCTTCTTTAGCAACAAC
*
51664668 TTTC-ACTTTAGCAACAA-
1 TTTCTTCTTTAGCAACAAC
51664685 TTTCTTCTT
1 TTTCTTCTT
51664694 CTACAACATC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 4 0.17
18 15 0.65
19 4 0.17
ACGTcount: A:0.24, C:0.24, G:0.04, T:0.47
Consensus pattern (19 bp):
TTTCTTCTTTAGCAACAAC
Found at i:51672964 original size:17 final size:19
Alignment explanation
Indices: 51672939--51672975 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
51672929 AAGCAAAAGA
51672939 ATTTCATA-TTA-TGAGAT
1 ATTTCATATTTAGTGAGAT
*
51672956 ATTTGATATTTAGTGAGAT
1 ATTTCATATTTAGTGAGAT
51672975 A
1 A
51672976 GGGTGAGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 7 0.41
18 3 0.18
19 7 0.41
ACGTcount: A:0.35, C:0.03, G:0.16, T:0.46
Consensus pattern (19 bp):
ATTTCATATTTAGTGAGAT
Found at i:51674756 original size:25 final size:25
Alignment explanation
Indices: 51674710--51674757 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
51674700 CTTTCTTTGA
*
51674710 TAGTATATCTTGAAACTGCTATAGG
1 TAGTATATCTTGAAACTACTATAGG
*
51674735 TAGTATATAC-TGAGACTACTATA
1 TAGTATAT-CTTGAAACTACTATA
51674758 AATAGACTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.35
Consensus pattern (25 bp):
TAGTATATCTTGAAACTACTATAGG
Found at i:51681286 original size:18 final size:18
Alignment explanation
Indices: 51681265--51681300 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
51681255 GTTTTGAAAT
51681265 TGAATAATGATTTGTAAA
1 TGAATAATGATTTGTAAA
*
51681283 TGAATAATGTTTTGTAAA
1 TGAATAATGATTTGTAAA
51681301 CGAACGTCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.42
Consensus pattern (18 bp):
TGAATAATGATTTGTAAA
Found at i:51688715 original size:28 final size:28
Alignment explanation
Indices: 51688674--51688770 Score: 151
Period size: 28 Copynumber: 3.5 Consensus size: 28
51688664 CTATGCAGTA
*
51688674 ACAGT-ACAGTGTGGGCCTTAGCCCGAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
*
51688701 ATAGTAACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
*
51688729 ACAGTAACAGTGTGGGCCTTAGCTCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
*
51688757 ACAGTAACCGTGTG
1 ACAGTAACAGTGTG
51688771 ATAATGCAAC
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
27 4 0.06
28 60 0.94
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (28 bp):
ACAGTAACAGTGTGGGCCTTAGCCCAAT
Found at i:51689167 original size:27 final size:26
Alignment explanation
Indices: 51689109--51689239 Score: 113
Period size: 27 Copynumber: 4.9 Consensus size: 26
51689099 TATAACAATC
* *
51689109 ATTTTACCCTCTGGA-GGTATTTCGAT
1 ATTTTACCCT-TCGAGGGTATTTCGTT
51689135 AGTTTTACCCTTCGAGGGTATTTCAGTT
1 A-TTTTACCCTTCGAGGGTATTTC-GTT
* * *
51689163 ATTTTATCCTTTG-GGAGTATTTCGGTC
1 ATTTTACCCTTCGAGG-GTATTTC-GTT
* *
51689190 ATTTTACCCTTCAAGGTTATTTCGATT
1 ATTTTACCCTTCGAGGGTATTTCG-TT
* *
51689217 ATTTTACCTTTTGAGGGTATTTC
1 ATTTTACCCTTCGAGGGTATTTC
51689240 AGTCATTTAT
Statistics
Matches: 84, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
26 7 0.08
27 72 0.86
28 5 0.06
ACGTcount: A:0.18, C:0.17, G:0.18, T:0.47
Consensus pattern (26 bp):
ATTTTACCCTTCGAGGGTATTTCGTT
