Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 210 of 226
Found at i:62604295 original size:36 final size:35
Alignment explanation
Indices: 62604256--62604325 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 35
62604246 TTTTCTCCTA
62604256 TTTTTGACTTTTATT-TTTTGATTGATTTTTTTTTGAT
1 TTTTTGA-TTTT-TTATTTT-ATTGATTTTTTTTTGAT
*
62604293 TTTTTGATTTTTTGATTTTTTTGATTTTTTTTT
1 TTTTTGATTTTTT-ATTTTATTGATTTTTTTTT
62604326 AGTCTGAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
35 2 0.07
36 17 0.57
37 11 0.37
ACGTcount: A:0.11, C:0.01, G:0.10, T:0.77
Consensus pattern (35 bp):
TTTTTGATTTTTTATTTTATTGATTTTTTTTTGAT
Found at i:62604297 original size:8 final size:8
Alignment explanation
Indices: 62604264--62604322 Score: 70
Period size: 8 Copynumber: 7.5 Consensus size: 8
62604254 TATTTTTGAC
62604264 TTTT-ATT
1 TTTTGATT
62604271 TTTTGATT
1 TTTTGATT
*
62604279 GATTT--TT
1 -TTTTGATT
62604286 TTTTGATT
1 TTTTGATT
62604294 TTTTGATT
1 TTTTGATT
62604302 TTTTGATTT
1 TTTTGA-TT
62604311 TTTTGATT
1 TTTTGATT
62604319 TTTT
1 TTTT
62604323 TTTAGTCTGA
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
6 3 0.07
7 6 0.13
8 25 0.56
9 11 0.24
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78
Consensus pattern (8 bp):
TTTTGATT
Found at i:62604320 original size:16 final size:16
Alignment explanation
Indices: 62604264--62604322 Score: 70
Period size: 17 Copynumber: 3.8 Consensus size: 16
62604254 TATTTTTGAC
62604264 TTTT-ATTTTTTGATT
1 TTTTGATTTTTTGATT
*
62604279 GATTT--TTTTTTGATT
1 -TTTTGATTTTTTGATT
62604294 TTTTGATTTTTTGATTT
1 TTTTGATTTTTTGA-TT
62604311 TTTTGATTTTTT
1 TTTTGATTTTTT
62604323 TTTAGTCTGA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
14 3 0.08
15 10 0.26
16 11 0.29
17 14 0.37
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78
Consensus pattern (16 bp):
TTTTGATTTTTTGATT
Found at i:62605601 original size:19 final size:20
Alignment explanation
Indices: 62605572--62605620 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
62605562 CACTTCGTGA
* *
62605572 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
62605591 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
62605611 AAATG-AATGC
1 AAATGTAATGC
62605621 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:62607169 original size:109 final size:110
Alignment explanation
Indices: 62606989--62607372 Score: 580
Period size: 109 Copynumber: 3.6 Consensus size: 110
62606979 ATATTTGGCA
*
62606989 ATTTGGTTAAACGAG--AAATCGAA-ACCCAGCACCTTAGGGCACG-TTCCTCGAATTTCCAAAC
1 ATTTGGTTGAACGAGAAAAATC-AACACCCAGCACCTTAGGGCACGTTTCCTCGAATTTCCAAAC
62607050 GCA-AAGCATTGCCTTATTTTGTAATTTTTGAAAAGGATATTAAGCC
65 GCAGAA-CATTGCCTTATTTTGTAATTTTTGAAAAGGATATTAAGCC
*
62607096 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACG-TTCCTCGAATTTCCAAACG
1 ATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCACGTTTCCTCGAATTTCCAAACG
*
62607160 CAGAACATTGCCTTATTTTGAAATTTTTGAAAAGGATATTAAGCC
66 CAGAACATTGCCTTATTTTGTAATTTTTGAAAAGGATATTAAGCC
* *
62607205 ATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
1 ATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCACGTTTCCTCGAATTTCCAAACG
*
62607270 CAGAACATTGCC------T-T-ATTTTTGAAAAGGAGATTAAGCC
66 CAGAACATTGCCTTATTTTGTAATTTTTGAAAAGGATATTAAGCC
* *
62607307 ATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
1 ATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCACGTTTCCTCGAATTTCCAAACG
62607372 C
66 C
62607373 CAAATATTGC
Statistics
Matches: 264, Mismatches: 8, Indels: 15
0.92 0.03 0.05
Matches are distributed among these distances:
102 88 0.33
104 1 0.00
107 14 0.05
108 1 0.00
109 128 0.48
110 32 0.12
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (110 bp):
ATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCACGTTTCCTCGAATTTCCAAACG
CAGAACATTGCCTTATTTTGTAATTTTTGAAAAGGATATTAAGCC
Found at i:62607384 original size:102 final size:102
Alignment explanation
Indices: 62607182--62607372 Score: 373
Period size: 102 Copynumber: 1.9 Consensus size: 102
62607172 TTATTTTGAA
*
62607182 ATTTTTGAAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGC
1 ATTTTTGAAAAGGAGATTAAGCCATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGC
62607247 ATGTTTTCTCGAATTTCCAAACGCAGAACATTGCCTT
66 ATGTTTTCTCGAATTTCCAAACGCAGAACATTGCCTT
62607284 ATTTTTGAAAAGGAGATTAAGCCATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGC
1 ATTTTTGAAAAGGAGATTAAGCCATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGC
62607349 ATGTTTTCTCGAATTTCCAAACGC
66 ATGTTTTCTCGAATTTCCAAACGC
62607373 CAAATATTGC
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 88 1.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (102 bp):
ATTTTTGAAAAGGAGATTAAGCCATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGC
ATGTTTTCTCGAATTTCCAAACGCAGAACATTGCCTT
Found at i:62607465 original size:21 final size:20
Alignment explanation
Indices: 62607433--62607474 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
62607423 ATTTATATGC
*
62607433 ATGATGGAATAATAAACATG
1 ATGATGGAATAAAAAACATG
*
62607453 ATGATGTGAATAAAAAATATG
1 ATGATG-GAATAAAAAACATG
62607474 A
1 A
62607475 ACAAAAACGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.52, C:0.02, G:0.19, T:0.26
Consensus pattern (20 bp):
ATGATGGAATAAAAAACATG
Found at i:62620267 original size:25 final size:25
Alignment explanation
Indices: 62620231--62620278 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
62620221 ATAAAAATGT
*
62620231 TACAGATCACAGTGTT-TCAGAATA
1 TACAGATCACAGAGTTCTCAGAATA
62620255 TACAGAATCACAGAGTTCTCAGAA
1 TACAG-ATCACAGAGTTCTCAGAA
62620279 CGTATATGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.24
25 10 0.48
26 6 0.29
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.25
Consensus pattern (25 bp):
TACAGATCACAGAGTTCTCAGAATA
Found at i:62620447 original size:22 final size:22
Alignment explanation
Indices: 62620421--62620465 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
62620411 AATAGTAAAT
62620421 ATTTGCAGATAAACTACCAGTA
1 ATTTGCAGATAAACTACCAGTA
* * *
62620443 ATTTGCGGTTAAACTGCCAGTA
1 ATTTGCAGATAAACTACCAGTA
62620465 A
1 A
62620466 AAAGTTTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (22 bp):
ATTTGCAGATAAACTACCAGTA
Found at i:62620590 original size:29 final size:29
Alignment explanation
Indices: 62620524--62620592 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 29
62620514 CGGCTATACT
* * **
62620524 GCCAGAACTCCGATATTTGCAGATTGACC
1 GCCAAAACTCCCATATTTGCAGATAAACC
