Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 203 of 226
Found at i:60760830 original size:23 final size:26
Alignment explanation
Indices: 60760799--60760849 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
60760789 GTGTTCACCT
60760799 TATACATA-TTA-A-TCATGAATTAA
1 TATACATATTTACATTCATGAATTAA
*
60760822 TATATATATTTACATTTCATGAATTAA
1 TATACATATTTACA-TTCATGAATTAA
60760849 T
1 T
60760850 CATCAACTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 7 0.30
24 3 0.13
25 1 0.04
27 12 0.52
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.45
Consensus pattern (26 bp):
TATACATATTTACATTCATGAATTAA
Found at i:60762013 original size:7 final size:7
Alignment explanation
Indices: 60761979--60762012 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
60761969 CCAAAACCAA
60761979 AACCATT
1 AACCATT
60761986 AACCATT
1 AACCATT
60761993 AACCATT
1 AACCATT
*
60762000 AACCATC
1 AACCATT
60762007 AACCAT
1 AACCAT
60762013 CTTACATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (7 bp):
AACCATT
Found at i:60764555 original size:5 final size:5
Alignment explanation
Indices: 60764545--60764575 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
60764535 CCATTCATTG
60764545 TACTA TACTA TACTA TACTA TACTA TACTA T
1 TACTA TACTA TACTA TACTA TACTA TACTA T
60764576 CACCATTATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (5 bp):
TACTA
Found at i:60768077 original size:73 final size:73
Alignment explanation
Indices: 60767958--60768215 Score: 473
Period size: 73 Copynumber: 3.5 Consensus size: 73
60767948 ACAACTTGAC
60767958 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
60768023 CACTAACA
66 CACTAACA
* * *
60768031 AACTTAGTTAGAATAAAACTAAGTTTTATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
60768096 CACTAACA
66 CACTAACA
60768104 AACTTAGTTGGAATACAACTAAGTTT-ATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
60768168 CACTAACA
66 CACTAACA
*
60768176 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
60768216 AATAATAATA
Statistics
Matches: 178, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
72 71 0.40
73 107 0.60
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:60772550 original size:73 final size:73
Alignment explanation
Indices: 60772463--60772648 Score: 345
Period size: 73 Copynumber: 2.5 Consensus size: 73
60772453 ACAACTTGAC
60772463 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
60772528 CACTAACA
66 CACTAACA
* *
60772536 AACTTAGTTGGAATACAACTAAGTTTTATCATTACATCCACTTAAAATAAATCACCACTTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
60772601 CACTAACA
66 CACTAACA
*
60772609 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
60772649 AATAATAATA
Statistics
Matches: 109, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 109 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:60774831 original size:25 final size:25
Alignment explanation
Indices: 60774803--60774852 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
60774793 TTTTACCTAT
60774803 TGTATTGATTTAATCATAATTTAAA
1 TGTATTGATTTAATCATAATTTAAA
60774828 TGTATTGATTTAATCATAATTTAAA
1 TGTATTGATTTAATCATAATTTAAA
60774853 AGAATTAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (25 bp):
TGTATTGATTTAATCATAATTTAAA
Found at i:60782395 original size:17 final size:17
Alignment explanation
Indices: 60782369--60782409 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
60782359 GATATCTTTA
* *
60782369 AAAATCTTTATAAATAT
1 AAAATATTTATAAAAAT
60782386 AAAATATTTATAAAAAT
1 AAAATATTTATAAAAAT
60782403 ATAAATA
1 A-AAATA
60782410 AAATTATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
AAAATATTTATAAAAAT
Found at i:60782559 original size:38 final size:38
Alignment explanation
Indices: 60782480--60782552 Score: 92
Period size: 38 Copynumber: 1.9 Consensus size: 38
60782470 AAAATTTTAA
* ** * * *
60782480 AAAATTATTAGAATTTGTAAAATATTGTAGAAAATTAT
1 AAAATCATTAGAAACTGTAAAAGATTGTAAAAAAATAT
60782518 AAAATCATTAGAAACTGTAAAAGATTGTAAAAAAA
1 AAAATCATTAGAAACTGTAAAAGATTGTAAAAAAA
60782553 ATTAAAAATT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 29 1.00
ACGTcount: A:0.55, C:0.03, G:0.11, T:0.32
Consensus pattern (38 bp):
AAAATCATTAGAAACTGTAAAAGATTGTAAAAAAATAT
Found at i:60783298 original size:18 final size:18
Alignment explanation
Indices: 60783275--60783309 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
60783265 TTAGTATTGA
*
60783275 TTTTAAAAATTAAAAAAC
1 TTTTAAAAAATAAAAAAC
60783293 TTTTAAAAAATAAAAAA
1 TTTTAAAAAATAAAAAA
60783310 AATAAAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (18 bp):
TTTTAAAAAATAAAAAAC
Found at i:60783310 original size:19 final size:18
Alignment explanation
Indices: 60783275--60783310 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
60783265 TTAGTATTGA
*
60783275 TTTTAAAAATTAAAAAAC
1 TTTTAAAAATAAAAAAAC
60783293 TTTTAAAAAATAAAAAAA
1 TTTT-AAAAATAAAAAAA
60783311 ATAAAAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (18 bp):
TTTTAAAAATAAAAAAAC
Found at i:60783484 original size:17 final size:16
Alignment explanation
Indices: 60783462--60783514 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 16
60783452 AATCTACAAG
60783462 ACTTAAACCAAATTCAA
1 ACTTAAACC-AATTCAA
*
60783479 ACTTAAACC--TACAA
1 ACTTAAACCAATTCAA
60783493 GACTTAAACCATATTCAA
1 -ACTTAAACCA-ATTCAA
60783511 ACTT
1 ACTT
60783515 TTCCATCTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
14 4 0.13
15 9 0.30
17 13 0.43
18 4 0.13
ACGTcount: A:0.47, C:0.25, G:0.02, T:0.26
Consensus pattern (16 bp):
ACTTAAACCAATTCAA
Found at i:60800436 original size:43 final size:43
Alignment explanation
Indices: 60800370--60800606 Score: 227
Period size: 43 Copynumber: 5.9 Consensus size: 43
60800360 GTGTCGCTAA
* *
60800370 CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCATGAC
1 CTTTAGCGACGCTTTTACCACAAACGCCGCTAAAAACCATGAC
* *
60800413 CTTTAGCGACGCTTTTTCGACAAACGCCGCTAAAAACCATGAC
1 CTTTAGCGACGCTTTTACCACAAACGCCGCTAAAAACCATGAC
*
60800456 CTTTAGCGACGCTTTTCCCACAAACGCCGCT---AA--A--AC
1 CTTTAGCGACGCTTTTACCACAAACGCCGCTAAAAACCATGAC
*
60800492 CTTTAGCGGCGCTTTTACCACAAACGCCGCT---AA--A--AC
1 CTTTAGCGACGCTTTTACCACAAACGCCGCTAAAAACCATGAC
* * * * *
60800528 CTTTAGCGGCACTTTTCCCACAAGCGCCGCTAAAGAA-CA-AAC
1 CTTTAGCGACGCTTTTACCACAAACGCCGCTAAA-AACCATGAC
* * *
60800570 CTTTAGCGACGCTTCTAGCAAAAACGCCGCTAAAAAC
1 CTTTAGCGACGCTTTTACCACAAACGCCGCTAAAAAC
60800607 ATAATCTTTA
Statistics
Matches: 169, Mismatches: 18, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
36 64 0.38
38 1 0.01
40 4 0.02
41 3 0.02
42 29 0.17
43 68 0.40
ACGTcount: A:0.30, C:0.32, G:0.16, T:0.21
Consensus pattern (43 bp):
CTTTAGCGACGCTTTTACCACAAACGCCGCTAAAAACCATGAC
Found at i:60800505 original size:36 final size:36
Alignment explanation
Indices: 60800454--60800561 Score: 180
Period size: 36 Copynumber: 3.0 Consensus size: 36
60800444 AAAAACCATG
*
60800454 ACCTTTAGCGACGCTTTTCCCACAAACGCCGCTAAA
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAA
*
60800490 ACCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAA
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAA
* *
60800526 ACCTTTAGCGGCACTTTTCCCACAAGCGCCGCTAAA
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAA
60800562 GAACAAACCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 67 1.00
ACGTcount: A:0.27, C:0.35, G:0.16, T:0.22
Consensus pattern (36 bp):
ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAA
Found at i:60806020 original size:41 final size:41
Alignment explanation
Indices: 60805960--60806242 Score: 494
Period size: 41 Copynumber: 6.9 Consensus size: 41
60805950 TATGATAAAT
*
60805960 CTGAGCATTAGCGGCGCTTCTTCAAAAATGCCGCTAAAGCC
1 CTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCC
* * *
60806001 TTGAGCATTAGCGGTGCTTCTTCAAAAACGCCACTAAAGCC
1 CTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCC
60806042 CTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCC
1 CTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCC
60806083 CTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCC
1 CTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCC
* *
60806124 CTGAGCATTAGCGTCGCTTCTTCAAAAACGCCGCTAAAACC
1 CTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCC
*
60806165 CTGAGCATTAGCGGCGCTTCTTTAAAAACGCCGCTAAAGCC
1 CTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCC
*
60806206 CTGAGCATTAGCGGCGCTTCTTCAAAAACGCCACTAA
1 CTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAA
60806243 TGCTCATTTT
Statistics
Matches: 228, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 228 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (41 bp):
CTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCC
Found at i:60806282 original size:39 final size:39
Alignment explanation
Indices: 60806213--60806339 Score: 137
Period size: 41 Copynumber: 3.2 Consensus size: 39
60806203 GCCCTGAGCA
* * * * *
60806213 TTAGCGGCGCTTCTTCAAAAACGCCACTAATGCTCATTT
1 TTAGCGGCGTTTTTTTAAAAGCGCCGCTAATGCTCATTT
* *
60806252 TTAGCGGCGTTTTTTTAAAAGCGCCGCTAATACTCGATCT
1 TTAGCGGCGTTTTTTTAAAAGCGCCGCTAATGCTC-ATTT
* * *
60806292 TTAGTGGCATTTTTTTTAAAAGCGCCGCTAATGCTTGATTT
1 TTAGCGGC-GTTTTTTTAAAAGCGCCGCTAATGC-TCATTT
60806333 TTAGCGG
1 TTAGCGG
60806340 TATTTTTTAT
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 29 0.40
40 10 0.14
41 32 0.44
42 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (39 bp):
TTAGCGGCGTTTTTTTAAAAGCGCCGCTAATGCTCATTT
Found at i:60809377 original size:16 final size:16
Alignment explanation
Indices: 60809343--60809395 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
60809333 ATGGCATCAG
60809343 TCATGCAATACTCAAT
1 TCATGCAATACTCAAT
*
60809359 TCATG-AATACATCATT
1 TCATGCAATAC-TCAAT
* * *
60809375 TCATACCATACTCAAA
1 TCATGCAATACTCAAT
60809391 TCATG
1 TCATG
60809396 AGTATATAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
15 5 0.17
16 20 0.69
17 4 0.14
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.32
Consensus pattern (16 bp):
TCATGCAATACTCAAT
Found at i:60809635 original size:40 final size:41
Alignment explanation
Indices: 60809580--60809714 Score: 163
Period size: 41 Copynumber: 3.4 Consensus size: 41
60809570 GCTAGTTTGG
* *
60809580 CACCCAGTGCCTCATCGGAT-AATTCGAAGTAGTAAATTGA
1 CACCCAGTGTCTCATCGGATAAATCCGAAGTAGTAAATTGA
*
60809620 CACCCAGTGTCTCATCGAATAAATCCGAAGTAGTAAATTGA
1 CACCCAGTGTCTCATCGGATAAATCCGAAGTAGTAAATTGA
* * * *
60809661 CACCAAGTGTCTCATCGGTTAAA-CTG-A--AGTAAATTGG
1 CACCCAGTGTCTCATCGGATAAATCCGAAGTAGTAAATTGA
*
60809698 CACCCAGTGCCTCATCG
1 CACCCAGTGTCTCATCG
60809715 ACTCAAAATC
Statistics
Matches: 84, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
37 24 0.29
39 1 0.01
40 20 0.24
41 39 0.46
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.24
Consensus pattern (41 bp):
CACCCAGTGTCTCATCGGATAAATCCGAAGTAGTAAATTGA
Found at i:60810616 original size:15 final size:16
Alignment explanation
Indices: 60810596--60810625 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
60810586 GCCGTGGCTT
60810596 TTTTTCTTT-TTTCTC
1 TTTTTCTTTCTTTCTC
60810611 TTTTTCTTTCTTTCT
1 TTTTTCTTTCTTTCT
60810626 TTCCTGTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTCTTTCTTTCTC
Found at i:60810635 original size:19 final size:19
Alignment explanation
Indices: 60810598--60810635 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
60810588 CGTGGCTTTT
*
60810598 TTTCTTTTTTCTCTTTTTC
1 TTTCTTTTTTCTCTGTTTC
60810617 TTTCTTTCTTTC-CTGTTTC
1 TTTCTTT-TTTCTCTGTTTC
60810636 GTTTTGCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.00, C:0.24, G:0.03, T:0.74
Consensus pattern (19 bp):
TTTCTTTTTTCTCTGTTTC
Found at i:60812875 original size:18 final size:18
Alignment explanation
Indices: 60812852--60812895 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
60812842 TTAATAGGGT
*
60812852 ATTTCAATTC-ATAATTCA
1 ATTTCAATTCAAT-ATACA
*
60812870 ATTTCAAATCAATATACA
1 ATTTCAATTCAATATACA
60812888 ATTTCAAT
1 ATTTCAAT
60812896 CTATTCCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 20 0.91
19 2 0.09
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (18 bp):
ATTTCAATTCAATATACA
Found at i:60813179 original size:13 final size:14
Alignment explanation
Indices: 60813160--60813215 Score: 58
Period size: 14 Copynumber: 3.8 Consensus size: 14
60813150 ATTTCCCCTT
60813160 TCTTTTTCTTTCTC
1 TCTTTTTCTTTCTC
*
60813174 TCTTTTTCGTTTCAC
1 TCTTTTTC-TTTCTC
* *
60813189 TTCTCTGTTCTTTCTT
1 -TCT-TTTTCTTTCTC
60813205 TCTTTTTCTTT
1 TCTTTTTCTTT
60813216 TTTCTTTTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
14 15 0.44
15 8 0.24
16 7 0.21
17 4 0.12
ACGTcount: A:0.02, C:0.25, G:0.04, T:0.70
Consensus pattern (14 bp):
TCTTTTTCTTTCTC
Found at i:60813213 original size:21 final size:22
Alignment explanation
Indices: 60813189--60813232 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
60813179 TTCGTTTCAC
*
60813189 TTCTCTGTTC-TTTCTTTCTTT
1 TTCTCTGTTCTTTTATTTCTTT
* *
60813210 TTCTTTTTTCTTTTATTTCTTT
