Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 209 of 226
Found at i:62367056 original size:24 final size:24
Alignment explanation
Indices: 62367024--62367078 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 24
62367014 AATTGAAACC
*
62367024 TTTTCTCTTT-TTTCTTCTTCTTTT
1 TTTTTTCTTTCTTTC-TCTTCTTTT
62367048 TTTTTTCTTTCTTTCTCTTCTTTT
1 TTTTTTCTTTCTTTCTCTTCTTTT
62367072 TCTTTTT
1 T-TTTTT
62367079 TGGCCTGTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 19 0.68
25 9 0.32
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (24 bp):
TTTTTTCTTTCTTTCTCTTCTTTT
Found at i:62367079 original size:27 final size:26
Alignment explanation
Indices: 62367024--62367078 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 26
62367014 AATTGAAACC
62367024 TTTTCTCTTTTTTCTTCTTCTTTTTT
1 TTTTCTCTTTTTTCTTCTTCTTTTTT
*
62367050 TTTTCT-TTCTTTC-TCTTCTTTTTCT
1 TTTTCTCTTTTTTCTTCTTCTTTTT-T
62367075 TTTT
1 TTTT
62367079 TGGCCTGTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 10 0.37
25 11 0.41
26 6 0.22
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (26 bp):
TTTTCTCTTTTTTCTTCTTCTTTTTT
Found at i:62367370 original size:25 final size:23
Alignment explanation
Indices: 62367352--62367426 Score: 55
Period size: 25 Copynumber: 3.1 Consensus size: 23
62367342 TTTTTCTTCT
*
62367352 TCTTCCTTCTTCCTCTTTTCTTCTT
1 TCTTCCTTCTT-CTTTTTTCTTC-T
*
62367377 TCTTCTTTCTTCTTTCTTTCTTTCT
1 TCTTCCTTCTTCTTT-TTTC-TTCT
* *
62367402 TCTT--TTTTTCTTTCTTTCTTTT
1 TCTTCCTTCTTCTTT-TTTCTTCT
62367424 TCT
1 TCT
62367427 CTTCTCCTTC
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
22 6 0.14
23 13 0.30
24 3 0.07
25 19 0.43
26 3 0.07
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (23 bp):
TCTTCCTTCTTCTTTTTTCTTCT
Found at i:62367379 original size:4 final size:4
Alignment explanation
Indices: 62367368--62367422 Score: 73
Period size: 4 Copynumber: 14.8 Consensus size: 4
62367358 TTCTTCCTCT
*
62367368 TTTC -TTC TTTC -TTC TTTC -TTC TTTC TTTC TTTC -TTC TTTT TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
62367412 TTTC TTTC TTT
1 TTTC TTTC TTT
62367423 TTCTCTTCTC
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
3 12 0.27
4 33 0.73
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:62367397 original size:15 final size:15
Alignment explanation
Indices: 62367368--62367422 Score: 85
Period size: 15 Copynumber: 3.7 Consensus size: 15
62367358 TTCTTCCTCT
62367368 TTTCTTCTTTC-TTC
1 TTTCTTCTTTCTTTC
62367382 TTTCTTCTTTCTTTC
1 TTTCTTCTTTCTTTC
*
62367397 TTTCTTCTTTTTTTC
1 TTTCTTCTTTCTTTC
62367412 TTTCTTTCTTT
1 TTTC-TTCTTT
62367423 TTCTCTTCTC
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
14 11 0.29
15 21 0.55
16 6 0.16
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTCTTCTTTCTTTC
Found at i:62367404 original size:7 final size:7
Alignment explanation
Indices: 62367348--62367431 Score: 82
Period size: 7 Copynumber: 11.6 Consensus size: 7
62367338 TTCATTTTTC
62367348 TTCTTCT
1 TTCTTCT
*
62367355 TCCTTC-
1 TTCTTCT
*
62367361 TTCCTCTT
1 TTCTTC-T
62367369 TTCTTCT
1 TTCTTCT
62367376 TTCTTCT
1 TTCTTCT
62367383 TTCTTCT
1 TTCTTCT
62367390 TTCTTTCT
1 TTC-TTCT
62367398 TTCTTCTT
1 TTCTTC-T
*
62367406 TTTTTCT
1 TTCTTCT
62367413 TTCTTTCT
1 TTC-TTCT
62367421 TT-TTCT
1 TTCTTCT
62367427 CTTCT
1 -TTCT
62367432 CCTTCGTTCA
Statistics
Matches: 64, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
6 8 0.12
7 31 0.48
8 25 0.39
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (7 bp):
TTCTTCT
Found at i:62367423 original size:15 final size:14
Alignment explanation
Indices: 62367368--62367429 Score: 79
Period size: 15 Copynumber: 4.1 Consensus size: 14
62367358 TTCTTCCTCT
*
62367368 TTTCTTCTTTCTTC
1 TTTCTTCTTTTTTC
62367382 TTTCTTCTTTCTTTC
1 TTTCTTCTTT-TTTC
62367397 TTTCTTCTTTTTTTC
1 TTTCTTC-TTTTTTC
62367412 TTTCTTTCTTTTTCTC
1 TTTC-TTCTTTTT-TC
62367428 TT
1 TT
62367430 CTCCTTCGTT
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
14 10 0.23
15 23 0.53
16 10 0.23
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTCTTCTTTTTTC
Found at i:62367789 original size:30 final size:30
Alignment explanation
Indices: 62367753--62367809 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
62367743 AATTGCAGCA
* * *
62367753 AAAATTTTGGGGCCAAAGTGTAATTTTTAG
1 AAAATTTAGGGGCCAAAATATAATTTTTAG
*
62367783 AAAATTTAGGGGTCAAAATATAATTTT
1 AAAATTTAGGGGCCAAAATATAATTTT
62367810 GAAACAGAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.39, C:0.05, G:0.19, T:0.37
Consensus pattern (30 bp):
AAAATTTAGGGGCCAAAATATAATTTTTAG
Found at i:62375645 original size:15 final size:16
Alignment explanation
Indices: 62375619--62375648 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
62375609 ATAAAAGTAC
62375619 ATATTTTAAATCAAAA
1 ATATTTTAAATCAAAA
62375635 ATATTTT-AATCAAA
1 ATATTTTAAATCAAA
62375649 TCATCTGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (16 bp):
ATATTTTAAATCAAAA
Found at i:62378260 original size:31 final size:31
Alignment explanation
Indices: 62378224--62378292 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
62378214 ATTTAACGGA
* *
62378224 GAGTGACCAAAATAGAAACAATCTAAAGTGT
1 GAGTGACCAAAATAGAAACAATATAAAATGT
*
62378255 GAGTGACCAAAATAGAAATAATATAAAATGT
1 GAGTGACCAAAATAGAAACAATATAAAATGT
*
62378286 AAGTGAC
1 GAGTGAC
62378293 TAAATAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.51, C:0.10, G:0.19, T:0.20
Consensus pattern (31 bp):
GAGTGACCAAAATAGAAACAATATAAAATGT
Found at i:62385463 original size:12 final size:12
Alignment explanation
Indices: 62385448--62385477 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
62385438 ACAATAATAC
62385448 TATATATAAATG
1 TATATATAAATG
*
62385460 TATATATATATG
1 TATATATAAATG
62385472 TATATA
1 TATATA
62385478 ATAGAAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (12 bp):
TATATATAAATG
Found at i:62385591 original size:16 final size:17
Alignment explanation
Indices: 62385563--62385604 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
62385553 AAAGTAATAA
*
62385563 AAATA-ATACTATATAT
1 AAATATATACTATACAT
62385579 AAATATATA-TATACAT
1 AAATATATACTATACAT
*
62385595 AAAAATATAC
1 AAATATATAC
62385605 ACTAATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (17 bp):
AAATATATACTATACAT
Found at i:62385600 original size:18 final size:17
Alignment explanation
Indices: 62385559--62385613 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
62385549 AATTAAAGTA
62385559 ATAAAAATA-ATACTAT
1 ATAAAAATATATACTAT
*
62385575 ATATAAATATATATA-TAC
1 ATA-AAA-ATATATACTAT
*
62385593 ATAAAAATATACACTAAT
1 ATAAAAATATATACT-AT
62385611 ATA
1 ATA
62385614 TAATAGTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
16 9 0.29
17 7 0.23
18 12 0.39
19 3 0.10
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (17 bp):
ATAAAAATATATACTAT
Found at i:62385832 original size:3 final size:3
Alignment explanation
Indices: 62385819--62385901 Score: 54
Period size: 3 Copynumber: 28.3 Consensus size: 3
62385809 GAGGGCATAT
62385819 ATA AT- ATA ATA ATA AT- ATA A-A A-A ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA -AT-A -ATA ATA
* *
62385863 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
62385902 AACAAAGCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 13 0.20
3 43 0.66
4 7 0.11
5 2 0.03
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:62386402 original size:22 final size:23
Alignment explanation
Indices: 62386377--62386438 Score: 94
Period size: 22 Copynumber: 2.8 Consensus size: 23
62386367 GGGTGGTTTA
*
62386377 GGTGGCCAAGGGT-GGTGGAGTT
1 GGTGGCTAAGGGTGGGTGGAGTT
62386399 GGTGGCTAA-GGTGGGTGGAGTT
1 GGTGGCTAAGGGTGGGTGGAGTT
62386421 GGTGGCTAA-GGTGGGTGG
1 GGTGGCTAAGGGTGGGTGG
62386439 CCAACAAAGG
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
21 3 0.08
22 35 0.92
ACGTcount: A:0.13, C:0.06, G:0.56, T:0.24
Consensus pattern (23 bp):
GGTGGCTAAGGGTGGGTGGAGTT
Found at i:62386884 original size:42 final size:42
Alignment explanation
Indices: 62386769--62386914 Score: 170
Period size: 42 Copynumber: 3.5 Consensus size: 42
62386759 CATGGGGATG
* * *
62386769 AGATTTGTGTTTTTAGTCTGCTCCACTACTACTTAGGGAGATA
1 AGATCTGTGGTTTTA-TCTGCTCCACTACTGCTTAGGGAGATA
* *** * * *
62386812 AGA-CT-TGATGCGATCTGCTTCACTATTGCTTAGGGAAATA
1 AGATCTGTGGTTTTATCTGCTCCACTACTGCTTAGGGAGATA
62386852 AGATCTGTGGTTTTATCTGCTCCACTACTGCTTAGGGAGATA
1 AGATCTGTGGTTTTATCTGCTCCACTACTGCTTAGGGAGATA
*
62386894 AGATCTGTGGTTTTGTCTGCT
1 AGATCTGTGGTTTTATCTGCT
62386915 GTGATCTACT
Statistics
Matches: 84, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
40 26 0.31
41 6 0.07
42 49 0.58
43 3 0.04
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.38
Consensus pattern (42 bp):
AGATCTGTGGTTTTATCTGCTCCACTACTGCTTAGGGAGATA
Found at i:62386990 original size:44 final size:45
Alignment explanation
Indices: 62386961--62387318 Score: 121
Period size: 44 Copynumber: 7.8 Consensus size: 45
62386951 CCTTTATTTT
*
62386961 AATCCACTCCACTGTAATCTCAGGCAGATAGGAT-TACTATCTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCTACTATCTTC
* * * * *
62387005 AATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGA-AATTTTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCT-ACTA-TCTTC
** *** * * *
62387051 GGTCTGTTCCACTGTAATCTCAGGGAGATAAGATCTGA-AATTTTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCT-ACTA-TCTTC
** *** * **
62387097 GGTCTGTTCCACTGTAATCTCAGGGAGATAAGATCT-CTGGCTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCTACTATCTTC
* * *
62387141 AATCTGATGTGATCTACTCTACTGTAA-CTTCAGAG-AGATAAGATCCT-TTAT-TTT
1 AATC---------C-ACTCCACTGTAATC-TCAG-GCAGATAAGAT-CTACTATCTTC
* * *
62387195 AATCCGCTCCACTGTAA-CTTCAGAG-AGATAGGAT-TACTAGCTTC
1 AATCCACTCCACTGTAATC-TCAG-GCAGATAAGATCTACTATCTTC
* * **
62387239 AATCTACTCCGCTGTAATCTCAGAG-AGATAAGATCT-CTGGCTTC
1 AATCCACTCCACTGTAATCTCAG-GCAGATAAGATCTACTATCTTC
** * *
62387283 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCT
62387319 GAAATTCTTC
Statistics
Matches: 253, Mismatches: 39, Indels: 44
0.75 0.12 0.13
Matches are distributed among these distances:
42 1 0.00
43 3 0.01
44 129 0.51
45 5 0.02
46 82 0.32
53 1 0.00
54 28 0.11
55 4 0.02
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (45 bp):
AATCCACTCCACTGTAATCTCAGGCAGATAAGATCTACTATCTTC
Found at i:62387072 original size:46 final size:46
Alignment explanation
Indices: 62387016--62387132 Score: 234
Period size: 46 Copynumber: 2.5 Consensus size: 46
62387006 ATCTACTCCG
62387016 CTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCA
62387062 CTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCA
62387108 CTGTAATCTCAGGGAGATAAGATCT
1 CTGTAATCTCAGGGAGATAAGATCT
62387133 CTGGCTTCAA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (46 bp):
CTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCA
Found at i:62387311 original size:88 final size:88
Alignment explanation
Indices: 62387152--62387312 Score: 209
Period size: 88 Copynumber: 1.8 Consensus size: 88
62387142 ATCTGATGTG
* * * * *
62387152 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTCA
62387217 GAGAGATAGGATTACTAGCTTCA
66 GAGAGATAGGATTACTAGCTTCA
* * *
62387240 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGAT-CTCTGGCTTCAATCTGCTCCACTGTAACCT
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCCT-TGACTTCAATCCGCTCCACTGTAACCT
*
62387303 CAGGGAGATA
64 CAGAGAGATA
62387313 AGATCTGAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
87 3 0.05
88 59 0.95
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (88 bp):
ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTCA
GAGAGATAGGATTACTAGCTTCA
Found at i:62387442 original size:44 final size:44
Alignment explanation
Indices: 62387152--62387448 Score: 150
Period size: 44 Copynumber: 6.8 Consensus size: 44
62387142 ATCTGATGTG
* *
62387152 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TTATTTTA
1 ATCTACTCCACTGTAAC-TCAGAGAGATAAGATCCTATTATTTCA
** * * *
62387196 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT--TACTAGCTTCA
1 ATCTACTCCACTGTAAC-TCAGAGAGATAAGATCCTATTA-TTTCA
* * ***
62387240 ATCTACTCCGCTGTAATCTCAGAGAGATAAGAT-CTCTGGCTTCA
1 ATCTACTCCACTGTAA-CTCAGAGAGATAAGATCCTATTATTTCA
* * * *
62387284 ATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATT-CTTCG
1 ATCTACTCCACTGTAA-CTCAGAGAGATAAGATCCT---ATTATTTCA
* * * * *
62387330 GTCTACTCCCCTGTAACCTCAGGGTGATAAGA-CCTGA-TA---CG
1 ATCTACTCCACTGTAA-CTCAGAGAGATAAGATCCT-ATTATTTCA
** *
62387371 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCT-TTATTTTA
1 ATCTACTCCACTGTAAC-TCAGAGAGATAAGATCCTATTATTTCA
** * *
62387415 ATCCGCTCCACTGTAATCTCAGGGAGATAGGATC
1 ATCTACTCCACTGTAA-CTCAGAGAGATAAGATC
62387449 TGAAATTCTT
Statistics
Matches: 197, Mismatches: 40, Indels: 32
0.73 0.15 0.12
Matches are distributed among these distances:
40 1 0.01
41 29 0.15
42 4 0.02
43 3 0.02
44 122 0.62
45 3 0.02
46 34 0.17
47 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
ATCTACTCCACTGTAACTCAGAGAGATAAGATCCTATTATTTCA
Found at i:62387616 original size:132 final size:132
Alignment explanation
Indices: 62387465--62387998 Score: 897
Period size: 132 Copynumber: 4.0 Consensus size: 132
62387455 TCTTTGGTCC
62387465 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAA
1 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAA
* * * * *
62387530 GACAAGATCTGCGTCGTCGATCCACTTCCAATCATTATAGGAAGATAGGACCTGTTATCTTTGAT
66 GACAAGATCTGCATCGTCGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGAT
62387595 CT
131 CT
62387597 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAA
1 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAA
* * * *
62387662 GACAAGATCTGTATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGAACTGCTATCTTCGAT
66 GACAAGATCTGCATCGTCGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGAT
62387727 CT
131 CT
*
62387729 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAA
1 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAA
* * *
62387794 GACAAGATCTGTATCTTGGATCCACTTCCTATCAATATAGGAAAGATAGGACCTGCTATCTTCGA
66 GACAAGATCTGCATCGTCGATCCACTTCCTATCAATATAGG-AAGATAGGACCTGCTATCTTCGA
62387859 TCT
130 TCT
*
62387862 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCATCAATATGGGAA
1 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAA
* * * *
62387927 GACAAGATCTGCGTCGTCGATCCACTTCCTACCAATATAGGAAGATAGGATCAGCTATCTTCGAT
66 GACAAGATCTGCATCGTCGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGAT
62387992 CT
131 CT
62387994 ACTTC
1 ACTTC
62387999 TTGCCCCGGG
Statistics
Matches: 381, Mismatches: 20, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
132 257 0.67
133 124 0.33
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (132 bp):
ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAA
GACAAGATCTGCATCGTCGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGAT
CT
Found at i:62387618 original size:44 final size:44
Alignment explanation
Indices: 62387465--62388680 Score: 436
Period size: 44 Copynumber: 27.6 Consensus size: 44
62387455 TCTTTGGTCC
* * * *
62387465 ACTTCACGCCAATACATGAAGACAAGATCTGCTT-TCTGCGATCT
1 ACTTCACACCAATATAGGAAGACAAGATCTG-TTATCTTCGATCT
* * ** * *
62387509 ACTTCGCCACCAATATGGGAAGACAAGATCTG-CGTCGTCGATCC
1 ACTTC-ACACCAATATAGGAAGACAAGATCTGTTATCTTCGATCT
* * * * * *
62387553 ACTTC-CAATCATTATAGGAAGATAGGACCTGTTATCTTTGATCT
1 ACTTCAC-ACCAATATAGGAAGACAAGATCTGTTATCTTCGATCT
* * * *
62387597 ACTTCACGCCAATACATGAAGACAAGATCTGCTT-TCTGCGATCT
1 ACTTCACACCAATATAGGAAGACAAGATCTG-TTATCTTCGATCT
* * * *
62387641 ACTTCGCCACCAATATGGGAAGACAAGATCTG-TATCTTGGATCC
1 ACTTC-ACACCAATATAGGAAGACAAGATCTGTTATCTTCGATCT
* * * * *
62387685 ACTTC-CTATCAATATAGGAAGATAGGAACTGCTATCTTCGATCT
1 ACTTCAC-ACCAATATAGGAAGACAAGATCTGTTATCTTCGATCT
* * *
62387729 ACTTCACGCCAATACATGAAGACAAGATCTGCTT-TCTTCGATCT
1 ACTTCACACCAATATAGGAAGACAAGATCTG-TTATCTTCGATCT
* * * *
62387773 ACTTCGCCACCAATATGGGAAGACAAGATCTG-TATCTTGGATCC
1 ACTTC-ACACCAATATAGGAAGACAAGATCTGTTATCTTCGATCT
* * * * *
62387817 ACTTC-CTATCAATATAGGAAAGATAGGACCTGCTATCTTCGATCT
1 ACTTCAC-ACCAATATAGG-AAGACAAGATCTGTTATCTTCGATCT
* * * *
62387862 ACTTCACGCCAATACATGAAGACAAGATCTGCTT-TCTGCGATCT
1 ACTTCACACCAATATAGGAAGACAAGATCTG-TTATCTTCGATCT
* * * ** * *
62387906 ACTTCGCCATCAATATGGGAAGACAAGATCTG-CGTCGTCGATCC
1 ACTTC-ACACCAATATAGGAAGACAAGATCTGTTATCTTCGATCT
* * * *
62387950 ACTTC-CTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCT
1 ACTTCAC-ACCAATATAGGAAGACAAGATCTGTTATCTTCGATCT