* *
62620553 ACCAAAACTCCCATATTTGTAGATAAACC
1 GCCAAAACTCCCATATTTGCAGATAAACC
*
62620582 GCCATAACTCC
1 GCCAAAACTCC
62620593 ACAGAACTCC
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.33, C:0.30, G:0.13, T:0.23
Consensus pattern (29 bp):
GCCAAAACTCCCATATTTGCAGATAAACC
Found at i:62626415 original size:40 final size:38
Alignment explanation
Indices: 62626351--62626425 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 38
62626341 GATTGATTGA
* *
62626351 TATTGTTTATTGTTTGCTGTAAAAGCATGTCACTGTTT
1 TATTGTTTATTGGTTGCTGTAAAAGCATGACACTGTTT
62626389 TATTGTATATATTGGTTGCATG-AAAAGCATGACACTG
1 TATTGT-T-TATTGGTTGC-TGTAAAAGCATGACACTG
62626426 ATATTGATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
38 6 0.19
39 1 0.03
40 23 0.72
41 2 0.06
ACGTcount: A:0.27, C:0.11, G:0.20, T:0.43
Consensus pattern (38 bp):
TATTGTTTATTGGTTGCTGTAAAAGCATGACACTGTTT
Found at i:62626431 original size:38 final size:36
Alignment explanation
Indices: 62626348--62626431 Score: 89
Period size: 40 Copynumber: 2.2 Consensus size: 36
62626338 ATTGATTGAT
* *
62626348 TGATATTGTTTATTGTTTGCTGTAAAAGCATGTCAC
1 TGATATTGTTTATTGGTTGCTGTAAAAGCATGACAC
*
62626384 TGTTTTATTGTATATATTGGTTGCATG-AAAAGCATGACAC
1 TG--ATATTGT-T-TATTGGTTGC-TGTAAAAGCATGACAC
62626424 TGATATTG
1 TGATATTG
62626432 ATAAACTGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
36 2 0.05
38 11 0.28
39 1 0.03
40 23 0.59
41 2 0.05
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.43
Consensus pattern (36 bp):
TGATATTGTTTATTGGTTGCTGTAAAAGCATGACAC
Found at i:62628716 original size:5 final size:5
Alignment explanation
Indices: 62628706--62628731 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
62628696 TTTCTTTAGG
62628706 AGAAA AGAAA AGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA A
62628732 TCCGGTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:62629087 original size:61 final size:61
Alignment explanation
Indices: 62628985--62629101 Score: 198
Period size: 61 Copynumber: 1.9 Consensus size: 61
62628975 CAAGTAGGAG
* *
62628985 AGAAGTTTGAAAAACTAGATCGACTACGATCAAAGGTACGTCAATGATTAAAATCTCTTTT
1 AGAAGTTTGAAAAACTAGATCGACAACGATCAAAGGCACGTCAATGATTAAAATCTCTTTT
* *
62629046 AGAAGTTTGAAAAACTAGATCGACAACGATCAGAGGCACGTCAATGATTAGAATCT
1 AGAAGTTTGAAAAACTAGATCGACAACGATCAAAGGCACGTCAATGATTAAAATCT
62629102 ATTTCAAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 52 1.00
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (61 bp):
AGAAGTTTGAAAAACTAGATCGACAACGATCAAAGGCACGTCAATGATTAAAATCTCTTTT
Found at i:62629121 original size:52 final size:52
Alignment explanation
Indices: 62629051--62629261 Score: 255
Period size: 52 Copynumber: 4.1 Consensus size: 52
62629041 CTTTTAGAAG
* *
62629051 TTTGAAAAACTAGATCGACAACGATCAGAGGCACGTCAATGATTAGAATCTA
1 TTTGAAAAACTAGATCGACAACGATCAGAAGCACGCCAATGATTAGAATCTA
* * * * **
62629103 TTTCAAAAACTAGGTCGACAACGATCAAAAGTACGTTAAT-AGTTAGAATCTA
1 TTTGAAAAACTAGATCGACAACGATCAGAAGCACGCCAATGA-TTAGAATCTA
*
62629155 TTTGAAAAACTAGATCGACAATGATCAGAAGCACGCCAATGATTAGAATCTA
1 TTTGAAAAACTAGATCGACAACGATCAGAAGCACGCCAATGATTAGAATCTA
* * * * * *
62629207 TTTGGAAAACTAGATCGACGATC-ACCAGAGGTATGCCAATGATTAGAATCTA
1 TTTGAAAAACTAGATCGAC-AACGATCAGAAGCACGCCAATGATTAGAATCTA
62629259 TTT
1 TTT
62629262 ACCAAGTTTG
Statistics
Matches: 136, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
51 1 0.01
52 133 0.98
53 2 0.01
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.26
Consensus pattern (52 bp):
TTTGAAAAACTAGATCGACAACGATCAGAAGCACGCCAATGATTAGAATCTA
Found at i:62637116 original size:26 final size:26
Alignment explanation
Indices: 62637086--62637145 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
62637076 AATCAAATCT
62637086 AAATTTAAAACCACAAACCAAAA-CCC
1 AAATTTAAAACC-CAAACCAAAATCCC
* * **
62637112 TAATTTGAAACCCAAGTCAAAATCCC
1 AAATTTAAAACCCAAACCAAAATCCC
62637138 AAATTTAA
1 AAATTTAA
62637146 GGCTTTCAAC
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
25 8 0.30
26 19 0.70
ACGTcount: A:0.52, C:0.25, G:0.03, T:0.20
Consensus pattern (26 bp):
AAATTTAAAACCCAAACCAAAATCCC
Found at i:62642247 original size:28 final size:28
Alignment explanation
Indices: 62642207--62642268 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
62642197 GCTTCTATAA
* *
62642207 ATGGTCAGCTCTGTCGCCTGAATGATAT
1 ATGGTCAGCTCTGCCGCCTGAATAATAT
62642235 ATGGTCAGCTCTGCCGCCTGAATAATAT
1 ATGGTCAGCTCTGCCGCCTGAATAATAT
62642263 ATGGTC
1 ATGGTC
62642269 GGCCCTATCG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.31
Consensus pattern (28 bp):
ATGGTCAGCTCTGCCGCCTGAATAATAT
Found at i:62642280 original size:28 final size:28
Alignment explanation
Indices: 62642207--62642281 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 28
62642197 GCTTCTATAA
* * *
62642207 ATGGTCAGCTCTGTCGCCTGAATGATAT
1 ATGGTCAGCCCTATCGCCTGAATAATAT
* **
62642235 ATGGTCAGCTCTGCCGCCTGAATAATAT
1 ATGGTCAGCCCTATCGCCTGAATAATAT
*
62642263 ATGGTCGGCCCTATCGCCT
1 ATGGTCAGCCCTATCGCCT
62642282 TTGTATTATA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.20, C:0.27, G:0.24, T:0.29
Consensus pattern (28 bp):
ATGGTCAGCCCTATCGCCTGAATAATAT
Found at i:62643104 original size:14 final size:14
Alignment explanation
Indices: 62643068--62643103 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
62643058 TGAAAAAATA
62643068 TTTTACAAAAGTGC
1 TTTTACAAAAGTGC
62643082 -TTTACAAAAGTGC
1 TTTTACAAAAGTGC
62643095 TTTTA-AAAA
1 TTTTACAAAA
62643104 ATTTGATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 17 0.81
14 4 0.19
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (14 bp):
TTTTACAAAAGTGC
Found at i:62643797 original size:6 final size:7
Alignment explanation
Indices: 62643771--62643796 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
62643761 AAATATATAC
62643771 TTTTTTA
1 TTTTTTA
62643778 TTTTTTA
1 TTTTTTA
62643785 TTTTTTA
1 TTTTTTA
62643792 TTTTT
1 TTTTT
62643797 AAAATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:62643807 original size:12 final size:12
Alignment explanation
Indices: 62643791--62643819 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
62643781 TTTATTTTTT
62643791 ATTTTTAAAAT-
1 ATTTTTAAAATA
62643802 ATTTTTAAAATA
1 ATTTTTAAAATA
62643814 ATTTTT
1 ATTTTT
62643820 TGGTGTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTTTTAAAATA
Found at i:62644178 original size:28 final size:28
Alignment explanation
Indices: 62644146--62644202 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