Found at i:51689237 original size:54 final size:53
Alignment explanation
Indices: 51689109--51689247 Score: 149
Period size: 54 Copynumber: 2.6 Consensus size: 53
51689099 TATAACAATC
* * * *
51689109 ATTTTACCCTCTGGAGGTATTTCGAT-AGTTTTACCCTTCGAGGGTATTTCAGTT
1 ATTTTATCCTTTGG-GGTATTTCGGTCA-TTTTACCCTTCAAGGGTATTTCAGTT
*
51689163 ATTTTATCCTTTGGGAGTATTTCGGTCATTTTACCCTTCAAGGTTATTTC-GATT
1 ATTTTATCCTTTGGG-GTATTTCGGTCATTTTACCCTTCAAGGGTATTTCAG-TT
*
51689217 ATTTTA-CCTTTTGAGGGTATTTCAGTCATTT
1 ATTTTATCC-TTTG-GGGTATTTCGGTCATTT
51689248 ATTAACCGCT
Statistics
Matches: 74, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
53 4 0.05
54 67 0.91
55 3 0.04
ACGTcount: A:0.19, C:0.17, G:0.18, T:0.47
Consensus pattern (53 bp):
ATTTTATCCTTTGGGGTATTTCGGTCATTTTACCCTTCAAGGGTATTTCAGTT
Found at i:51693163 original size:16 final size:17
Alignment explanation
Indices: 51693121--51693167 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
51693111 CATGCAAAGT
51693121 ATAACATATATATACGTAC
1 ATAA-ATATATA-ACGTAC
* *
51693140 ATATATATATAAGGTA-
1 ATAAATATATAACGTAC
51693156 ATAAATATATAA
1 ATAAATATATAA
51693168 ATCATAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 11 0.44
17 4 0.16
18 7 0.28
19 3 0.12
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.34
Consensus pattern (17 bp):
ATAAATATATAACGTAC
Found at i:51694884 original size:44 final size:43
Alignment explanation
Indices: 51694738--51695459 Score: 202
Period size: 44 Copynumber: 16.7 Consensus size: 43
51694728 TTTTAAACCA
* * * * *
51694738 CTCCACTACAACTTCAGGAAGATAGGA-TTATCGACTTTAATCTG
1 CTCCACTACAACTTCAGGGAGATAAGACTT-GCCAC-TTAGTCTG
* *
51694782 CTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTG
1 CTCCACTACAACTTCAGGGAGATAAGACTTGCCA-CTT-AGTCTG
51694827 C-CTCACTACAACTTCA-GGAGGATAAGACTTGCCCACTTAGTCTG
1 CTC-CACTACAACTTCAGGGA-GATAAGACTTG-CCACTTAGTCTG
* * * **
51694871 CTCCACTGCAACTTTAGGGAGATAAGACTAG--A-TGCGATCTG
1 CTCCACTACAACTTCAGGGAGATAAGACTTGCCACTTAG-TCTG
* * * *** * *
51694912 CT-CTCTACAACTTCAGAGAGATAAGATCTAAG-GTTTTAATCCG
1 CTCCACTACAACTTCAGGGAGATAAGA-CT-TGCCACTTAGTCTG
*** ** * * * *
51694955 CT-CACTACAACTTCAACAAGATTGGATTATCGGC-TTTAATCTG
1 CTCCACTACAACTTCAGGGAGATAAGACT-T-GCCACTTAGTCTG
** *
51694998 CTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGG
1 CTCCACTACAACTTCAGGGAGATAAGACTTGCCA-CTT-AGTCT-G
* * * ** *
51695044 CT-CACTGCAACTTCA-AGAGGATAAGACTAGATAC-GA-TCTG
1 CTCCACTACAACTTCAGGGA-GATAAGACTTGCCACTTAGTCTG
* * * * *** * **
51695084 CT-CTCTGCAACTTCAGAGAGATAAGATTTAAG-GTTTTAATCCA
1 CTCCACTACAACTTCAGGGAGATAAGACTT--GCCACTTAGTCTG
* * * * * *
51695127 CT-CACTGCAACTTCAGCGAGATAGGA-TTATCGACTTTAATCTG
1 CTCCACTACAACTTCAGGGAGATAAGACTT-GCCAC-TTAGTCTG
* * *
51695170 CTCCACTGCAACTTCAGGGAGATAAGACTTTCCATCTTCAGTCTA
1 CTCCACTACAACTTCAGGGAGATAAGACTTGCCA-CTT-AGTCTG
* ** *
51695215 C-CTCACTACAACTTCA-GGAGGATAAGACTAGATAC-GA-TCTG
1 CTC-CACTACAACTTCAGGGA-GATAAGACTTGCCACTTAGTCTG
** * * * ****** * *
51695256 CT-TTCTGCAACTTCAGAGAAATAAGATCTAAAGTTTTAATCCG
1 CTCCACTACAACTTCAGGGAGATAAGA-CTTGCCACTTAGTCTG
* * * * *
51695299 CT-CACTGCAACTTCAGCGAGATAGGA-TTACCGACTTTAATCTG