*** ** * * * * * * * *
62387994 ACTTCTTGCC----CCGGGAGA-TAGAACTATCAGCTTCAATGT
1 ACTTCACACCAATATAGGAAGACAAGATCTGTTATCTTCGATCT
* *** * **
62388033 ACTCCACTGTAATCAT-GGAGGTA-AA-ATCTGCCATCTTCGATCT
1 ACTTCACACCAAT-ATAGGAAG-ACAAGATCTGTTATCTTCGATCT
* ** * * * *** *
62388076 GCTTTGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCT
1 ACTTCAC-ACC-AATATAGGAAGACAAGATCTGTTATCTTCGATCT
* * * * * *
62388122 A-TTCCACTGCCAAATACAGGGAGA-TAGA---GTTATCGGCTTCAATGT
1 ACTT-CAC-ACC-AATATAGGAAGACAAGATCTGTTAT---CTTCGATCT
** * * ** * ** *
62388167 AC-TC-CA-CTGTGGTCAGGGAGGTAAAATCTGCCATCTTTGATCT
1 ACTTCACACCAAT-AT-AGGAAGACAAGATCTGTTATCTTCGATCT
* * * * * ** *
62388210 GCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCT
1 ACTTCAC-ACC-AATATAGGAAGACAAGATCTGTTATCTTCGATCT
* * * * *
62388256 ACTTCACCACCAGTATGGGAAGACAAGATCTG-CATCTTGGATCC
1 ACTTCA-CACCAATATAGGAAGACAAGATCTGTTATCTTCGATCT
* * * * *
62388300 ACTTC-CTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCT
1 ACTTCAC-ACCAATATAGGAAGACAAGATCTGTTATCTTCGATCT
* * * *
62388344 ACTTCACGCCAATACATGAAGACAAGATCTGCTT-TCTGCGATCT
1 ACTTCACACCAATATAGGAAGACAAGATCTG-TTATCTTCGATCT
* * * * * *
62388388 ACTTCGCCACCAATATGGGAAGACAAGATCTG-CATATTGGATCC
1 ACTTC-ACACCAATATAGGAAGACAAGATCTGTTATCTTCGATCT
* * * * *
62388432 ACTTC-CTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCT
1 ACTTCAC-ACCAATATAGGAAGACAAGATCTGTTATCTTCGATCT
* * * * * *
62388476 TCTTCACGCCAATACATGAAGACAAGATCTACTT-TCTGCGATCT
1 ACTTCACACCAATATAGGAAGACAAGATCT-GTTATCTTCGATCT
* * * *
62388520 ACTTCGCCACCAATATGGGAAGACAAGATCTG-CATCTTCGATCC
1 ACTTC-ACACCAATATAGGAAGACAAGATCTGTTATCTTCGATCT
* * * * *
62388564 ACTTC-CTACCAATATAGAAAGATAGGATCTGCTACCTTCGATCT
1 ACTTCAC-ACCAATATAGGAAGACAAGATCTGTTATCTTCGATCT
* * * *
62388608 ACTTCACGCCAATACATGAAGACAAGATCTGCTT-TCTGCGATCT
1 ACTTCACACCAATATAGGAAGACAAGATCTG-TTATCTTCGATCT
* *
62388652 ACTTCGCCACCAATATGGGAAGACAAGAT
1 ACTTC-ACACCAATATAGGAAGACAAGAT
62388681 TTGCATCCTG
Statistics
Matches: 839, Mismatches: 264, Indels: 137
0.68 0.21 0.11
Matches are distributed among these distances:
39 15 0.02
40 6 0.01
41 1 0.00
42 15 0.02
43 152 0.18
44 365 0.44
45 218 0.26
46 64 0.08
47 2 0.00
48 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (44 bp):
ACTTCACACCAATATAGGAAGACAAGATCTGTTATCTTCGATCT
Found at i:62387922 original size:265 final size:264
Alignment explanation
Indices: 62387465--62387998 Score: 906
Period size: 265 Copynumber: 2.0 Consensus size: 264
62387455 TCTTTGGTCC
62387465 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAA
1 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAA
* * * *
62387530 GACAAGATCTGCGTCGTCGATCCACTTCCAATCATTATAGGAAGATAGGACCTGTTATCTTTGAT
66 GACAAGATCTGCATCGTCGATCCACTTCCAATCAATATAGGAAGATAGGACCTGCTATCTTCGAT
62387595 CTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGG
131 CTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGG
* * * * *
62387660 AAGACAAGATCTGTATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGAACTGCTATCTTCG
196 AAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGATAGGAACAGCTATCTTCG
62387725 ATCT
261 ATCT
*
62387729 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAA
1 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAA
* * * *
62387794 GACAAGATCTGTATCTTGGATCCACTTCCTATCAATATAGGAAAGATAGGACCTGCTATCTTCGA
66 GACAAGATCTGCATCGTCGATCCACTTCCAATCAATATAGG-AAGATAGGACCTGCTATCTTCGA
*
62387859 TCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCATCAATATGG
130 TCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGG
* *
62387924 GAAGACAAGATCTGCGTCGTCGATCCACTTCCTACCAATATAGGAAGATAGGATCAGCTATCTTC
195 GAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGATAGGAACAGCTATCTTC
62387989 GATCT
260 GATCT
62387994 ACTTC
1 ACTTC
62387999 TTGCCCCGGG
Statistics
Matches: 252, Mismatches: 17, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
264 99 0.39
265 153 0.61
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (264 bp):
ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAA
GACAAGATCTGCATCGTCGATCCACTTCCAATCAATATAGGAAGATAGGACCTGCTATCTTCGAT
CTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGG
AAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGATAGGAACAGCTATCTTCG
ATCT
Found at i:62388199 original size:134 final size:134
Alignment explanation
Indices: 62388006--62388256 Score: 421
Period size: 134 Copynumber: 1.9 Consensus size: 134
62387996 TTCTTGCCCC
*
62388006 GGGAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCATGGAGGTAAAATCTGCCATCTTC
1 GGGAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTC
*
62388071 GATCTGCTTTGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCCACTGCCAAA
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCCACTGCCAAA
62388136 TACA
131 TACA
** * ** *
62388140 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
1 GGGAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTC
*
62388205 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTA
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTA
62388257 CTTCACCACC
Statistics
Matches: 108, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
134 108 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (134 bp):
GGGAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTC
GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCCACTGCCAAA
TACA
Found at i:62388459 original size:132 final size:132
Alignment explanation
Indices: 62388194--62388776 Score: 878
Period size: 132 Copynumber: 4.4 Consensus size: 132
62388184 GAGGTAAAAT
* * * * * * ** * *
62388194 CTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTACT
1 CTGCTATCTTCGATCTACTTCAC-GCC-AATACATGAAGACAAGATCTGCTTTCTGCGATCTACT
* *
62388259 TCACCACCAGTATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATA
64 TCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATA
62388324 GGAC
129 GGAC
62388328 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
*
62388393 GCCACCAATATGGGAAGACAAGATCTGCATATTGGATCCACTTCCTATCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGG
62388458 AC
131 AC
* *
62388460 CTGCTATCTTCGATCTTCTTCACGCCAATACATGAAGACAAGATCTACTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
* * *
62388525 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGAAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGG
*
62388590 AT
131 AC
*
62388592 CTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
* * *
62388657 GCCACCAATATGGGAAGACAAGATTTGCATCCTGGATCCACTTCCTATCAATATAGGAAGGTAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGG
62388722 AC
131 AC
* * * * *
62388724 CTGCTATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTACTTT
1 CTGCTATCTTCGATCTACTTCAC-GCC-AATACATGAAGACAAGATCTGCTTT
62388777 AATGACTTCA
Statistics
Matches: 411, Mismatches: 36, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
132 364 0.89
133 6 0.01
134 41 0.10
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (132 bp):
CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
GCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGG
AC
Found at i:62401096 original size:16 final size:17
Alignment explanation
Indices: 62401068--62401109 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
62401058 AAAGTAATAA
*
62401068 AAATA-ATACTATATAT
1 AAATATATACTATACAT
62401084 AAATATATA-TATACAT
1 AAATATATACTATACAT
*
62401100 AAAAATATAC
1 AAATATATAC
62401110 ACTAATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (17 bp):
AAATATATACTATACAT
Found at i:62401105 original size:18 final size:17
Alignment explanation
Indices: 62401064--62401118 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
62401054 AATTAAAGTA
62401064 ATAAAAATA-ATACTAT
1 ATAAAAATATATACTAT
*
62401080 ATATAAATATATATA-TAC
1 ATA-AAA-ATATATACTAT
*
62401098 ATAAAAATATACACTAAT
1 ATAAAAATATATACT-AT
62401116 ATA
1 ATA
62401119 TAATAGTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
16 9 0.29
17 7 0.23
18 12 0.39
19 3 0.10
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (17 bp):
ATAAAAATATATACTAT
Found at i:62401341 original size:15 final size:15
Alignment explanation
Indices: 62401323--62401398 Score: 54
Period size: 15 Copynumber: 5.1 Consensus size: 15
62401313 TGGAGAGGGC
62401323 ATATATAATATAATA
1 ATATATAATATAATA
62401338 ATATA-AA-A-AATA
1 ATATATAATATAATA
*
62401350 ATATATACATGAGAAATA
1 ATATATA-AT-A-TAATA
62401368 ATA-ATAATATAAATA
1 ATATATAATAT-AATA
*
62401383 ATAGTA-AAAATAATA
1 ATA-TATAATATAATA
62401398 A
1 A
62401399 AATAATAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 18
0.71 0.03 0.26
Matches are distributed among these distances:
12 9 0.18
13 2 0.04
14 3 0.06
15 18 0.36
16 7 0.14
17 4 0.08
18 7 0.14
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.30
Consensus pattern (15 bp):
ATATATAATATAATA
Found at i:62401904 original size:22 final size:23
Alignment explanation
Indices: 62401879--62401940 Score: 94
Period size: 22 Copynumber: 2.8 Consensus size: 23
62401869 GGGTGGTTTA
*
62401879 GGTGGCCAAGGGT-GGTGGAGTT
1 GGTGGCTAAGGGTGGGTGGAGTT
62401901 GGTGGCTAA-GGTGGGTGGAGTT
1 GGTGGCTAAGGGTGGGTGGAGTT
62401923 GGTGGCTAA-GGTGGGTGG
1 GGTGGCTAAGGGTGGGTGG
62401941 CCAACAAAGG
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
21 3 0.08
22 35 0.92
ACGTcount: A:0.13, C:0.06, G:0.56, T:0.24
Consensus pattern (23 bp):
GGTGGCTAAGGGTGGGTGGAGTT
Found at i:62402804 original size:17 final size:17
Alignment explanation
Indices: 62402782--62402834 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
62402772 ATAGAAAGTC
*
62402782 AAAGATATGAGTATAAA
1 AAAGATATGGGTATAAA
* *
62402799 AAAGATATGGGTATTAG
1 AAAGATATGGGTATAAA
62402816 AAAGATATGGGTATCAAA
1 AAAGATATGGGTAT-AAA
62402834 A
1 A
62402835 TCTGAGATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 28 0.93
18 2 0.07
ACGTcount: A:0.51, C:0.02, G:0.23, T:0.25
Consensus pattern (17 bp):
AAAGATATGGGTATAAA
Found at i:62410063 original size:22 final size:25
Alignment explanation
Indices: 62410005--62410055 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
62409995 TTGATTTACC
62410005 TATTTTAATTATGACAAACCAAAAA
1 TATTTTAATTATGACAAACCAAAAA
*
62410030 TATTTTAATTATGACAACCCAAAAA
1 TATTTTAATTATGACAAACCAAAAA
62410055 T
1 T
62410056 TTAATTATAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.49, C:0.14, G:0.04, T:0.33
Consensus pattern (25 bp):
TATTTTAATTATGACAAACCAAAAA
Found at i:62424729 original size:45 final size:47
Alignment explanation
Indices: 62424680--62424786 Score: 128
Period size: 51 Copynumber: 2.2 Consensus size: 47
62424670 CTCCCTGAAG
* * *
62424680 TTGCAGTGGAGCAG-A-CTGAAGGTAGCGAATCTTATTTCCCTGGCT
1 TTGCAGTGGAACAGAAGCTAAAGGTAGCGAATCTTATTTCCCTGGCA
*
62424725 TTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCA
1 TTGCAGTGGAACAG----AAGCTAAAGGTAGCGAATCTTATTTCCCTGGCA
62424776 TTGCAGTGGAA
1 TTGCAGTGGAA
62424787 TAGATTAAAG
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
45 13 0.25
50 1 0.02
51 38 0.73
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (47 bp):
TTGCAGTGGAACAGAAGCTAAAGGTAGCGAATCTTATTTCCCTGGCA
Found at i:62424774 original size:51 final size:51
Alignment explanation
Indices: 62424698--62424798 Score: 175
Period size: 51 Copynumber: 2.0 Consensus size: 51
62424688 GAGCAGACTG
*
62424698 AAGGTAGCGAATCTTATTTCCCTGGCTTTGCAGTGGAACAGATTAAAGCTA
1 AAGGTAGCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTA
* *
62424749 AAGGTAGCGAATCTTGTTTCCCTGGCATTGCAGTGGAATAGATTAAAGCT
1 AAGGTAGCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCT
62424799 GAAGTATAGC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (51 bp):
AAGGTAGCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTA
Found at i:62424869 original size:51 final size:51
Alignment explanation
Indices: 62424810--62425053 Score: 222
Period size: 51 Copynumber: 4.8 Consensus size: 51
62424800 AAGTATAGCG
*
62424810 GATTAAAGCTGAAGGCAGTGAATCCTATCTCCTTGGCTTTGCAATGGAACA
1 GATTAAAGCTGAAGGCAGTGAATCCTATCTCCTTGGCATTGCAATGGAACA
* * ** * * * * * *
62424861 GATTAAAGCTAAAGGTAGCAAATCTTGTTTCCCTGGCATTGCAGTGGAATA
1 GATTAAAGCTGAAGGCAGTGAATCCTATCTCCTTGGCATTGCAATGGAACA
* * * *
62424912 GATTAAAGCTGAAGGCGGTGAATCCTATCTCCTTGGCATTACAGTGGAATA
1 GATTAAAGCTGAAGGCAGTGAATCCTATCTCCTTGGCATTGCAATGGAACA
* * * * * *
62424963 GATTAAAGCTAAAGGTAGTGAATCTTGTTTCCCTGGCATTGC-A-GCGAAGCA
1 GATTAAAGCTGAAGGCAGTGAATCCTATCTCCTTGGCATTGCAATG-GAA-CA
* ** **
62425014 TATTAAAGCTGAAGGCAACGAATTGTATCTCCTTGGCATT
1 GATTAAAGCTGAAGGCAGTGAATCCTATCTCCTTGGCATT
62425054 AAAGACTAAA
Statistics
Matches: 150, Mismatches: 41, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
49 1 0.01
50 3 0.02
51 146 0.97
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.29
Consensus pattern (51 bp):
GATTAAAGCTGAAGGCAGTGAATCCTATCTCCTTGGCATTGCAATGGAACA
Found at i:62424893 original size:123 final size:123
Alignment explanation
Indices: 62424695--62424925 Score: 399
Period size: 123 Copynumber: 1.9 Consensus size: 123
62424685 GTGGAGCAGA
* * * * *
62424695 CTGAAGGTAGCGAATCTTATTTCCCTGGCTTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
1 CTGAAGGCAGCGAATCCTATCTCCCTGGCTTTGCAATGGAACAGATTAAAGCTAAAGGTAGCAAA
62424760 TCTTGTTTCCCTGGCATTGCAGTGGAATAGATTAAAGCTGAAGTATAGCGGATTAAAG
66 TCTTGTTTCCCTGGCATTGCAGTGGAATAGATTAAAGCTGAAGTATAGCGGATTAAAG
* *
62424818 CTGAAGGCAGTGAATCCTATCTCCTTGGCTTTGCAATGGAACAGATTAAAGCTAAAGGTAGCAAA
1 CTGAAGGCAGCGAATCCTATCTCCCTGGCTTTGCAATGGAACAGATTAAAGCTAAAGGTAGCAAA
62424883 TCTTGTTTCCCTGGCATTGCAGTGGAATAGATTAAAGCTGAAG
66 TCTTGTTTCCCTGGCATTGCAGTGGAATAGATTAAAGCTGAAG
62424926 GCGGTGAATC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
123 101 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (123 bp):
CTGAAGGCAGCGAATCCTATCTCCCTGGCTTTGCAATGGAACAGATTAAAGCTAAAGGTAGCAAA
TCTTGTTTCCCTGGCATTGCAGTGGAATAGATTAAAGCTGAAGTATAGCGGATTAAAG
Found at i:62424987 original size:102 final size:102
Alignment explanation
Indices: 62424810--62425054 Score: 348
Period size: 102 Copynumber: 2.4 Consensus size: 102
62424800 AAGTATAGCG
* *
62424810 GATTAAAGCTGAAGGCAGTGAATCCTATCTCCTTGGCTTTGCAATGGAACAGATTAAAGCTAAAG
1 GATTAAAGCTGAAGGCAGTGAATCCTATCTCCTTGGCATTACAATGGAACAGATTAAAGCTAAAG
* *
62424875 GTAGCAAATCTTGTTTCCCTGGCATTGCAGTGGAA-TA
66 GTAGCAAATCTTGTTTCCCTGGCATTGCAG-CGAAGCA
* * *
62424912 GATTAAAGCTGAAGGCGGTGAATCCTATCTCCTTGGCATTACAGTGGAATAGATTAAAGCTAAAG
1 GATTAAAGCTGAAGGCAGTGAATCCTATCTCCTTGGCATTACAATGGAACAGATTAAAGCTAAAG
**
62424977 GTAGTGAATCTTGTTTCCCTGGCATTGCAGCGAAGCA
66 GTAGCAAATCTTGTTTCCCTGGCATTGCAGCGAAGCA
* ** **
62425014 TATTAAAGCTGAAGGCAACGAATTGTATCTCCTTGGCATTA
1 GATTAAAGCTGAAGGCAGTGAATCCTATCTCCTTGGCATTA
62425055 AAGACTAAAG
Statistics
Matches: 127, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
101 3 0.02
102 124 0.98
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.29
Consensus pattern (102 bp):
GATTAAAGCTGAAGGCAGTGAATCCTATCTCCTTGGCATTACAATGGAACAGATTAAAGCTAAAG
GTAGCAAATCTTGTTTCCCTGGCATTGCAGCGAAGCA
Found at i:62427027 original size:18 final size:18
Alignment explanation
Indices: 62426989--62427027 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
62426979 TTTAATGGTG
*
62426989 TTATCATTATTTTTACCA
1 TTATCATTATTTTTAACA
* *
62427007 TTATTATTATTTTTAATA
1 TTATCATTATTTTTAACA
62427025 TTA
1 TTA
62427028 CTGTTACCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (18 bp):
TTATCATTATTTTTAACA
Found at i:62427181 original size:2 final size:2
Alignment explanation
Indices: 62427174--62427244 Score: 56
Period size: 2 Copynumber: 36.5 Consensus size: 2
62427164 TGTACACGTG
* * * * *
62427174 TA TA TA TA TA GA TA TA TA TA TT TA TA T- TT TA TA TA CA TA TC
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
62427215 TA CA TA TC TA CA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
62427245 TTTCATGAAT
Statistics
Matches: 52, Mismatches: 15, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
1 2 0.04
2 50 0.96
ACGTcount: A:0.42, C:0.07, G:0.01, T:0.49
Consensus pattern (2 bp):
TA
Found at i:62427230 original size:41 final size:38
Alignment explanation
Indices: 62427197--62427291 Score: 75
Period size: 41 Copynumber: 2.3 Consensus size: 38
62427187 ATATATATTT
62427197 ATATTTTATATACATATCTACATATCTACATATATATATATATT
1 ATATTTTATATACATA--TACATA-CT-CA-ATATATATAT-TT
* *
62427241 ATATTTTCATGAATACATATACATACT-TATATATATTTTTT
1 ATATTTT-AT--ATACATATACATACTCAATATATA-TATTT
62427282 ATATTTTATA
1 ATATTTTATA