62644136 TTTAATTACT
62644146 CAATTTAAGTCTCCAATCTAACTTTTAA
1 CAATTTAAGTCTCCAATCTAACTTTTAA
62644174 CAATTTAAGTCTCCAATCTAACTTTTAA
1 CAATTTAAGTCTCCAATCTAACTTTTAA
62644202 C
1 C
62644203 CTTTGTTCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.23, G:0.04, T:0.39
Consensus pattern (28 bp):
CAATTTAAGTCTCCAATCTAACTTTTAA
Found at i:62644741 original size:15 final size:15
Alignment explanation
Indices: 62644721--62644752 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
62644711 TAATGTCTCA
62644721 TGTCATTCTTGAACT
1 TGTCATTCTTGAACT
62644736 TGTCATTCTTGAACT
1 TGTCATTCTTGAACT
62644751 TG
1 TG
62644753 CCCTTCTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.47
Consensus pattern (15 bp):
TGTCATTCTTGAACT
Found at i:62644759 original size:15 final size:15
Alignment explanation
Indices: 62644724--62644761 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
62644714 TGTCTCATGT
*
62644724 CATTCTTGAACTTGT
1 CATTCTTGAACTTGC
62644739 CATTCTTGAACTTGC
1 CATTCTTGAACTTGC
*
62644754 CCTTCTTG
1 CATTCTTG
62644762 CATCTTTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.16, C:0.26, G:0.13, T:0.45
Consensus pattern (15 bp):
CATTCTTGAACTTGC
Found at i:62645488 original size:22 final size:22
Alignment explanation
Indices: 62645439--62645480 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
62645429 TATATTTTAG
62645439 TTAATATTTTATATATTTTATAA
1 TTAA-ATTTTATATATTTTATAA
*
62645462 TTAAATTTTAT-TTTTTTAT
1 TTAAATTTTATATATTTTAT
62645481 TATTTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 7 0.39
23 4 0.22
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (22 bp):
TTAAATTTTATATATTTTATAA
Found at i:62649283 original size:44 final size:44
Alignment explanation
Indices: 62649234--62649321 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
62649224 TTGAAAGCCC
62649234 CTGGGAGAGATGGTTTTTATGCCTTATTTTTCCAAAGTCAATGG
1 CTGGGAGAGATGGTTTTTATGCCTTATTTTTCCAAAGTCAATGG
62649278 CTGGGAGAGATGGTTTTTATGCCTTATTTTTCCAAAGTCAATGG
1 CTGGGAGAGATGGTTTTTATGCCTTATTTTTCCAAAGTCAATGG
62649322 GATCATGTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.23, C:0.14, G:0.25, T:0.39
Consensus pattern (44 bp):
CTGGGAGAGATGGTTTTTATGCCTTATTTTTCCAAAGTCAATGG
Found at i:62660963 original size:14 final size:14
Alignment explanation
Indices: 62660944--62660985 Score: 75
Period size: 14 Copynumber: 3.0 Consensus size: 14
62660934 AGTTGAACTA
62660944 TATTAAGCAGTTAG
1 TATTAAGCAGTTAG
*
62660958 TATTAAGTAGTTAG
1 TATTAAGCAGTTAG
62660972 TATTAAGCAGTTAG
1 TATTAAGCAGTTAG
62660986 AAAGTTGTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (14 bp):
TATTAAGCAGTTAG
Found at i:62662293 original size:78 final size:78
Alignment explanation
Indices: 62662164--62662318 Score: 283
Period size: 78 Copynumber: 2.0 Consensus size: 78
62662154 TTTTTATGGC
*
62662164 CAAGGGAACTATGCTAGTCAAAATAGGCATGTTGATGGTCAAAATTGGTGTGCTGGCGTGCAAAA
1 CAAGGGAACTATGCTAGTCAAAATAGGCATGTTGATGGTCAAAATTGGTGTGCTGGCATGCAAAA
*
62662229 TGATCATTTGGTA
66 TGATAATTTGGTA
*
62662242 CAAGGGAACTATGCTAGTCAAAATAGGCATGTTGATGGTCAAAATTGGTGTGCTGGCATGTAAAA
1 CAAGGGAACTATGCTAGTCAAAATAGGCATGTTGATGGTCAAAATTGGTGTGCTGGCATGCAAAA
62662307 TGATAATTTGGT
66 TGATAATTTGGT
62662319 GCGTGTGCCA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 74 1.00
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.29
Consensus pattern (78 bp):
CAAGGGAACTATGCTAGTCAAAATAGGCATGTTGATGGTCAAAATTGGTGTGCTGGCATGCAAAA
TGATAATTTGGTA
Found at i:62666110 original size:14 final size:14
Alignment explanation
Indices: 62666091--62666118 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
62666081 GATGGATGAA
62666091 TATTAAGCAGTTAG
1 TATTAAGCAGTTAG
62666105 TATTAAGCAGTTAG
1 TATTAAGCAGTTAG
62666119 AAAGTTGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
TATTAAGCAGTTAG
Found at i:62669675 original size:21 final size:21
Alignment explanation
Indices: 62669649--62669689 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
62669639 CCTATGAGCT
62669649 GGACCGGGTTTGGGTTGGGCC
1 GGACCGGGTTTGGGTTGGGCC
62669670 GGACCGGGTTTGGGTTGGGC
1 GGACCGGGTTTGGGTTGGGC
62669690 TAGGCTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.05, C:0.17, G:0.54, T:0.24
Consensus pattern (21 bp):
GGACCGGGTTTGGGTTGGGCC
Found at i:62678552 original size:86 final size:86
Alignment explanation
Indices: 62678403--62678750 Score: 480
Period size: 86 Copynumber: 4.0 Consensus size: 86
62678393 AGTAAAAATT
* * * *
62678403 GAAGATAAACCTTACCTCTCTCGGTCGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGACTTCCT
1 GAAGACAAACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
62678468 GCATTGATAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* *
62678489 GAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATTGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
62678554 ACATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* * * * *
62678575 GAAGCCAAACCTTGCCTCTCTCGGTTATAGCAAAGCTGGTTGAAGATAACAGATCTTGCCTTCAT
1 GAAGACAAACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
62678640 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* * * * * * * *
62678661 AAAGAAAAAACTTGCCTCTCTCGTTTGTAGCAGAGCTGGCTAAAGATAGCAGATATTCCCTTCCT
1 GAAGACAAACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
* *
62678726 GTATTTGGCAGCGAAGCAGATC
66 GCA-TTGACAGCGAAGCAGATC
62678748 GAA
1 GAA
62678751 AATGGCAGAT
Statistics
Matches: 229, Mismatches: 32, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
86 210 0.92
87 19 0.08
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (86 bp):
GAAGACAAACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
GCATTGACAGCGAAGCAGATC
Found at i:62678963 original size:134 final size:134
Alignment explanation
Indices: 62678710--62679115 Score: 452
Period size: 134 Copynumber: 3.1 Consensus size: 134
62678700 CTAAAGATAG
* *
62678710 CAGATATTCCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAAATGGCAGATTTTACCTCCCTGTG
1 CAGATCTTCCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTG
* *** *
62678775 ACTACAGTGGAGTACATTGAAGCCAATAACTCTATCT-CCTTGGTTGGCAATGGAATAGATTGAA
66 ACTACAGTGGAGTACATTGAAGCCAATAACTCTATCTCCCTAGG-CAACAGTGGAATAGATTGAA
*
62678839 TATTA
130 GATTA
*
62678844 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTG
1 CAGATCTTCCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTG
* *
62678909 ACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTAGGCAACAGTGGAATAGATCGAAG