1 TTCTCTGTTCTTTTATTTCTTT
60813232 T
1 T
60813233 ACTTTCTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.77
Consensus pattern (22 bp):
TTCTCTGTTCTTTTATTTCTTT
Found at i:60813243 original size:10 final size:9
Alignment explanation
Indices: 60813199--60813246 Score: 55
Period size: 9 Copynumber: 5.3 Consensus size: 9
60813189 TTCTCTGTTC
*
60813199 TTTCTTTCTT
1 TTTCTTT-TA
60813209 TTTC-TTT-
1 TTTCTTTTA
60813216 TTTCTTTTA
1 TTTCTTTTA
60813225 TTTCTTTTA
1 TTTCTTTTA
60813234 CTTTCTTTTA
1 -TTTCTTTTA
60813244 TTT
1 TTT
60813247 TATGTTATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
7 4 0.11
8 4 0.11
9 14 0.40
10 13 0.37
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTCTTTTA
Found at i:60814129 original size:209 final size:207
Alignment explanation
Indices: 60813745--60814144 Score: 536
Period size: 209 Copynumber: 1.9 Consensus size: 207
60813735 TAGAATAAGG
* **
60813745 TTACTACTCTGCTTCTACTTGACATTAATTAGAATAAGGTTTTCAACCTATAAATAGATGTAGTT
1 TTACTACTCTGCTTCTACTTGACATTAATTAGAATAAGGTTTTCAACATATAAATAGATGTAGCC
* * * * *
60813810 GAAGCTCCTCTTGTATCATTCGAATTCGACATTAGTGAATTTTCTTCTCCTCTACTCGTGGTTTT
66 GAAACTCCTCTTGTATAATTCGAATTCGACAATAGTGAATTTTCTTCTCCTCTACCCGTAGTTTT
* * * *
60813875 TTCCCGAAAGGGTTTCTATGTAAAATCTGTGTGTTCTTA-TTTTTTTTCTTATTGCTTTGCGATC
131 TTCCCGAAAGGGTTTCCACGTAAAATCTATGTGTTCTTATTTTTTTTTCTTATTACTTTGCGATC
60813939 GTTTTATGCTGC
196 GTTTTATGCTGC
* * * * *
60813951 TTACTACAT-TGCTTCTATTTGATATTGATTAGAATAAGGGTTTTCAATATATAAATATAGATTT
1 TTACTAC-TCTGCTTCTACTTGACATTAATTAGAATAA-GGTTTTCAACATAT-AA-ATAGATGT
* *
60814015 AGCCGAAACTCCTCTTGTATAATTTGAATTCGACAATAGTGAATTTTCTTCTTCTCTACCCGTAG
62 AGCCGAAACTCCTCTTGTATAATTCGAATTCGACAATAGTGAATTTTCTTCTCCTCTACCCGTAG
* * *
60814080 -TTTTTCTCGAAAGGGTTTCCACGTAAAATTTATTTGTTCTTATTTTTTTTTTCTTATTACTTTG
127 TTTTTTCCCGAAAGGGTTTCCACGTAAAATCTATGTGTTCTTA-TTTTTTTTTCTTATTACTTTG
60814144 C
191 C
60814145 AATCATTCTA
Statistics
Matches: 166, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
206 32 0.19
207 13 0.08
208 38 0.23
209 63 0.38
210 20 0.12
ACGTcount: A:0.24, C:0.17, G:0.14, T:0.46
Consensus pattern (207 bp):
TTACTACTCTGCTTCTACTTGACATTAATTAGAATAAGGTTTTCAACATATAAATAGATGTAGCC
GAAACTCCTCTTGTATAATTCGAATTCGACAATAGTGAATTTTCTTCTCCTCTACCCGTAGTTTT
TTCCCGAAAGGGTTTCCACGTAAAATCTATGTGTTCTTATTTTTTTTTCTTATTACTTTGCGATC
GTTTTATGCTGC
Found at i:60826971 original size:20 final size:20
Alignment explanation
Indices: 60826938--60826976 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
60826928 ACAAAACTAA
60826938 TCCCATTGACTAAACAAATCC
1 TCCCATTGACTAAA-AAATCC
60826959 TCCCATT-ACTAAAAAATC
1 TCCCATTGACTAAAAAATC
60826977 TAATACTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 6 0.33
21 7 0.39
ACGTcount: A:0.41, C:0.31, G:0.03, T:0.26
Consensus pattern (20 bp):
TCCCATTGACTAAAAAATCC
Found at i:60829019 original size:8 final size:8
Alignment explanation
Indices: 60829008--60829037 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
60828998 ATGAAAATTT
60829008 TTAAATAA
1 TTAAATAA
60829016 TTAAATAA
1 TTAAATAA
60829024 TTAAATAA
1 TTAAATAA
*
60829032 CTAAAT
1 TTAAAT
60829038 TGTAACTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (8 bp):
TTAAATAA
Found at i:60838866 original size:17 final size:18
Alignment explanation
Indices: 60838852--60838885 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60838842 CAAATTAATT
60838852 TTTAT-TAATTTTTAAAC
1 TTTATATAATTTTTAAAC
*
60838869 TTTATATAATTTATAAA
1 TTTATATAATTTTTAAA
60838886 AATCATCTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTATATAATTTTTAAAC
Found at i:60841075 original size:4 final size:4
Alignment explanation
Indices: 60841066--60841117 Score: 61
Period size: 4 Copynumber: 12.8 Consensus size: 4
60841056 TTCATCGAGC
* *
60841066 ATTT ATTT ATTT ATTC ATTTT ATTT -TATT ATTT ATTT ATTT ATTT ACTT
1 ATTT ATTT ATTT ATTT A-TTT ATTT AT-TT ATTT ATTT ATTT ATTT ATTT
60841115 ATT
1 ATT
60841118 ATTCCTTTGT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
3 1 0.02
4 36 0.88
5 4 0.10
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (4 bp):
ATTT
Found at i:60842273 original size:2 final size:2
Alignment explanation
Indices: 60842266--60842314 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
60842256 TTTCTCGTGT
*
60842266 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
60842308 TC TC TC T
1 TC TC TC T
60842315 AAACAAAGGA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:60844204 original size:352 final size:351
Alignment explanation
Indices: 60843757--60844441 Score: 1352
Period size: 352 Copynumber: 1.9 Consensus size: 351
60843747 TGAAACATGG
60843757 GAAAAAAGTAAGATGATGGTAGCATAAATGACATCAATGAAGTGAGGGCATCACTTTCTAAATTT
1 GAAAAAAGTAAGATGATGGTAGCATAAATGACATCAATGAAGTGAGGGCATCACTTTCTAAATTT
60843822 ATAATCTTTGGTTGCTTTTTGGTGAAAGCAAAATCTGCACTTGACTTGGGGTCAATATTATATAT
66 ATAATCTTTGGTTGCTTTTTGGTGAAAGCAAAATCTGCACTTGACTTGGGGTCAATATTATATAT
60843887 TATCCTTTGTAAATTAGATAAGTAGATGTCATGAAAGAGACAATAGCAATTATTGCTTTCTTTTT
131 TATCCTTTGTAAATTAGATAAGTAGATGTCATGAAAGAGACAATAGCAATTATTGCTTTCTTTTT
60843952 CTTTTGTGGAAAATTTGATCCTAAAAGCAAAGTTACTGCACTCAGTGGGTAAGGAAATTGGGTTA
196 CTTTTGTGGAAAATTTGATCCTAAAAGCAAAGTTACTGCACTCAGTGGGTAAGGAAATTGGGTTA
60844017 ACCTTACTTTCAAATTAATAATTTAAATAAGTATGTGAATTTGAGATTTTATTGTATAAAAAATT
261 ACCTTACTTTCAAATTAATAATTTAAATAAGTATGTGAATTTGAGATTTTATTGTATAAAAAATT
60844082 TAATTTCACGTGAAACATGTAAAAGA
326 TAATTTCACGTGAAACATGTAAAAGA
*
60844108 GAAAAAAGTAGGATGATGGTAGGCATAAATGACATCAATGAAGTGAGGGCATCACTTTCTAAATT
1 GAAAAAAGTAAGATGATGGTA-GCATAAATGACATCAATGAAGTGAGGGCATCACTTTCTAAATT
60844173 TATAATCTTTGGTTGCTTTTTGGTGAAAGCAAAATCTGCACTTGACTTGGGGTCAATATTATATA
65 TATAATCTTTGGTTGCTTTTTGGTGAAAGCAAAATCTGCACTTGACTTGGGGTCAATATTATATA
60844238 TTATCCTTTGTAAATTAGATAAGTAGATGTCATGAAAGAGACAATAGCAATTATTGCTTTCTTTT
130 TTATCCTTTGTAAATTAGATAAGTAGATGTCATGAAAGAGACAATAGCAATTATTGCTTTCTTTT
60844303 TCTTTTGTGGAAAATTTGATCCTAAAAGCAAAGTTACTGCACTCAGTGGGTAAGGAAATTGGGTT
195 TCTTTTGTGGAAAATTTGATCCTAAAAGCAAAGTTACTGCACTCAGTGGGTAAGGAAATTGGGTT
60844368 AACCTTACTTTCAAATTAATAATTTAAATAAGTATGTGAATTTGAGATTTTATTGTATAAAAAAT
260 AACCTTACTTTCAAATTAATAATTTAAATAAGTATGTGAATTTGAGATTTTATTGTATAAAAAAT
60844433 TTAATTTCA
325 TTAATTTCA
60844442 TAATTAAAAA
Statistics
Matches: 332, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
351 20 0.06
352 312 0.94
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (351 bp):
GAAAAAAGTAAGATGATGGTAGCATAAATGACATCAATGAAGTGAGGGCATCACTTTCTAAATTT
ATAATCTTTGGTTGCTTTTTGGTGAAAGCAAAATCTGCACTTGACTTGGGGTCAATATTATATAT
TATCCTTTGTAAATTAGATAAGTAGATGTCATGAAAGAGACAATAGCAATTATTGCTTTCTTTTT
CTTTTGTGGAAAATTTGATCCTAAAAGCAAAGTTACTGCACTCAGTGGGTAAGGAAATTGGGTTA
ACCTTACTTTCAAATTAATAATTTAAATAAGTATGTGAATTTGAGATTTTATTGTATAAAAAATT
TAATTTCACGTGAAACATGTAAAAGA
Found at i:60847896 original size:17 final size:18
Alignment explanation
Indices: 60847882--60847915 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60847872 CAAATTAATT
60847882 TTTAT-TAATTTTTAAAC
1 TTTATATAATTTTTAAAC
*
60847899 TTTATATAATTTATAAA
1 TTTATATAATTTTTAAA
60847916 AATCATCTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTATATAATTTTTAAAC
Found at i:60850106 original size:4 final size:4
Alignment explanation
Indices: 60850097--60850148 Score: 61
Period size: 4 Copynumber: 12.8 Consensus size: 4
60850087 TTCATCGAGC
* *
60850097 ATTT ATTT ATTT ATTC ATTTT ATTT -TATT ATTT ATTT ATTT ATTT ACTT
1 ATTT ATTT ATTT ATTT A-TTT ATTT AT-TT ATTT ATTT ATTT ATTT ATTT
60850146 ATT
1 ATT
60850149 ATTCCTTTGT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
3 1 0.02
4 36 0.88
5 4 0.10
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (4 bp):
ATTT
Found at i:60851304 original size:2 final size:2
Alignment explanation
Indices: 60851297--60851334 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
60851287 TTTCTCGTGT
60851297 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
60851335 AACAAAGGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:60854726 original size:8 final size:9
Alignment explanation
Indices: 60854695--60854723 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
60854685 AAAATTTTTA
60854695 TTTAAAATT
1 TTTAAAATT
60854704 TTTAAAATT
1 TTTAAAATT
60854713 TTTAAAATT
1 TTTAAAATT
60854722 TT
1 TT
60854724 AAATTAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (9 bp):
TTTAAAATT
Found at i:60870765 original size:52 final size:48
Alignment explanation
Indices: 60870703--60870895 Score: 196
Period size: 47 Copynumber: 4.0 Consensus size: 48
60870693 GAAATGTGAT
* * *
60870703 TTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAAATGTGATTTGTGC
1 TTCCGTATAAGACCATAGCTGGGATATGGCATC-GAG---TGTGATATGTGC
* *
60870755 TTCCGTATAAGACCATATCCGGGATATGGCATCG-GTGTGATATGTGC
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
* * *
60870802 TACTGTATAAGACCATATCTGGGATATGGCATC-AGTGTGATATGTG-
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
* * * *
60870848 ATCCGTATAAGACCATGGCTGGGCTATGGCCTCG-GTATGTGATATGTG
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAG--TGTGATATGTG
60870896 ACTATGTGCA
Statistics
Matches: 122, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
46 27 0.22
47 53 0.43
48 11 0.09
50 1 0.01
51 1 0.01
52 29 0.24
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (48 bp):
TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
Found at i:60873651 original size:13 final size:13
Alignment explanation
Indices: 60873603--60873659 Score: 64
Period size: 13 Copynumber: 4.4 Consensus size: 13
60873593 CCATATAAAC
*
60873603 ATTTCATATAA-C
1 ATTTCATATAATT
*
60873615 ACTTCATATAATT
1 ATTTCATATAATT
60873628 ATTTCCATATAATT
1 ATTT-CATATAATT
60873642 GA-TTCATATAATT
1 -ATTTCATATAATT
60873655 ATTTC
1 ATTTC
60873660 GTTTATCTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
12 11 0.29
13 15 0.39
14 11 0.29
15 1 0.03
ACGTcount: A:0.37, C:0.14, G:0.02, T:0.47
Consensus pattern (13 bp):
ATTTCATATAATT
Found at i:60873679 original size:40 final size:40
Alignment explanation
Indices: 60873605--60873720 Score: 121
Period size: 40 Copynumber: 2.9 Consensus size: 40
60873595 ATATAAACAT
** *
60873605 TTCATATAA-CACTT-CATATAAT-TATTTCCATATAATTGA
1 TTCATATAACCA-TTACATAT-ATCTATTTCTGTATAACTGA
** * * *
60873644 TTCATATAATTATTTCGTTTATCTATTTCTGTATAACTGA
1 TTCATATAACCATTACATATATCTATTTCTGTATAACTGA
60873684 TTCATATAACCATTACATATATCTATTTCTGTATAAC
1 TTCATATAACCATTACATATATCTATTTCTGTATAAC
60873721 CAATTCTTAT
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
39 13 0.21
40 50 0.79
ACGTcount: A:0.34, C:0.16, G:0.04, T:0.47
Consensus pattern (40 bp):
TTCATATAACCATTACATATATCTATTTCTGTATAACTGA
Found at i:60873731 original size:27 final size:27
Alignment explanation
Indices: 60873688--60873739 Score: 63
Period size: 27 Copynumber: 1.9 Consensus size: 27
60873678 AACTGATTCA
60873688 TATAACCATTACATAT-ATCTATTTCTG
1 TATAACCATTACATATAATC-ATTTCTG
*
60873715 TATAACCAATT-CTTATAATCATTTC
1 TATAACC-ATTACATATAATCATTTC
60873740 ACATAACCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
27 16 0.73
28 6 0.27
ACGTcount: A:0.35, C:0.19, G:0.02, T:0.44
Consensus pattern (27 bp):
TATAACCATTACATATAATCATTTCTG
Found at i:60873752 original size:40 final size:40
Alignment explanation
Indices: 60873668--60873757 Score: 101
Period size: 40 Copynumber: 2.3 Consensus size: 40
60873658 TCGTTTATCT
** * * *
60873668 ATTTCTGTATAACTGATTCATATAACCATTACATATATCT
1 ATTTCTGTATAACCAATTCATATAACCATTACACATAACC
* * *
60873708 ATTTCTGTATAACCAATTCTTATAATCATTTCACATAACC
1 ATTTCTGTATAACCAATTCATATAACCATTACACATAACC
60873748 ATTTC-GTATA
1 ATTTCTGTATA
60873758 GCCATTTAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
39 5 0.12
40 37 0.88
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.42
Consensus pattern (40 bp):
ATTTCTGTATAACCAATTCATATAACCATTACACATAACC
Found at i:60881961 original size:213 final size:213
Alignment explanation
Indices: 60881595--60883204 Score: 2497
Period size: 213 Copynumber: 7.6 Consensus size: 213
60881585 AAGACACCAA
* *
60881595 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGT-GTT-TATCTTCA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTCGTTCAAGC-TCA
* *
60881658 AATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCGGTTCCGCTTAAA
65 AATCCATAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* * * *
60881723 TCAAGTTCATACAACCTCTTCATGGTGTCTAAGATTTCCGGGAAAATCTCCAATCTCGAGCAACC
130 TCAAGTTCGTACAACATCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACC
60881788 TTTAAGATAGAATCTC-CTG
195 TTTAAGATAGAATCTCTC-G
* * * * *
60881807 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAACGTTTTTACAGTTGTTCATA-TTCA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTCGTTCA-AGCTCA
*
60881871 AATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
65 AATCCATAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* *
60881936 TCAAGTTCGTACAACATCTTCATGGTGTCCAAGATTTCTGGGAAAATCTCCAATCTCGAGCAACC
130 TCAAGTTCGTACAACATCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACC
*
60882001 TTTAAAATAGAATCTCTCG
195 TTTAAGATAGAATCTCTCG
* * *
60882020 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCGAACAAGGTTTTCACAGTCATCCAAGCTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTCGTTCAAGCTCAA
* * *
60882085 ATGCACAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCTCTTAAAT
66 ATCCATAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
*
60882150 CAAGTTCGTACAACATCTTCATGGTGTCCATGCTTTCCGGGAAAATCTCCAATCTCGAGCAACCT
131 CAAGTTCGTACAACATCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
*
60882215 TTAAGATAGAATCTCTCC
196 TTAAGATAGAATCTCTCG
* * * *
60882233 AGAGATTTCAATTTATAAAAGTTGTCAGGAAGGAAAACAAGGTTTTCACAGTCATCCAAGCTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTCGTTCAAGCTCAA
* * *
60882298 ATGCACAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCTCTTAAAT
66 ATCCATAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
60882363 CAAGTTCGTACAACATCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
131 CAAGTTCGTACAACATCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
*
60882428 TTAAGATAGAATCTCTCC
196 TTAAGATAGAATCTCTCG
* * * *
60882446 AGAGATTTCAATTTATAAAAGTTGTCAGGAAGGAAAACAAGGTTTTTACAG-CTGTTCATA-TTC
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTC-GTTCA-AGCTC
*
60882509 AAAT-CATTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGTCGTTCCGCTTA
64 AAATCCA-TAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTA
*
60882573 AATCAAGTTCGTACAACATCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCAAGCAA
128 AATCAAGTTCGTACAACATCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAA
60882638 CCTTTAAGATAGAATCTCTCG
193 CCTTTAAGATAGAATCTCTCG
* * *
60882659 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCGAACAAGGTTTTCACAGTCATCCAAGCTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTCGTTCAAGCTCAA
* *
60882724 ATGCACAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
66 ATCCATAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
* * *
60882789 CAAGTTCGTACAACCTCTTCATGGTGTCTAAGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
131 CAAGTTCGTACAACATCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
60882854 TTAAGATAGAATCTC-CTG
196 TTAAGATAGAATCTCTC-G
* * *
60882872 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTGTTCATA-TTCA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTCGTTCA-AGCTCA
60882936 AA-CGCATAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAA
65 AATC-CATAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAA
* * *
60883000 ATCAAGTTCATACAACCA-CTCCATGGTGTCCATGATTTCCGGG-AAATCTCCAATCTTGAGCAA
129 ATCAAGTTCGTACAA-CATCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAA
60883063 CCTTTAAGATAGAATCTCTCG
193 CCTTTAAGATAGAATCTCTCG
* * * * *
60883084 AGAGATTTCAATTTATAAATGCTGTCAGGAAGGCAAACAAAGTTTTCGCAATCGCTCAAGCTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTCGTTCAAGCTCAA
* * *
60883149 ATACTTAAGACCAATAAGATTGCCCATTGAGGATGGTAATTCCTTCAAAGCCGTTC
66 ATCCATAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTC
60883205 AACTTAAAAC
Statistics
Matches: 1301, Mismatches: 79, Indels: 36
0.92 0.06 0.03
Matches are distributed among these distances:
211 1 0.00
212 200 0.15
213 1092 0.84
214 7 0.01
215 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (213 bp):
AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTCGTTCAAGCTCAA
ATCCATAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
CAAGTTCGTACAACATCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
TTAAGATAGAATCTCTCG
Found at i:60888268 original size:9 final size:9
Alignment explanation
Indices: 60888254--60888281 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
60888244 TTTTGTTACA
60888254 ACAATTAAT
1 ACAATTAAT
60888263 ACAATTAAT
1 ACAATTAAT
60888272 ACAATTAAT
1 ACAATTAAT
60888281 A
1 A
60888282 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:60888306 original size:68 final size:66
Alignment explanation
Indices: 60888224--60888365 Score: 239
Period size: 68 Copynumber: 2.1 Consensus size: 66
60888214 TCAAGTTTGT
* *
60888224 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATAAAATGTTAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
60888289 AAA
64 AAA
60888292 TTTACTAATAAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAA
1 TTTACTAATAAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAA
*
60888357 T
66 A
60888358 TTTACTAA
1 TTTACTAA
60888366 CAATTAATTT
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
66 27 0.38
67 1 0.01
68 43 0.61
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (66 bp):
TTTACTAATAAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAA
A
Found at i:60888375 original size:16 final size:16
Alignment explanation
Indices: 60888354--60888395 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
60888344 AATAATTTGA
*
60888354 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
60888370 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
60888386 TAGTTTTAAT
1 TAATTTTAAT
60888396 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:60888379 original size:22 final size:23
Alignment explanation
Indices: 60888369--60888424 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
60888359 TTACTAACAA
* * *
60888369 TTAATTTTAAT-AACAATTAGTT
1 TTAATTTTAATAAAAAAATAATT
*
60888391 TTAATTTTATTAAAAAAATAATT
1 TTAATTTTAATAAAAAAATAATT
60888414 TTAATTTTAAT
1 TTAATTTTAAT
60888425 TTTAATTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
TTAATTTTAATAAAAAAATAATT
Found at i:60888889 original size:3 final size:3
Alignment explanation
Indices: 60888881--60888907 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
60888871 TTGATCATAT
60888881 CAG CAG CAG CAG CAG CAG CAG CAG CAG
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG
60888908 AAGAAGAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.33, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:60890277 original size:22 final size:22
Alignment explanation
Indices: 60890233--60890278 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
60890223 AATCTCCTTC
* *
60890233 TTTATACTTGTTTAAATCTAAA
1 TTTATACTTGTTTAAACCCAAA
60890255 TTTATACTTGTTTAAACCCAAA
1 TTTATACTTGTTTAAACCCAAA
60890277 TT
1 TT
60890279 CGATATCTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.35, C:0.13, G:0.04, T:0.48
Consensus pattern (22 bp):
TTTATACTTGTTTAAACCCAAA
Found at i:60893388 original size:21 final size:21
Alignment explanation
Indices: 60893362--60893402 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
60893352 AGACGAGCAA
* *
60893362 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
60893383 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
60893403 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:60901800 original size:15 final size:15
Alignment explanation
Indices: 60901776--60901809 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
60901766 AACAATTACG
*
60901776 ATAATGCGAGCAAAA
1 ATAATACGAGCAAAA
*
60901791 ATAATACGAGCGAAA
1 ATAATACGAGCAAAA
60901806 ATAA
1 ATAA
60901810 CAAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.12, G:0.18, T:0.15
Consensus pattern (15 bp):
ATAATACGAGCAAAA
Found at i:60901932 original size:19 final size:19
Alignment explanation
Indices: 60901903--60901958 Score: 57
Period size: 18 Copynumber: 3.1 Consensus size: 19
60901893 AATAATGGAC
60901903 ACATAAA-TAAATAAATAA
1 ACATAAAGTAAATAAATAA
60901921 ACATAAAGTAAA-ACAATAA
1 ACATAAAGTAAATA-AATAA
*
60901940 TA-ATAAAG-AAATGAATAA
1 -ACATAAAGTAAATAAATAA
60901958 A
1 A
60901959 ATTATAAACA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
17 1 0.03
18 16 0.48
19 15 0.45
20 1 0.03
ACGTcount: A:0.70, C:0.05, G:0.05, T:0.20
Consensus pattern (19 bp):
ACATAAAGTAAATAAATAA
Found at i:60908271 original size:30 final size:32
Alignment explanation
Indices: 60908218--60908276 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
60908208 TATTTGACAA
60908218 TTTAAATATAAATTATTTGATTTATATTTTAT
1 TTTAAATATAAATTATTTGATTTATATTTTAT
*
60908250 TTTATATATAAA-TATTT-ATTTATATTT
1 TTTAAATATAAATTATTTGATTTATATTT
60908277 ATATATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 10 0.38
31 5 0.19
32 11 0.42
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (32 bp):
TTTAAATATAAATTATTTGATTTATATTTTAT
Found at i:60908273 original size:18 final size:19
Alignment explanation
Indices: 60908245--60908284 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
60908235 TGATTTATAT
60908245 TTTATTTTATATATAAATA
1 TTTATTTTATATATAAATA
* *
60908264 TTTA-TTTATATTTATATA
1 TTTATTTTATATATAAATA
60908282 TTT
1 TTT
60908285 TATTCGCTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTATTTTATATATAAATA
Found at i:60909828 original size:20 final size:18
Alignment explanation
Indices: 60909777--60909831 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 18
60909767 TAATTAACTT
*
60909777 TTTAAAATATTAAAA--A
1 TTTAAAAAATTAAAATTA
60909793 TTTAAAAAATTAAAATTA
1 TTTAAAAAATTAAAATTA
60909811 TTTAAAAAATATACAAATTA
1 TTTAAAAAAT-TA-AAATTA
60909831 T
1 T
60909832 AAGTAAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
16 14 0.41
18 11 0.32
19 2 0.06
20 7 0.21
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (18 bp):
TTTAAAAAATTAAAATTA
Found at i:60920463 original size:3 final size:3
Alignment explanation
Indices: 60920455--60920479 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
60920445 TAAGATATAT
60920455 GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA G
60920480 CTGACCTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:60922004 original size:13 final size:13
Alignment explanation
Indices: 60921988--60922012 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60921978 CATGGCTCAA
60921988 ATTTAAAATAAAT
1 ATTTAAAATAAAT
60922001 ATTTAAAATAAA
1 ATTTAAAATAAA
60922013 GAATGACCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
ATTTAAAATAAAT
Found at i:60925872 original size:24 final size:24
Alignment explanation
Indices: 60925832--60925878 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
60925822 TAAAAGATTT
*
60925832 AGTATTTATTAATATAATATATTA
1 AGTATTTATTAACATAATATATTA
* *
60925856 AGTATTTATTAGCATAATTTATT
1 AGTATTTATTAACATAATATATT
60925879 TGACTTACTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.51
Consensus pattern (24 bp):
AGTATTTATTAACATAATATATTA
Found at i:60926496 original size:19 final size:19
Alignment explanation
Indices: 60926444--60926496 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
60926434 CAAGATGACT
60926444 TACAACAATTTCAAAAA-C
1 TACAACAATTTCAAAAATC
* *
60926462 -ATAA-AATTT-ATGAAATC
1 TACAACAATTTCA-AAAATC
60926479 TACAACAATTTCAAAAAT
1 TACAACAATTTCAAAAAT
60926497 GGAGTTTTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 9
0.67 0.10 0.23
Matches are distributed among these distances:
15 1 0.04
16 8 0.31
17 4 0.15
18 3 0.12
19 9 0.35
20 1 0.04
ACGTcount: A:0.55, C:0.15, G:0.02, T:0.28
Consensus pattern (19 bp):
TACAACAATTTCAAAAATC
Found at i:60927402 original size:22 final size:22
Alignment explanation
Indices: 60927361--60927402 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
60927351 TAGCCTTAAA
* *
60927361 TAGTTTTCTTTAGTTTTAGTTT
1 TAGTTTTCTTTAGCTGTAGTTT
*
60927383 TAGTTTTCTTTTGCTGTAGT
1 TAGTTTTCTTTAGCTGTAGT
60927403 CGGAAGATCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.12, C:0.07, G:0.17, T:0.64
Consensus pattern (22 bp):
TAGTTTTCTTTAGCTGTAGTTT
Found at i:60927674 original size:25 final size:25
Alignment explanation
Indices: 60927640--60927690 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
60927630 TAATTAACAA
60927640 AATAATAAAGATTCATAACAGGGTT
1 AATAATAAAGATTCATAACAGGGTT
*
60927665 AATAATAAAGATTCATAATAGGGTT
1 AATAATAAAGATTCATAACAGGGTT
60927690 A
1 A
60927691 GTTGGTATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.49, C:0.06, G:0.16, T:0.29
Consensus pattern (25 bp):
AATAATAAAGATTCATAACAGGGTT
Found at i:60927998 original size:17 final size:19
Alignment explanation
Indices: 60927966--60928000 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
60927956 GTCGATTAGG
60927966 TTAATTTAGATTTAATAAT
1 TTAATTTAGATTTAATAAT
60927985 TTAA-TTAG-TTTAATAA
1 TTAATTTAGATTTAATAA
60928001 ATCTATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 4 0.25
19 4 0.25
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (19 bp):
TTAATTTAGATTTAATAAT
Found at i:60928926 original size:154 final size:147
Alignment explanation
Indices: 60928653--60928932 Score: 445
Period size: 154 Copynumber: 1.9 Consensus size: 147
60928643 CTAAAGCTAT
60928653 TTGTTTTTGAAGTCAATTACCCTTAAAGTGGTAGGCAGAGCACTACTTTACACTGCAAAAGCGTG
1 TTGTTTTTGAAGTCAATTACCCTTAAAGTGGTAGGCAGAGCACTACTTTACACTGCAAAAGCGTG
60928718 TGGGACATCCACATTGAAAATAATTGTACGACTTCTCCAGCAAATTCAAAGTCTAGTCCTTAGGA
66 TGGGACATCCACATTGAAAATAATTGTACGACTTCTCCAGCAAATTCAAAGTCTAGTCCTTAGGA