62427292 ATTTTTGTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
38 1 0.02
40 2 0.04
41 16 0.36
42 2 0.04
44 9 0.20
45 8 0.18
47 7 0.16
ACGTcount: A:0.39, C:0.09, G:0.01, T:0.51
Consensus pattern (38 bp):
ATATTTTATATACATATACATACTCAATATATATATTT
Found at i:62431209 original size:17 final size:17
Alignment explanation
Indices: 62431187--62431222 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
62431177 TACATAATAT
62431187 AATAAACATATT-TAAAA
1 AATAAACAT-TTATAAAA
62431204 AATAAACATTTATAAAA
1 AATAAACATTTATAAAA
62431221 AA
1 AA
62431223 AATATTTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 2 0.11
17 16 0.89
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.28
Consensus pattern (17 bp):
AATAAACATTTATAAAA
Found at i:62432238 original size:26 final size:26
Alignment explanation
Indices: 62432183--62432239 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
62432173 AATAACTTGT
* * * *
62432183 TAGAAGGGTTGATTAATTGGAAAGCA
1 TAGAAGGGTTAATCAATTAGAAAACA
62432209 TAGAATGGGTTAATCAATTAGAAAAC-
1 TAGAA-GGGTTAATCAATTAGAAAACA
62432235 TAGAA
1 TAGAA
62432240 ATTATTAAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 10 0.38
27 16 0.62
ACGTcount: A:0.44, C:0.05, G:0.25, T:0.26
Consensus pattern (26 bp):
TAGAAGGGTTAATCAATTAGAAAACA
Found at i:62436394 original size:31 final size:31
Alignment explanation
Indices: 62436337--62436395 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
62436327 ATCACTATCG
**
62436337 TTTTAGATCATTTCTATTTTGGTCACTCACA
1 TTTTAGATCATTTCTATTTTACTCACTCACA
*
62436368 TTTTAGAGT-ATTTTTATTTTACTCACTC
1 TTTTAGA-TCATTTCTATTTTACTCACTC
62436396 TTCATTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 23 0.96
32 1 0.04
ACGTcount: A:0.22, C:0.17, G:0.08, T:0.53
Consensus pattern (31 bp):
TTTTAGATCATTTCTATTTTACTCACTCACA
Found at i:62440545 original size:9 final size:9
Alignment explanation
Indices: 62440520--62440556 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
62440510 TGAGTTTTCG
62440520 AATTCGAAT
1 AATTCGAAT
**
62440529 AACCCGAAT
1 AATTCGAAT
62440538 AATTCGAAT
1 AATTCGAAT
62440547 AATTCGAAT
1 AATTCGAAT
62440556 A
1 A
62440557 TTAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.46, C:0.16, G:0.11, T:0.27
Consensus pattern (9 bp):
AATTCGAAT
Found at i:62444040 original size:3 final size:3
Alignment explanation
Indices: 62444032--62444057 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
62444022 CTTACTTATA
62444032 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
62444058 ATTTTGCTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:62450238 original size:33 final size:33
Alignment explanation
Indices: 62450201--62450272 Score: 126
Period size: 33 Copynumber: 2.2 Consensus size: 33
62450191 AAATAAAATT
*
62450201 TAAAATTCTTTTATTATCAAATAAATTTCTTAA
1 TAAAATTCTTTTATTATCAAATAAAATTCTTAA
62450234 TAAAATTCTTTTATTATCAAATAAAATTCTTAA
1 TAAAATTCTTTTATTATCAAATAAAATTCTTAA
62450267 TGAAAA
1 T-AAAA
62450273 AATAAAACAT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
33 33 0.89
34 4 0.11
ACGTcount: A:0.46, C:0.08, G:0.01, T:0.44
Consensus pattern (33 bp):
TAAAATTCTTTTATTATCAAATAAAATTCTTAA
Found at i:62451904 original size:17 final size:17
Alignment explanation
Indices: 62451882--62451934 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
62451872 ATAGAAAGTC
*
62451882 AAAGATATGAGTATAAA
1 AAAGATATGGGTATAAA
* *
62451899 AAAGATATGGGTATTAG
1 AAAGATATGGGTATAAA
62451916 AAAGATATGGGTATCAAA
1 AAAGATATGGGTAT-AAA
62451934 A
1 A
62451935 TCTGAGATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 28 0.93
18 2 0.07
ACGTcount: A:0.51, C:0.02, G:0.23, T:0.25
Consensus pattern (17 bp):
AAAGATATGGGTATAAA
Found at i:62457349 original size:8 final size:8
Alignment explanation
Indices: 62457336--62457360 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
62457326 TAATATGTCA
62457336 CTCAAAAT
1 CTCAAAAT
62457344 CTCAAAAT
1 CTCAAAAT
62457352 CTCAAAAT
1 CTCAAAAT
62457360 C
1 C
62457361 ATCCAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (8 bp):
CTCAAAAT
Found at i:62460493 original size:134 final size:134
Alignment explanation
Indices: 62460253--62461049 Score: 1436
Period size: 134 Copynumber: 5.9 Consensus size: 134
62460243 CAAACTATTT
*
62460253 TGTATTTGGCAGCGAAGCAGGTCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACAT
1 TGTATTTGGCAGCGAAGCAAGTCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACAT
62460318 TGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCC
66 TGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCC
62460383 TTCC
131 TTCC
*
62460387 TGTATTTGGCAGCGAAGCAAGTCGAAGATGGCGGATTTTACCTCCCTGACTACAGTGGAGTACAT
1 TGTATTTGGCAGCGAAGCAAGTCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACAT
62460452 TGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCC
66 TGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCC
62460517 TTCC
131 TTCC
* *
62460521 TGTATTTGGCAGCGAAGCAGGTCGAAGATGGCGGATTTTACCTCCCTGACTACAGTGGAGTACAT
1 TGTATTTGGCAGCGAAGCAAGTCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACAT
62460586 TGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCC
66 TGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCC
62460651 TTCC
131 TTCC
*
62460655 TGTATTTGGCAGCGAAGCAGGTCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACAT
1 TGTATTTGGCAGCGAAGCAAGTCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACAT
*
62460720 TGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCC
66 TGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCC
62460785 TTCC
131 TTCC
* *
62460789 TGTATTTGGCAGCGAAGC-AGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACA
1 TGTATTTGGCAGCGAAGCAAG-TCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACA
* *
62460853 TTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTTGC
65 TTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
62460918 CTTCC
130 CTTCC
* * *
62460923 TGTATTTGGCAGTGAAGC-AGATCAAAGATGTCAGATTTTACCTCCCTGACTACAGTGGAGTACA
1 TGTATTTGGCAGCGAAGCAAG-TCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACA
*
62460987 TTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTT
65 TTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTT
62461050 ATCTCCCTAA
Statistics
Matches: 649, Mismatches: 13, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
133 1 0.00
134 648 1.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (134 bp):
TGTATTTGGCAGCGAAGCAAGTCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACAT
TGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCC
TTCC
Found at i:62460892 original size:45 final size:46
Alignment explanation
Indices: 62460305--62461038 Score: 192
Period size: 46 Copynumber: 16.4 Consensus size: 46
62460295 TCCCTGACTA
* * *
62460305 CAGTGGAGTACATTGAAGCCGATA-ACTCTATCTCCCTGTATTTGG
1 CAGTGGAGTAGATTGAAGACGATAGATTCTATCTCCCTGTATTTGG
* * * *
62460350 CAGTGGAATAGATTGAAGATTG-CAGA-TCT-TGCCTTCCTGTATTTGG
1 CAGTGGAGTAGATTGAAGA-CGATAGATTCTAT--CTCCCTGTATTTGG
* * * * * *** * * * *
62460396 CAGCGAAGCA-AGTCGAAGATGGCGGATTTTACCTCCCTG-A-CT-A
1 CAGTGGAGTAGA-TTGAAGACGATAGATTCTATCTCCCTGTATTTGG
* * *
62460439 CAGTGGAGTACATTGAAGCCGATA-ACTCTATCTCCCTGTATTTGG
1 CAGTGGAGTAGATTGAAGACGATAGATTCTATCTCCCTGTATTTGG
* * * *
62460484 CAGTGGAATAGATTGAAGATTG-CAGA-TCT-TGCCTTCCTGTATTTGG
1 CAGTGGAGTAGATTGAAGA-CGATAGATTCTAT--CTCCCTGTATTTGG
* * * * * * *** * * * *
62460530 CAGCGAAGCAGGTCGAAGATGGCGGATTTTACCTCCCTG-A-CT-A
1 CAGTGGAGTAGATTGAAGACGATAGATTCTATCTCCCTGTATTTGG
* * *
62460573 CAGTGGAGTACATTGAAGCCGATA-ACTCTATCTCCCTGTATTTGG
1 CAGTGGAGTAGATTGAAGACGATAGATTCTATCTCCCTGTATTTGG
* * * *
62460618 CAGTGGAATAGATTGAAGATTG-CAGA-TCT-TGCCTTCCTGTATTTGG
1 CAGTGGAGTAGATTGAAGA-CGATAGATTCTAT--CTCCCTGTATTTGG
* * * * * * ** * * * *
62460664 CAGCGAAGCAGGTCGAAGATGGCAGATTTTACCTCCCTG-A-CT-A
1 CAGTGGAGTAGATTGAAGACGATAGATTCTATCTCCCTGTATTTGG
* *
62460707 CAGTGGAGTACATTGAAGCCGATA-ATTCTATCTCCCTGTATTTGG
1 CAGTGGAGTAGATTGAAGACGATAGATTCTATCTCCCTGTATTTGG
* * * *
62460752 CAGTGGAATAGATTGAAGATTG-CAGA-TCT-TGCCTTCCTGTATTTGG
1 CAGTGGAGTAGATTGAAGA-CGATAGATTCTAT--CTCCCTGTATTTGG
* * * ** * * ** * * * *
62460798 CAGCGAAGCAGATCAAATATGGCAGATTTTACCTCCCTG-A-CT-A
1 CAGTGGAGTAGATTGAAGACGATAGATTCTATCTCCCTGTATTTGG
* *
62460841 CAGTGGAGTACATTGAAGCCGATA-ATTCTATCTCCCTGTATTTGG
1 CAGTGGAGTAGATTGAAGACGATAGATTCTATCTCCCTGTATTTGG
* ** * *
62460886 CAGTGGAATAGATTGAAGATTACAGA-TCT-TGCCTTCCTGTATTTGG
1 CAGTGGAGTAGATTGAAGACGATAGATTCTAT--CTCCCTGTATTTGG
* * ** * * * * *
62460932 CAGTGAAGCAGATCAAAGATG-TCAGATTTTACCTCCCTG-A-CT-A
1 CAGTGGAGTAGATTGAAGACGAT-AGATTCTATCTCCCTGTATTTGG
* * *
62460975 CAGTGGAGTACATTGAAGCCGATA-ACTCTATCTCCCTGTATTTGG
1 CAGTGGAGTAGATTGAAGACGATAGATTCTATCTCCCTGTATTTGG
*
62461020 CAGTGGAATAGATTGAAGA
1 CAGTGGAGTAGATTGAAGA
62461039 TTACAGATCT
Statistics
Matches: 474, Mismatches: 163, Indels: 104
0.64 0.22 0.14
Matches are distributed among these distances:
42 57 0.12
43 73 0.15
44 17 0.04
45 131 0.28
46 186 0.39
47 10 0.02
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (46 bp):
CAGTGGAGTAGATTGAAGACGATAGATTCTATCTCCCTGTATTTGG
Found at i:62461229 original size:40 final size:40
Alignment explanation
Indices: 62461175--62461326 Score: 198
Period size: 40 Copynumber: 3.8 Consensus size: 40
62461165 AAGATTACAA
* *
62461175 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
** *
62461215 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAACCACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GCATCA-AG
* *
62461256 ATCTTATTTCCCTAAGCAATAGTGGAGCAGATCGCATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
*
62461297 TCTTATCTCCCTAAGTAGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
62461327 CTAAAAACAC
Statistics
Matches: 95, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 58 0.61
41 4 0.04
42 31 0.33
43 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.26
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
Found at i:62461268 original size:82 final size:83
Alignment explanation
Indices: 62461173--62461342 Score: 270
Period size: 82 Copynumber: 2.1 Consensus size: 83
62461163 CGAAGATTAC
* * *
62461173 AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAGTCTTATCTCCCTAAGCAGTAGTG
1 AATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
*
62461238 GAGCAGAC-AAAACCACA
66 GAGCAGACTAAAAACACA
* * *
62461255 GATCTTATTTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGTAGTAGTG
1 AATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
62461320 GAGCAGACTAAAAACACA
66 GAGCAGACTAAAAACACA
62461338 AATCT
1 AATCT
62461343 CATCCCCATG
Statistics
Matches: 79, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
82 67 0.85
83 12 0.15
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (83 bp):
AATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
GAGCAGACTAAAAACACA
Found at i:62461279 original size:42 final size:42
Alignment explanation
Indices: 62461174--62461342 Score: 152
Period size: 40 Copynumber: 4.1 Consensus size: 42
62461164 GAAGATTACA
* ** **
62461174 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC-GCATTA-AG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAAACACAG
*
62461215 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAACCACAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAACACAG
* * ** *
62461256 ATCTTATTTCCCTAAGCAATAGTGGAGCAGATC-GCATCA-AG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAAACACAG
* *
62461297 -TCTTATCTCCCTAAGTAGTAGTGGAGCAGACTAAAAACACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGAC-AAAAACACAG
62461339 ATCT
1 ATCT
62461343 CATCCCCATG
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
39 2 0.02
40 58 0.56
41 7 0.07
42 32 0.31
43 4 0.04
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (42 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAACACAG
Found at i:62462317 original size:11 final size:11
Alignment explanation
Indices: 62462301--62462340 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
62462291 TCCTTCCCCC
62462301 CTCCCTTCTCT
1 CTCCCTTCTCT
62462312 CTCCCTTCTCT
1 CTCCCTTCTCT
62462323 CTTCCC-TCTCT
1 C-TCCCTTCTCT
*
62462334 CTTCCTT
1 CTCCCTT
62462341 TTTTTTCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
10 3 0.12
11 19 0.73
12 4 0.15
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:62462828 original size:3 final size:3
Alignment explanation
Indices: 62462804--62462871 Score: 57
Period size: 3 Copynumber: 22.3 Consensus size: 3
62462794 AATATCCTTG
* * * *
62462804 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* *
62462852 TTA GTA TATA TTT TTA TTA T
1 TTA TTA T-TA TTA TTA TTA T
62462872 GTACGCGTAT
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
2 2 0.04
3 42 0.84
4 6 0.12
ACGTcount: A:0.31, C:0.01, G:0.06, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:62462881 original size:23 final size:23
Alignment explanation
Indices: 62462811--62462882 Score: 56
Period size: 23 Copynumber: 3.1 Consensus size: 23
62462801 TTGTTATTTT
* **
62462811 TATATTATTAGTAT-TATTAGTA
1 TATATTATTATTATGTACGAGTA
**
62462833 TTACTATTATTATTATGTATTAGTA
1 -TA-TATTATTATTATGTACGAGTA
* *
62462858 TATATTTTTATTATGTACGCGTA
1 TATATTATTATTATGTACGAGTA
62462881 TA
1 TA
62462883 CATATATATA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
23 21 0.50
24 13 0.31
25 8 0.19
ACGTcount: A:0.32, C:0.04, G:0.10, T:0.54
Consensus pattern (23 bp):
TATATTATTATTATGTACGAGTA
Found at i:62462950 original size:25 final size:24
Alignment explanation
Indices: 62462903--62462950 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
62462893 TATATTTTCA
*
62462903 TATTTAATATTTTTATTTCATTTT
1 TATTTAATATTTTTATTTAATTTT
62462927 TATTCTAATA-TTTTATTATAATTT
1 TATT-TAATATTTTTATT-TAATTT
62462951 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (24 bp):
TATTTAATATTTTTATTTAATTTT
Found at i:62466827 original size:16 final size:17
Alignment explanation
Indices: 62466792--62466826 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
62466782 CGCATAATAT
62466792 AATAAACATATTTAAAA
1 AATAAACATATTTAAAA
62466809 AATAAACAT-TTATAAAA
1 AATAAACATATT-TAAAA
62466826 A
1 A
62466827 TTAATTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.29
Consensus pattern (17 bp):
AATAAACATATTTAAAA
Found at i:62466842 original size:12 final size:12
Alignment explanation
Indices: 62466825--62466851 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
62466815 CATTTATAAA
62466825 AATTAATTTAAT
1 AATTAATTTAAT
62466837 AATTAATTTAAT
1 AATTAATTTAAT
62466849 AAT
1 AAT
62466852 ATTTAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
AATTAATTTAAT
Found at i:62467338 original size:27 final size:27
Alignment explanation
Indices: 62467302--62467359 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
62467292 AATAACTTGT
* * *
62467302 TAGAA-GGGTTGATTAATTGGAAAGCA
1 TAGAATGGGTTAATGAATTAGAAAGCA
62467328 TAGAATGGGTTAATGAATTAGAAAGCA
1 TAGAATGGGTTAATGAATTAGAAAGCA
62467355 -AGAAT
1 TAGAAT
62467360 TTATAAAACT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 10 0.36
27 18 0.64
ACGTcount: A:0.43, C:0.03, G:0.28, T:0.26
Consensus pattern (27 bp):
TAGAATGGGTTAATGAATTAGAAAGCA
Found at i:62469792 original size:978 final size:978
Alignment explanation
Indices: 62467841--62470730 Score: 5448
Period size: 978 Copynumber: 3.0 Consensus size: 978
62467831 CAATGCAGCA
62467841 ATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTCTATATCTTTCTCC
1 ATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC--TATCTTTCTCC
*
62467906 TAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCTGGCGATAATTA
64 TAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCTGCCGATAATTA
62467971 CATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAGGTTTCTCCGGT
129 CATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAGGTTTCTCCGGT
*
62468036 CTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCAAGCTTAAAATG
194 CTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCAAGCTTAACATG
62468101 TAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAGTAGGATAATTG
259 TAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAGTAGGATAATTG
62468166 CTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGGTATCTAGCAGC
324 CTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGGTATCTAGCAGC
62468231 CAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACAGCTTTGA
389 CAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACAGCTTTGA
62468296 CAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGCCCTTTGA
454 CAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGCCCTTTGA
62468361 CTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCATTGCCCG
519 CTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCATTGCCCG
*
62468426 TATGACTTTAAGAGGAGTTGTAGGATAAAAAATGTTCTTGCACTCTGGCTTATCATTTTGATTGC
584 TATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTTTGATTGC
62468491 ATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCACCTGACA
649 ATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCACCTGACA
62468556 TGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAATATGTATT
714 TGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAATATGTATT
62468621 TAAATGCCCTTTTCAAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATCCCATTAC
779 TAAATGCCCTTTTC-AGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATCCCATTAC
62468686 CGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGAATCTTCT
843 CGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGAATCTTCT
62468751 GATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATATCAGACAG
908 GATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATATCAGACAG
62468816 GGCACC
973 GGCACC
62468822 ATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTCTATCTTTCTCCTA
1 ATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTCTATCTTTCTCCTA
62468887 AATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCTGCCGATAATTACA
66 AATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCTGCCGATAATTACA
62468952 TGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAGGTTTCTCCGGTCT
131 TGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAGGTTTCTCCGGTCT
*
62469017 AAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCAAGCTTAACATGTA
196 GAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCAAGCTTAACATGTA
*
62469082 AGGAGCTGACATAGAAACCCCGAAGTTTGGCAACTGCAAAAAGAACACCAAGTAGGATAATTGCT
261 AGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAGTAGGATAATTGCT
62469147 AATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGGTATCTAGCAGCCA
326 AATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGGTATCTAGCAGCCA
62469212 ATATTCCACCAGGAATC-AAATACCCCAGGAGAGGAACAGCATAAACCCATGTACAGCTTTGACA
391 ATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACAGCTTTGACA
62469276 GGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGCCCTTTGACT
456 GGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGCCCTTTGACT
*
62469341 CGTGACAGTATGCATGTTTTTCTCTCTGAGATGTTCATCAGTCCATTTTGAACCCATTGCCCGTA
521 CGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCATTGCCCGTA
62469406 TGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTTTGATTGCAT
586 TGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTTTGATTGCAT
62469471 GATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCACCTGACATG
651 GATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCACCTGACATG
*
62469536 TGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCTAATATGTATTTA
716 TGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAATATGTATTTA
62469601 AATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATCCCATTACCG
781 AATGCCCTTTT-CAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATCCCATTACCG
62469666 AAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGAATCTTCTGA
845 AAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGAATCTTCTGA
62469731 TAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATATCAGACAGGG
910 TAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATATCAGACAGGG
62469796 CACC
975 CACC
62469800 ATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTCTATCTTTCTCCTA
1 ATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTCTATCTTTCTCCTA
62469865 AATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCTGCCGATAATTACA
66 AATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCTGCCGATAATTACA
62469930 TGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAGGTTTCTCCGGTCT
131 TGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAGGTTTCTCCGGTCT
62469995 GAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCAAGCTTAACATGTA
196 GAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCAAGCTTAACATGTA
62470060 AGGAGCTGACATAG-AACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAGTAGGATAATTGCT
261 AGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAGTAGGATAATTGCT
*
62470124 AATCCTGAATATTGTAAGTACATACCATCCATCACCCTTTACATGTTTTAGGTATCTAGCAGCCA
326 AATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGGTATCTAGCAGCCA
62470189 ATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACAGCTTTGACA
391 ATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACAGCTTTGACA
62470254 GGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGCCCTTTGACT
456 GGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGCCCTTTGACT
62470319 CGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCATTGCCCGTA
521 CGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCATTGCCCGTA
62470384 TGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTTTGATTGCAT
586 TGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTTTGATTGCAT
62470449 GATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCACCTGACATG
651 GATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCACCTGACATG
62470514 TGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAATATGTATTTA
716 TGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAATATGTATTTA
62470579 AA--------T--GTAT------T----------TA---A-AGCTATTCACCATCCCATTACCGA
781 AATGCCCTTTTCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATCCCATTACCGA
62470614 AACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGAATCTTCTGAT
846 AACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGAATCTTCTGAT
62470679 AACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACA
911 AACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACA
62470731 ACATAGAAAC
Statistics
Matches: 1895, Mismatches: 12, Indels: 38
0.97 0.01 0.02
Matches are distributed among these distances:
947 141 0.07
948 1 0.00
951 2 0.00
961 1 0.00
967 4 0.00
970 1 0.00
977 130 0.07
978 1211 0.64
979 352 0.19
981 52 0.03
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (978 bp):
ATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTCTATCTTTCTCCTA
AATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCTGCCGATAATTACA
TGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAGGTTTCTCCGGTCT
GAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCAAGCTTAACATGTA
AGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAGTAGGATAATTGCT
AATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGGTATCTAGCAGCCA
ATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACAGCTTTGACA
GGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGCCCTTTGACT
CGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCATTGCCCGTA
TGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTTTGATTGCAT
GATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCACCTGACATG
TGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAATATGTATTTA
AATGCCCTTTTCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATCCCATTACCGA
AACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGAATCTTCTGAT
AACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATATCAGACAGGGC
ACC
Found at i:62472369 original size:302 final size:303
Alignment explanation
Indices: 62471822--62472427 Score: 1205
Period size: 302 Copynumber: 2.0 Consensus size: 303
62471812 TTTAGGTATC
62471822 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62471887 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62471952 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62472017 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62472082 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAA
62472125 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCAT-AACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62472189 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62472254 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62472319 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62472384 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAA
62472427 T
1 T
62472428 GATGCCATCT
Statistics
Matches: 303, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
302 251 0.83
303 52 0.17
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (303 bp):
TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAA
Found at i:62474074 original size:979 final size:979
Alignment explanation
Indices: 62472125--62488390 Score: 32507
Period size: 979 Copynumber: 16.6 Consensus size: 979
62472115 TCCAAAGTAA
62472125 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCAT-AACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62472189 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62472254 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62472319 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62472384 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
62472449 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
326 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
62472514 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
391 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
62472579 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
456 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
62472644 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
521 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
62472709 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
586 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
62472774 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
651 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
62472839 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
716 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
62472904 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
781 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
62472969 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
846 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
62473034 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
911 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
62473099 TATC
976 TATC
62473103 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62473168 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62473233 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62473298 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62473363 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
62473428 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
326 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
62473493 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
391 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
62473558 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
456 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
62473623 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
521 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
62473688 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
586 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
62473753 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
651 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
62473818 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
716 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
62473883 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
781 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
62473948 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
846 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
62474013 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
911 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
62474078 TATC
976 TATC
62474082 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62474147 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62474212 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62474277 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62474342 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
62474407 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
326 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
62474472 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
391 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
62474537 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
456 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
62474602 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
521 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
62474667 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
586 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
62474732 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
651 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
62474797 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
716 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
62474862 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
781 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
62474927 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
846 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
62474992 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
911 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
62475057 TATC
976 TATC
62475061 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62475126 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62475191 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62475256 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62475321 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
62475386 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
326 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
62475451 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
391 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
62475516 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
456 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
62475581 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
521 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
62475646 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
586 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
62475711 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
651 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
62475776 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
716 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
62475841 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
781 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
62475906 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
846 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
62475971 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
911 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
62476036 TATC
976 TATC
62476040 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62476105 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62476170 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62476235 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62476300 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
62476365 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
326 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
62476430 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
391 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
62476495 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
456 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
62476560 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
521 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
62476625 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
586 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
62476690 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
651 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
62476755 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
716 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