1 CTCCACTACAACTTCAGGGAGATAAGACTTGCC-AC-TTAGTCTG
* * *
51695342 CTCTACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTG
1 CTCCACTACAACTTCAGGGAGATAAGACTTGCCA-CTT-AGTCTG
* * *
51695387 C-CTCACTGCAACTTTA-GGAGGATAAGACTTGCCTACTTAGTTTG
1 CTC-CACTACAACTTCAGGGA-GATAAGACTTGCC-ACTTAGTCTG
51695431 CTCCACTACAACTTCAGGGAGATAAGACT
1 CTCCACTACAACTTCAGGGAGATAAGACT
51695460 CGATCTGTTT
Statistics
Matches: 517, Mismatches: 111, Indels: 100
0.71 0.15 0.14
Matches are distributed among these distances:
40 61 0.12
41 28 0.05
42 14 0.03
43 101 0.20
44 171 0.33
45 135 0.26
46 7 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (43 bp):
CTCCACTACAACTTCAGGGAGATAAGACTTGCCACTTAGTCTG
Found at i:51694967 original size:43 final size:43
Alignment explanation
Indices: 51694907--51695369 Score: 216
Period size: 43 Copynumber: 10.7 Consensus size: 43
51694897 ACTAGATGCG
* *
51694907 ATCTGCTCTCTACAACTTCAGAGAGATAAGATCTAAGGTTTTA
1 ATCTGCTCACTGCAACTTCAGAGAGATAAGATCTAAGGTTTTA
* * * ** * *
51694950 ATCCGCTCACTACAACTTCA-ACAAGATTGGAT-TATCGGCTTTA
1 ATCTGCTCACTGCAACTTCAGA-GAGATAAGATCTA-AGGTTTTA
* * * **** *
51694993 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCA
1 ATCTGCT-CACTGCAACTTCAGAGAGATAAGATCTAAGGT-TTTA
* * ***
51695038 GTCTGGCTCACTGCAACTTCA-AGAGGATAAGA-CT-A-GATACG
1 ATCT-GCTCACTGCAACTTCAGAGA-GATAAGATCTAAGGTTTTA
* *
51695079 ATCTGCTCTCTGCAACTTCAGAGAGATAAGATTTAAGGTTTTA
1 ATCTGCTCACTGCAACTTCAGAGAGATAAGATCTAAGGTTTTA
** * * * **
51695122 ATCCACTCACTGCAACTTCAGCGAGATAGGAT-TATCGACTTTA
1 ATCTGCTCACTGCAACTTCAGAGAGATAAGATCTA-AGGTTTTA
* * * *
51695165 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTTCCA--TCTTCA
1 ATCTGCT-CACTGCAACTTCAGAGAGATAAGA-TCT-AAGGT-TTTA
* * * * ***
51695210 GTCTACCTCACTACAACTTCAG-GAGGATAAGA-CT-A-GATACG
1 ATCT-GCTCACTGCAACTTCAGAGA-GATAAGATCTAAGGTTTTA
** * *
51695251 ATCTGCTTTCTGCAACTTCAGAGAAATAAGATCTAAAGTTTTA
1 ATCTGCTCACTGCAACTTCAGAGAGATAAGATCTAAGGTTTTA
* * * * **
51695294 ATCCGCTCACTGCAACTTCAGCGAGATAGGAT-TACCGACTTTA
1 ATCTGCTCACTGCAACTTCAGAGAGATAAGATCTA-AGGTTTTA
*
51695337 ATCTGCTCTACTGCAACTTCAGGGAGATAAGAT
1 ATCTGCTC-ACTGCAACTTCAGAGAGATAAGAT
51695370 TTGCCATCTT
Statistics
Matches: 312, Mismatches: 81, Indels: 53
0.70 0.18 0.12
Matches are distributed among these distances:
40 41 0.13
41 19 0.06
42 9 0.03
43 116 0.37
44 68 0.22
45 53 0.17
46 6 0.02
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (43 bp):
ATCTGCTCACTGCAACTTCAGAGAGATAAGATCTAAGGTTTTA
Found at i:51695035 original size:216 final size:217
Alignment explanation
Indices: 51694660--51695071 Score: 664
Period size: 216 Copynumber: 1.9 Consensus size: 217
51694650 CTACTCCTGG
* *
51694660 TGCAACTTCAGGGAGATTAGACTAAATACGATCTGCTCTCTACAACTTCGGAGAGATAAGATCCA
1 TGCAACTTCAGGGAGATAAGACTAAATACGATCTGCTCTCTACAACTTCAGAGAGATAAGATCCA
* **
51694725 ATGTTTTAAACCACTCCACTACAACTTCAGGAAGATAGGATTATCGACTTTAATCTGCTCCACTG
66 AGGTTTTAAACCACTCCACTACAACTTCAACAAGATAGGATTATCGACTTTAATCTGCTCCACTG
*
51694790 CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGAC
131 CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAAGAGGATAAGAC
51694855 TTGCCCACTTAGTCTGCTCCAC
196 TTGCCCACTTAGTCTGCTCCAC
* * * *
51694877 TGCAACTTTAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTA
1 TGCAACTTCAGGGAGATAAGACTAAATACGATCTGCTCTCTACAACTTCAGAGAGATAAGATCCA
* * * *
51694942 AGGTTTTAATCCGCT-CACTACAACTTCAACAAGATTGGATTATCGGCTTTAATCTGCTCCACTG
66 AGGTTTTAAACCACTCCACTACAACTTCAACAAGATAGGATTATCGACTTTAATCTGCTCCACTG
* * *
51695006 TAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGGCTCACTGCAACTTCAAGAGGATAAGAC
131 CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAAGAGGATAAGAC
51695071 T
196 T
51695072 AGATACGATC
Statistics
Matches: 178, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
216 107 0.60
217 71 0.40
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (217 bp):
TGCAACTTCAGGGAGATAAGACTAAATACGATCTGCTCTCTACAACTTCAGAGAGATAAGATCCA
AGGTTTTAAACCACTCCACTACAACTTCAACAAGATAGGATTATCGACTTTAATCTGCTCCACTG
CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAAGAGGATAAGAC
TTGCCCACTTAGTCTGCTCCAC
Found at i:51695056 original size:172 final size:172
Alignment explanation
Indices: 51694773--51695415 Score: 888
Period size: 172 Copynumber: 3.7 Consensus size: 172
51694763 GATTATCGAC
* * * * * * *
51694773 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-TGCCATCTTCAGTCTGC-CTCACTAC
1 TTTAATCCGCT-CACTGCAACTTCAGCGAGATAGGATTAT-CGA-CTTTAATCTGCTC-CACTGC
* *
51694836 AACTTCA-GGAGGATAAGACTTGCCCA-CTT-AGTCTG-CTCCACTGCAACTTTAGG-GAGATAA
62 AACTTCAGGGA-GATAAGATTTG-CCATCTTCAGTCTGCCT-CACTGCAACTTCAGGAG-GATAA
* *
51694896 GACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTAAGGT
123 GACTAGATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGT
* * * * * *
51694946 TTTAATCCGCTCACTACAACTTCAACAAGATTGGATTATCGGCTTTAATCTGCTCCACTGTAACT
1 TTTAATCCGCTCACTGCAACTTCAGCGAGATAGGATTATCGACTTTAATCTGCTCCACTGCAACT
* *
51695011 TCAGGGAGATAAGATTTGCCATCTTCAGTCTGGCTCACTGCAACTTCAAGAGGATAAGACTAGAT
66 TCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTAGAT
*
51695076 ACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATTTAAGGT
131 ACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGT
*
51695118 TTTAATCCACTCACTGCAACTTCAGCGAGATAGGATTATCGACTTTAATCTGCTCCACTGCAACT
1 TTTAATCCGCTCACTGCAACTTCAGCGAGATAGGATTATCGACTTTAATCTGCTCCACTGCAACT
* *
51695183 TCAGGGAGATAAGACTTT-CCATCTTCAGTCTACCTCACTACAACTTCAGGAGGATAAGACTAGA
66 TCAGGGAGATAAGA-TTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTAGA
* * *
51695247 TACGATCTGCTTTCTGCAACTTCAGAGAAATAAGATCTAAAGT
130 TACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGT
* *
51695290 TTTAATCCGCTCACTGCAACTTCAGCGAGATAGGATTACCGACTTTAATCTGCTCTACTGCAACT
1 TTTAATCCGCTCACTGCAACTTCAGCGAGATAGGATTATCGACTTTAATCTGCTCCACTGCAACT
*
51695355 TCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTTAGGAGGATAAGACT
66 TCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACT
51695416 TGCCTACTTA
Statistics
Matches: 421, Mismatches: 40, Indels: 19
0.88 0.08 0.04
Matches are distributed among these distances:
170 3 0.01
171 36 0.09
172 365 0.87
173 17 0.04
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (172 bp):