66 ACTACAGTGGAGTACATTGAAGCCAATAACTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAG
62678974 ATTA
131 ATTA
* * * * * * *
62678978 AAGATCTTATCCC--CCTAAGCA-ATAG-TG-GAA-CAGGTCGAAGATGGCGGATTTTACCT--C
1 CAGATC-T-TCCCTTCCT--GTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCC
* * * * * ** * * *
62679035 TCTGATTACGGTAGAGTACATTAAAGCCAATAGTTCTATCTCCTTGGGCAACAGTGGAATAGAGT
62 TGTGACTACAGTGGAGTACATTGAAGCCAATAACTCTATCTCCCTAGGCAACAGTGGAATAGATT
62679100 GAAGATTA
127 GAAGATTA
62679108 CAGATCTT
1 CAGATCTT
62679116 ATCTCCCTAA
Statistics
Matches: 235, Mismatches: 32, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
128 1 0.00
129 1 0.00
130 67 0.29
132 24 0.10
133 3 0.01
134 126 0.54
135 8 0.03
136 5 0.02
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (134 bp):
CAGATCTTCCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTG
ACTACAGTGGAGTACATTGAAGCCAATAACTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAG
ATTA
Found at i:62679820 original size:82 final size:82
Alignment explanation
Indices: 62679112--62679799 Score: 1153
Period size: 82 Copynumber: 8.4 Consensus size: 82
62679102 AGATTACAGA
* **
62679112 TCTTATCTCCCTAAGCAATAGCGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAACAGTG
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
* *
62679177 GAGTAGATTGCATCAAG
66 GAGCAGATCGCATCAAG
* *
62679194 TCTTATCTCCCTAAGAAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTA
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
*
62679259 GAGCAGATCACATCAAG
66 GAGCAGATCGCATCAAG
* *
62679276 TCTTATCTCCTTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAATAGTG
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
62679341 GAGCAGATCGCATCAAG
66 GAGCAGATCGCATCAAG
* * *
62679358 TCTTATCTCCCTAAGCAATAGTGGAGCAGACGGAACTATAGATCTTATCTCCCTAAGCAGTAGTG
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
62679423 GAGCAGATCGCATCAAG
66 GAGCAGATCGCATCAAG
62679440 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
62679505 GAGCAGATCGCATCAAG
66 GAGCAGATCGCATCAAG
* *
62679522 TCTTATCTTCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGCAGTG
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
62679587 GAGCAGATCGCATCAAG
66 GAGCAGATCGCATCAAG
*
62679604 TCTTATCTCCCTAAGCAATAGTGGAGCAAACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
62679669 GAGCAGATCGCATCAAG
66 GAGCAGATCGCATCAAG
62679686 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTAT-TCCCCTAAGCAGTAGT
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCT-CCCTAAGCAGTAGT
* * *
62679750 GGAGTAGATCACATCCAG
65 GGAGCAGATCGCATCAAG
* * * *
62679768 TTTTAACTGCCTAAGCAGTAGTGGAGCAGACA
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGACA
62679800 AAAAAAACCA
Statistics
Matches: 571, Mismatches: 34, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
81 1 0.00
82 570 1.00
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (82 bp):
TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
GAGCAGATCGCATCAAG
Found at i:62680518 original size:15 final size:15
Alignment explanation
Indices: 62680498--62680552 Score: 67
Period size: 15 Copynumber: 3.5 Consensus size: 15
62680488 TGATATTTCG
*
62680498 TTTTTTAGTATGT-GT
1 TTTTTTA-TATCTAGT
62680513 TTTTTTATATCTAGTTT
1 TTTTTTATATCTAG--T
62680530 TTTTTTATATCTAGT
1 TTTTTTATATCTAGT
62680545 TTTTTTAT
1 TTTTTTAT
62680553 TTTTTTATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
14 4 0.11
15 17 0.47
17 15 0.42
ACGTcount: A:0.16, C:0.04, G:0.09, T:0.71
Consensus pattern (15 bp):
TTTTTTATATCTAGT
Found at i:62680532 original size:17 final size:17
Alignment explanation
Indices: 62680512--62680550 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
62680502 TTAGTATGTG
62680512 TTTTTTTATATCTAGTT
1 TTTTTTTATATCTAGTT
62680529 TTTTTTTATATCTAGTT
1 TTTTTTTATATCTAGTT
62680546 TTTTT
1 TTTTT
62680551 ATTTTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.74
Consensus pattern (17 bp):
TTTTTTTATATCTAGTT
Found at i:62686123 original size:12 final size:11
Alignment explanation
Indices: 62686106--62686161 Score: 51
Period size: 12 Copynumber: 4.9 Consensus size: 11
62686096 GTTTATAAAG
*
62686106 ATATATATGCAT
1 ATATATAT-AAT
62686118 ATATATAATAAT
1 ATATAT-ATAAT
62686130 ATATATATAAT
1 ATATATATAAT
* *
62686141 A-AGATATAAAG
1 ATATATAT-AAT
62686152 ATATATATAA
1 ATATATATAA
62686162 GTAGTTACAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
10 5 0.14
11 11 0.30
12 19 0.51
13 2 0.05
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (11 bp):
ATATATATAAT
Found at i:62686133 original size:14 final size:14
Alignment explanation
Indices: 62686116--62686148 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
62686106 ATATATATGC
*
62686116 ATATATATAATAAT
1 ATATATATAATAAG
62686130 ATATATATAATAAG
1 ATATATATAATAAG
62686144 ATATA
1 ATATA
62686149 AAGATATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (14 bp):
ATATATATAATAAG
Found at i:62686155 original size:22 final size:21
Alignment explanation
Indices: 62686099--62686161 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 21
62686089 AAAAAACGTT
* *
62686099 TATAAAGATATATATGCATATA
1 TATAAAGATATATAT-AATAGA
*
62686121 TATAATAATATATATATAATAAGA
1 TAT-A-AAGATATATATAAT-AGA
62686145 TATAAAGATATATATAA
1 TATAAAGATATATATAA
62686162 GTAGTTACAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
22 15 0.44
23 4 0.12
24 15 0.44
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.37
Consensus pattern (21 bp):
TATAAAGATATATATAATAGA
Found at i:62686245 original size:17 final size:17
Alignment explanation
Indices: 62686223--62686269 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
62686213 TAAATATGAA
62686223 ATAATAATATAACAATG
1 ATAATAATATAACAATG
*
62686240 ATAAT-ATAAAACTAATG
1 ATAATAATATAAC-AATG
62686257 AT-ATAATATAACA
1 ATAATAATATAACA
62686270 GTAGTAACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 9 0.35
17 17 0.65
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.30
Consensus pattern (17 bp):
ATAATAATATAACAATG
Found at i:62687301 original size:12 final size:12
Alignment explanation
Indices: 62687286--62687318 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
62687276 AGTTGTATAG
62687286 TGTAATTAGCAA
1 TGTAATTAGCAA
62687298 TGTAATTAGCAA
1 TGTAATTAGCAA
62687310 TGTAATTAG
1 TGTAATTAG
62687319 TTACACCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.36
Consensus pattern (12 bp):
TGTAATTAGCAA
Found at i:62694080 original size:15 final size:16
Alignment explanation