62476820 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
781 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
62476885 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
846 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
62476950 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
911 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
62477015 TATC
976 TATC
62477019 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62477084 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62477149 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62477214 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62477279 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
62477344 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
326 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
62477409 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
391 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
62477474 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
456 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
62477539 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
521 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
62477604 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
586 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
62477669 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
651 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
62477734 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
716 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
62477799 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
781 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
62477864 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
846 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
62477929 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
911 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
62477994 TATC
976 TATC
62477998 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62478063 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62478128 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62478193 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62478258 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
62478323 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
326 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
62478388 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
391 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
62478453 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
456 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
62478518 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
521 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
62478583 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
586 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
62478648 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
651 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
62478713 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
716 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
62478778 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
781 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
62478843 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
846 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
62478908 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
911 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
62478973 TATC
976 TATC
62478977 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62479042 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62479107 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62479172 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62479237 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
62479302 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
326 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
62479367 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
391 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
62479432 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
456 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
62479497 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
521 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
62479562 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
586 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
62479627 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
651 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
62479692 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
716 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
62479757 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
781 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
62479822 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
846 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
62479887 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
911 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
62479952 TATC
976 TATC
62479956 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62480021 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62480086 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62480151 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62480216 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
62480281 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
326 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
62480346 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
391 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
62480411 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
456 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
62480476 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
521 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
62480541 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
586 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
62480606 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
651 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
62480671 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
716 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
62480736 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
781 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
62480801 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
846 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
62480866 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
911 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
62480931 TATC
976 TATC
62480935 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62481000 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62481065 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62481130 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62481195 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
62481260 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
326 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
62481325 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
391 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
62481390 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
456 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
62481455 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
521 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
62481520 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
586 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
62481585 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
651 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
62481650 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
716 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
62481715 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
781 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
62481780 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
846 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
62481845 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
911 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
62481910 TATC
976 TATC
62481914 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62481979 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62482044 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62482109 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62482174 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
62482239 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
326 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
62482304 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
391 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
62482369 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
456 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
62482434 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
521 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
62482499 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
586 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
62482564 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
651 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
62482629 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
716 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
62482694 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
781 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
62482759 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
846 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
62482824 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
911 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
62482889 TATC
976 TATC
62482893 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62482958 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62483023 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62483088 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62483153 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
62483218 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
326 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
62483283 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
391 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
62483348 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
456 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
62483413 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
521 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
62483478 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
586 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
62483543 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
651 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
62483608 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
716 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
62483673 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
781 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
62483738 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
846 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
62483803 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
911 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
62483868 TATC
976 TATC
62483872 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62483937 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62484002 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62484067 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62484132 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
62484197 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
326 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
62484262 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
391 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
62484327 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
456 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
62484392 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
521 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
62484457 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
586 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
62484522 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
651 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
62484587 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
716 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
62484652 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
781 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
62484717 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
846 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
62484782 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
911 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
62484847 TATC
976 TATC
62484851 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62484916 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62484981 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62485046 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62485111 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
62485176 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
326 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
62485241 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
391 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
62485306 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
456 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
62485371 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
521 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
62485436 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
586 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
62485501 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
651 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
62485566 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
716 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
62485631 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
781 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
62485696 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
846 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
62485761 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
911 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
62485826 TATC
976 TATC
62485830 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62485895 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62485960 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62486025 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62486090 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
62486155 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
326 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
62486220 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
391 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
62486285 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
456 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
62486350 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
521 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
62486415 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
586 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
62486480 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
651 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
62486545 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
716 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
62486610 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
781 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
62486675 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
846 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
62486740 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
911 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
62486805 TATC
976 TATC
62486809 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62486874 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