TTTAATCCGCTCACTGCAACTTCAGCGAGATAGGATTATCGACTTTAATCTGCTCCACTGCAACT
TCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTAGAT
ACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGT
Found at i:51695184 original size:216 final size:217
Alignment explanation
Indices: 51694660--51695185 Score: 562
Period size: 216 Copynumber: 2.4 Consensus size: 217
51694650 CTACTCCTGG
* * * * * ** * * *
51694660 TGCAACTTCAGGGAGATTAGACTAAATACGATCTGCTCTCTACAACTTCGGAGAGATAAGATCCA
1 TGCAACTTCAGAGAGATAAGACTAGATGCAATCCACTCACTACAACTTCAGAGAGATAAGATCTA
* * * **
51694725 ATG-TTTTAAACCACTCCACTACAACTTCAGGAAGATAGGATTATCGACTTTAATCTGCTCCACT
66 A-GACTTTAATCCGCTCCACTACAACTTCAACAAGATAGGATTATCGACTTTAATCTGCTCCACT
*
51694789 GCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGA
130 GCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAAGAGGATAAGA
* * *
51694854 CTTGCCCACTTAGTCTGCTCCAC
195 CTAGCACACTGAGTCTGCTCCAC
* * * ** *
51694877 TGCAACTTTAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTA
1 TGCAACTTCAGAGAGATAAGACTAGATGCAATCCACTCACTACAACTTCAGAGAGATAAGATCTA
** * *
51694942 AGGTTTTAATCCGCT-CACTACAACTTCAACAAGATTGGATTATCGGCTTTAATCTGCTCCACTG
66 AGACTTTAATCCGCTCCACTACAACTTCAACAAGATAGGATTATCGACTTTAATCTGCTCCACTG
* * *
51695006 TAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGGCTCACTGCAACTTCAAGAGGATAAGAC
131 CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAAGAGGATAAGAC
* *
51695071 TAG-ATAC-GA-TCTGCT-CTC
196 TAGCACACTGAGTCTGCTCCAC
* * ** * * *
51695089 TGCAACTTCAGAGAGATAAGATTTAAGGTTTTAATCCACTCACTGCAACTTCAGCGAGATAGGAT
1 TGCAACTTCAGAGAGATAAGA-CT-A-GATGCAATCCACTCACTACAACTTCAGAGAGATAAGAT
* * *
51695154 -TATCGACTTTAATCTGCTCCACTGCAACTTCA
63 CTA-AGACTTTAATCCGCTCCACTACAACTTCA
51695186 GGGAGATAAG
Statistics
Matches: 264, Mismatches: 39, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
212 21 0.08
213 7 0.03
214 4 0.02
215 41 0.16
216 121 0.46
217 70 0.27
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (217 bp):
TGCAACTTCAGAGAGATAAGACTAGATGCAATCCACTCACTACAACTTCAGAGAGATAAGATCTA
AGACTTTAATCCGCTCCACTACAACTTCAACAAGATAGGATTATCGACTTTAATCTGCTCCACTG
CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAAGAGGATAAGAC
TAGCACACTGAGTCTGCTCCAC
Found at i:51695450 original size:89 final size:86
Alignment explanation
Indices: 51694993--51695457 Score: 355
Period size: 89 Copynumber: 5.4 Consensus size: 86
51694983 ATCGGCTTTA
* *
51694993 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGGCTCACTGCAACTTC
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT-CCATCTTCAGTCTGCCTCACTGCAACTTC
* * * *
51695058 AAGAGGATAAGACTAGATAC-G
65 AGGAGGATAAGACTTGCTACTT
* * * * *
51695079 ATCTGCT-CTCTGCAACTTCAGAGAGATAAGATTT-AAGGT-TTTAATC--CACTCACTGCAACT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTCCA--TCTTCAGTCTGC-CTCACTGCAACT
* * *
51695139 TCAGCGA-GATAGGA-TTATCGACTTT
63 TCAG-GAGGATAAGACTT-GCTAC-TT
* *
51695164 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTTCCATCTTCAGTCTACCTCACTACAACTT
1 -ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTTCCATCTTCAGTCTGCCTCACTGCAACTT
* * *
51695229 CAGGAGGATAAGACTAGATAC-G