60928783 TTTGGGAACCAATTATA
131 TTTGGGAACCAATTATA
* *
60928800 TTGTTTTTTAAGTCAATTACCCTTTAAAG-GTGTAGGCAGAGCACTACTTTATACTGCAAAAGCG
1 TTGTTTTTGAAGTCAATTACCC-TTAAAGTG-GTAGGCAGAGCACTACTTTACACTGCAAAAGCG
* *
60928864 TGTTGGAGTTGGACATTCACATTGAAAATAATTGTACGACTTCTCCAGCAAATTCGAAGTCTAGT
64 TG-T---G--GGACATCCACATTGAAAATAATTGTACGACTTCTCCAGCAAATTCAAAGTCTAGT
60928929 CCTT
123 CCTT
60928933 GGGAACCAAT
Statistics
Matches: 121, Mismatches: 4, Indels: 9
0.90 0.03 0.07
Matches are distributed among these distances:
147 22 0.18
148 40 0.33
149 1 0.01
152 1 0.01
154 57 0.47
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32
Consensus pattern (147 bp):
TTGTTTTTGAAGTCAATTACCCTTAAAGTGGTAGGCAGAGCACTACTTTACACTGCAAAAGCGTG
TGGGACATCCACATTGAAAATAATTGTACGACTTCTCCAGCAAATTCAAAGTCTAGTCCTTAGGA
TTTGGGAACCAATTATA
Found at i:60929773 original size:16 final size:15
Alignment explanation
Indices: 60929752--60929783 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
60929742 GTTCAAATAT
60929752 ATAATAATTATAAAAA
1 ATAATAA-TATAAAAA
60929768 ATAATAATATAAAAA
1 ATAATAATATAAAAA
60929783 A
1 A
60929784 CTTGACATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
ATAATAATATAAAAA
Found at i:60929944 original size:18 final size:19
Alignment explanation
Indices: 60929918--60929953 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
60929908 TTAATGTTAA
*
60929918 ATAATTTTA-ATATTTTTT
1 ATAAATTTATATATTTTTT
60929936 ATAAATTTATATATTTTT
1 ATAAATTTATATATTTTT
60929954 AAATATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
ATAAATTTATATATTTTTT
Found at i:60929954 original size:18 final size:18
Alignment explanation
Indices: 60929918--60929971 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
60929908 TTAATGTTAA
*
60929918 ATAATTTTA-ATATTTTTT
1 ATAAATTTATATA-TTTTT
60929936 ATAAATTTATATATTTTT
1 ATAAATTTATATATTTTT
60929954 A-AATATTT-T-TATTTTT
1 ATAA-ATTTATATATTTTT
60929970 AT
1 AT
60929972 TAATGCTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
16 8 0.25
17 3 0.09
18 18 0.56
19 3 0.09
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
ATAAATTTATATATTTTT
Found at i:60930543 original size:219 final size:219
Alignment explanation
Indices: 60930164--60930585 Score: 835
Period size: 219 Copynumber: 1.9 Consensus size: 219
60930154 TACCTCTGCC
60930164 TCGTCCTTTGCAAATGATACATGAACTCCGCAATGCTTTACCTCACAACAAATGCAGTGAGACCA
1 TCGTCCTTTGCAAATGATACATGAACTCCGCAATGCTTTACCTCACAACAAATGCAGTGAGACCA
60930229 ATCCCCCTTGCAAACAAGAGGGTAGAATTTAAACCAAACCAGGCCTCATTTGTTTGATGCCTGAG
66 ATCCCCCTTGCAAACAAGAGGGTAGAATTTAAACCAAACCAGGCCTCATTTGTTTGATGCCTGAG
60930294 TTTCCACAAACCGACTAACTTCAGCATTGTCATCACAGAAATAAGTGATCCCACCCAACCAATTG
131 TTTCCACAAACCGACTAACTTCAGCATTGTCATCACAGAAATAAGTGATCCCACCCAACCAATTG
60930359 GTCTCCAGCATTGTCTCCAGGGAT
196 GTCTCCAGCATTGTCTCCAGGGAT
60930383 TCGTCCTTTGCAAATGATACATGAACTCCGCAATGCTTTACCTCACAACAAATGCAGTGAGACCA
1 TCGTCCTTTGCAAATGATACATGAACTCCGCAATGCTTTACCTCACAACAAATGCAGTGAGACCA
*
60930448 ATCCCCCTTGCAAACAATAGGGTAGAATTTAAACCAAACCAGGCCTCATTTGTTTGATGCCTGAG
66 ATCCCCCTTGCAAACAAGAGGGTAGAATTTAAACCAAACCAGGCCTCATTTGTTTGATGCCTGAG
60930513 TTTCCACAAACCGACTAACTTCAGCATTGTCATCACAGAAATAAGTGATCCCACCCAACCAATTG
131 TTTCCACAAACCGACTAACTTCAGCATTGTCATCACAGAAATAAGTGATCCCACCCAACCAATTG
60930578 GTCTCCAG
196 GTCTCCAG
60930586 GGATTCGTCT
Statistics
Matches: 202, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
219 202 1.00
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.25
Consensus pattern (219 bp):
TCGTCCTTTGCAAATGATACATGAACTCCGCAATGCTTTACCTCACAACAAATGCAGTGAGACCA
ATCCCCCTTGCAAACAAGAGGGTAGAATTTAAACCAAACCAGGCCTCATTTGTTTGATGCCTGAG
TTTCCACAAACCGACTAACTTCAGCATTGTCATCACAGAAATAAGTGATCCCACCCAACCAATTG
GTCTCCAGCATTGTCTCCAGGGAT
Found at i:60936805 original size:213 final size:211
Alignment explanation
Indices: 60935147--60936811 Score: 2338
Period size: 213 Copynumber: 7.8 Consensus size: 211
60935137 AAGACACAAA
* * *
60935147 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTACAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCA-ATGCAA
* * *
60935212 ATGCGTAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCACTTAAAT
65 ATAC-TAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
* * * * * * *
60935277 CAAGATCCTTCAACCACTCCATGGTGTCCATGACTTCCGGAAAAATCTCCAATCTCGAGCAACCT
129 CAAGTTCATACAACCTCTCCATGGTGTCCATGATTTCTGGGAAAATCTCCAATCTCGAGCAACCT
* **
60935342 GTAAGATAGAATCTCGAG
194 TTAAGATAGAATCTCTCG
* * *
60935360 AGAGATTTCAATTTATAAAAGCTGTTAGGAAGGCAAACAAGATTTTCACAGTT-TTGCAATGTCA
1 AGAGATTTCAATTTACAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTT-CAATG-CA
* * *
60935424 AATCCTGAAGACCAATAAGATTGCCAATCGAGGATGGTAATTCCTTCAAAGCTGTTCCGCTTAAA
64 AATACT-AAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
*
60935489 TCAAGTTCAAACAACCTCTCCATGGTGTCCATGATTT-TCGGGAAAATCTCCAATCTCGAGCAAC
128 TCAAGTTCATACAACCTCTCCATGGTGTCCATGATTTCT-GGGAAAATCTCCAATCTCGAGCAAC
*
60935553 CTTTAAGATAGAATCTCCCG
192 CTTTAAGATAGAATCTCTCG
* * * * *
60935573 AGAGATTTCAATTTATAAAAACTGTCAGGAAGGCAAATAAGGTTTTCACAATTGTTCAATCCCAA
1 AGAGATTTCAATTTACAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAAT-GCAA
*
60935638 ATACTTAAGACCAATAAGATTGGCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
65 ATAC-TAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
* *
60935703 CAAGTTCATACAACCTCTCCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCAAGCAACCT
129 CAAGTTCATACAACCTCTCCATGGTGTCCATGATTTCTGGGAAAATCTCCAATCTCGAGCAACCT
*
60935768 GTAAGATAGAATCTCTCG
194 TTAAGATAGAATCTCTCG
* * *
60935786 AGAGATTTCAATTTACAAAAGCTGCCAGGAAGGCAAACAAGGTTTTTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTACAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCA-ATGCAA
** * **
60935851 ACGCGTAAGACCAATAAGATTTCCAATTGAGGATGGTAATTCCTTCAAAGCTATTCCGCTTAAAT
65 ATAC-TAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
* *
60935916 CAAGTTCATACAACCTCTCCCTGGTGTCCATGATTTCTGGGAAAATCTCCAATCTCGAACAACCT
129 CAAGTTCATACAACCTCTCCATGGTGTCCATGATTTCTGGGAAAATCTCCAATCTCGAGCAACCT
* * *
60935981 TTAAGATTGAATATCTCA
194 TTAAGATAGAATCTCTCG
* * * *
60935999 AGAGATTTCAATTTATAAAAGCTGTCACGAAAGCAAACAAGGTTTTTACAGTTGTTCATATTG-A
1 AGAGATTTCAATTTACAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCA-A-TGCA
**
60936063 AACGCGTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
64 AATAC-TAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
60936128 TCAAGTTCATACAACCTCTCCATGGTGTCCATGATTTCTGGGAAAATCTCCAATCTCGAGCAACC
128 TCAAGTTCATACAACCTCTCCATGGTGTCCATGATTTCTGGGAAAATCTCCAATCTCGAGCAACC
*
60936193 TTTAAGATAGAATCTCTCA
193 TTTAAGATAGAATCTCTCG
*
60936212 AGAGATTTCAATTTACAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTCGTTCAA-GCTCA
1 AGAGATTTCAATTTACAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATG--CA
* *
60936276 AATACACAAGACCAATAAGATTGACAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
64 AATAC-TAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
*
60936341 TCAAGTTCATACAACCTCTCCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACC
128 TCAAGTTCATACAACCTCTCCATGGTGTCCATGATTTCTGGGAAAATCTCCAATCTCGAGCAACC
* * ** * *
60936406 ATGAAGACGGAATGTCGT-A
193 TTTAAGATAGAATCTC-TCG
*
60936425 AGAGATTTCAATTTACAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTCGTTCAA-GCTCA
1 AGAGATTTCAATTTACAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATG--CA
* * * * *
60936489 AATACACAAGACCAATAAGATTGGCAATTGAGGATGGCAATTCCTTCAAAGCCGTTCCACTGAAA
64 AATAC-TAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
*
60936554 TCAAGTTCATACAACCTCTCCATGGTGTCCATGATTTCTGGGAAAATCTCCAATCTCAAGCAACC
128 TCAAGTTCATACAACCTCTCCATGGTGTCCATGATTTCTGGGAAAATCTCCAATCTCGAGCAACC
60936619 TTTAAGATAGAATCTCTCG
193 TTTAAGATAGAATCTCTCG
* *
60936638 AGAGATTTCAATTTGCAAAAGCTGCCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCATATGCAA
1 AGAGATTTCAATTTACAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCA-ATGCAA
* * * *
60936703 ATTCTCAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCATTCCACTTAAAA
65 ATACT-AAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
* * * * *
60936768 CAAGATGCCT-CAAACTCTCCATGGTGCCCACGATTTCT-GGAAAA
129 CAAG-TTCATACAACCTCTCCATGGTGTCCATGATTTCTGGGAAAA
60936812 CTACACAGAT
Statistics
Matches: 1321, Mismatches: 112, Indels: 39
0.90 0.08 0.03
Matches are distributed among these distances:
210 1 0.00
212 13 0.01
213 1295 0.98
214 11 0.01
215 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.27
Consensus pattern (211 bp):
AGAGATTTCAATTTACAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATGCAAA
TACTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAATCA
AGTTCATACAACCTCTCCATGGTGTCCATGATTTCTGGGAAAATCTCCAATCTCGAGCAACCTTT
AAGATAGAATCTCTCG
Found at i:60952681 original size:20 final size:19
Alignment explanation
Indices: 60952654--60952713 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
60952644 AGCAATTAAT
60952654 TTTAAAAATTATAAAAATTA
1 TTTAAAAA-TATAAAAATTA
*
60952674 TTTGAAAAA-ATTAAAATTA
1 TTT-AAAAATATAAAAATTA
*
60952693 TTTAAAAAGTATACAAATTA
1 TTTAAAAA-TATAAAAATTA
60952713 T
1 T
60952714 AAAAAAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
18 5 0.15
19 12 0.35
20 12 0.35
21 5 0.15
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (19 bp):
TTTAAAAATATAAAAATTA
Found at i:60955459 original size:6 final size:6
Alignment explanation
Indices: 60955448--60955481 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
60955438 GGATATCTCT
60955448 CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC CTTC
1 CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC CTTC
60955482 GCCTAAGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (6 bp):
CTTCCC
Found at i:60956853 original size:22 final size:22
Alignment explanation
Indices: 60956809--60956853 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
60956799 AAATAAGTAA
* * *
60956809 TAAAATATTTAATAGATAAATT
1 TAAAATATATAATACACAAATT
*
60956831 TAAAATATATAATACACATATT
1 TAAAATATATAATACACAAATT
60956853 T
1 T
60956854 TATTTTGTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (22 bp):
TAAAATATATAATACACAAATT
Found at i:60972123 original size:20 final size:22
Alignment explanation
Indices: 60972098--60972155 Score: 84
Period size: 20 Copynumber: 2.6 Consensus size: 22
60972088 CATGACTGTC
60972098 ACTAACCCTACTGCAGCCTAACTA
1 ACTAACCCTACTGCAGCC--ACTA
60972122 ACTAACCCTACTGCAG-C-CTA
1 ACTAACCCTACTGCAGCCACTA
60972142 ACTAACCCTACTGC
1 ACTAACCCTACTGC
60972156 TAATTACACG
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 17 0.50
23 1 0.03
24 16 0.47
ACGTcount: A:0.31, C:0.40, G:0.09, T:0.21
Consensus pattern (22 bp):
ACTAACCCTACTGCAGCCACTA
Found at i:60972130 original size:24 final size:24
Alignment explanation
Indices: 60972098--60972147 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
60972088 CATGACTGTC
60972098 ACTAACCCTACTGCAGCCTAACTA
1 ACTAACCCTACTGCAGCCTAACTA
60972122 ACTAACCCTACTGCAGCCTAACTA
1 ACTAACCCTACTGCAGCCTAACTA
60972146 AC
1 AC
60972148 CCTACTGCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.38, G:0.08, T:0.20
Consensus pattern (24 bp):
ACTAACCCTACTGCAGCCTAACTA
Found at i:60972746 original size:25 final size:25
Alignment explanation
Indices: 60972718--60972898 Score: 215
Period size: 25 Copynumber: 7.3 Consensus size: 25
60972708 GTTTATATAT
* *
60972718 TTATGTATTATGTAAATTATGTAAC
1 TTATGTATTATGTAAGTTATGTAAG
*
60972743 TTATGTATTATGTAAGTTATGAAAG
1 TTATGTATTATGTAAGTTATGTAAG
* *
60972768 TTGTGTATTACGTAAGTTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAG
*
60972793 TTGTGTATTATGTAAGTTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAG
* **
60972818 TTATGTATTATGTAAATTATGTGCG
1 TTATGTATTATGTAAGTTATGTAAG
*
60972843 TTATGTAAGTTATATAAGTTATGT-A-
1 TTATGT-A-TTATGTAAGTTATGTAAG
* *
60972868 TTATGTATTATTTATG-TATGTAAG
1 TTATGTATTATGTAAGTTATGTAAG
60972892 TTATGTA
1 TTATGTA
60972899 AGCTATAAAT
Statistics
Matches: 136, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
22 5 0.04
23 8 0.06
24 8 0.06
25 101 0.74
26 1 0.01
27 13 0.10
ACGTcount: A:0.31, C:0.02, G:0.19, T:0.48
Consensus pattern (25 bp):
TTATGTATTATGTAAGTTATGTAAG
Found at i:60972851 original size:43 final size:41
Alignment explanation
Indices: 60972718--60972900 Score: 155
Period size: 41 Copynumber: 4.4 Consensus size: 41
60972708 GTTTATATAT
* *
60972718 TTATGT-A-TTATGTAAATTATGTAACTTATGTATTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGT-A-TTATGTATTATGTACG
* * * *
60972759 TTATGAAAGTTGTGT-A-TTACGTAAGTTATGTAAGTTGTGTA--
1 TTATGTAAGTTATGTAAGTTATGT-A-TTATGT-A-TTATGTACG
*
60972800 TTATGTAAGTTATGTAAGTTATGTATTATGTAAATTATGTGCG
1 TTATGTAAGTTATGTAAGTTATGTATTATGT--ATTATGTACG
* * *
60972843 TTATGTAAGTTATATAAGTTATGTATTATGTATTATTTATG
1 TTATGTAAGTTATGTAAGTTATGTATTATGTATTATGTACG
60972884 -TATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAG
60972901 CTATAAATTT
Statistics
Matches: 118, Mismatches: 15, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