62486939 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
62487004 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62487069 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
62487134 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
326 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
62487199 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
391 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
62487264 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
456 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
62487329 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
521 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
62487394 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
586 CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
62487459 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
651 TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
62487524 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
716 GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
62487589 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
781 GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
62487654 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
846 AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
62487719 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
911 TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
62487784 TATC
976 TATC
62487788 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
1 TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
62487853 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
66 GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
*
62487918 CTTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
131 CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
*
62487983 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACCCTGGCTTATCATTT
196 TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
62488048 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
261 TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
62488113 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
326 CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
62488178 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
391 ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
62488243 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
456 CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
62488308 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
521 ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
62488373 CAGACAGGGCACCATCAA
586 CAGACAGGGCACCATCAA
62488391 AAACTTGAAG
Statistics
Matches: 15285, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
978 52 0.00
979 15233 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.28
Consensus pattern (979 bp):
TAGCAGCCAATATTCCACCAGGAATCAAAATACCCCAGGAGAGGAACAGCATAAACCCATGTACA
GCTTTGACAGGTTGTAAACCTTGCTCAGCCTCGGAAGAACCACGGATAAGCAGCACTTGCACAGC
CCTTTGACTCGTGACAGTATGCATGTTTTTCTCACTGAGATGTTCATCAGTCCATTTTGAACCCA
TTGCCCGTATGACTTTAAGAGGAGTTGTAGGATCAAAAATGTTCTTGCACTCTGGCTTATCATTT
TGATTGCATGATGGTTTTAATGGACGTGTGAATTCCAAAGTAATGATGCCATCTTCTGACCTGCA
CCTGACATGTGTTAGATTCTCATTTGTTAGATGGATGTTCAAGGGATGCTTTCCATCAATCCAAT
ATGTATTTAAATGCCCTTTTCCAGTATCGCCAATCCAGCCCACATATGCATAGCTATTCACCATC
CCATTACCGAAACCTATTGCAAGATAGCCACTCTTATTCACACCACGGGCAGCAATAGTTATTGA
ATCTTCTGATAACGTCCAAAAGAAAGTAACTTGATCATCTAAAAGCACACTAGTGTTATACATAT
CAGACAGGGCACCATCAAGAACCATATTATTAATACCCAGCTAAGATCGTGAACGTTTTCTACTC
TATCTTTCTCCTAAATGCTTCATTCCAGTGAAAAGTGCTGCAATTCGTACGGCAATGGCACCTCT
GCCGATAATTACATGGAAATACTCCCAAATTAATCTCTTTGTGGAAGCGTCCTCCTCATTAGCAG
GTTTCTCCGGTCTGAGATATGCATTCATTGGTTGCACAAAGGCAAAAACTATGGCAGCAATACCA
AGCTTAACATGTAAGGAGCTGACATAGAAACCCCGAAGTTCGGCAACTGCAAAAAGAACACCAAG
TAGGATAATTGCTAATCCTGAATATTGTAGGTACATACCATCCATCACCCTTTACATGTTTTAGG
TATC
Found at i:62493035 original size:20 final size:20
Alignment explanation
Indices: 62493007--62493045 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
62492997 CTCTTCTAGC
62493007 TTTCATCTTCT-TTTTCATCT
1 TTTCATCTT-TGTTTTCATCT
*
62493027 TTTCTTCTTTGTTTTCATC
1 TTTCATCTTTGTTTTCATC
62493046 CCCAATAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.08, C:0.23, G:0.03, T:0.67
Consensus pattern (20 bp):
TTTCATCTTTGTTTTCATCT
Found at i:62498516 original size:31 final size:31
Alignment explanation
Indices: 62498439--62498517 Score: 90
Period size: 31 Copynumber: 2.5 Consensus size: 31
62498429 CTATGAAAAT
*
62498439 TTTCAATTTTATCACT-ATCGTTTTAGATCA
1 TTTCTATTTTATCACTCATCGTTTTAGATCA
* *
62498469 TTTCTATTTTGGTCACTCAT-GTTTTAGATCG
1 TTTCTATTTT-ATCACTCATCGTTTTAGATCA
*
62498500 TTTTTATTTTATTCACTC
1 TTTCTATTTTA-TCACTC
62498518 TTCAGTAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
30 9 0.22
31 30 0.73
32 2 0.05
ACGTcount: A:0.20, C:0.16, G:0.09, T:0.54
Consensus pattern (31 bp):
TTTCTATTTTATCACTCATCGTTTTAGATCA
Found at i:62499631 original size:31 final size:31
Alignment explanation
Indices: 62499595--62499663 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
62499585 ATGTAACGGA
* *
62499595 GAGTGACCAAAATAGAAACAATCTAAAGTGT
1 GAGTGACCAAAATAGAAACAATATAAAATGT
*
62499626 GAGTGACCAAAATAGAAATAATATAAAATGT
1 GAGTGACCAAAATAGAAACAATATAAAATGT
*
62499657 AAGTGAC
1 GAGTGAC
62499664 TAAATAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.51, C:0.10, G:0.19, T:0.20
Consensus pattern (31 bp):
GAGTGACCAAAATAGAAACAATATAAAATGT
Found at i:62503517 original size:24 final size:24
Alignment explanation
Indices: 62503455--62503511 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
62503445 GAAACAAAAT
* *
62503455 AATATATATAGAACAATTTGAAGTA
1 AATA-ATATAAAACAATTTAAAGTA
* *
62503480 ACTAGTATAAAACAATTTAAAGTA
1 AATAATATAAAACAATTTAAAGTA
62503504 AATAATAT
1 AATAATAT
62503512 GCAACATAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.54, C:0.05, G:0.09, T:0.32
Consensus pattern (24 bp):
AATAATATAAAACAATTTAAAGTA
Found at i:62508010 original size:69 final size:69
Alignment explanation
Indices: 62507899--62508037 Score: 278
Period size: 69 Copynumber: 2.0 Consensus size: 69
62507889 AATATGTCAC
62507899 TCAAAATCTCAAATTCATCCAACAAAAAGAAATCATCACTTTAGTTAATTAAATCAAGAACAAAT
1 TCAAAATCTCAAATTCATCCAACAAAAAGAAATCATCACTTTAGTTAATTAAATCAAGAACAAAT
62507964 AAAG
66 AAAG
62507968 TCAAAATCTCAAATTCATCCAACAAAAAGAAATCATCACTTTAGTTAATTAAATCAAGAACAAAT
1 TCAAAATCTCAAATTCATCCAACAAAAAGAAATCATCACTTTAGTTAATTAAATCAAGAACAAAT
62508033 AAAG
66 AAAG
62508037 T
1 T
62508038 TATGGATGAA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.52, C:0.17, G:0.06, T:0.25
Consensus pattern (69 bp):
TCAAAATCTCAAATTCATCCAACAAAAAGAAATCATCACTTTAGTTAATTAAATCAAGAACAAAT
AAAG
Found at i:62509182 original size:69 final size:69
Alignment explanation
Indices: 62509071--62509209 Score: 278
Period size: 69 Copynumber: 2.0 Consensus size: 69
62509061 AATATGTCAC
62509071 TCAAAATCTCAAATTCATCCAACAAAAAGAAATCATCACTTTAGTTAATTAAATCAAGAACAAAT
1 TCAAAATCTCAAATTCATCCAACAAAAAGAAATCATCACTTTAGTTAATTAAATCAAGAACAAAT
62509136 AAAG
66 AAAG
62509140 TCAAAATCTCAAATTCATCCAACAAAAAGAAATCATCACTTTAGTTAATTAAATCAAGAACAAAT
1 TCAAAATCTCAAATTCATCCAACAAAAAGAAATCATCACTTTAGTTAATTAAATCAAGAACAAAT
62509205 AAAG
66 AAAG
62509209 T
1 T
62509210 TATGGATGAA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.52, C:0.17, G:0.06, T:0.25
Consensus pattern (69 bp):
TCAAAATCTCAAATTCATCCAACAAAAAGAAATCATCACTTTAGTTAATTAAATCAAGAACAAAT
AAAG
Found at i:62520498 original size:28 final size:31
Alignment explanation
Indices: 62520434--62520499 Score: 86
Period size: 28 Copynumber: 2.3 Consensus size: 31
62520424 TGTTTAAAAG
*
62520434 AATT-AAAAAATATATAGAAAGTTATATAAA
1 AATTCAAAAAAAATATAGAAAGTTATATAAA
*
62520464 AATTCAAAAAAAATATA-AAAG-TGT-TAAA
1 AATTCAAAAAAAATATAGAAAGTTATATAAA
62520492 AATTCAAA
1 AATTCAAA
62520500 TATATATAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 12 0.36
29 2 0.06
30 8 0.24
31 11 0.33
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.27
Consensus pattern (31 bp):
AATTCAAAAAAAATATAGAAAGTTATATAAA
Found at i:62520546 original size:54 final size:56
Alignment explanation
Indices: 62520441--62520548 Score: 134
Period size: 56 Copynumber: 2.0 Consensus size: 56
62520431 AAGAATTAAA
*
62520441 AAATATATAGAAAGTTATATAAAAATTCAAAAAAAATATAAAAGTGTTAAAAATTC
1 AAATATATAGAAAGTTATATAAAAATTCAAAAAAAATATAAAAGTGATAAAAATTC
* * *
62520497 AAATATATATAAA-TTAT-TAAAATTTCAAAAGGAATATATAAAA-T-ATAAAAAT
1 AAATATATAGAAAGTTATATAAAAATTCAAAA--AAAATATAAAAGTGATAAAAAT
62520549 AGTAAAAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
54 19 0.41
55 5 0.11
56 22 0.48
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.31
Consensus pattern (56 bp):
AAATATATAGAAAGTTATATAAAAATTCAAAAAAAATATAAAAGTGATAAAAATTC
Found at i:62525767 original size:31 final size:31
Alignment explanation
Indices: 62525729--62525790 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
62525719 TTTGGCATAG
62525729 ATGAAGTTGGAGTAAATGGCAAGCTGGGTTT
1 ATGAAGTTGGAGTAAATGGCAAGCTGGGTTT
62525760 ATGAAGTTGGAGTAAATGGCAAGCTGGGTTT
1 ATGAAGTTGGAGTAAATGGCAAGCTGGGTTT
62525791 GCTTGGTGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.06, G:0.35, T:0.29
Consensus pattern (31 bp):
ATGAAGTTGGAGTAAATGGCAAGCTGGGTTT
Found at i:62540649 original size:21 final size:21
Alignment explanation
Indices: 62540594--62540651 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 21
62540584 CTCCAACTTA
62540594 AAGCAGAGGCTA-CAGCGAGGG
1 AAGCAGAGGC-AGCAGCGAGGG
62540615 AAGC--A-GCAGCAGCGAGGG
1 AAGCAGAGGCAGCAGCGAGGG
*
62540633 AAGCAGAGGCAGTAGCGAG
1 AAGCAGAGGCAGCAGCGAG
62540652 AAAAGCTGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
17 1 0.03
18 15 0.47
19 1 0.03
20 1 0.03
21 14 0.44
ACGTcount: A:0.34, C:0.19, G:0.43, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCAGCAGCGAGGG
Found at i:62540715 original size:105 final size:105
Alignment explanation
Indices: 62540528--62540725 Score: 254
Period size: 105 Copynumber: 1.9 Consensus size: 105
62540518 ACTCAACTTA
* * * * *
62540528 AAGCGGAGGCAGCATCGAGAGAAGCTGGGGTCCAAAGAAAATATGAAGAACTCCAACTCCAACTT
1 AAGCAGAGGCAGCAGCGAGAAAAGCTGAGGTCCAAAGAAAATATGAAGAACTCCAACTACAACTT
*
62540593 AAAGCAGAGGCTACAGCGAGGGAAGCAGCAGCAGCGAGGG
66 AAAGCAGAGGCTACAGCGAGAGAAGCAGCAGCAGCGAGGG
* * * * *
62540633 AAGCAGAGGCAGTAGCGAGAAAAGCTGAGGTTCAAAGAAAATATGAAGAATTCCAGCTATAACTT
1 AAGCAGAGGCAGCAGCGAGAAAAGCTGAGGTCCAAAGAAAATATGAAGAACTCCAACTACAACTT
* * *
62540698 AAATCTGATGC-AGCAGCGAGAGAAGCAG
66 AAAGCAGAGGCTA-CAGCGAGAGAAGCAG
62540726 AGGCTGTAGT
Statistics
Matches: 78, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
104 1 0.01
105 77 0.99
ACGTcount: A:0.39, C:0.18, G:0.30, T:0.13
Consensus pattern (105 bp):
AAGCAGAGGCAGCAGCGAGAAAAGCTGAGGTCCAAAGAAAATATGAAGAACTCCAACTACAACTT
AAAGCAGAGGCTACAGCGAGAGAAGCAGCAGCAGCGAGGG
Found at i:62540758 original size:105 final size:104
Alignment explanation
Indices: 62540544--62540759 Score: 224
Period size: 105 Copynumber: 2.1 Consensus size: 104
62540534 AGGCAGCATC
* * *
62540544 GAGAGAAGCTGGGGTCCAAAGAAAATATGAAGAACTCCAACTCCAACTTAAAGCAGAGGCTACAG
1 GAGAAAAGCTGAGGTCCAAAGAAAATATGAAGAACTCCAACTACAACTTAAAGCAGAGGCTACAG
* **
62540609 CGAGGGAAGCAGCAGCAGCGAGGGAAGCAGAGGCAGTAGC
66 CGAGAGAAGCAGCAGCAGCGAGGGAAGCAGAGGCAG-AAA
* * * * * * *
62540649 GAGAAAAGCTGAGGTTCAAAGAAAATATGAAGAATTCCAGCTATAACTTAAATCTGATGC-AGCA
1 GAGAAAAGCTGAGGTCCAAAGAAAATATGAAGAACTCCAACTACAACTTAAAGCAGAGGCTA-CA
*
62540713 GCGAGAGAAGCAG-AGGCTGTAGTGAGGGAAGCAGA-GCA-AAA
65 GCGAGAGAAGCAGCA-GC---AGCGAGGGAAGCAGAGGCAGAAA
62540754 GAGAAA
1 GAGAAA
62540760 GTACGACGAC
Statistics
Matches: 92, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
104 2 0.02
105 73 0.79
107 3 0.03
108 14 0.15
ACGTcount: A:0.41, C:0.16, G:0.31, T:0.12
Consensus pattern (104 bp):
GAGAAAAGCTGAGGTCCAAAGAAAATATGAAGAACTCCAACTACAACTTAAAGCAGAGGCTACAG
CGAGAGAAGCAGCAGCAGCGAGGGAAGCAGAGGCAGAAA
Found at i:62540942 original size:26 final size:26
Alignment explanation
Indices: 62540892--62540942 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
62540882 AATAATATAA
*
62540892 ATTAAATATCATTTATTAATATTTAT
1 ATTAAATATCATTCATTAATATTTAT
*
62540918 ATTATATATCATTCATTTAAT-TTTA
1 ATTAAATATCATTCA-TTAATATTTA
62540943 AATATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (26 bp):
ATTAAATATCATTCATTAATATTTAT
Found at i:62541170 original size:86 final size:86
Alignment explanation
Indices: 62541080--62541279 Score: 237
Period size: 86 Copynumber: 2.3 Consensus size: 86
62541070 GACCTATCGT
* * * *
62541080 GGCGTTTGTGGAAAAAGCTCCACTAAAGCTCCAGAG-CTCTAGCGGTGTTTGTGGAA-AAAGCGC
1 GGCGTTTGTGGAAAAAGCGCCACTAAAGCTCCAG-GTCTATAGCAGCGTTTGT-GAAGAAAGCGC
62541143 CGCTAAAGGTCCTGATCTATAGC
64 CGCTAAAGGTCCTGATCTATAGC
* * ** *
62541166 GGCGTTTATGGGAAAAA-CGCCACTAAAGGTCTTGGTCTATAGCAGCGTTTGTGAAGAAAGCGTC
1 GGCGTTTGT-GGAAAAAGCGCCACTAAAGCTCCAGGTCTATAGCAGCGTTTGTGAAGAAAGCGCC
62541230 GCTAAAGGTCCTGATCTATAGC
65 GCTAAAGGTCCTGATCTATAGC
* *
62541252 GGCGTTTGT-GAAGAAAGCGTCGCTAAAG
1 GGCGTTTGTGGAA-AAAGCGCCACTAAAG
62541280 GTCCCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
84 3 0.03
85 7 0.07
86 80 0.82
87 7 0.07
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (86 bp):
GGCGTTTGTGGAAAAAGCGCCACTAAAGCTCCAGGTCTATAGCAGCGTTTGTGAAGAAAGCGCCG
CTAAAGGTCCTGATCTATAGC
Found at i:62541280 original size:43 final size:42
Alignment explanation
Indices: 62541080--62541283 Score: 214
Period size: 43 Copynumber: 4.7 Consensus size: 42
62541070 GACCTATCGT
* * * * *
62541080 GGCGTTTGTGGAAAAAGC-TCCACTAAAGCTCCAGAGCTCTAGC
1 GGCGTTTGT-GAAAAAGCGT-CGCTAAAGGTCCTGATCTATAGC
* *
62541123 GGTGTTTGTGGAAAAAGCGCCGCTAAAGGTCCTGATCTATAGC
1 GGCGTTTGT-GAAAAAGCGTCGCTAAAGGTCCTGATCTATAGC
* * * * *
62541166 GGCGTTTATGGGAAAAA-CGCCACTAAAGGTCTTGGTCTATAGC
1 GGCG-TT-TGTGAAAAAGCGTCGCTAAAGGTCCTGATCTATAGC
*
62541209 AGCGTTTGTGAAGAAAGCGTCGCTAAAGGTCCTGATCTATAGC
1 GGCGTTTGTGAA-AAAGCGTCGCTAAAGGTCCTGATCTATAGC
62541252 GGCGTTTGTGAAGAAAGCGTCGCTAAAGGTCC
1 GGCGTTTGTGAA-AAAGCGTCGCTAAAGGTCC
62541284 CAATTTCACA
Statistics
Matches: 137, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
41 5 0.04
42 5 0.04
43 117 0.85
44 8 0.06
45 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (42 bp):
GGCGTTTGTGAAAAAGCGTCGCTAAAGGTCCTGATCTATAGC
Found at i:62541393 original size:112 final size:113
Alignment explanation
Indices: 62541188--62541395 Score: 267
Period size: 112 Copynumber: 1.8 Consensus size: 113
62541178 AAAAACGCCA
* * * *
62541188 CTAAAGGTCTTGGTCTATAGCAGCGTTTGTGAAGAAAGCGTCGCTAAAGGTCCTGATCTATAGCG
1 CTAAAGGTCTTGATCTATAGCAGCGTTTCTGAAGAAAGCGCCACTAAAGGTCCTGATCTATAGCG
* * *
62541253 GCGTTTGTGAAGAAAGCGTCGCTAAAGGTCCCAATTTCACAAACGTCG
66 GCATTTGTGAAGAAAACGCCGCTAAAGGTCCCAATTTCACAAACGTCG
* * *
62541301 CTAAAGGTCTTGATCTATAGC-GACGTTTCTG-AGGAAGTGCCACTAAAGGTCCTGATCTATAGT
1 CTAAAGGTCTTGATCTATAGCAG-CGTTTCTGAAGAAAGCGCCACTAAAGGTCCTGATCTATAGC
* ** *
62541364 GGCATTTTTGGGGAAAATGCCGCTAAAGGTCC
65 GGCATTTGTGAAGAAAACGCCGCTAAAGGTCC
62541396 TGATCTTTAG
Statistics
Matches: 80, Mismatches: 14, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
112 53 0.66
113 27 0.34
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (113 bp):
CTAAAGGTCTTGATCTATAGCAGCGTTTCTGAAGAAAGCGCCACTAAAGGTCCTGATCTATAGCG
GCATTTGTGAAGAAAACGCCGCTAAAGGTCCCAATTTCACAAACGTCG
Found at i:62541395 original size:43 final size:42
Alignment explanation
Indices: 62541299--62541408 Score: 130
Period size: 42 Copynumber: 2.6 Consensus size: 42
62541289 TCACAAACGT
* * * * *
62541299 CGCTAAAGGTCTTGATCTATAGCGACGTTTCTGAGGAAGTGC
1 CGCTAAAGGTCCTGATCTATAGTGGCATTTCTGAGGAAATGC
* * *
62541341 CACTAAAGGTCCTGATCTATAGTGGCATTTTTGGGGAAAATGC
1 CGCTAAAGGTCCTGATCTATAGTGGCATTTCTGAGG-AAATGC
*
62541384 CGCTAAAGGTCCTGATCTTTAGTGG
1 CGCTAAAGGTCCTGATCTATAGTGG
62541409 TGCTTGTAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 29 0.51
43 28 0.49
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (42 bp):
CGCTAAAGGTCCTGATCTATAGTGGCATTTCTGAGGAAATGC
Found at i:62542395 original size:24 final size:26
Alignment explanation
Indices: 62542358--62542406 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 26
62542348 AATTCAATTG
*
62542358 AATTTCTTCTCCTAATTAAACTCTGC
1 AATTTCTTCTCCTAATCAAACTCTGC
62542384 AATTT-TT-TCCTAATCAAACTCTG
1 AATTTCTTCTCCTAATCAAACTCTG
62542407 ATTAGTCTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 15 0.68