Indices: 62694053--62694082 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
62694043 GAAAACATAG
62694053 TAATTTAAATATAATT
1 TAATTTAAATATAATT
62694069 TAATTT-AATATAAT
1 TAATTTAAATATAAT
62694083 ACATAACCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TAATTTAAATATAATT
Found at i:62694497 original size:17 final size:18
Alignment explanation
Indices: 62694466--62694499 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
62694456 GAGAACATTG
*
62694466 ATAAGATGTTTTTTTAAC
1 ATAAGATGTTCTTTTAAC
62694484 ATAA-ATGTTCTTTTAA
1 ATAAGATGTTCTTTTAA
62694500 TAGTTCAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.35, C:0.06, G:0.09, T:0.50
Consensus pattern (18 bp):
ATAAGATGTTCTTTTAAC
Found at i:62697298 original size:21 final size:20
Alignment explanation
Indices: 62697259--62697298 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
62697249 CTTCGATAAA
**
62697259 ATTTAAAATTTAATTATTAT
1 ATTTAAAATTTAAAAATTAT
62697279 ATTTAAAAATTTAAAAATTA
1 ATTT-AAAATTTAAAAATTA
62697299 AGTACTAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTTAAAATTTAAAAATTAT
Found at i:62711009 original size:21 final size:21
Alignment explanation
Indices: 62710983--62711023 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
62710973 ATCTGCTCAA
* *
62710983 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
62711004 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
62711024 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:62716637 original size:30 final size:30
Alignment explanation
Indices: 62716602--62716660 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
62716592 TTATTTTACT
62716602 TAGTTAAAATCCTAGTTTTTAATCACCTCA
1 TAGTTAAAATCCTAGTTTTTAATCACCTCA
62716632 TAGTTAAAATCCTAGTTTTTAATCACCTC
1 TAGTTAAAATCCTAGTTTTTAATCACCTC
62716661 CACAAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.32, C:0.20, G:0.07, T:0.41
Consensus pattern (30 bp):
TAGTTAAAATCCTAGTTTTTAATCACCTCA
Found at i:62718396 original size:15 final size:16
Alignment explanation
Indices: 62718368--62718397 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62718358 AAGAATATTG
62718368 AATTAAAAATTAGAGA
1 AATTAAAAATTAGAGA
62718384 AATTAAAAA-TAGAG
1 AATTAAAAATTAGAG
62718398 TTAAGAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.63, C:0.00, G:0.13, T:0.23
Consensus pattern (16 bp):
AATTAAAAATTAGAGA
Found at i:62736914 original size:26 final size:25
Alignment explanation
Indices: 62736884--62736932 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
62736874 TCTATGATTA
*
62736884 TATAAAAAAAATCAATTAACATAATT
1 TATAAAAAAAATAAATTAA-ATAATT
* *
62736910 TATAAATATAATAAATTAAATAA
1 TATAAAAAAAATAAATTAAATAA
62736933 ATAACTCCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (25 bp):
TATAAAAAAAATAAATTAAATAATT
Found at i:62740516 original size:147 final size:148
Alignment explanation
Indices: 62740326--62740621 Score: 567
Period size: 147 Copynumber: 2.0 Consensus size: 148
62740316 CTGTAACATA
* *
62740326 AATGGGTGTGTTTTTTTTCTCTTTTTTTGTCCTCTTTTCATTTTCCCTTTTTGCAATAGACGAAC
1 AATGGGTGTGTTTTTTTTCTCTTTTCTTGTCCTCTTTTCATTTTCCCTTTTTACAATAGACGAAC
62740391 TTTGAGAGAAATAAAAATAGAAAACCAATTTAAAAGGGGA-TTTTTTTATTTCATTTTGGGTTCG
66 TTTGAGAGAAATAAAAATAGAAAACCAATTTAAAAGGGGATTTTTTTTATTTCATTTTGGGTTCG
62740455 ATTCTTTTATTGGATTTT
131 ATTCTTTTATTGGATTTT
62740473 AATGGGTGTGTTTTTTTTCTCTTTTCTTGTCCTCTTTTCATTTTCCCTTTTTACAATAGACGAAC
1 AATGGGTGTGTTTTTTTTCTCTTTTCTTGTCCTCTTTTCATTTTCCCTTTTTACAATAGACGAAC
62740538 TTTGAGAGAAATAAAAATAGAAAACCAATTTAAAAGGGGATTTTTTTTATTTCATTTTGGGTTCG
66 TTTGAGAGAAATAAAAATAGAAAACCAATTTAAAAGGGGATTTTTTTTATTTCATTTTGGGTTCG
62740603 ATTCTTTTATTGGATTTT
131 ATTCTTTTATTGGATTTT
62740621 A
1 A
62740622 TTGTTCTTTT
Statistics
Matches: 146, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
147 103 0.71
148 43 0.29
ACGTcount: A:0.25, C:0.12, G:0.15, T:0.48
Consensus pattern (148 bp):
AATGGGTGTGTTTTTTTTCTCTTTTCTTGTCCTCTTTTCATTTTCCCTTTTTACAATAGACGAAC
TTTGAGAGAAATAAAAATAGAAAACCAATTTAAAAGGGGATTTTTTTTATTTCATTTTGGGTTCG
ATTCTTTTATTGGATTTT
Found at i:62741559 original size:3 final size:3
Alignment explanation
Indices: 62741551--62741584 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
62741541 TTTAATCTTG
62741551 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
62741585 TACTCATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:62742376 original size:71 final size:73
Alignment explanation
Indices: 62742252--62742388 Score: 197
Period size: 71 Copynumber: 1.9 Consensus size: 73
62742242 AACCTAAGTT
* * * *
62742252 TTTTAAACGATATCAGGAATTAAAGAAGAGATTGTGTCCTAACTTATTGGGCATGAT-CCTTTTT
1 TTTTAAACGATATCAGGAATTAAAGAAAAGATCGTGTCCTAACTTACTCGGCATGATCCCTTTTT
62742316 TCCTCAAG
66 TCCTCAAG
* **
62742324 TTTTAAACGATCTTGGGAATT-AAGAAAAGATCGTGTCCTAACTTACTCGGCATGATCCCTTTTT
1 TTTTAAACGATATCAGGAATTAAAGAAAAGATCGTGTCCTAACTTACTCGGCATGATCCCTTTTT
62742388 T
66 T
62742389 AATCTGAGAC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
71 31 0.54
72 26 0.46
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (73 bp):
TTTTAAACGATATCAGGAATTAAAGAAAAGATCGTGTCCTAACTTACTCGGCATGATCCCTTTTT
TCCTCAAG
Found at i:62748112 original size:89 final size:89
Alignment explanation
Indices: 62747963--62748461 Score: 624
Period size: 89 Copynumber: 5.6 Consensus size: 89
62747953 CAGATCAGTA
* * * *
62747963 AAGATAGCAGATCTTACCTTCCTATACTGACAGTGAAGCTGATCGAAGACACCAGCCTTGCCTTC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* * *
62748028 CTATACTGACAGCGGAGCATACTA
66 CTGTACTGACAGCGGAGCAGACTG
* * * *
62748052 AAGATAGTAGATGTTGCCTTCATGTACTGACAGCGAAGCAGATCGAAGACACTAGCCTTGCCTTC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* **
62748117 CTGTACTGACAGTGGAGTGGACTG
66 CTGTACTGACAGCGGAGCAGACTG
* *
62748141 AAGATAGCAGATCTTGCCTTCCTATACTGATAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* * **
62748206 CTATACTGATAGTAGAGCAGACTG
66 CTGTACTGACAGCGGAGCAGACTG
62748230 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* * *
62748295 CTGTTCTGACAGCGAAACAGACTG
66 CTGTACTGACAGCGGAGCAGACTG
** * * * * * * * *
62748319 AAGATAATAGATCTCGCCTTCCCGTACTTACAGCGAAGCAGATCGATGACACTAGTCTTACCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* **
62748384 CTGGGT-TTG-CAGCGGAATAGACTG
66 CT--GTACTGACAGCGGAGCAGACTG
* *
62748408 AAGATAGCAAATCTTGTCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCA
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCA
62748462 TAGTTTGCAG
Statistics