40 16 0.14
41 49 0.42
42 7 0.06
43 46 0.39
ACGTcount: A:0.32, C:0.02, G:0.19, T:0.48
Consensus pattern (41 bp):
TTATGTAAGTTATGTAAGTTATGTATTATGTATTATGTACG
Found at i:60972898 original size:9 final size:9
Alignment explanation
Indices: 60972725--60972900 Score: 153
Period size: 9 Copynumber: 21.0 Consensus size: 9
60972715 TATTTATGTA
*
60972725 TTATGTAAA
1 TTATGTAAG
*
60972734 TTATGTAAC
1 TTATGTAAG
60972743 TTATGT-A-
1 TTATGTAAG
60972750 TTATGTAAG
1 TTATGTAAG
*
60972759 TTATGAAAG
1 TTATGTAAG
*
60972768 TTGTGT-A-
1 TTATGTAAG
*
60972775 TTACGTAAG
1 TTATGTAAG
60972784 TTATGTAAG
1 TTATGTAAG
*
60972793 TTGTGT-A-
1 TTATGTAAG
60972800 TTATGTAAG
1 TTATGTAAG
60972809 TTATGTAAG
1 TTATGTAAG
60972818 TTATGT-A-
1 TTATGTAAG
*
60972825 TTATGTAAA
1 TTATGTAAG
**
60972834 TTATGTGCG
1 TTATGTAAG
60972843 TTATGTAAG
1 TTATGTAAG
*
60972852 TTATATAAG
1 TTATGTAAG
60972861 TTATGT-A-
1 TTATGTAAG
60972868 TTATGT-A-
1 TTATGTAAG
* *
60972875 TTATTTATG
1 TTATGTAAG
60972884 -TATGTAAG
1 TTATGTAAG
60972892 TTATGTAAG
1 TTATGTAAG
60972901 CTATAAATTT
Statistics
Matches: 136, Mismatches: 20, Indels: 22
0.76 0.11 0.12
Matches are distributed among these distances:
7 33 0.24
8 15 0.11
9 88 0.65
ACGTcount: A:0.32, C:0.02, G:0.19, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:60979183 original size:17 final size:18
Alignment explanation
Indices: 60979149--60979194 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
60979139 CCGTTATGTC
60979149 CGCGACCGCGA-C--AAA
1 CGCGACCGCGACCGAAAA
60979164 CGCGA-CGCGACCGAAAA
1 CGCGACCGCGACCGAAAA
60979181 CGCGACCGCGACCG
1 CGCGACCGCGACCG
60979195 CAATTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
17 8 0.30
18 8 0.30
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.00
Consensus pattern (18 bp):
CGCGACCGCGACCGAAAA
Found at i:60979846 original size:9 final size:9
Alignment explanation
Indices: 60979832--60979932 Score: 79
Period size: 9 Copynumber: 11.9 Consensus size: 9
60979822 ATATTTATGT
60979832 ATTATGTAA
1 ATTATGTAA
60979841 ATTATGTAA
1 ATTATGTAA
*
60979850 CTTATGT-A
1 ATTATGTAA
60979858 A-TATGTAA
1 ATTATGTAA
*
60979866 GTTATGTAA
1 ATTATGTAA
* *
60979875 GTTGTGT--
1 ATTATGTAA
60979882 ATTATGTAA
1 ATTATGTAA
*
60979891 GTTATGTAA
1 ATTATGTAA
*
60979900 ATTGTGT--
1 ATTATGTAA
60979907 ATTATGTAA
1 ATTATGTAA
* *
60979916 GTTATGTGA
1 ATTATGTAA
*
60979925 GTTATGTA
1 ATTATGTA
60979933 TGTTGACACC
Statistics
Matches: 73, Mismatches: 13, Indels: 12
0.74 0.13 0.12
Matches are distributed among these distances:
7 16 0.22
8 2 0.03
9 55 0.75
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.47
Consensus pattern (9 bp):
ATTATGTAA
Found at i:60979847 original size:16 final size:17
Alignment explanation
Indices: 60979826--60979898 Score: 64
Period size: 16 Copynumber: 4.4 Consensus size: 17
60979816 GTTTATATAT
60979826 TTATGTA-TTATGTAAA
1 TTATGTACTTATGTAAA
60979842 TTATGTAACTTATGT-AA
1 TTATGT-ACTTATGTAAA
* *
60979859 -TATGTAAGTTATGTAAG
1 TTATGT-ACTTATGTAAA
* *
60979876 TTGTGTA-TTATGTAAG
1 TTATGTACTTATGTAAA
60979892 TTATGTA
1 TTATGTA
60979899 AATTGTGTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
16 34 0.69
17 5 0.10
18 10 0.20
ACGTcount: A:0.33, C:0.01, G:0.18, T:0.48
Consensus pattern (17 bp):
TTATGTACTTATGTAAA
Found at i:60979854 original size:25 final size:25
Alignment explanation
Indices: 60979826--60979933 Score: 153
Period size: 25 Copynumber: 4.3 Consensus size: 25
60979816 GTTTATATAT
* *
60979826 TTATGTATTATGTAAATTATGTAAC
1 TTATGTATTATGTAAGTTATGTAAG
*
60979851 TTATGTAATATGTAAGTTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAG
* *
60979876 TTGTGTATTATGTAAGTTATGTAAA
1 TTATGTATTATGTAAGTTATGTAAG
* *
60979901 TTGTGTATTATGTAAGTTATGTGAG
1 TTATGTATTATGTAAGTTATGTAAG
60979926 TTATGTAT
1 TTATGTAT
60979934 GTTGACACCA
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 74 1.00
ACGTcount: A:0.31, C:0.01, G:0.19, T:0.48
Consensus pattern (25 bp):
TTATGTATTATGTAAGTTATGTAAG
Found at i:60980934 original size:18 final size:19
Alignment explanation
Indices: 60980913--60980949 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
60980903 AATAATGGAC
60980913 ACATAAA-TAAAAAAATAA
1 ACATAAAGTAAAAAAATAA
*
60980931 ACATAAAGTAAAACAATAA
1 ACATAAAGTAAAAAAATAA
60980950 TAATAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.73, C:0.08, G:0.03, T:0.16
Consensus pattern (19 bp):
ACATAAAGTAAAAAAATAA
Found at i:60981440 original size:23 final size:22
Alignment explanation
Indices: 60981414--60981467 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
60981404 TGTATACACG
60981414 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATA-ATACTAA
* *
60981437 TACATAATAATAATAATAGTAA
1 TACATAATAAAAATAATACTAA
60981459 TAC-TAATAA
1 TACATAATAA
60981468 TACTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 6 0.21
22 9 0.31
23 14 0.48
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.31
Consensus pattern (22 bp):
TACATAATAAAAATAATACTAA
Found at i:60981448 original size:3 final size:3
Alignment explanation
Indices: 60981417--60981487 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
60981407 ATACACGTAC
* * * *
60981417 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
60981464 ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
60981488 CAAGGATATT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
2 2 0.04
3 45 0.85
4 6 0.11
ACGTcount: A:0.62, C:0.06, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:60981970 original size:11 final size:12
Alignment explanation
Indices: 60981950--60981987 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
60981940 AAAAAAAAAA
60981950 GAAGAGAGAGAGG
1 GAAGAGAGA-AGG
60981963 GAAGAGAGAAGG
1 GAAGAGAGAAGG
60981975 G-AGAGAGAAGG
1 GAAGAGAGAAGG
60981986 GA
1 GA
60981988 GGGGGGAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.46
12 4 0.17
13 9 0.38
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:60982489 original size:8 final size:8
Alignment explanation
Indices: 60982476--60982500 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
60982466 GGTGTTCGGC
60982476 GCAAGTGG
1 GCAAGTGG
60982484 GCAAGTGG
1 GCAAGTGG
60982492 GCAAGTGG
1 GCAAGTGG
60982500 G
1 G
60982501 GGGTAGGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.52, T:0.12
Consensus pattern (8 bp):
GCAAGTGG
Found at i:60982671 original size:9 final size:9
Alignment explanation
Indices: 60982642--60982862 Score: 222
Period size: 9 Copynumber: 26.2 Consensus size: 9
60982632 GGCTTCTACA
*
60982642 ATGTAAGCT
1 ATGTAAGTT
60982651 ATGT-A-TT
1 ATGTAAGTT
60982658 ATGTAAGTT
1 ATGTAAGTT
*
60982667 CTGTAAGTT
1 ATGTAAGTT
*
60982676 CTGT-A-TT
1 ATGTAAGTT
60982683 ATGTAAGTT
1 ATGTAAGTT
60982692 ATGTAAGTT
1 ATGTAAGTT
60982701 ATGTAAGTT
1 ATGTAAGTT
**
60982710 ATGTGCGTT
1 ATGTAAGTT
*
60982719 ATGTGCA-TT
1 ATGT-AAGTT
*
60982728 ATATAAGTT
1 ATGTAAGTT
60982737 ATGT-A-TT
1 ATGTAAGTT
60982744 ATGTAAGTT
1 ATGTAAGTT
60982753 ATGTAAGTT
1 ATGTAAGTT
*
60982762 CTGT-A-TT
1 ATGTAAGTT
60982769 ATGTAAGTT
1 ATGTAAGTT
60982778 ATGTAAGTT
1 ATGTAAGTT
60982787 ATGT-A-TT
1 ATGTAAGTT
60982794 ATGTAAGTT
1 ATGTAAGTT
60982803 ATGTAAGTT
1 ATGTAAGTT
*
60982812 ATATAAGTT
1 ATGTAAGTT
60982821 ATGT-A-TT
1 ATGTAAGTT
60982828 ATGT-A-TT
1 ATGTAAGTT
* *
60982835 ATTTATG-T
1 ATGTAAGTT
60982843 ATGTAAGTT
1 ATGTAAGTT
60982852 ATGTAAGTT
1 ATGTAAGTT
60982861 AT
1 AT
60982863 AAATTTTAAA
Statistics
Matches: 179, Mismatches: 18, Indels: 30
0.79 0.08 0.13
Matches are distributed among these distances:
7 39 0.22
8 18 0.10
9 122 0.68
ACGTcount: A:0.30, C:0.03, G:0.19, T:0.48
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:60982680 original size:25 final size:25
Alignment explanation
Indices: 60982642--60982856 Score: 162
Period size: 25 Copynumber: 8.6 Consensus size: 25
60982632 GGCTTCTACA
*
60982642 ATGTAAGCTATGTATTATGTAAGTT
1 ATGTAAGTTATGTATTATGTAAGTT
* *
60982667 CTGTAAGTTCTGTATTATGTAAGTT
1 ATGTAAGTTATGTATTATGTAAGTT
**
60982692 ATGTAAGTTATGTAAGTTATGTGCGTT
1 ATGTAAGTTATGT-A-TTATGTAAGTT
* *
60982719 ATGTGCA-TTATATAAGTTATGT-A-TT
1 ATGT-AAGTTATGT-A-TTATGTAAGTT
*
60982744 ATGTAAGTTATGTAAGTTCTGT-A-TT
1 ATGTAAGTTATGT-A-TTATGTAAGTT
60982769 ATGTAAGTTATGTAAGTTATGT-A-TT
1 ATGTAAGTTATGT-A-TTATGTAAGTT
*
60982794 ATGTAAGTTATGTAAGTTATATAAGTT
1 ATGTAAGTTATGT-A-TTATGTAAGTT
* *
60982821 ATGT-A-TTATGTATTATTTATG-T
1 ATGTAAGTTATGTATTATGTAAGTT
60982843 ATGTAAGTTATGTA
1 ATGTAAGTTATGTA
60982857 AGTTATAAAT
Statistics
Matches: 165, Mismatches: 17, Indels: 17
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.03
23 8 0.05
24 9 0.05
25 106 0.64
26 3 0.02
27 33 0.20
28 1 0.01
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (25 bp):
ATGTAAGTTATGTATTATGTAAGTT
Found at i:60982695 original size:34 final size:33
Alignment explanation
Indices: 60982657--60982856 Score: 164
Period size: 34 Copynumber: 6.0 Consensus size: 33
60982647 AGCTATGTAT
* *
60982657 TATGTAAGTTCTGTAAGTTCTGT-ATTATGTAAGT
1 TATGTAAGTTATGTAAGTTATGTAATTATGT-A-T
**
60982691 TATGTAAGTTATGTAAGTTATGTGCGTTATGTGCAT
1 TATGTAAGTTATGTAAGTTATGT-AATTATGT--AT
*
60982727 TATATAAGTTATGT-A-TTATGTAAGTTATGTAAGT
1 TATGTAAGTTATGTAAGTTATGTAA-TTATGT-A-T
*
60982761 TCTGT-A-TTATGTAAGTTATGTAAGTTATGTAT
1 TATGTAAGTTATGTAAGTTATGTAA-TTATGTAT
*
60982793 TATGTAAGTTATGTAAGTTATATAAGTTATGTAT
1 TATGTAAGTTATGTAAGTTATGTAA-TTATGTAT
* *
60982827 TATGT-A-TTATTTATG-TATGTAAGTTATGTA
1 TATGTAAGTTATGTAAGTTATGTAA-TTATGTA
60982857 AGTTATAAAT
Statistics
Matches: 142, Mismatches: 15, Indels: 21
0.80 0.08 0.12
Matches are distributed among these distances:
31 14 0.10
32 18 0.13
33 6 0.04
34 82 0.58
35 1 0.01
36 20 0.14
37 1 0.01
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.48
Consensus pattern (33 bp):
TATGTAAGTTATGTAAGTTATGTAATTATGTAT
Found at i:60985122 original size:17 final size:19
Alignment explanation
Indices: 60985100--60985134 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
60985090 TCTTAATAAT
60985100 ATTTT-AATTTT-TTTAAC
1 ATTTTAAATTTTATTTAAC
60985117 ATTTTAAATTTTATTTAA
1 ATTTTAAATTTTATTTAA
60985135 TACTTTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 6 0.38
19 5 0.31
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (19 bp):
ATTTTAAATTTTATTTAAC
Found at i:60985123 original size:28 final size:29
Alignment explanation
Indices: 60985087--60985182 Score: 83
Period size: 30 Copynumber: 3.3 Consensus size: 29
60985077 ATTTCGATAT
*
60985087 CATTCTTAATAATATTTTAAT-TTTTTTAA
1 CATT-TTAATAATATTTTAATATTTTATAA
* *
60985116 CATTTTAA-ATTTTATTTAATACTTTTATAA
1 CATTTTAATAATAT-TTTAATA-TTTTATAA
60985146 -ATTTTAATAATATTTTACATA-TTTATAAA
1 CATTTTAATAATATTTTA-ATATTTTAT-AA
*
60985175 AATTTTAA
1 CATTTTAA
60985183 AAATTAAAAT
Statistics
Matches: 55, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
27 3 0.05
28 15 0.27
29 17 0.31
30 20 0.36
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (29 bp):
CATTTTAATAATATTTTAATATTTTATAA
Found at i:60985235 original size:30 final size:30
Alignment explanation
Indices: 60985177--60985235 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
60985167 TTTATAAAAA
* *
60985177 TTTTAAAAATTAAAATTTTAAAAGAATTAT
1 TTTTAAAAATTAAAACTTTAAAAAAATTAT
*
60985207 TTTTAAAAATT-AAGCTTTAAAATAAATTA
1 TTTTAAAAATTAAAACTTTAAAA-AAATTA
60985236 ACCCTGGACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.36
30 16 0.64
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (30 bp):
TTTTAAAAATTAAAACTTTAAAAAAATTAT
Found at i:60996395 original size:6 final size:6
Alignment explanation
Indices: 60996381--60996462 Score: 146
Period size: 6 Copynumber: 13.7 Consensus size: 6
60996371 CTTTTGGGTT
*
60996381 ATTTCG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
*
60996429 ATTTTG ATTTTG ATTTAG ATTTTG ATTTTG ATTT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTT
60996463 AGGGTTATTT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 73 1.00
ACGTcount: A:0.18, C:0.01, G:0.16, T:0.65
Consensus pattern (6 bp):
ATTTTG
Found at i:60999080 original size:21 final size:21
Alignment explanation
Indices: 60999054--60999097 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
60999044 TTTATATAAG
60999054 ATTAAT-AGTAAATT-TAGAATA
1 ATTAATGA-TAAATTATA-AATA
60999075 ATTAATGATAAATTATAAATA
1 ATTAATGATAAATTATAAATA
60999096 AT
1 AT
60999098 AACACATGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.39
Consensus pattern (21 bp):
ATTAATGATAAATTATAAATA
Found at i:61000075 original size:16 final size:17
Alignment explanation
Indices: 61000054--61000087 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
61000044 AGCCAGAGAT
61000054 AAAATAAAAT-AAAATA
1 AAAATAAAATCAAAATA
*
61000070 AAAATACAATCAAAATA
1 AAAATAAAATCAAAATA
61000087 A
1 A
61000088 TAAAATTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (17 bp):
AAAATAAAATCAAAATA
Found at i:61003625 original size:15 final size:15
Alignment explanation
Indices: 61003605--61003640 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