25 2 0.09
26 5 0.23
ACGTcount: A:0.29, C:0.24, G:0.04, T:0.43
Consensus pattern (26 bp):
AATTTCTTCTCCTAATCAAACTCTGC
Found at i:62543191 original size:27 final size:27
Alignment explanation
Indices: 62543154--62543229 Score: 93
Period size: 27 Copynumber: 2.7 Consensus size: 27
62543144 AGCAGGCCAG
*
62543154 AAAAAAGAAAGGAGAAAAAAGGA-AAA
1 AAAAAAAAAAGGAGAAAAAAGGAGAAA
62543180 AAGAAAAAAAAGG-GAAAAAAAGGAGAAA
1 AA-AAAAAAAAGGAG-AAAAAAGGAGAAA
62543208 AAATAAAAAAAGGAAGAAAAAA
1 AAA-AAAAAAAGG-AGAAAAAA
62543230 AAGCCCAAGT
Statistics
Matches: 43, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
26 3 0.07
27 19 0.44
28 14 0.33
29 6 0.14
30 1 0.02
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.01
Consensus pattern (27 bp):
AAAAAAAAAAGGAGAAAAAAGGAGAAA
Found at i:62543206 original size:37 final size:40
Alignment explanation
Indices: 62543156--62543229 Score: 109
Period size: 37 Copynumber: 1.9 Consensus size: 40
62543146 CAGGCCAGAA
*
62543156 AAAAGAAAGGAGAAAAAAGGAAAAAA-GAA-AAAAAAGGG
1 AAAAGAAAGGAGAAAAAAGAAAAAAAGGAAGAAAAAAGGG
*
62543194 AAAA-AAAGGAGAAAAAATAAAAAAAGGAAGAAAAAA
1 AAAAGAAAGGAGAAAAAAGAAAAAAAGGAAGAAAAAA
62543230 AAGCCCAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
37 19 0.59
38 7 0.22
39 6 0.19
ACGTcount: A:0.77, C:0.00, G:0.22, T:0.01
Consensus pattern (40 bp):
AAAAGAAAGGAGAAAAAAGAAAAAAAGGAAGAAAAAAGGG
Found at i:62543208 original size:18 final size:18
Alignment explanation
Indices: 62543156--62543228 Score: 67
Period size: 19 Copynumber: 3.9 Consensus size: 18
62543146 CAGGCCAGAA
62543156 AAAAGAAAGGAGAAAAAAGG
1 AAAA-AAAGGAG-AAAAAGG
* *
62543176 -AAAAAAGAAAAAAAAGGG
1 AAAAAAAGGAGAAAAA-GG
**
62543194 AAAAAAAGGAGAAAAAAT
1 AAAAAAAGGAGAAAAAGG
62543212 AAAAAAAGGAAGAAAAA
1 AAAAAAAGG-AGAAAAA
62543229 AAAGCCCAAG
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
17 5 0.11
18 16 0.36
19 23 0.52
ACGTcount: A:0.77, C:0.00, G:0.22, T:0.01
Consensus pattern (18 bp):
AAAAAAAGGAGAAAAAGG
Found at i:62543791 original size:17 final size:17
Alignment explanation
Indices: 62543771--62543817 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
62543761 ACGATACTTC
62543771 TTTAAAAAAAATTCGTG
1 TTTAAAAAAAATTCGTG
**
62543788 TTTAAAAAATTTTCGTG
1 TTTAAAAAAAATTCGTG
**
62543805 TTTTCAAAAAATT
1 TTTAAAAAAAATT
62543818 TTCATGTTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.43, C:0.06, G:0.09, T:0.43
Consensus pattern (17 bp):
TTTAAAAAAAATTCGTG
Found at i:62543840 original size:54 final size:54
Alignment explanation
Indices: 62543782--62543898 Score: 155
Period size: 54 Copynumber: 2.2 Consensus size: 54
62543772 TTAAAAAAAA
* ** *
62543782 TTCGTGTTTAAAAAATTTTCGTGTTTTCAAAAAATTTTCATGT-TTTCAAAAATT
1 TTCGTGTTTAAAAAATTTTCGAG-TTTCAAAAAAAATTCATGTGTCTCAAAAATT
* * *
62543836 TTCGTGTTTCAAAAGTTTTCGAGTTTCAAAAAAAATTCTTGTGTCTCAAAAATT
1 TTCGTGTTTAAAAAATTTTCGAGTTTCAAAAAAAATTCATGTGTCTCAAAAATT
62543890 TTCGTGTTT
1 TTCGTGTTT
62543899 TCAAAAAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
53 16 0.29
54 39 0.71
ACGTcount: A:0.31, C:0.11, G:0.12, T:0.46
Consensus pattern (54 bp):
TTCGTGTTTAAAAAATTTTCGAGTTTCAAAAAAAATTCATGTGTCTCAAAAATT
Found at i:62543856 original size:17 final size:17
Alignment explanation
Indices: 62543782--62543905 Score: 124
Period size: 17 Copynumber: 6.9 Consensus size: 17
62543772 TTAAAAAAAA
*
62543782 TTCGTGTTTAAAAAATT
1 TTCGTGTTTCAAAAATT
62543799 TTCGTGTTTTCAAAAAATT
1 TTCGTG-TTTC-AAAAATT
*
62543818 TTCATGTTTTCAAAAATT
1 TTCGTG-TTTCAAAAATT
*
62543836 TTCGTGTTTCAAAAGTT
1 TTCGTGTTTCAAAAATT
*
62543853 TTCGAGTTTCAAAAAAAATT
1 TTCGTGTTTC---AAAAATT
*
62543873 CTT-GTGTCTCAAAAATT
1 -TTCGTGTTTCAAAAATT
62543890 TTCGTGTTTTCAAAAA
1 TTCGTG-TTTCAAAAA
62543906 AAATATTGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
16 2 0.02
17 35 0.39
18 23 0.26
19 17 0.19
20 11 0.12
21 2 0.02
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (17 bp):
TTCGTGTTTCAAAAATT
Found at i:62543922 original size:37 final size:37
Alignment explanation
Indices: 62543791--62543923 Score: 121
Period size: 37 Copynumber: 3.6 Consensus size: 37
62543781 ATTCGTGTTT
* *
62543791 AAAAAATTTTCGTGTTTTCAAAAAATTTTCATGTTTTC--
1 AAAAAATATT-GTG-TTTC-AAAAATTTTCGTGTTTTCAA
* * *
62543829 -AAAAATTTTCGTGTTTCAAAAGTTTTCGAG-TTTCAA
1 AAAAAATATT-GTGTTTCAAAAATTTTCGTGTTTTCAA
* *
62543865 AAAAAATTCTTGTGTCTCAAAAATTTTCGTGTTTTCAA
1 AAAAAA-TATTGTGTTTCAAAAATTTTCGTGTTTTCAA
*
62543903 AAAAAATATTGTATTTCAAAA
1 AAAAAATATTGTGTTTCAAAA
62543924 TTCTCATATT
Statistics
Matches: 80, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
34 4 0.05
35 10 0.12
36 4 0.05
37 47 0.59
38 15 0.19
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.42
Consensus pattern (37 bp):
AAAAAATATTGTGTTTCAAAAATTTTCGTGTTTTCAA
Found at i:62545144 original size:28 final size:28
Alignment explanation
Indices: 62545106--62545164 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
62545096 CAACTAGATA
62545106 AAAACAGATTCAAGATAGCAATGTGAAT
1 AAAACAGATTCAAGATAGCAATGTGAAT
62545134 AAAACAGATTCAAGATAGCAATGTGAAT
1 AAAACAGATTCAAGATAGCAATGTGAAT
62545162 AAA
1 AAA
62545165 TTATAGAGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.53, C:0.10, G:0.17, T:0.20
Consensus pattern (28 bp):
AAAACAGATTCAAGATAGCAATGTGAAT
Found at i:62545340 original size:5 final size:5
Alignment explanation
Indices: 62545332--62545367 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
62545322 ATGTAATGTA
62545332 TAATT TAATT TAATT TAATT TAATT TAATT TAATT T
1 TAATT TAATT TAATT TAATT TAATT TAATT TAATT T
62545368 TCAAGTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TAATT
Found at i:62554217 original size:27 final size:27
Alignment explanation
Indices: 62554187--62554242 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
62554177 CATAAACTTT
62554187 GTCTCCACAATCAGATGATGAGATTGA
1 GTCTCCACAATCAGATGATGAGATTGA
62554214 GTCTCCACAATCAGATGATGAGATTGA
1 GTCTCCACAATCAGATGATGAGATTGA
62554241 GT
1 GT
62554243 ACATGTCACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (27 bp):
GTCTCCACAATCAGATGATGAGATTGA
Found at i:62557320 original size:23 final size:22
Alignment explanation
Indices: 62557278--62557322 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
62557268 ACTTGAGGAA
*
62557278 TTTTATATATCTTTTGTTTTTC
1 TTTTATATATCTTTTATTTTTC
62557300 TTTTA-ATATCTTACTTATTTTTC
1 TTTTATATATCTT--TTATTTTTC
62557323 ATAGTTTATG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 7 0.35
22 5 0.25
23 8 0.40
ACGTcount: A:0.18, C:0.11, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTTATATATCTTTTATTTTTC
Found at i:62566867 original size:8 final size:8
Alignment explanation
Indices: 62566854--62566889 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
62566844 AGTGAAATAT
62566854 TATTTTTA
1 TATTTTTA
*
62566862 TATTTTAA
1 TATTTTTA
62566870 TTATTTTTA
1 -TATTTTTA
62566879 TATTTTTA
1 TATTTTTA
62566887 TAT
1 TAT
62566890 AACTTTTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
8 18 0.72
9 7 0.28
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (8 bp):
TATTTTTA
Found at i:62566872 original size:17 final size:17
Alignment explanation
Indices: 62566852--62566884 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
62566842 TTAGTGAAAT
62566852 ATTATTTTTATATTTTA
1 ATTATTTTTATATTTTA
62566869 ATTATTTTTATATTTT
1 ATTATTTTTATATTTT
62566885 TATATAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
ATTATTTTTATATTTTA
Found at i:62570582 original size:2 final size:2
Alignment explanation
Indices: 62570577--62570609 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
62570567 TCACTTGTTT
62570577 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
62570610 CTCGTTGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:62571280 original size:27 final size:27
Alignment explanation
Indices: 62571229--62571280 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
62571219 ATCACTATCG
*
62571229 TTTTAGATCATTTCTAATTTGCTCACT
1 TTTTAGATCATTTCTAATTTACTCACT
* * *
62571256 TTTTAGATCGTTTTTATTTTACTCA
1 TTTTAGATCATTTCTAATTTACTCA
62571281 ATCTTCGTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.21, C:0.15, G:0.08, T:0.56
Consensus pattern (27 bp):
TTTTAGATCATTTCTAATTTACTCACT
Found at i:62575369 original size:27 final size:27
Alignment explanation
Indices: 62575308--62575472 Score: 179
Period size: 27 Copynumber: 6.1 Consensus size: 27
62575298 TTACACTGTT
* * * *
62575308 ATGACCGAAATA-CCCTATAAGATAAA
1 ATGACCAAAATACCCCCATAGGGTAAA
*
62575334 ATGACCAAAATACCCCCATATGGTAAA
1 ATGACCAAAATACCCCCATAGGGTAAA
* *
62575361 ATGATCAAAATACCCCTATAGGGTAAA
1 ATGACCAAAATACCCCCATAGGGTAAA
* **
62575388 ATAACCAAAATACCCTGATAGGGTAAA
1 ATGACCAAAATACCCCCATAGGGTAAA
* * * *
62575415 ATTATCAAAATACCCCCACAAGGTAAA
1 ATGACCAAAATACCCCCATAGGGTAAA
* *
62575442 ATAACCTAAATACCCCCATAGGGTAAA
1 ATGACCAAAATACCCCCATAGGGTAAA
62575469 ATGA
1 ATGA
62575473 TTGTTATACC
Statistics
Matches: 115, Mismatches: 23, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
26 11 0.10
27 104 0.90
ACGTcount: A:0.47, C:0.22, G:0.12, T:0.19
Consensus pattern (27 bp):
ATGACCAAAATACCCCCATAGGGTAAA
Found at i:62575389 original size:54 final size:54
Alignment explanation
Indices: 62575315--62575473 Score: 221
Period size: 54 Copynumber: 3.0 Consensus size: 54
62575305 GTTATGACCG
* * *
62575315 AAATA-CCCTATAAGATAAAATGACCAAAATACCCCCATATGGTAAAATGATCA
1 AAATACCCCTATAAGGTAAAATAACCAAAATACCCCCATAGGGTAAAATGATCA
* ** *
62575368 AAATACCCCTATAGGGTAAAATAACCAAAATACCCTGATAGGGTAAAATTATCA
1 AAATACCCCTATAAGGTAAAATAACCAAAATACCCCCATAGGGTAAAATGATCA
* * *
62575422 AAATACCCCCACAAGGTAAAATAACCTAAATACCCCCATAGGGTAAAATGAT
1 AAATACCCCTATAAGGTAAAATAACCAAAATACCCCCATAGGGTAAAATGAT
62575474 TGTTATACCC
Statistics
Matches: 91, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
53 5 0.05
54 86 0.95
ACGTcount: A:0.47, C:0.21, G:0.11, T:0.20
Consensus pattern (54 bp):
AAATACCCCTATAAGGTAAAATAACCAAAATACCCCCATAGGGTAAAATGATCA
Found at i:62575483 original size:81 final size:80
Alignment explanation
Indices: 62575315--62575470 Score: 213
Period size: 81 Copynumber: 1.9 Consensus size: 80
62575305 GTTATGACCG
* * * * *
62575315 AAATACCCTATAAGATAAAATGACCAAAATACCCCCATATGGTAAAATGATCAAAATACCCCTAT
1 AAATACCCTATAAGATAAAATGACCAAAATACCCCCACAAGGTAAAATAACCAAAATACCCCCAT
62575380 AGGGTAAAATAACCA
66 AGGGTAAAATAACCA
* * * * *
62575395 AAATACCCTGATAGGGTAAAATTATCAAAATACCCCCACAAGGTAAAATAACCTAAATACCCCCA
1 AAATACCCT-ATAAGATAAAATGACCAAAATACCCCCACAAGGTAAAATAACCAAAATACCCCCA
62575460 TAGGGTAAAAT
65 TAGGGTAAAAT
62575471 GATTGTTATA
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 9 0.14
81 56 0.86
ACGTcount: A:0.47, C:0.22, G:0.11, T:0.20
Consensus pattern (80 bp):
AAATACCCTATAAGATAAAATGACCAAAATACCCCCACAAGGTAAAATAACCAAAATACCCCCAT
AGGGTAAAATAACCA
Found at i:62584823 original size:9 final size:9
Alignment explanation
Indices: 62584791--62585265 Score: 313
Period size: 9 Copynumber: 56.2 Consensus size: 9
62584781 TATAAATGAC
62584791 TTATGTAAG
1 TTATGTAAG
*
62584800 TTACGTAAG
1 TTATGTAAG
62584809 TTATGTAAG
1 TTATGTAAG
*
62584818 TAATGT-A-
1 TTATGTAAG
62584825 TTATGTAAG
1 TTATGTAAG
* *
62584834 TTGTGTATAATA
1 TTATG--TAA-G
*
62584846 TTATTTAAG
1 TTATGTAAG
62584855 TTATGTAAG
1 TTATGTAAG
*
62584864 TTGTGT-A-
1 TTATGTAAG
62584871 TTATGTAAG
1 TTATGTAAG
*
62584880 TTACGTAAG
1 TTATGTAAG
*
62584889 TTATGTAGG
1 TTATGTAAG
* *
62584898 CTATGT--T
1 TTATGTAAG
62584905 TTATGTAAG
1 TTATGTAAG
*
62584914 TTACGTAAG
1 TTATGTAAG
*
62584923 TTATGTAGG
1 TTATGTAAG
* **
62584932 CTA--TATT
1 TTATGTAAG
62584939 TTATGTAAG
1 TTATGTAAG
*
62584948 TTATTTAAG
1 TTATGTAAG
62584957 TTATGTAAG
1 TTATGTAAG
*
62584966 CTATGT-A-
1 TTATGTAAG
*
62584973 TTATGCAAG
1 TTATGTAAG
62584982 TTATGTAAG
1 TTATGTAAG
62584991 -TAGTGT-A-
1 TTA-TGTAAG
*
62584998 TTATGAAAG
1 TTATGTAAG
62585007 TTATGTAAG
1 TTATGTAAG
*
62585016 TTGTGT-A-
1 TTATGTAAG
62585023 TTATGTAAG
1 TTATGTAAG
*
62585032 TTACGTAAG
1 TTATGTAAG
*
62585041 TTATGTAGG
1 TTATGTAAG
*
62585050 CTATGT-A-
1 TTATGTAAG
62585057 TTATGTAAG
1 TTATGTAAG
*
62585066 TTATTTAAG
1 TTATGTAAG
62585075 TTATGTAAG
1 TTATGTAAG
62585084 TTATGTAAG
1 TTATGTAAG
62585093 -TAGTGT-A-
1 TTA-TGTAAG
*
62585100 TTATGAAAG
1 TTATGTAAG
62585109 TTATGTAAG
1 TTATGTAAG
62585118 -TAGTGT-A-
1 TTA-TGTAAG
*
62585125 TTATATAAG
1 TTATGTAAG
*
62585134 TTATAT-A-
1 TTATGTAAG
*
62585141 TTATGAAAG
1 TTATGTAAG
62585150 TTATGTAAG
1 TTATGTAAG
* *
62585159 CTGTGT-A-
1 TTATGTAAG
62585166 TTATGT-A-
1 TTATGTAAG
62585173 TTATGTAAG
1 TTATGTAAG
*
62585182 GTATGTAAG
1 TTATGTAAG
*
62585191 TTGTGT-A-
1 TTATGTAAG
62585198 TTATGT-A-
1 TTATGTAAG
62585205 TTATGTAAG
1 TTATGTAAG
*
62585214 GTATGTAAG
1 TTATGTAAG
*
62585223 TTGTGT-A-
1 TTATGTAAG
62585230 TTATGT-A-
1 TTATGTAAG
62585237 TTATGTAAG
1 TTATGTAAG
*
62585246 TTATGTGAG
1 TTATGTAAG
*
62585255 TTGTGTAAG
1 TTATGTAAG
62585264 TT
1 TT
62585266 GAGTTATGAT
Statistics
Matches: 362, Mismatches: 67, Indels: 74
0.72 0.13 0.15
Matches are distributed among these distances:
7 78 0.22
8 35 0.10
9 240 0.66
10 3 0.01
11 3 0.01
12 3 0.01
ACGTcount: A:0.31, C:0.02, G:0.22, T:0.45
Consensus pattern (9 bp):
TTATGTAAG
Found at i:62584831 original size:34 final size:34
Alignment explanation
Indices: 62584791--62585265 Score: 295
Period size: 34 Copynumber: 13.9 Consensus size: 34
62584781 TATAAATGAC
* *
62584791 TTATGTAAGTTACGTAAGTTATGTAAGTAATGTA
1 TTATGTAAGTTATGTAAGTTATGTAAGTTATGTA
* * *
62584825 TTATGTAAGTTGTGTATAATATTATTTAAGTTATGTAAGTTGTGTA
1 TTATGTAAGTTATG--TAA-GTTATGTAAG---T-T-A--T--GTA
* * * *
62584871 TTATGTAAGTTACGTAAGTTATGTAGGCTATGTT
1 TTATGTAAGTTATGTAAGTTATGTAAGTTATGTA
* * * * *
62584905 TTATGTAAGTTACGTAAGTTATGTAGGCTATATT
1 TTATGTAAGTTATGTAAGTTATGTAAGTTATGTA
* *
62584939 TTATGTAAGTTATTTAAGTTATGTAAGCTATGTA
1 TTATGTAAGTTATGTAAGTTATGTAAGTTATGTA
* *
62584973 TTATGCAAGTTATGTAAG-TAGTGT-A-TTATGAAA
1 TTATGTAAGTTATGTAAGTTA-TGTAAGTTATG-TA
* *
62585006 GTTATGTAAGTTGTGT-A-TTATGTAAGTTACGTAA
1 -TTATGTAAGTTATGTAAGTTATGTAAGTTATGT-A
* * *
62585040 GTTATGTAGGCTATGT-A-TTATGTAAGTTATTTAA
1 -TTATGTAAGTTATGTAAGTTATGTAAGTTATGT-A
*
62585074 GTTATGTAAGTTATGTAAG-TAGTGT-A-TTATGAAA
1 -TTATGTAAGTTATGTAAGTTA-TGTAAGTTATG-TA
* *
62585108 GTTATGTAAG-TAGTGT-A-TTATATAAGTTATATA
1 -TTATGTAAGTTA-TGTAAGTTATGTAAGTTATGTA
* * *
62585141 TTATGAAAGTTATGTAAGCTGTGT-A-TTATGTA
1 TTATGTAAGTTATGTAAGTTATGTAAGTTATGTA
* *
62585173 TTATGTAAGGTATGTAAGTTGTGT-A-TTATGTA
1 TTATGTAAGTTATGTAAGTTATGTAAGTTATGTA
* *
62585205 TTATGTAAGGTATGTAAGTTGTGT-A-TTATGTA
1 TTATGTAAGTTATGTAAGTTATGTAAGTTATGTA
* *
62585237 TTATGTAAGTTATGTGAGTTGTGTAAGTT
1 TTATGTAAGTTATGTAAGTTATGTAAGTT
62585266 GAGTTATGAT
Statistics
Matches: 361, Mismatches: 48, Indels: 64
0.76 0.10 0.14
Matches are distributed among these distances:
32 109 0.30
33 20 0.06
34 183 0.51
35 4 0.01
36 7 0.02
37 8 0.02
38 1 0.00
39 1 0.00
40 1 0.00
42 1 0.00
43 7 0.02
44 4 0.01
46 15 0.04
ACGTcount: A:0.31, C:0.02, G:0.22, T:0.45
Consensus pattern (34 bp):
TTATGTAAGTTATGTAAGTTATGTAAGTTATGTA
Found at i:62584833 original size:25 final size:25
Alignment explanation
Indices: 62584804--62585220 Score: 296
Period size: 25 Copynumber: 16.8 Consensus size: 25
62584794 TGTAAGTTAC
*
62584804 GTAAGTTATGTAAGTAATGTATTAT
1 GTAAGTTATGTAAGTTATGTATTAT
* *
62584829 GTAAGTTGTGT-A--TA-ATATTAT
1 GTAAGTTATGTAAGTTATGTATTAT
* *
62584850 TTAAGTTATGTAAGTTGTGTATTAT
1 GTAAGTTATGTAAGTTATGTATTAT
* *
62584875 GTAAGTTACGTAAGTTATGTAGGCTAT
1 GTAAGTTATGTAAGTTATGTA--TTAT
* *
62584902 GT--TTTATGTAAGTTACGTAAGTTAT
1 GTAAGTTATGTAAGTTATGT-A-TTAT
* * **
62584927 GTAGGCTA--TATTTTATGTAAGTTAT
1 GTAAGTTATGTAAGTTATGT-A-TTAT
* *
62584952 TTAAGTTATGTAAGCTATGTATTAT
1 GTAAGTTATGTAAGTTATGTATTAT
*
62584977 GCAAGTTATGTAAG-TAGTGTATTAT
1 GTAAGTTATGTAAGTTA-TGTATTAT
* *
62585002 GAAAGTTATGTAAGTTGTGTATTAT
1 GTAAGTTATGTAAGTTATGTATTAT
* *
62585027 GTAAGTTACGTAAGTTATGTAGGCTAT
1 GTAAGTTATGTAAGTTATGTA--TTAT
*
62585054 GT-A-TTATGTAAGTTATTTAAGTTAT
1 GTAAGTTATGTAAGTTATGT-A-TTAT
62585079 GTAAGTTATGTAAG-TAGTGTATTAT
1 GTAAGTTATGTAAGTTA-TGTATTAT
*
62585104 GAAAGTTATGTAAG-TAGTGTATTAT
1 GTAAGTTATGTAAGTTA-TGTATTAT
* * *
62585129 ATAAGTTATAT-A-TTATGAAAGTTAT
1 GTAAGTTATGTAAGTTATG-TA-TTAT
* *
62585154 GTAAGCTGTGT-A-TTATGTATTAT
1 GTAAGTTATGTAAGTTATGTATTAT
* *
62585177 GTAAGGTATGTAAGTTGTGTATTAT
1 GTAAGTTATGTAAGTTATGTATTAT
*
62585202 GT-A-TTATGTAAGGTATGTA
1 GTAAGTTATGTAAGTTATGTA
62585221 AGTTGTGTAT