Matches: 352, Mismatches: 56, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
89 348 0.99
90 2 0.01
91 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.23
Consensus pattern (89 bp):
AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
CTGTACTGACAGCGGAGCAGACTG
Found at i:62748445 original size:267 final size:267
Alignment explanation
Indices: 62747963--62748461 Score: 714
Period size: 267 Copynumber: 1.9 Consensus size: 267
62747953 CAGATCAGTA
* *
62747963 AAGATAGCAGATCTTACCTTCCTATACTGACAGTGAAGCTGATCGAAGACACCAGCCTTGCCTTC
1 AAGATAGCAGATCTTACCTTCCTATACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* * * * * * *
62748028 CTATACTGACAGCGGAGCATACTAAAGATAGTAGATGTTGCCTTCATGTACTGACAGCGAAGCAG
66 CTATACTGACAGCGAAACAGACTAAAGATAATAGATCTCGCCTTCACGTACTGACAGCGAAGCAG
* * * * * *
62748093 ATCGAAGACACTAGCCTTGCCTTCCTGTACTGACAGTGGAGTGGACTGAAGATAGCAGATCTTGC
131 ATCGAAGACACTAGCCTTACCTCCCTGTACTGACAGCGGAATAGACTGAAGATAGCAAATCTTGC
*
62748158 CTTCCTATACTGATAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTATACTGATAGTAGAG
196 CTTCCTATACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTATACTGATAGTAGAG
62748223 CAGACTG
261 CAGACTG
* *
62748230 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
1 AAGATAGCAGATCTTACCTTCCTATACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* * * * *
62748295 CTGTTCTGACAGCGAAACAGACTGAAGATAATAGATCTCGCCTTCCCGTACTTACAGCGAAGCAG
66 CTATACTGACAGCGAAACAGACTAAAGATAATAGATCTCGCCTTCACGTACTGACAGCGAAGCAG
* * *
62748360 ATCGATGACACTAGTCTTACCTCCCTGGGT-TTG-CAGCGGAATAGACTGAAGATAGCAAATCTT
131 ATCGAAGACACTAGCCTTACCTCCCT--GTACTGACAGCGGAATAGACTGAAGATAGCAAATCTT
* *
62748423 GTCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCA
194 GCCTTCCTATACTGACAGCGAAGCAGATCGAAGACACCA
62748462 TAGTTTGCAG
Statistics
Matches: 202, Mismatches: 28, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
267 198 0.98
268 2 0.01
269 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.23
Consensus pattern (267 bp):
AAGATAGCAGATCTTACCTTCCTATACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
CTATACTGACAGCGAAACAGACTAAAGATAATAGATCTCGCCTTCACGTACTGACAGCGAAGCAG
ATCGAAGACACTAGCCTTACCTCCCTGTACTGACAGCGGAATAGACTGAAGATAGCAAATCTTGC
CTTCCTATACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTATACTGATAGTAGAG
CAGACTG
Found at i:62748541 original size:50 final size:49
Alignment explanation
Indices: 62748489--62748734 Score: 179
Period size: 50 Copynumber: 4.9 Consensus size: 49
62748479 AATTAAAGAT
* * * *
62748489 AGCGAATCTTACTTCTCTAGCGGTGTAGTGGAACAGATTAAAGCTACAAT
1 AGCGAATCTTACTTC-CTAGCGGTGCAGTGGAAAAGATTGAAGCTACAAC
* ** ** **
62748539 AGCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTGAAGCTACAAC
1 AGCGAATCTTACTTCCTAG-CGGTGCAGTGGAAAAGATTGAAGCTACAAC
* ** *
62748589 AGTGAATCTTACTTCCCTAAAGGTGCAGTGGAATAGATTGAAGCTACAAC
1 AGCGAATCTTACTT-CCTAGCGGTGCAGTGGAAAAGATTGAAGCTACAAC
** ** *
62748639 AGCGAATCTTACTTCCCCGACATTGCAGT-TAAATAGATTGAAGCTACAAC
1 AGCGAATCTTACTTCCTAG-CGGTGCAGTGGAAA-AGATTGAAGCTACAAC
* * * * * * * *
62748689 AACAAATCTTATTTCCCTGGCGTTACAGTGGAATAGATTAAAGCTA
1 AGCGAATCTTACTT-CCTAGCGGTGCAGTGGAAAAGATTGAAGCTA
62748735 AAGCAGAGTA
Statistics
Matches: 149, Mismatches: 41, Indels: 12
0.74 0.20 0.06
Matches are distributed among these distances:
49 6 0.04
50 136 0.91
51 7 0.05
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (49 bp):
AGCGAATCTTACTTCCTAGCGGTGCAGTGGAAAAGATTGAAGCTACAAC
Found at i:62748633 original size:100 final size:100
Alignment explanation
Indices: 62748491--62748734 Score: 344
Period size: 100 Copynumber: 2.4 Consensus size: 100
62748481 TTAAAGATAG
* * * * *
62748491 CGAATCTTACTTCTCTAGCGGTGTAGTGGAACAGATTAAAGCTACAATAGCGAATCTTGCTTCCC
1 CGAATCTTACTTCCCTAGCGGTGCAGTGGAATAGATTAAAGCTACAACAGCGAATCTTACTTCCC
*
62748556 CGACATTGCAGTTAAAAAGATTGAAGCTACAACAG
66 CGACATTGCAGTTAAAAAGATTGAAGCTACAACAA
* ** *
62748591 TGAATCTTACTTCCCTAAAGGTGCAGTGGAATAGATTGAAGCTACAACAGCGAATCTTACTTCCC
1 CGAATCTTACTTCCCTAGCGGTGCAGTGGAATAGATTAAAGCTACAACAGCGAATCTTACTTCCC
*
62748656 CGACATTGCAGTTAAATAGATTGAAGCTACAACAA
66 CGACATTGCAGTTAAAAAGATTGAAGCTACAACAA
* * * * *
62748691 CAAATCTTATTTCCCTGGCGTTACAGTGGAATAGATTAAAGCTA
1 CGAATCTTACTTCCCTAGCGGTGCAGTGGAATAGATTAAAGCTA
62748735 AAGCAGAGTA
Statistics
Matches: 124, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
100 124 1.00
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (100 bp):
CGAATCTTACTTCCCTAGCGGTGCAGTGGAATAGATTAAAGCTACAACAGCGAATCTTACTTCCC
CGACATTGCAGTTAAAAAGATTGAAGCTACAACAA
Found at i:62749144 original size:44 final size:44
Alignment explanation
Indices: 62749091--62749186 Score: 131
Period size: 44 Copynumber: 2.2 Consensus size: 44
62749081 CTTATCTTCT
62749091 TGAAGTTGCAGTAGAGCAGGTTGAAGTA-GCAAACCTTATCCCCC
1 TGAAGTTGCAGTAGAGCAGGTTGAA-TATGCAAACCTTATCCCCC
* * ** *
62749135 TGAAGTTGCAGTGGGGCAGGTTGAATATGCAAGTCTTATCTCCC
1 TGAAGTTGCAGTAGAGCAGGTTGAATATGCAAACCTTATCCCCC
62749179 TGAAGTTG
1 TGAAGTTG
62749187 TAGTGAAGCA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 2 0.04
44 44 0.96
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (44 bp):
TGAAGTTGCAGTAGAGCAGGTTGAATATGCAAACCTTATCCCCC
Found at i:62749737 original size:43 final size:43
Alignment explanation
Indices: 62749636--62749989 Score: 412
Period size: 43 Copynumber: 8.3 Consensus size: 43
62749626 TTTAAAAAAT
* * * *
62749636 AAACGCAGCTATAGACCATGACCTTTAGCGGTGCTTTTCC-AC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCTAC
* *
62749678 AAACGCCGCTATAGATCAAGACCTATAGCGGTGCTTTTCCTAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCTAC
* *
62749721 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCAAT
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCTAC
* * * * *
62749764 AAACGCCGCTAAAGACCATGATCTTTAGTGGCGCTTTT-CTAAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCT-AC
*
62749807 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTT-ATCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCT-AC
* * *
62749850 AAACGCTGCTATAGACCAAGACCTTTAGCGACGCTTTT-CTCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCT-AC
* * *
62749893 AAACTCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCCAAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCTAC
* * ***
62749936 AAACGCCGCTATA-ACTCAAGACTTTTAGCGACGCTTTAATTAC
1 AAACGCCGCTATAGA-TCAAGACCTTTAGCGGCGCTTTTCCTAC
62749979 AAACGCCGCTA
1 AAACGCCGCTA
62749990 AAAATTTCGT
Statistics
Matches: 272, Mismatches: 36, Indels: 7
0.86 0.11 0.02