61003595 AACCTATGAT
*
61003605 AAATATGTATTAACA
1 AAATATATATTAACA
61003620 AAATATATATTAACA
1 AAATATATATTAACA
*
61003635 ACATAT
1 AAATAT
61003641 TTAGGGTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.33
Consensus pattern (15 bp):
AAATATATATTAACA
Found at i:61004290 original size:3 final size:3
Alignment explanation
Indices: 61004282--61004346 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
61004272 ATATATATAT
61004282 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
61004330 AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AG
61004347 TTGACCTGAT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:61008598 original size:16 final size:16
Alignment explanation
Indices: 61008577--61008614 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
61008567 TTAGGACTGC
61008577 TATTTTTAA-AGTTTGT
1 TATTTTTAATA-TTTGT
61008593 TATTTTTAATATTTGT
1 TATTTTTAATATTTGT
61008609 TATTTT
1 TATTTT
61008615 AGGTGTTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 20 0.95
17 1 0.05
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (16 bp):
TATTTTTAATATTTGT
Found at i:61010095 original size:17 final size:17
Alignment explanation
Indices: 61010070--61010102 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
61010060 GGAAAAGGCA
*
61010070 TATATGACAGAAGATGC
1 TATAAGACAGAAGATGC
61010087 TATAAGACAGAAGATG
1 TATAAGACAGAAGATG
61010103 TTCGAAGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.09, G:0.24, T:0.21
Consensus pattern (17 bp):
TATAAGACAGAAGATGC
Found at i:61015141 original size:12 final size:11
Alignment explanation
Indices: 61015112--61015141 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
61015102 TTGTAAACAA
61015112 AAATAAAAAAG
1 AAATAAAAAAG
61015123 AAATAAAAAAG
1 AAATAAAAAAG
61015134 AAACTAAA
1 AAA-TAAA
61015142 GAACAAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.80, C:0.03, G:0.07, T:0.10
Consensus pattern (11 bp):
AAATAAAAAAG
Found at i:61016151 original size:45 final size:45
Alignment explanation
Indices: 61016091--61016687 Score: 150
Period size: 46 Copynumber: 13.4 Consensus size: 45
61016081 GATCTGTAAT
* *
61016091 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCAG
* * * * * * ** *
61016136 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGT-TATCAG
* * * * * ** * * *
61016179 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AGATCTGCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTAT-C-AG
* *
61016225 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCAG
* * * * * * ** *
61016270 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGT-TATCAG
* * * * * ** * * *
61016313 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AGATCTGCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTAT-C-AG
* * *
61016359 CTTCAATCTATTCCACTGCCAAATACAGGGAGGTAGAATTATCAG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCAG
* * * * * * ** *
61016404 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGT-TATCAG
* * * * * ** * * *
61016447 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AGATCTGCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTAT-C-AG
* * *
61016493 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCAG
* * * * * * * * *
61016538 TTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTACCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGT-TATCAG
** * * *** * * * *
61016581 CTTTGATCTACCCCACT-ACTGCT-TAGGGAGATA-AGATCTGTAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAG-T-TATCAG
* *
61016625 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCAG
*
61016670 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
61016688 TAGTCAGGGA
Statistics
Matches: 381, Mismatches: 143, Indels: 56
0.66 0.25 0.10
Matches are distributed among these distances:
42 47 0.12
43 70 0.18
44 31 0.08
45 96 0.25
46 125 0.33
47 12 0.03
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (45 bp):
CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCAG
Found at i:61016181 original size:88 final size:88
Alignment explanation
Indices: 61016071--61016741 Score: 292
Period size: 88 Copynumber: 7.6 Consensus size: 88
61016061 ACTATTGCTT
* ** * **
61016071 AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 AGGGAGATAAAATCTGCCATCTTCAATCTATTCCACTGCCAAATACAGGGAGGTAGAGTTATCAT
*
61016136 CTTCAATGTACTCCACTGTAGTC
66 CTTCAATCTACTCCACTGTAGTC
* * * * * * * *
61016159 AGGGAGGTAAAATCTGCCATCTTCGATCTGCTT-CGCTGCCAAATACAGGAAGGCA-AGATCTGC
1 AGGGAGATAAAATCTGCCATCTTCAATCT-ATTCCACTGCCAAATACAGGGAGGTAGAGTTAT-C
* * *
61016222 AATCTTCAATCTATTCCACTGCCAAATAC
64 -ATCTTCAATCTACTCCACTG--TAGT-C
* * ** ** * * * * * * **
61016251 AGGGAGATAGAGT-TATCGGCTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCA
1 AGGGAGATAAAATCTGCCATCTTCAATCTATTCCACTGCCAAATACAGGGAGGTAGAGT-TATCA
* * * * * *
61016312 TCTTCGATCTGCTTCGCTGCCAAATAC
65 TCTTCAATCTACTCCACTG--TAGT-C
* ** * * * *
61016339 AGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGGTAGAATTATCAG
1 AGGGAGATAAAATCTGCCATCTTCAATCTATTCCACTGCCAAATACAGGGAGGTAGAGTTATCAT
*
61016404 CTTCAATGTACTCCACTGTAGTC
66 CTTCAATCTACTCCACTGTAGTC
* * * * * * * *
61016427 AGGGAGGTAAAATCTGCCATCTTCGATCTGCTT-CGCTGCCAAATACAGGAAGGCA-AGATCTGC
1 AGGGAGATAAAATCTGCCATCTTCAATCT-ATTCCACTGCCAAATACAGGGAGGTAGAGTTAT-C
* * *
61016490 AATCTTCAATCTATTCCACTGCCAAATAC
64 -ATCTTCAATCTACTCCACTG--TAGT-C
* * ** * * * * * * *
61016519 AGGGAGATAGAAT-TATCGGT-TTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTACC
1 AGGGAGATAAAATCT-GCCATCTTCAATCTATTCCACTGCCAAATACAGGGAGGTAGAGT-TATC
** * * *
61016579 ATCTTTGATCTACCCCACTACT-GCTT
64 ATCTTCAATCTACTCCACT-GTAG-TC
* ** * **
61016605 AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 AGGGAGATAAAATCTGCCATCTTCAATCTATTCCACTGCCAAATACAGGGAGGTAGAGTTATCAT
*
61016670 CTTCAATGTACTCCACTGTAGTC
66 CTTCAATCTACTCCACTGTAGTC
* * * *
61016693 AGGGAGGTAAAATCTGCCATCTTCGATCTGCTT-CTCTGCCAAATACAGG
1 AGGGAGATAAAATCTGCCATCTTCAATCT-ATTCCACTGCCAAATACAGG
61016742 AAGGCAAGAT
Statistics
Matches: 410, Mismatches: 141, Indels: 64
0.67 0.23 0.10
Matches are distributed among these distances:
86 12 0.03
87 24 0.06
88 190 0.46
89 85 0.21
90 15 0.04
91 46 0.11
92 38 0.09
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (88 bp):
AGGGAGATAAAATCTGCCATCTTCAATCTATTCCACTGCCAAATACAGGGAGGTAGAGTTATCAT
CTTCAATCTACTCCACTGTAGTC
Found at i:61016244 original size:46 final size:46
Alignment explanation
Indices: 61016079--61016524 Score: 255
Period size: 46 Copynumber: 10.0 Consensus size: 46
61016069 TTAGGGAGAT
* **
61016079 AAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGAT
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGGC
* * ** * * * * *
61016125 AGAGTTAT-C-GGCTTCAATGTACTCCACTG--TAGT-CAGGGAGGT
1 A-AGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGGC
* * * * * *
61016167 AAAATCTGCCATCTTCGATCTGCTT-CGCTGCCAAATACAGGAAGGC
1 AAGATCTGCAATCTTCAATCT-ATTCCACTGCCAAATACAGGGAGGC
**
61016213 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGAT
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGGC
* * ** * * * * *
61016259 AGAGTTAT-C-GGCTTCAATGTACTCCACTG--TAGT-CAGGGAGGT
1 A-AGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGGC
* * * * * *
61016301 AAAATCTGCCATCTTCGATCTGCTT-CGCTGCCAAATACAGGAAGGC
1 AAGATCTGCAATCTTCAATCT-ATTCCACTGCCAAATACAGGGAGGC
61016347 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGG-
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGGC
* * * * * * * *
61016392 TAGAAT-TATC-AGCTTCAATGTACTCCACTG--TAGT-CAGGGAGGT
1 AAG-ATCT-GCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGGC
* * * * * *
61016435 AAAATCTGCCATCTTCGATCTGCTT-CGCTGCCAAATACAGGAAGGC
1 AAGATCTGCAATCTTCAATCT-ATTCCACTGCCAAATACAGGGAGGC
61016481 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAG
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAG
61016525 ATAGAATTAT
Statistics
Matches: 287, Mismatches: 87, Indels: 52
0.67 0.20 0.12
Matches are distributed among these distances:
41 6 0.02
42 31 0.11
43 42 0.15
44 3 0.01
45 64 0.22
46 133 0.46
47 8 0.03
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (46 bp):
AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGGC
Found at i:61016255 original size:134 final size:134
Alignment explanation
Indices: 61016079--61016761 Score: 1154
Period size: 134 Copynumber: 5.1 Consensus size: 134
61016069 TTAGGGAGAT
*
61016079 AAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
61016144 TACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGA
66 TACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGA
61016209 AGGC
131 AGGC
61016213 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
61016278 TACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGA
66 TACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGA
61016343 AGGC
131 AGGC
* * *
61016347 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGGTAGAATTATCAGCTTCAATG
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
61016412 TACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGA
66 TACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGA
61016477 AGGC
131 AGGC
* *
61016481 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGTTTCAATG
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
* * * ** * * *** * *
61016546 TACTCCACTGTAGTCAGGGAGGTAAAATCTACCATCTTTGATCTACCCCACT-ACTGCT-TAGGG
66 TACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGA
**
61016609 AGAT
131 AGGC
*
61016613 AAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
*
61016678 TACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCTCTGCCAAATACAGGA
66 TACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGA
61016743 AGGC
131 AGGC
61016747 AAGATCTGCAATCTT
1 AAGATCTGCAATCTT
61016762 TGATCTACTT
Statistics
Matches: 508, Mismatches: 39, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
132 113 0.22
133 4 0.01
134 391 0.77
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (134 bp):
AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
TACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGA
AGGC
Found at i:61016478 original size:268 final size:266
Alignment explanation
Indices: 61016003--61016761 Score: 1167
Period size: 268 Copynumber: 2.8 Consensus size: 266
61015993 AGAACTACCA
* *** * * * * * ***
61016003 GCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCCGTCGTCTTCAATTTGCTCCACTATTG
1 GCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTACCATCTTCGATCTACCCCACTACAA
* * * *
61016068 CTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTAT
66 ATCAGGAAGACAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTAT
61016133 CGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGC
131 CGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGC
*
61016198 CAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAG
196 CAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAA
61016263 TTATCG
261 TTATCG
* * ** * *
61016269 GCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCA
1 GCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTACCATCTTCGATCTACCCCACT-ACA
* * * *
61016334 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGGTAGAATT
65 AAT-CAGGAAGACAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTT
*
61016399 ATCAGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCT
129 ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCT
61016464 GCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAG
194 GCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAG
61016529 AATTATCG
259 AATTATCG
* * **
61016537 GTTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTACCATCTTTGATCTACCCCACTACTG
1 GCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTACCATCTTCGATCTACCCCACTACAA
* * * *
61016602 CTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTAT
66 ATCAGGAAGACAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTAT
*
61016667 CGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCTCTGC
131 CGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGC
61016732 CAAATACAGGAAGGCAAGATCTGCAATCTT
196 CAAATACAGGAAGGCAAGATCTGCAATCTT
61016762 TGATCTACTT
Statistics
Matches: 449, Mismatches: 42, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
266 202 0.45
267 3 0.01
268 244 0.54
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (266 bp):
GCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTACCATCTTCGATCTACCCCACTACAA
ATCAGGAAGACAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTAT
CGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGC
CAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAA
TTATCG
Found at i:61016797 original size:44 final size:44
Alignment explanation
Indices: 61016704--61017151 Score: 327
Period size: 44 Copynumber: 10.2 Consensus size: 44
61016694 GGGAGGTAAA
* * * *
61016704 ATCTGCCATCTTCGATCTGCTTCTCTGCCAAATACAGGAAGGCAAG