Statistics
Matches: 314, Mismatches: 54, Indels: 50
0.75 0.13 0.12
Matches are distributed among these distances:
21 15 0.05
22 2 0.01
23 28 0.09
24 11 0.04
25 219 0.70
26 9 0.03
27 30 0.10
ACGTcount: A:0.32, C:0.02, G:0.22, T:0.45
Consensus pattern (25 bp):
GTAAGTTATGTAAGTTATGTATTAT
Found at i:62585174 original size:7 final size:7
Alignment explanation
Indices: 62585162--62585243 Score: 56
Period size: 7 Copynumber: 10.6 Consensus size: 7
62585152 ATGTAAGCTG
62585162 TGTATTA
1 TGTATTA
62585169 TGTATTA
1 TGTATTA
*
62585176 TGTAAGGTA
1 TGT-A-TTA
*
62585185 TGTAAGTTG
1 TGT-A-TTA
62585194 TGTATTA
1 TGTATTA
62585201 TGTATTA
1 TGTATTA
*
62585208 TGTAAGGTA
1 TGT-A-TTA
*
62585217 TGTAAGTTG
1 TGT-A-TTA
62585226 TGTATTA
1 TGTATTA
62585233 TGTATTA
1 TGTATTA
62585240 TGTA
1 TGTA
62585244 AGTTATGTGA
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
7 35 0.56
8 4 0.06
9 24 0.38
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.49
Consensus pattern (7 bp):
TGTATTA
Found at i:62585273 original size:32 final size:32
Alignment explanation
Indices: 62584994--62585261 Score: 230
Period size: 32 Copynumber: 7.9 Consensus size: 32
62584984 ATGTAAGTAG
* *
62584994 TGTATTATGAAAGTTATGTAAGTTGTGTATTA
1 TGTATTATGTAAGGTATGTAAGTTGTGTATTA
* * * * *
62585026 TGTAAGTTACGTAAGTTATGTAGGCTATGTATTA
1 TGT-A-TTATGTAAGGTATGTAAGTTGTGTATTA
* * * *
62585060 TGTAAGTTATTTAAGTTATGTAAGTTATGTAAGTA
1 TGT-A-TTATGTAAGGTATGTAAGTTGTGT-ATTA
* * *
62585095 GTGTATTATGAAAGTTATGTAAGTAGTGTATTATA
1 -TGTATTATGTAAGGTATGTAAGTTGTGTA-T-TA
* * *
62585130 TAAGTTATATATTATGAAAGTTATGTAAGCTGTGTATTA
1 T--G-----TATTATGTAAGGTATGTAAGTTGTGTATTA
62585169 TGTATTATGTAAGGTATGTAAGTTGTGTATTA
1 TGTATTATGTAAGGTATGTAAGTTGTGTATTA
62585201 TGTATTATGTAAGGTATGTAAGTTGTGTATTA
1 TGTATTATGTAAGGTATGTAAGTTGTGTATTA
* *
62585233 TGTATTATGTAAGTTATGTGAGTTGTGTA
1 TGTATTATGTAAGGTATGTAAGTTGTGTA
62585262 AGTTGAGTTA
Statistics
Matches: 201, Mismatches: 22, Indels: 26
0.81 0.09 0.10
Matches are distributed among these distances:
32 89 0.44
33 2 0.01
34 70 0.35
35 6 0.03
36 4 0.02
37 1 0.00
39 3 0.01
40 1 0.00
41 25 0.12
ACGTcount: A:0.31, C:0.01, G:0.23, T:0.45
Consensus pattern (32 bp):
TGTATTATGTAAGGTATGTAAGTTGTGTATTA
Found at i:62585556 original size:121 final size:121
Alignment explanation
Indices: 62585418--62585912 Score: 660
Period size: 121 Copynumber: 4.1 Consensus size: 121
62585408 TACACATAAA
* *
62585418 ATAGGTAATATAT-CCATACTAATATAGGTGATATATTAAAAATATAGATTT-TA-ATATTTAAA
1 ATAGGTTATAT-TCCCATACTAATATAGGTGATATATTAAAAATATAG-TTTAAACATATTT-AA
* * *
62585480 AATATAAAATAAATAATTATGTTTAAAATTTAAAAAGTTATTAGTAATGAATTTGAAAT
63 AATATAAAATAAATAAATATGTTTAAAATTTAAAAAGTAATTAGTAATGAATCTGAAAT
* *
62585539 ATAGGTTATATTCCCATACTAATATAGGTGATAGATTAAAAATATAGGTTT-TA-ATATTTAAAA
1 ATAGGTTATATTCCCATACTAATATAGGTGATATATTAAAAATATA-GTTTAAACATATTT-AAA
* ** *
62585602 ATATAAAATAAATAATTATGTTTAAAATTTAAAAAGTTGTTAGTAATGAATTTGAAAT
64 ATATAAAATAAATAAATATGTTTAAAATTTAAAAAGTAATTAGTAATGAATCTGAAAT
* * *
62585660 ATAGGTTATATTCCCATACTAATATAGGTTATATATTAACAATAAAGTTTAAACATATTTAAAAT
1 ATAGGTTATATTCCCATACTAATATAGGTGATATATTAAAAATATAGTTTAAACATATTTAAAAT
* ** * *
62585725 ATAATATTTATAAATATTTTTAAAATTTAAAAAATAATTAGTAATGAATCTGAAAT
66 ATAAAATAAATAAATATGTTTAAAATTTAAAAAGTAATTAGTAATGAATCTGAAAT
* *
62585781 ATAGGTTATATTCCCATACTAATATAGGTTATATATTAACAATATAGTTTAAACATATTTAAAAT
1 ATAGGTTATATTCCCATACTAATATAGGTGATATATTAAAAATATAGTTTAAACATATTTAAAAT
* * * * *
62585846 ATACTAGT-TATAAATATTTTTAAAAATTAAAAAGTAATTAGTAATGAATCTGAAAT
66 ATA-AAATAAATAAATATGTTTAAAATTTAAAAAGTAATTAGTAATGAATCTGAAAT
62585902 ATAGGTTATAT
1 ATAGGTTATAT
62585913 ATTTGATTAA
Statistics
Matches: 346, Mismatches: 23, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
120 5 0.01
121 333 0.96
122 8 0.02
ACGTcount: A:0.47, C:0.04, G:0.09, T:0.39
Consensus pattern (121 bp):
ATAGGTTATATTCCCATACTAATATAGGTGATATATTAAAAATATAGTTTAAACATATTTAAAAT
ATAAAATAAATAAATATGTTTAAAATTTAAAAAGTAATTAGTAATGAATCTGAAAT
Found at i:62585728 original size:24 final size:25
Alignment explanation
Indices: 62585701--62585755 Score: 58
Period size: 26 Copynumber: 2.2 Consensus size: 25
62585691 TATATTAACA
62585701 ATAAAGTT-TAAACATATTTAAAAT
1 ATAAAGTTATAAACATATTTAAAAT
* * *
62585725 ATAATATTTATAAATATTTTTAAAAT
1 ATAA-AGTTATAAACATATTTAAAAT
*
62585751 TTAAA
1 ATAAA
62585756 AAATAATTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 4 0.16
25 4 0.16
26 17 0.68
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (25 bp):
ATAAAGTTATAAACATATTTAAAAT
Found at i:62588894 original size:14 final size:14
Alignment explanation
Indices: 62588871--62588920 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
62588861 ACCCCCAACA
*
62588871 CCTAAACCTTAAAC
1 CCTAACCCTTAAAC
62588885 CCTAACCCTTAAAC
1 CCTAACCCTTAAAC
* * *
62588899 CATAATCCTAAAAC
1 CCTAACCCTTAAAC
62588913 CCTTAACC
1 CC-TAACC
62588921 TATATTCGTT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
14 25 0.86
15 4 0.14
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.22
Consensus pattern (14 bp):
CCTAACCCTTAAAC
Found at i:62588897 original size:21 final size:20
Alignment explanation
Indices: 62588849--62588899 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
62588839 AACCTTAAAC
* * *
62588849 CCCTAACCCTTAACCCCCAA
1 CCCTAAACCTTAAACCCTAA
62588869 CACCTAAACCTTAAACCCTAA
1 C-CCTAAACCTTAAACCCTAA
62588890 CCCTTAAACC
1 CCC-TAAACC
62588900 ATAATCCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.35, C:0.47, G:0.00, T:0.18
Consensus pattern (20 bp):
CCCTAAACCTTAAACCCTAA
Found at i:62589316 original size:113 final size:111
Alignment explanation
Indices: 62589115--62589839 Score: 528
Period size: 114 Copynumber: 6.5 Consensus size: 111
62589105 TGGTGTTTTC
* * * * * * *
62589115 AAAAATCGCCGCTAATGCTTGACTTTTACGGCGCTTTTTGTAAAA-CGCCGCTAATGACTGT-AA
1 AAAAAGCGCCGCTAATGCTTGACTTCTGCGGCG-TTTTTATAAAAGCGCCACTAATGTCTCTAAA
* * * * *
62589178 CGCTCAACAAAAAATGAAGCCGTTTGCTTAAAATTTTTGCAGCGCTTCTA
65 C-CTCAACAAAAAA--ACGTCGTTTGCTTAAAACTTTTGCGGCGCTTCTG
* *
62589228 AAAAAGCGCCGCTAATACTTGACTTCTGCGGCGTTTTTATAAAAGCGCCACTAATGTCTGTAAAC
1 AAAAAGCGCCGCTAATGCTTGACTTCTGCGGCGTTTTTATAAAAGCGCCACTAATGTCTCTAAAC
* * * *
62589293 CTCAACAAAAAACATTGTTGTTTGCTTATAAACTTTTGCGGTGCTACTG
66 CTCAACAAAAAA-A-CGTCGTTTGCTTA-AAACTTTTGCGGCGCTTCTG
** * * * * * ** *
62589342 TGAAAGCGCGGCTAATTCCTGACTTTTGCGGTGTTTTTAGGAAAGCGCCACTAATGTCTCTAAAA
1 AAAAAGCGCCGCTAATGCTTGACTTCTGCGGCGTTTTTATAAAAGCGCCACTAATGTCTCTAAAC
* * * * * * *
62589407 CTGAAAAAACAAACGACGTCGTTTGCTTGAAACTTATGTGGGGCTTTTG
66 CTCAACAAA-AAA--ACGTCGTTTGCTTAAAACTTTTGCGGCGCTTCTG
* * * *
62589456 AAAAAGTGCTGCTAATGAC-TGACTTCTGCGGCGTTTTTCA-AAAAGCGCCACTACTGTCTGTAA
1 AAAAAGCGCCGCTAATG-CTTGACTTCTGCGGCGTTTTT-ATAAAAGCGCCACTAATGTCTCTAA
* * * * **
62589519 AGCTCAACAAAAATGACGTCGTTTGCTTAGAAACTTTTGTGGCACTAATG
64 ACCTCAACAAAAA-AACGTCGTTTGCTTA-AAACTTTTGCGGCGCTTCTG
* * * * * *
62589569 AGAAGGCACCGCTAATGCTTGACTTCTGCGGCGTTTTT-TGGAAAGCCCCACTAATGTGTCTAAA
1 AAAAAGCGCCGCTAATGCTTGACTTCTGCGGCGTTTTTAT-AAAAGCGCCACTAATGTCTCTAAA
* * * **
62589633 CCTCAACAAAAAAAATGACATTGTTTG-TTAAAACCTTT---GCG-AAC--
65 CCTCAAC--AAAAAA--ACGTCGTTTGCTTAAAACTTTTGCGGCGCTTCTG
* * * * *
62589677 -AAAAGTGTCGCTAATGCTTGACTTCTGCGGCATTTTT-TGGAAAGCGCCACTAATGTGTCTAAA
1 AAAAAGCGCCGCTAATGCTTGACTTCTGCGGCGTTTTTAT-AAAAGCGCCACTAATGTCTCTAAA
* * *
62589740 CCTCAACAAAAAAACGTCGTTTG-TTAAAACCTTTGCAGCGCTTTTG
65 CCTCAACAAAAAAACGTCGTTTGCTTAAAACTTTTGCGGCGCTTCTG
* * * * *
62589786 AGAAAGCGTCGCTAATGCTTGACTTTTGCGGC-TTTTATTTAGAAGCGCCACTAA
1 AAAAAGCGCCGCTAATGCTTGACTTCTGCGGCGTTTT-TATAAAAGCGCCACTAA
62589840 GGTATTTGAG
Statistics
Matches: 493, Mismatches: 93, Indels: 55
0.77 0.15 0.09
Matches are distributed among these distances:
103 19 0.04
105 6 0.01
106 3 0.01
107 63 0.13
109 4 0.01
110 42 0.09
111 3 0.01
112 25 0.05
113 138 0.28
114 158 0.32
115 23 0.05
116 9 0.02
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (111 bp):
AAAAAGCGCCGCTAATGCTTGACTTCTGCGGCGTTTTTATAAAAGCGCCACTAATGTCTCTAAAC
CTCAACAAAAAAACGTCGTTTGCTTAAAACTTTTGCGGCGCTTCTG
Found at i:62594747 original size:9 final size:9
Alignment explanation
Indices: 62594718--62594754 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
62594708 TGAGTTTTTG
62594718 AATTCGAAT
1 AATTCGAAT
*
62594727 AACTCGAAT
1 AATTCGAAT
62594736 AATTCGAAT
1 AATTCGAAT
*
62594745 AATTTGAAT
1 AATTCGAAT
62594754 A
1 A
62594755 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:62595001 original size:30 final size:31
Alignment explanation
Indices: 62594967--62595026 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
62594957 AAACATTTTA
*
62594967 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAAATTTTACTCCCTTCCCAC
* *
62594997 TTTTCCCCTAAAAATTTTATTCCCTTCCCA
1 TTTTCCCCCAAAAATTTTACTCCCTTCCCA
62595027 TCTCACCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.22, C:0.38, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAAATTTTACTCCCTTCCCAC
Found at i:62595683 original size:5 final size:5
Alignment explanation
Indices: 62595673--62595698 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
62595663 GAACAAATAT
62595673 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
62595699 ATTCTATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:62598937 original size:109 final size:110
Alignment explanation
Indices: 62598780--62599175 Score: 546
Period size: 109 Copynumber: 3.7 Consensus size: 110
62598770 ATATTTGGCA
* * *
62598780 ATTTGGTTAAACGAG--AAATCAAAACCCAGTACCTTAGGGCACG-TTCCTCGAATTTCCAAACG
1 ATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCACGTTTCCTCGAATTTCCAAACG
62598842 CAAAACATTGCCTTATTTTGTAATTTTTGAAAAGGATATTAAGCC
66 CAAAACATTGCCTTATTTTGTAATTTTTGAAAAGGATATTAAGCC
* *
62598887 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACG-TTCCTCGAATTTCCAAACA
1 ATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCACGTTTCCTCGAATTTCCAAACG
* *
62598951 CAGAACATTGCCTTATTTTGAAATTTTTGAAAAGGATATTAAGCC
66 CAAAACATTGCCTTATTTTGTAATTTTTGAAAAGGATATTAAGCC
* * * * * *
62598996 ATTTGGTTGAACGAGAAAAATCAACACCCAACACTTTAGGACATGTTTTCTCGAATTTCTAAACG
1 ATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCACGTTTCCTCGAATTTCCAAACG
*
62599061 CAGAACATTGCC------T-T-ATTTTTGAAAAGGATATTAAGCC
66 CAAAACATTGCCTTATTTTGTAATTTTTGAAAAGGATATTAAGCC
* *
62599098 ATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
1 ATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCACGTTTCCTCGAATTTCCAAACG
* *
62599163 CCAAATATTGCCT
66 CAAAACATTGCCT
62599176 CAATTAGAAA
Statistics
Matches: 262, Mismatches: 23, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
102 93 0.35
104 1 0.00
107 14 0.05
109 126 0.48
110 28 0.11
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (110 bp):
ATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCACGTTTCCTCGAATTTCCAAACG
CAAAACATTGCCTTATTTTGTAATTTTTGAAAAGGATATTAAGCC
Found at i:62599258 original size:21 final size:20
Alignment explanation
Indices: 62599226--62599267 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
62599216 ATTTATATGC
*
62599226 ATGATGGAATAATAAACATG
1 ATGATGGAATAAAAAACATG
*
62599246 ATGATGTGAATAAAAAATATG
1 ATGATG-GAATAAAAAACATG
62599267 A
1 A
62599268 ACAAAAACGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.52, C:0.02, G:0.19, T:0.26
Consensus pattern (20 bp):
ATGATGGAATAAAAAACATG
Found at i:62599497 original size:26 final size:26
Alignment explanation
Indices: 62599446--62599501 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
62599436 TATATGTATG
* *
62599446 TATATAAAATTATGAAAATGTGAAAA
1 TATATAAAATTATGAAAATATAAAAA
*
62599472 TATATATAAATTAT-AAGATATAAAAA
1 TATATA-AAATTATGAAAATATAAAAA
62599498 TATA
1 TATA
62599502 AGTATGTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (26 bp):
TATATAAAATTATGAAAATATAAAAA
Found at i:62601769 original size:132 final size:132
Alignment explanation
Indices: 62601624--62602151 Score: 921
Period size: 132 Copynumber: 4.0 Consensus size: 132
62601614 CTTCTGTCTG
62601624 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * * * *
62601689 TAAGATTCACCATCTTCAATCTACTCCACTACTGCTTAGGGTAACAGAATCTACAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTCAACC
62601754 TA
131 TA
*
62601756 CTCCAATACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * * *
62601821 TAAGATTCACCATCTTTGATCTGCTCCACTACTGATTAGGGTGACGGAATCTGCGATCTTCGACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTCAACC
62601886 TA
131 TA
*
62601888 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* *
62601953 TAAGATTCACCATCTTTGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTCGACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTCAACC
62602018 TA
131 TA
* *
62602020 CTCCACTACTGTTTAGGGTGATAGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
62602085 TAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTCAACC
62602150 TA
131 TA
62602152 TTTCACTGCC
Statistics
Matches: 377, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 377 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (132 bp):
CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
TAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTCAACC
TA
Found at i:62602027 original size:44 final size:44
Alignment explanation
Indices: 62601844--62602040 Score: 134
Period size: 44 Copynumber: 4.5 Consensus size: 44
62601834 CTTTGATCTG
* *
62601844 CTCCACTACTGATTAGGGTGACGGAATCTGCGATCTTCGACCTA
1 CTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTCGACCTA
* * * ** *
62601888 CTCCACTACTGCTTAGGGTGATAGGA-CT--AATGGCTTAAATCTA
1 CTCCACTACTGATTAGGGTGACAGAATCTGCAAT--CTTCGACCTA
* * * * * * * * * * *
62601931 CTTCTCCACTGTATT-GGGAAGATAAGATTC-ACCATCTTTGATCTG
1 CTCCACTACTG-ATTAGGG-TGA-CAGAATCTGCAATCTTCGACCTA
62601976 CTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTCGACCTA
1 CTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTCGACCTA
*
62602020 CTCCACTACTGTTTAGGGTGA
1 CTCCACTACTGATTAGGGTGA
62602041 TAGGACAAAT
Statistics
Matches: 111, Mismatches: 32, Indels: 20
0.68 0.20 0.12
Matches are distributed among these distances:
41 2 0.02
43 25 0.23
44 61 0.55
45 20 0.18
46 1 0.01
47 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.30
Consensus pattern (44 bp):
CTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTCGACCTA
Found at i:62604219 original size:6 final size:6
Alignment explanation
Indices: 62604208--62604251 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
62604198 TTGACCTCTC
* *
62604208 CTTTTT CTTTTT CTTTTT ATTTCT -TTTTT CTTTTTT CTTTTT CT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT C-TTTTT CTTTTT CT
62604252 CCTATTTTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
5 4 0.12
6 23 0.70
7 6 0.18
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (6 bp):
CTTTTT
Found at i:62604225 original size:7 final size:7
Alignment explanation
Indices: 62604209--62604249 Score: 55
Period size: 7 Copynumber: 5.6 Consensus size: 7
62604199 TGACCTCTCC
62604209 TTTTTCT
1 TTTTTCT
*
62604216 TTTTCTTT
1 TTTT-TCT
62604224 TTATTTCT
1 TT-TTTCT
62604232 TTTTTCT
1 TTTTTCT
62604239 TTTTTCT
1 TTTTTCT
62604246 TTTT
1 TTTT
62604250 CTCCTATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 20 0.67
8 8 0.27
9 2 0.07
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTCT
Found at i:62604259 original size:23 final size:21
Alignment explanation
Indices: 62604204--62604259 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 21
62604194 CGCCTTGACC
62604204 TCTCCTTTTTCTTTTTCTTTTT
1 TCTCCTTTTTCTTTTTC-TTTT
* *
62604226 ATTTCTTTTTTCTTTTTTCTTTT
1 -TCTCCTTTTTC-TTTTTCTTTT
62604249 TCTCCTATTTT
1 TCTCCT-TTTT
62604260 TGACTTTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
22 4 0.15
23 17 0.63
24 6 0.22
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.77
Consensus pattern (21 bp):
TCTCCTTTTTCTTTTTCTTTT
Found at i:62604259 original size:24 final size:23
Alignment explanation
Indices: 62604205--62604260 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
62604195 GCCTTGACCT
62604205 CTCC-TTTTTCTTTTTCTTTTTA
1 CTCCTTTTTTCTTTTTCTTTTTA
* *
62604227 TTTCTTTTTTCTTTTTTCTTTTT-
1 CTCCTTTTTTC-TTTTTCTTTTTA
62604250 CTCCTATTTTT
1 CTCCT-TTTTT
62604261 GACTTTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
22 2 0.07
23 9 0.33
24 16 0.59
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.77
Consensus pattern (23 bp):
CTCCTTTTTTCTTTTTCTTTTTA
Done.