Matches are distributed among these distances:
42 38 0.14
43 233 0.86
44 1 0.00
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCTAC
Found at i:62749844 original size:129 final size:128
Alignment explanation
Indices: 62749633--62749989 Score: 459
Period size: 129 Copynumber: 2.8 Consensus size: 128
62749623 CGTTTTAAAA
* * *
62749633 AATAAACGCAGCTATAGACCATGACCTTTAGCGGTGCTTTTCCACAAACGCCGCTATAGATCAAG
1 AATAAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCAACAAACGCCGCTATAGATCAAG
* * * * *
62749698 ACCTATAGCGGTGCTTTTCCTACAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTC-C
66 ACCTTTAGCGGCGCTTTT-ATACAAACGCCGCTATAGACCAAGACCTTTAGCGACGCTTTTCTC
* * *
62749761 AATAAACGCCGCTAAAGACCATGATCTTTAGTGGCGCTTTTCTAACAAACGCCGCTATAGATCAA
1 AATAAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTC-AACAAACGCCGCTATAGATCAA
*
62749826 GACCTTTAGCGGCGCTTTTATCACAAACGCTGCTATAGACCAAGACCTTTAGCGACGCTTTTCTC
65 GACCTTTAGCGGCGCTTTTAT-ACAAACGCCGCTATAGACCAAGACCTTTAGCGACGCTTTTCTC
* * * * *
62749891 -ACAAACTCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCCAACAAACGCCGCTATA-ACTCA
1 AATAAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTT-CAACAAACGCCGCTATAGA-TCA
* * *
62749954 AGACTTTTAGCGACGCTTTAATTACAAACGCCGCTA
64 AGACCTTTAGCGGCGCTTTTA-TACAAACGCCGCTA
62749990 AAAATTTCGT
Statistics
Matches: 199, Mismatches: 24, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
128 39 0.20
129 157 0.79
130 3 0.02
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (128 bp):
AATAAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCAACAAACGCCGCTATAGATCAAG
ACCTTTAGCGGCGCTTTTATACAAACGCCGCTATAGACCAAGACCTTTAGCGACGCTTTTCTC
Found at i:62750082 original size:16 final size:16
Alignment explanation
Indices: 62750063--62750096 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
62750053 AAATATTAAA
*
62750063 TATTAAAATCAAACAT
1 TATTAAAATCAAAAAT
*
62750079 TATTAATATCAAAAAT
1 TATTAAAATCAAAAAT
62750095 TA
1 TA
62750097 ATTAGTATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (16 bp):
TATTAAAATCAAAAAT
Found at i:62754678 original size:22 final size:22
Alignment explanation
Indices: 62754652--62754728 Score: 77
Period size: 22 Copynumber: 3.5 Consensus size: 22
62754642 ATCTAAACAC
* * * *
62754652 TAAACCCTTAATCCCTATCCTT
1 TAAACCCTTAAACCCAAACCCT
*
62754674 TAAACCC-TAAACCCCAACCCCT
1 TAAACCCTTAAA-CCCAAACCCT
*
62754696 TAAA-CCTTAAACCCCAACCCT
1 TAAACCCTTAAACCCAAACCCT
62754717 TAAACCCTTAAA
1 TAAACCCTTAAA
62754729 ACCTAAATCT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
21 17 0.37
22 29 0.63
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.23
Consensus pattern (22 bp):
TAAACCCTTAAACCCAAACCCT
Found at i:62755233 original size:41 final size:40
Alignment explanation
Indices: 62755188--62755526 Score: 356
Period size: 41 Copynumber: 8.3 Consensus size: 40
62755178 AATACATTGT
* * *
62755188 GCGGCGCTTTTCGAAAAACGCCGCAAAAGATCAGAGCATTA
1 GCGGCGCTTTTC-AAAAACGCCGCTATAGACCAGAGCATTA
*
62755229 GCGGCGCTTATTCAAAAACGCCGCTAAAGACCAGAGCATTA
1 GCGGCGCTT-TTCAAAAACGCCGCTATAGACCAGAGCATTA
* * *
62755270 GCGGCGCTTTCCCAAAAGCGCCGCTATAGACTAGAGCATTA
1 GCGGCGCTTT-TCAAAAACGCCGCTATAGACCAGAGCATTA
* **
62755311 GCGGCGCTTCAT-AAAAAGCGCTTCTATAGACCAGAGCATTA
1 GCGGCGCTT-TTCAAAAA-CGCCGCTATAGACCAGAGCATTA
* * * *
62755352 GTGTCGCTTCATCATAAACGCCGCTATAGACCAGAGCATTA
1 GCGGCGCTT-TTCAAAAACGCCGCTATAGACCAGAGCATTA
* * *
62755393 GCGGCGCTTTCCCAAAAGCGCCGCTATAGACCACAGCATTA
1 GCGGCGCTTT-TCAAAAACGCCGCTATAGACCAGAGCATTA
* *
62755434 GCGGCGCTTCATCAAAAACGCCGCTATAGACCAAAGCATTA
1 GCGGCGCTT-TTCAAAAACGCCGCTATAGACCAGAGCATTA
** * * * *
62755475 GCGGCGCTTCAACAAAAACGCCTCTAAAGGCTAGAGCATTA
1 GCGGCGCTT-TTCAAAAACGCCGCTATAGACCAGAGCATTA
*
62755516 ACGGCGCTTTT
1 GCGGCGCTTTT
62755527 TGAGAAACGC
Statistics
Matches: 254, Mismatches: 37, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
40 5 0.02
41 242 0.95
42 7 0.03
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (40 bp):
GCGGCGCTTTTCAAAAACGCCGCTATAGACCAGAGCATTA
Found at i:62755407 original size:123 final size:123
Alignment explanation
Indices: 62755188--62755525 Score: 466
Period size: 123 Copynumber: 2.7 Consensus size: 123
62755178 AATACATTGT
* * * *
62755188 GCGGCGCTT-TTCGAAAAACGCCGCAAAAGATCAGAGCATTAGCGGCGCTT-ATTCAAAAACGCC
1 GCGGCGCTTCATC-AAAAACGCCGCTATAGACCAGAGCATTAGCGGCGCTTCA-TCAAAAACGCC
* *
62755251 GCTAAAGACCAGAGCATTAGCGGCGCTTTCCCAAAAGCGCCGCTATAGACTAGAGCATTA
64 GCTAAAGACCAGAGCATTAGCGGCGCTTTCCCAAAAGCGCCGCTATAGACCACAGCATTA
** * * *
62755311 GCGGCGCTTCAT-AAAAAGCGCTTCTATAGACCAGAGCATTAGTGTCGCTTCATCATAAACGCCG
1 GCGGCGCTTCATCAAAAA-CGCCGCTATAGACCAGAGCATTAGCGGCGCTTCATCAAAAACGCCG
*
62755375 CTATAGACCAGAGCATTAGCGGCGCTTTCCCAAAAGCGCCGCTATAGACCACAGCATTA
65 CTAAAGACCAGAGCATTAGCGGCGCTTTCCCAAAAGCGCCGCTATAGACCACAGCATTA
* * *
62755434 GCGGCGCTTCATCAAAAACGCCGCTATAGACCAAAGCATTAGCGGCGCTTCAACAAAAACGCCTC
1 GCGGCGCTTCATCAAAAACGCCGCTATAGACCAGAGCATTAGCGGCGCTTCATCAAAAACGCCGC
* * *
62755499 TAAAGGCTAGAGCATTAACGGCGCTTT
66 TAAAGACCAGAGCATTAGCGGCGCTTT
62755526 TTGAGAAACG
Statistics
Matches: 187, Mismatches: 24, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
122 5 0.03
123 175 0.94
124 7 0.04
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (123 bp):
GCGGCGCTTCATCAAAAACGCCGCTATAGACCAGAGCATTAGCGGCGCTTCATCAAAAACGCCGC
TAAAGACCAGAGCATTAGCGGCGCTTTCCCAAAAGCGCCGCTATAGACCACAGCATTA
Found at i:62755683 original size:40 final size:40
Alignment explanation
Indices: 62755639--62755717 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
62755629 GCGATTTCCA
62755639 AAAAGCGCCACTAATACTTAATCTTTAGCGGCGTTTTTTT
1 AAAAGCGCCACTAATACTTAATCTTTAGCGGCGTTTTTTT
** * * *
62755679 AAAAGCGCCGGTAATGCTTGATTTTTAGCGGCGTTTTTT
1 AAAAGCGCCACTAATACTTAATCTTTAGCGGCGTTTTTT
62755718 ATACAAAAGC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (40 bp):
AAAAGCGCCACTAATACTTAATCTTTAGCGGCGTTTTTTT
Found at i:62757242 original size:23 final size:22
Alignment explanation
Indices: 62757197--62757242 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
62757187 TATATTATTA
*
62757197 TATTATGTTATTAGTTTTGTAT
1 TATTATGTTATTAGTTTTCTAT
62757219 TATTATAGTTATT-GTATTTCTAT
1 TATTAT-GTTATTAGT-TTTCTAT
62757242 T
1 T
62757243 TAATTTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.24, C:0.02, G:0.11, T:0.63
Consensus pattern (22 bp):
TATTATGTTATTAGTTTTCTAT
Found at i:62758097 original size:71 final size:73
Alignment explanation
Indices: 62757970--62758109 Score: 221
Period size: 71 Copynumber: 1.9 Consensus size: 73