1 ATCTGCTATCTTCGATCTACTTC-ATGCC-AATACAGGAAGACAAG
* * * *
61016750 ATCTGCAATCTTTGATCTACTTCATGCCAATACATGAAGATAAG
1 ATCTGCTATCTTCGATCTACTTCATGCCAATACAGGAAGACAAG
* **
61016794 ATCTGCTTTCTTCGATCTACTTC--GCCACCAGTATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCATGCCA--A-TACAGGAAGACAAG
* * * * * * **
61016839 ATCTGC-ATCGTCAATCCACTTCCTACCAATATAGGAAGACCGG
1 ATCTGCTATCTTCGATCTACTTCATGCCAATACAGGAAGACAAG
* * * * *
61016882 ACCTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCATGCCAATACAGGAAGACAAG
* * * *
61016926 ATCTGCTTTCTTCGATCTACTTCCTACCAATATAGGAAGAC-AG
1 ATCTGCTATCTTCGATCTACTTCATGCCAATACAGGAAGACAAG
* * * *
61016969 AATCTGC-ATCTTCGATCTACTTCACGCCAATACATGAAAATAAG
1 -ATCTGCTATCTTCGATCTACTTCATGCCAATACAGGAAGACAAG
* **
61017013 ATCTGCTTTCTTCGATCTACTTC--GCCACCAGTATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCATGCCA--A-TACAGGAAGACAAG
* * * * * * **
61017058 ATCTGC-ATCGTCGATCCACTTCCTACCAATATAGGAAAACCGG
1 ATCTGCTATCTTCGATCTACTTCATGCCAATACAGGAAGACAAG
* * * * *
61017101 ACCTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCATGCCAATACAGGAAGACAAG
61017145 ATCTGCT
1 ATCTGCT
61017152 TTAATGACTT
Statistics
Matches: 306, Mismatches: 81, Indels: 32
0.73 0.19 0.08
Matches are distributed among these distances:
42 8 0.03
43 63 0.21
44 174 0.57
45 35 0.11
46 26 0.08
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTACTTCATGCCAATACAGGAAGACAAG
Found at i:61017016 original size:219 final size:222
Alignment explanation
Indices: 61016712--61017153 Score: 766
Period size: 219 Copynumber: 2.0 Consensus size: 222
61016702 AAATCTGCCA
* * * * *
61016712 TCTTCGATCTGCTTCTCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTTGATCTACTTCATGC
1 TCTTCGATCTACTTCTCTACCAAATACAGGAAGACAAGATCTGCAATCTTCGATCTACTTCACGC
*
61016777 CAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATC
66 CAATACATGAAAATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATC
*
61016842 TGCATCGTCAATCCACTTCCTACCAATATAGGAAGACCGGACCTGTTATCTTTGATCTACTTCAC
131 TGCATCGTCAATCCACTTCCTACCAATATAGGAAAACCGGACCTGTTATCTTTGATCTACTTCAC
61016907 GCCAATACATGAAGACAAGATCTGCTT
196 GCCAATACATGAAGACAAGATCTGCTT
*
61016934 TCTTCGATCTACTTC-CTACC-AATATAGGAAGAC-AGAATCTGC-ATCTTCGATCTACTTCACG
1 TCTTCGATCTACTTCTCTACCAAATACAGGAAGACAAG-ATCTGCAATCTTCGATCTACTTCACG
61016995 CCAATACATGAAAATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
65 CCAATACATGAAAATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
*
61017060 CTGCATCGTCGATCCACTTCCTACCAATATAGGAAAACCGGACCTGTTATCTTTGATCTACTTCA
130 CTGCATCGTCAATCCACTTCCTACCAATATAGGAAAACCGGACCTGTTATCTTTGATCTACTTCA
61017125 CGCCAATACATGAAGACAAGATCTGCTT
195 CGCCAATACATGAAGACAAGATCTGCTT
61017153 T
1 T
61017154 AATGACTTCA
Statistics
Matches: 210, Mismatches: 9, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
219 175 0.83
220 17 0.08
221 4 0.02
222 14 0.07
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (222 bp):
TCTTCGATCTACTTCTCTACCAAATACAGGAAGACAAGATCTGCAATCTTCGATCTACTTCACGC
CAATACATGAAAATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATC
TGCATCGTCAATCCACTTCCTACCAATATAGGAAAACCGGACCTGTTATCTTTGATCTACTTCAC
GCCAATACATGAAGACAAGATCTGCTT
Found at i:61018173 original size:7 final size:7
Alignment explanation
Indices: 61018157--61018206 Score: 61
Period size: 7 Copynumber: 7.4 Consensus size: 7
61018147 TGGCCTCTCC
61018157 TTTTTC-
1 TTTTTCT
61018163 TTTTTCT
1 TTTTTCT
61018170 TTTTTC-
1 TTTTTCT
61018176 -TTTTCT
1 TTTTTCT
61018182 TTTTTCAT
1 TTTTTC-T
*
61018190 TTTTTCA
1 TTTTTCT
61018197 TTTTTCT
1 TTTTTCT
61018204 TTT
1 TTT
61018207 CATTTTTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
5 5 0.13
6 6 0.16
7 20 0.53
8 7 0.18
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTCT
Found at i:61018173 original size:12 final size:13
Alignment explanation
Indices: 61018157--61018213 Score: 64
Period size: 12 Copynumber: 4.4 Consensus size: 13
61018147 TGGCCTCTCC
*
61018157 TTTTTCTTTTTCT
1 TTTTTCTTTTTCA
*
61018170 TTTTTC-TTTTCT
1 TTTTTCTTTTTCA
61018182 TTTTTCATTTTTTCA
1 TTTTTC--TTTTTCA
61018197 TTTTTC-TTTTCA
1 TTTTTCTTTTTCA
61018209 TTTTT
1 TTTTT
61018214 TTTCAAGTGA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
12 23 0.57
13 6 0.15
15 11 0.28
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTCTTTTTCA
Found at i:61018213 original size:7 final size:6
Alignment explanation
Indices: 61018156--61018206 Score: 50
Period size: 6 Copynumber: 7.8 Consensus size: 6
61018146 TTGGCCTCTC
61018156 CTTTTT CTTTTT CTTTTT -TCTTTT CTTTTTT CATTTTTT CATTTTT CTTTT
1 CTTTTT CTTTTT CTTTTT CT-TTTT C-TTTTT C--TTTTT C-TTTTT CTTTT
61018207 CATTTTTTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
5 1 0.03
6 20 0.50
7 11 0.28
8 8 0.20
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (6 bp):
CTTTTT
Found at i:61018652 original size:11 final size:11
Alignment explanation
Indices: 61018633--61018696 Score: 58
Period size: 11 Copynumber: 5.6 Consensus size: 11
61018623 GACGTTTTTC
* *
61018633 TTTTATTTGGT
1 TTTTTTTTGCT
61018644 TTTTTTTTGCT
1 TTTTTTTTGCT
61018655 TTTTATTTT-CT
1 TTTT-TTTTGCT
* *
61018666 CGTTTTTTTACT
1 -TTTTTTTTGCT
61018678 TTTTTTTTGTCT
1 TTTTTTTTG-CT
61018690 TTTTTTT
1 TTTTTTT
61018697 GCCTCCACTG
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
11 26 0.59
12 18 0.41
ACGTcount: A:0.05, C:0.08, G:0.08, T:0.80
Consensus pattern (11 bp):
TTTTTTTTGCT
Found at i:61018661 original size:22 final size:23
Alignment explanation
Indices: 61018633--61018698 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 23
61018623 GACGTTTTTC
*
61018633 TTTTATTTGGT-TTTTTTTTGCT
1 TTTTATTTTGTCTTTTTTTTGCT
* * *
61018655 TTTTATTTTCTCGTTTTTTTACT
1 TTTTATTTTGTCTTTTTTTTGCT
61018678 TTTT-TTTTGTCTTTTTTTTGC
1 TTTTATTTTGTCTTTTTTTTGC
61018699 CTCCACTGAA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 23 0.64
23 13 0.36
ACGTcount: A:0.05, C:0.09, G:0.09, T:0.77
Consensus pattern (23 bp):
TTTTATTTTGTCTTTTTTTTGCT
Found at i:61026265 original size:12 final size:11
Alignment explanation
Indices: 61026236--61026265 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
61026226 TTGTAAACAA
61026236 AAATAAAAAAG
1 AAATAAAAAAG
61026247 AAATAAAAAAG
1 AAATAAAAAAG
61026258 AAACTAAA
1 AAA-TAAA
61026266 GAACAAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.80, C:0.03, G:0.07, T:0.10
Consensus pattern (11 bp):
AAATAAAAAAG
Found at i:61029532 original size:22 final size:23
Alignment explanation
Indices: 61029491--61029536 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
61029481 TAAATGACAA
61029491 TGGAATTAGTTCAAAAAAATGCT
1 TGGAATTAGTTCAAAAAAATGCT
61029514 TGGAATTAGTTC-AAAAAATGCT
1 TGGAATTAGTTCAAAAAAATGCT
61029536 T
1 T
61029537 ACATCAATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.33
Consensus pattern (23 bp):
TGGAATTAGTTCAAAAAAATGCT
Found at i:61033251 original size:3 final size:3
Alignment explanation
Indices: 61033245--61033271 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
61033235 CAGCAGCAGC
61033245 AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA
61033272 TGTTGAAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:61033791 original size:20 final size:21
Alignment explanation
Indices: 61033754--61033796 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
61033744 TTCTTTTGAA
61033754 AATAAAATATTATAAAAA-TT
1 AATAAAATATTATAAAAAGTT
* * *
61033774 AATAAATTATTTTTAAAAGTT
1 AATAAAATATTATAAAAAGTT
61033795 AA
1 AA
61033797 ATTTATGCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
AATAAAATATTATAAAAAGTT
Found at i:61033957 original size:16 final size:15
Alignment explanation
Indices: 61033936--61033967 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
61033926 TTTCAAATAT
61033936 ATAATAATTATAAAAA
1 ATAATAA-TATAAAAA
61033952 ATAATAATATAAAAA
1 ATAATAATATAAAAA
61033967 A
1 A
61033968 CTTGACATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
ATAATAATATAAAAA
Found at i:61037586 original size:213 final size:213
Alignment explanation
Indices: 61037219--61041015 Score: 4395
Period size: 213 Copynumber: 17.8 Consensus size: 213
61037209 CAACTATTTC
*
61037219 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAATTGTTCAA-ACTC
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATAC-C
* * **
61037283 AACTCCAT-AAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGTTGTTCCGCTTA
65 AATTCC-TCAAGACCAATAAGATTTTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTA
*
61037347 AATCAAGATCCCTCAAACTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
129 AATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
61037412 CCTTGAAGTGTTAATCTCTT
194 CCTTGAAGTGTTAATCTCTT
* * * *
61037432 AAGAGATTTCAATTTATAAAAGTTGTCAGGAAGGCAAAGAAGGTTTTCACAATTGTTCACTACCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* *
61037497 ATTCCTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGCCGTTCCACTTAAA
66 ATTCCTCAAGACCAATAAGATTTTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
*
61037562 TCAAGATCCCTCAATCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAACC
131 TCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAACC
61037627 TTGAAGTGTTAATCTCTT
196 TTGAAGTGTTAATCTCTT
* * * * *
61037645 AAGAGATTTCAATTTATAAAAGTTGTCAGGAAGACAAACAAGATTTTCATAATTGTTCAATACCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* * *
61037710 ATTCCTCAAGACCAATAAGATTTTCTATTGAGGATAGTAATTCCTTCAAAG-TGTTCCGCTTAAA
66 ATTCCTCAAGACCAATAAGATTTTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* * *
61037774 TCAAGATCGCTCAACCTCTCCATGGTCTCTTAAGATTTTTGGAAAAATCTCAAATCTCGAGCAAC
131 TCAAGATCCCTCAACCTCTCCATGGTCTC-TAAGATTTCTGGAAAAATCTCCAATCTCGAGCAAC
*
61037839 CTTGAAGTGTTAATCTCTC
195 CTTGAAGTGTTAATCTCTT
* ** *
61037858 AAGAGATTTCAATTTATAAAAGCTGTCAAGAATACAAATAAGGTTTTCACAGTTGTTCAA-ACTC
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATAC-C
* * * *
61037922 AACTT-CACAAGACCAATAAGATTGTCAATTGAGGAGGGTAATTCCTTCAAAGCCGTTCTGCTTA
65 AA-TTCCTCAAGACCAATAAGATTTTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTA
* * * * * * * * *
61037986 AATTAAGCTTCATCAACATCACCATAGTGTCCAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
129 AATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
* ** * *
61038051 CCTTTTAAGAT-CCAATTTCTC
194 CC-TTGAAG-TGTTAATCTCTT
* * * * * *
61038072 AAGAAATTTCAATTTACAAAAGCTGTTAGGAAGACAAACAAGGTTTTCACAGTTGTCCAATATCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* ** * *
61038137 ACTT-CACAAGACCAATAAGATTGCCAATTAATGG-TGGTAATTCCTTCAAAGCCATTCCGCTTA
66 A-TTCCTCAAGACCAATAAGATTTTCAATTGA-GGATGGTAATTCCTTCAAAGCCGTTCCGCTTA
* * *
61038200 AATCAAGCTCCCTCAACCTCTCCATCGTCTCTAAGATTTCTGGAAATATCTCCAATCTCGAGCAA
129 AATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
* ** * *
61038265 CCTTTAAGAT-CCAATTTCTC
194 CCTTGAAG-TGTTAATCTCTT
* * * * * * * *
61038285 AAGAAATTTCAATTTACAAAAGCTGTCAAGAAGGAAAACAAAGTTTTCACATTTGTCCAATATCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* * ** * * * *
61038350 AATACTTGAGACCAATAAGATTTTCTATTGAGGTTGGTAATTCTTTCAAAGTCGTTCCGCTTAAA
66 ATTCCTCAAGACCAATAAGATTTTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* * * *
61038415 TCAAGATCCGTCAACAT-TCCATGGTCTCTAAGATTTCTGGGAAAATCTCCAATCACGAGCAACC
131 TCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAACC
*
61038479 TTGAAGTGTGAATCTCTT
196 TTGAAGTGTTAATCTCTT
* **
61038497 AAGAGATTTCAATTTATAAAAGCTATCAGGAAGGCAAACAAGGTTTTCGTAGTTGTTCAA-ACTC
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATAC-C
* ** * * *
61038561 AAATCCTCAAGACCAATAAGATTGCCAATTGAGGATGGCAATTCCATCAAAGTCC-TTACGCTTA
65 AATTCCTCAAGACCAATAAGATTTTCAATTGAGGATGGTAATTCCTTCAAAG-CCGTTCCGCTTA
* * * * * * * *
61038625 AATCAAGATCACTAAACATCTCCACGGTGTCTATGACTTCTGGGAAAATCTCCAATCTCGAGCAA
129 AATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
* * *
61038690 CCTTCAAGATCG--AATATGTT
194 CCTTGAAG-T-GTTAATCTCTT
* * * *
61038710 TAGAGATTTCAGTTTATAAAAGTTGTCAGGAAGGCAAACAAGGTTTTCACAGTT-TTCCAATATC
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTT-CAATACC
* * * * * *
61038774 AAATACTCAAGACCAATAAGATTTTCTACTGAGGAGGGTAATTCCTTCAAAGCCGTTCCGCTTAG
65 AATTCCTCAAGACCAATAAGATTTTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAA
* *
61038839 ATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGGAAAATCTCCAATCTCGAGCAAT
130 ATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAAC
61038904 CTTGAAGTGTTAATCTCTT
195 CTTGAAGTGTTAATCTCTT
* *
61038923 AAGAGATTTCAATTTATAAAAGTTGTCAGGAAGGCAAACAAGGTTTTCACAATTGTTCAATACCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* * * *
61038988 ATTCCTCAAGACCAATAAGATTATCGATTGAGGATGGTAATTCCTTCAAAGCCGTT-TGATCTAA
66 ATTCCTCAAGACCAATAAGATTTTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCT-TAA
* * * * *
61039052 ATCAAGA-CGCCTCAACCTCTCCATGGTGTCCATGATTTCTGGGAAAGTCTCCAATCTCGAGCAA
130 ATCAAGATC-CCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
61039116 CCTTGAAGTGTTAATCTCTT
194 CCTTGAAGTGTTAATCTCTT
* * * * *