64 CAGGAGGATAAGACTTGCTACTT
** * * * ** * * *
51695251 ATCTGCT-TTCTGCAACTTCAGAGAAATAAGATCTAAAGT-TTTAATCCG-CTCACTGCAACTTC
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTCCA-TCTTCAGTCTGCCTCACTGCAACTTC
* * *
51695313 AGCGA-GATAGGA-TTACCGACTTT
65 AG-GAGGATAAGACTT-GCTAC-TT
*
51695336 AATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTT
1 -ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT-CCATCTTCAGTCTGCCTCACTGCAACTT
*
51695401 TAGGAGGATAAGACTTGCCTACTT
64 CAGGAGGATAAGACTTG-CTACTT
* *
51695425 AGTTTGCTCCACTACAACTTCAGGGAGATAAGA
1 A-TCTGCTCCACTGCAACTTCAGGGAGATAAGA
51695458 CTCGATCTGT
Statistics
Matches: 289, Mismatches: 60, Indels: 57
0.71 0.15 0.14
Matches are distributed among these distances:
82 2 0.01
83 47 0.16
84 17 0.06
85 46 0.16
86 28 0.10
87 47 0.16
88 20 0.07
89 75 0.26
90 7 0.02
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (86 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTCCATCTTCAGTCTGCCTCACTGCAACTTCA
GGAGGATAAGACTTGCTACTT
Found at i:51703695 original size:19 final size:20
Alignment explanation
Indices: 51703658--51703695 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
51703648 TATAATAAAA
*
51703658 CTTTACTATAAATTAAATTC
1 CTTTACTATAAAGTAAATTC
*
51703678 CTTTA-TATAAAGTGAATT
1 CTTTACTATAAAGTAAATT
51703696 ACAAATAAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (20 bp):
CTTTACTATAAAGTAAATTC
Found at i:51707210 original size:23 final size:23
Alignment explanation
Indices: 51707162--51707226 Score: 62
Period size: 23 Copynumber: 2.9 Consensus size: 23
51707152 ATATCGCAAT
* *
51707162 AACAAAT-AACAATAATAAATAC
1 AACAAATAAATAAAAATAAATAC
* **
51707184 AACAATTGTATAAAAATAAGATA-
1 AACAAATAAATAAAAATAA-ATAC
51707207 AACAAATAAATAAAAATAAA
1 AACAAATAAATAAAAATAAA
51707227 AATAAAAAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
22 7 0.21
23 24 0.71
24 3 0.09
ACGTcount: A:0.69, C:0.08, G:0.03, T:0.20
Consensus pattern (23 bp):
AACAAATAAATAAAAATAAATAC
Found at i:51707308 original size:16 final size:16
Alignment explanation
Indices: 51707270--51707335 Score: 55
Period size: 16 Copynumber: 4.2 Consensus size: 16
51707260 ATAAATGAGG
* **
51707270 AAAATAAAAAAATGAA
1 AAAATAAATAAACAAA
* *
51707286 AACATAAATCAACAAA
1 AAAATAAATAAACAAA
*
51707302 CAAATAAATAAACAAA
1 AAAATAAATAAACAAA
*
51707318 AAAAT--ATAAAGAAA
1 AAAATAAATAAACAAA
51707332 AAAA
1 AAAA
51707336 AAGGTGCATA
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
14 12 0.30
16 28 0.70
ACGTcount: A:0.77, C:0.08, G:0.03, T:0.12
Consensus pattern (16 bp):
AAAATAAATAAACAAA
Found at i:51707514 original size:16 final size:17
Alignment explanation
Indices: 51707472--51707518 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
51707462 GATAGAAAGT
51707472 ATAACATATATATACGTAC
1 ATAA-ATATATA-ACGTAC
* *
51707491 ATATATATATAAGGTA-
1 ATAAATATATAACGTAC
51707507 ATAAATATATAA
1 ATAAATATATAA
51707519 ATCATAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 11 0.44
17 4 0.16
18 7 0.28
19 3 0.12
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.34
Consensus pattern (17 bp):
ATAAATATATAACGTAC
Done.