61039136 AAGAGATTTCAATTTATAAAAGTTGTCAGGAAGACAAACAAGATTTTCATAATTGTTCAATACCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* * *
61039201 ATTCCTCAAGACCAATAAGATTTTCTATTGAGGATAGTAATTCCTTCAAAG-TGTTCCGCTTAAA
66 ATTCCTCAAGACCAATAAGATTTTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* * *
61039265 TCAAGATCGCTCAACCTCTCCATGGTCTCTTAAGATTTTTGGAAAAATCTCAAATCTCGAGCAAC
131 TCAAGATCCCTCAACCTCTCCATGGTCTC-TAAGATTTCTGGAAAAATCTCCAATCTCGAGCAAC
*
61039330 CTTGAAGTGTTAATCTCTC
195 CTTGAAGTGTTAATCTCTT
* ** *
61039349 AAGAGATTTCAATTTATAAAAGCTGTCAAGAATACAAATAAGGTTTTCACAGTTGTTCAA-ACTC
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATAC-C
* * * *
61039413 AACTT-CACAAGACCAATAAGATTGTCAATTGAGGAGGGTAATTCCTTCAAAGCCGTTCTGCTTA
65 AA-TTCCTCAAGACCAATAAGATTTTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTA
* * * * * * * * *
61039477 AATTAAGCTTCATCAACATCACCATAGTGTCCAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
129 AATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
* ** * *
61039542 CCTTTTAAGAT-CCAATTTCTC
194 CC-TTGAAG-TGTTAATCTCTT
* * * * * *
61039563 AAGAAATTTCAATTTACAAAAGCTGTTAGGAAGACAAACAAGGTTTTCACAGTTGTCCAATATCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* ** * *
61039628 ACTT-CACAAGACCAATAAGATTGCCAATTAATGG-TGGTAATTCCTTCAAAGCCATTCCGCTTA
66 A-TTCCTCAAGACCAATAAGATTTTCAATTGA-GGATGGTAATTCCTTCAAAGCCGTTCCGCTTA
* * * *
61039691 AATCAAGCTCCCCCAACCTCTCCATCGTCTCTAAGATTTCTGGAAATATCTCCAATCTCGAGCAA
129 AATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
* ** * *
61039756 CCTTTAAGAT-CCAATTTCTC
194 CCTTGAAG-TGTTAATCTCTT
* * * * * * *
61039776 AAGAAATTTCAATTTACAAAAGCTGTCAAGAAGGAAAACAAAGTTTTCACAGTTGTCCAATATCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* * ** * * * *
61039841 AATACTTGAGACCAATAAGATTTTCTATTGAGGTTGGTAATTCTTTCAAAGTCGTTCCGCTTAAA
66 ATTCCTCAAGACCAATAAGATTTTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* * * *
61039906 TCAAGATCCGTCAACATCTCCATGGTCTCTAAGATTTCTGGGAAAATCTCCAATCACGAGCAACC
131 TCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAACC
*
61039971 TTGAAGTGTGAATCTCTT
196 TTGAAGTGTTAATCTCTT
* **
61039989 AAGAGATTTCAATTTATAAAAGCTATCAGGAAGGCAAACAAGGTTTTCGTAGTTGTTCAA-ACTC
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATAC-C
* ** * * *
61040053 AAATCCTCAAGACCAATAAGATTGCCAATTGAGGATGGCAATTCCATCAAAGTCC-TTGCGCTTA
65 AATTCCTCAAGACCAATAAGATTTTCAATTGAGGATGGTAATTCCTTCAAAG-CCGTTCCGCTTA
* * * * * * * *
61040117 AATCAAGATCACTAAACATCTCCACGGTGTCTATGACTTCTGGGAAAATCTCCAATCTCGAGCAA
129 AATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
* * * *
61040182 CCTTCAAGAT-TGAATATGTT
194 CCTTGAAG-TGTTAATCTCTT
* * * *
61040202 TAGAGATTTCAGTTTATAAAAGTTGTCAGGAAGGCAAACAAGGTTTTCACAGTT-TTCCAATATC
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTT-CAATACC
* * * * * *
61040266 AAATACTCAAGACCAATAAGATTTTCTACTGAGGAGGGTAATTCCTTCAAAGCCGTTCCGCTTAG
65 AATTCCTCAAGACCAATAAGATTTTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAA
* *
61040331 ATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGGAAAATCTCCAATCTCGAGCAAT
130 ATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAAC
61040396 CTTGAAGTGTTAATCTCTT
195 CTTGAAGTGTTAATCTCTT
* * *
61040415 AAGAGATTTCAATTTATAAAAGTTGTCAGGAAGGCAAACAAGGTTTTCACAATTGTTTAATACCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* * * *
61040480 ATTCCTCAAGACCAATAAGATTATCGATTGAGGATGGTAATTCCTTCAAAGCCGTT-TGATCTAA
66 ATTCCTCAAGACCAATAAGATTTTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCT-TAA
* * * * *
61040544 ATCAAGA-CGCCTCAACCTCTCCATGGTGTCCATGATTTCTGGGAAAGTCTCCAATCTCGAGCAA
130 ATCAAGATC-CCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
* **** *
61040608 CCTTCAAGACAAAATATCTT
194 CCTTGAAGTGTTAATCTCTT
* * * * * **
61040628 GAGAGATTTCAATTTATAAAAGCTATCAGGAAGGCAAATAAGGTTTTTACAGTTTTTCAATTTCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* * * * * * *
61040693 AATCCACAAGACTAATAAGATTATCAATTGAGGATGGTAATTCCTTCAAATCTGATCC-CTTTAA
66 ATTCCTCAAGACCAATAAGATTTTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGC-TTAA
* * * * * * *
61040757 ATCAAGTTCCCTCAACATCTCCATGTTGTCTATGATTTCTGGGAAAGTCTCCAATCTCGAGCAAC
130 ATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAAC
*
61040822 CTTTAAGATAG--AATCTCTT
195 CTTGAAG-T-GTTAATCTCTT
* * * * * * *
61040841 GAGAGATTTCAATTTATAAAAGCTGTCAGAAAGACAAACAAGCTTTTTATAGTTTTTCAAT-CTC
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATAC-C
* * * *
61040905 AATTGCTTAAGACCGATAAGGTTTTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAA
65 AATTCCTCAAGACCAATAAGATTTTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAA
* * * * * *
61040970 ATAAAGATGCCTCAAACTCTCCATGGTGTCCATGATTTCTGGAAAA
130 ATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAA
61041016 CTATACAGAT
Statistics
Matches: 3106, Mismatches: 422, Indels: 112
0.85 0.12 0.03
Matches are distributed among these distances:
211 3 0.00
212 270 0.09
213 2385 0.77
214 439 0.14
215 9 0.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (213 bp):
AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
ATTCCTCAAGACCAATAAGATTTTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
TCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAACC
TTGAAGTGTTAATCTCTT
Found at i:61050251 original size:213 final size:213
Alignment explanation
Indices: 61048099--61050182 Score: 3267
Period size: 213 Copynumber: 9.8 Consensus size: 213
61048089 AAGACACAAA
* * * * * * * *
61048099 AGAGATTTCAATTTAAAAAAGCTGTCAAGAAAGCAAACAAAGTTTTCACAGTCGTTCA-AGCTCA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATA-TTCA
* * *
61048163 AATACTTAAGACCAACAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
65 AATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* * *
61048228 TCAAGTTCATACAACCTCTCCATGGTGTCTATGATTTCCGGGAAAATCTCCAATCTCAAGCAACC
130 TCAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACC
* * ** * ** *
61048293 ATGAAGACGGAATGTTGTA
195 TTTAAGATAGAATCTCCTG
* *
61048312 AGAGATTTCAATTTACAAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
*
61048377 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCTGTTCCGCTTAAAT
66 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
*
61048442 CAAGTTCATACAACCTCTTCATGGTGTCCAAGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
131 CAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
61048507 TTAAGATAGAATCTCCTG
196 TTAAGATAGAATCTCCTG
*
61048525 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGCTTTTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
*
61048590 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCTGTTCCGCTTAAAT
66 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
61048655 CAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
131 CAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
61048720 TTAAGATAGAATCTCCTG
196 TTAAGATAGAATCTCCTG
*
61048738 AGAGATTTCAATTTATAAAAGCTGCCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
*
61048803 ATCCTTAAGACCAATAAGATTGCCAATTGGGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
66 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
* * *
61048868 CAAGTTCGTACAACATCTTCATGGTGTCCATGATTTCTGGGAAAATCTCCAATCTCGAGCAACCT
131 CAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
*
61048933 TTAAGATAGAATCTCTTG
196 TTAAGATAGAATCTCCTG
*
61048951 AGAGATTTCAATTTATAAAAGTTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
*
61049016 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTTCGCTTAAAT
66 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
* *
61049081 CAAGTTCGTACAACATCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
131 CAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
*
61049146 TTAAGATAGAATCT-CTCC
196 TTAAGATAGAATCTCCT-G
* * *
61049164 AGGGATTTCAATTTACAAAAGCTGTCAGGAAGGAAAACAAGGCTTTTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
* *
61049229 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCTGTTCCACTTAAAT
66 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
* * *
61049294 CAAGTTCATACAACCTCTTCACGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCAAGCAACCA
131 CAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
* ** * ** *
61049359 TGAAGACGGAATGTTGTA
196 TTAAGATAGAATCTCCTG
* *
61049377 AGAGATTTCAATTTACAAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
* *
61049442 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCTGTTTCGCTTAAAT
66 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
*
61049507 CAAGTTCATACAACCTCTTCATGGTGTCCAAGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
131 CAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
61049572 TTAAGATAGAATCTCCTG
196 TTAAGATAGAATCTCCTG
*
61049590 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAAGTTTTTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
* *
61049655 ATCCTTAAGACCAATAAGATTGCCAATCGAGGATGGTAATTCCTTCAAAGCCGTTCCACTTAAAT
66 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
* * *
61049720 CAAGTTCATACAACCACTCCATGGTGTCCATGATTTCTGGGAAAATCTCCAATCTCGAGCAACCT
131 CAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
* * **
61049785 TGAAGATAAAATCTCGAG
196 TTAAGATAGAATCTCCTG
* *
61049803 AGAGATTTCAATTTACAAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
* * *
61049868 A-CGCATAAGACCAATAAGATTGCCAATTGAGGATGGTATTTCCTTCAAAGCTGTTCCGCTTAAA
66 ATC-CTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* * *
61049932 TCAAGTTCGTACAACCACTCCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACC
130 TCAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACC
* * ** * * *
61049997 ATGAAGACGGAATGTCGTA
195 TTTAAGATAGAATCTCCTG
*
61050016 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
** *
61050081 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCATTTAAAA
66 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
* * * * *
61050146 CAAGATGCCT-CAAACTCTCCATGGTGCCCATGATTTC
131 CAAG-TTCATACAACCTCTTCATGGTGTCCATGATTTC
61050183 TGGAAAACTA
Statistics
Matches: 1745, Mismatches: 120, Indels: 12
0.93 0.06 0.01
Matches are distributed among these distances:
212 2 0.00
213 1737 1.00
214 6 0.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (213 bp):
AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
CAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
TTAAGATAGAATCTCCTG
Found at i:61059745 original size:16 final size:16
Alignment explanation
Indices: 61059724--61059766 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
61059714 TAGGATCTGA
61059724 GAACAAAGAATAAATC
1 GAACAAAGAATAAATC
61059740 GAACAAAGAATAAATC
1 GAACAAAGAATAAATC
61059756 GAACAAAGAAT
1 GAACAAAGAAT
61059767 GAAAAAAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.63, C:0.12, G:0.14, T:0.12
Consensus pattern (16 bp):
GAACAAAGAATAAATC
Found at i:61062057 original size:22 final size:22
Alignment explanation
Indices: 61062032--61062101 Score: 115
Period size: 22 Copynumber: 3.2 Consensus size: 22
61062022 AAATTCAATA
61062032 TCAATTTCCTTCAAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
61062054 TCAA-TTCCGTTCAAAAATTCTC
1 TCAATTTCC-TTCAAAAATTCTC
*
61062076 TCAATTTCCTTCCAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
61062098 TCAA
1 TCAA
61062102 ACTCTCAAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
21 4 0.09
22 37 0.82
23 4 0.09
ACGTcount: A:0.31, C:0.29, G:0.01, T:0.39
Consensus pattern (22 bp):
TCAATTTCCTTCAAAAATTCTC
Found at i:61062107 original size:30 final size:30
Alignment explanation
Indices: 61062073--61062131 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
61062063 TTCAAAAATT
* *
61062073 CTCTCAATTTCCTTCCAAAATTCTCTCAAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAAA
61062103 CTCTCAAATTCCTTCCAAAATCCTCTCAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAA
61062132 TTTCCTTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.36, G:0.00, T:0.34
Consensus pattern (30 bp):
CTCTCAAATTCCTTCCAAAATCCTCTCAAA
Found at i:61062123 original size:52 final size:51
Alignment explanation
Indices: 61062051--61062153 Score: 145
Period size: 52 Copynumber: 2.0 Consensus size: 51
61062041 TTCAAAAATT
* * *
61062051 CTCTCAATTCCGTTCAAAAATTCTCTCAATTTCCTTCCAAAATTCTCTCAAA
1 CTCTCAATTCCGTTCAAAAATCCTCTCAATTTCCTTCAAAAAATCTC-CAAA
*
61062103 CTCTCAAATTCC-TTCCAAAATCCTCTCAATTTCCTTCAAAAAATCTCCAAA
1 CTCTC-AATTCCGTTCAAAAATCCTCTCAATTTCCTTCAAAAAATCTCCAAA
61062154 TCCATATTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
51 4 0.09
52 36 0.78
53 6 0.13
ACGTcount: A:0.33, C:0.32, G:0.01, T:0.34
Consensus pattern (51 bp):
CTCTCAATTCCGTTCAAAAATCCTCTCAATTTCCTTCAAAAAATCTCCAAA
Found at i:61062142 original size:21 final size:22
Alignment explanation
Indices: 61062103--61062144 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
61062093 TTCTCTCAAA
61062103 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCCAAAATC
* *
61062125 CTCTCAATTTCCTTCAAAAA
1 CTCTCAAATTCCTTCCAAAA
61062145 ATCTCCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (22 bp):
CTCTCAAATTCCTTCCAAAATC
Done.