62757960 TTTCAAACCT
* *
62757970 AAGTTTTAAACGATCTCGGGAATTAAAGAAGAGATTGTGTCATAACTTACTGGGCATGAT-CCTT
1 AAGTTTTAAACGATCTCGGGAATTAAAGAAAAGATTGTGTCATAACTTACTAGGCATGATCCCTT
62758034 TTTTCCTC
66 TTTTCCTC
* * *
62758042 AAGTTTTAAACGATCTTGGGAATT-AAGAAAAGATTGTGTCCTAACTTATTAGGCATGATCCCTT
1 AAGTTTTAAACGATCTCGGGAATTAAAGAAAAGATTGTGTCATAACTTACTAGGCATGATCCCTT
62758106 TTTT
66 TTTT
62758110 AATTTGAGAT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
71 31 0.50
72 31 0.50
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (73 bp):
AAGTTTTAAACGATCTCGGGAATTAAAGAAAAGATTGTGTCATAACTTACTAGGCATGATCCCTT
TTTTCCTC
Found at i:62758275 original size:14 final size:14
Alignment explanation
Indices: 62758256--62758283 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
62758246 GTCGTATTTT
62758256 AAATCTCTTTAAAG
1 AAATCTCTTTAAAG
62758270 AAATCTCTTTAAAG
1 AAATCTCTTTAAAG
62758284 TTTTCAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (14 bp):
AAATCTCTTTAAAG
Found at i:62761915 original size:25 final size:26
Alignment explanation
Indices: 62761869--62761930 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 26
62761859 TAAACATATG
62761869 AATTATAAAACATGAAAATATA-AAT
1 AATTATAAAACATGAAAATATATAAT
* **
62761894 AATTATAAAATATGAATGTATATAAT
1 AATTATAAAACATGAAAATATATAAT
62761920 ATATATATAAA
1 A-AT-TATAAA
62761931 CTATATACAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.61
26 4 0.13
27 2 0.06
28 6 0.19
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.34
Consensus pattern (26 bp):
AATTATAAAACATGAAAATATATAAT
Found at i:62761957 original size:3 final size:3
Alignment explanation
Indices: 62761951--62761977 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
62761941 AAAAAATTTG
62761951 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
62761978 AACGTACTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:62763599 original size:132 final size:132
Alignment explanation
Indices: 62763413--62764348 Score: 1527
Period size: 132 Copynumber: 7.1 Consensus size: 132
62763403 GCCGTCATGA
* * *
62763413 CTTCAATCTATTCCACTACACT-ACCAGAGAAGTAAGAATTACTGGCTTCAATGTACTCCACTGT
1 CTTCAATCTATTCCACT--GCTGCCCAGGGAAGT-AGAATTACTGGCTTCAATGTACTCCACTGT
* * *
62763477 AACCTGAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAGGATCT
63 AACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCT
*
62763542 GTAAT
128 GAAAT
62763547 CTTCAATCTATTCCACTGCTGCCCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * *
62763611 CCTCAGGGAGGTAAAATTTGCCATCTTCGATCTACTCCACTAATGCCTAAGGAGATAAGATCTGA
65 CCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGA
62763676 AAT
130 AAT
* *
62763679 CTTCAATCTATTCCAATGCTGCTCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* * *
62763744 CACGGGGAGGTAAAATCTGCCATCTTCGATCTGCTCTACTAATGCCTAGGGAGATAAGATCTGAA
66 CTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGAA
62763809 AT
131 AT
* *
62763811 TTTCAATCTATTCCACTGCTGCCCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCATTGTAA
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * *
62763875 CCTCAGGGAGGTAAAATCTTCCATCTTCGATCTACTCCACTAATGCCTAGAGAGATAAGATCTGA
65 CCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGA
62763940 AAT
130 AAT
*
62763943 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTCCTGGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* *
62764008 CACGGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGAA
66 CTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGAA
62764073 AT
131 AT
*
62764075 CTTCAATCTATTCCACTGCTGCACAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
*
62764140 CTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAAGGAGATAAGATCTGAA
66 CTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGAA
62764205 AT
131 AT
62764207 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* * * * * *
62764272 CACAGGGAGGTAAAATCTGCCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGAA
66 CTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGAA
62764337 AT
131 AT
62764339 CTTCAATCTA
1 CTTCAATCTA
62764349 CTTCTCTGTT
Statistics
Matches: 750, Mismatches: 47, Indels: 12
0.93 0.06 0.01
Matches are distributed among these distances:
131 2 0.00
132 721 0.96
133 10 0.01
134 17 0.02
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (132 bp):
CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
CTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGAA
AT
Found at i:62766315 original size:16 final size:16
Alignment explanation
Indices: 62766293--62766331 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
62766283 CCAGTGGAAG
62766293 TTTTTTGT-TTCTTTT
1 TTTTTTGTGTTCTTTT
*
62766308 TGTTTTTGTGTTGTTTT
1 T-TTTTTGTGTTCTTTT
62766325 TTTTTTG
1 TTTTTTG
62766332 AATTGAATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 13 0.62
17 7 0.33
ACGTcount: A:0.00, C:0.03, G:0.15, T:0.82
Consensus pattern (16 bp):
TTTTTTGTGTTCTTTT
Found at i:62770032 original size:14 final size:14
Alignment explanation
Indices: 62770010--62770039 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
62770000 CATGATTGCC
62770010 AAATATTTAAAAAA
1 AAATATTTAAAAAA
*
62770024 AAATTTTTAAAAAA
1 AAATATTTAAAAAA
62770038 AA
1 AA
62770040 TGATGATGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AAATATTTAAAAAA
Found at i:62770490 original size:25 final size:26
Alignment explanation
Indices: 62770444--62770505 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 26
62770434 TAAACATATG
62770444 AATTATAAAACATGAAAATATA-AAT
1 AATTATAAAACATGAAAATATATAAT
* **
62770469 AATTATAAAATATGAATGTATATAAT
1 AATTATAAAACATGAAAATATATAAT
62770495 ATATATATAAA
1 A-AT-TATAAA
62770506 CTATATAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.61
26 4 0.13
27 2 0.06
28 6 0.19
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.34
Consensus pattern (26 bp):
AATTATAAAACATGAAAATATATAAT
Found at i:62770530 original size:3 final size:3
Alignment explanation
Indices: 62770524--62770559 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
62770514 AAAAAATTTG
62770524 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
62770560 AACGTACTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:62770641 original size:8 final size:8
Alignment explanation
Indices: 62770630--62770668 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
62770620 CATACATACA
62770630 ATAATAAT
1 ATAATAAT
62770638 ATAATAAT
1 ATAATAAT
*
62770646 AATAGTAAT
1 -ATAATAAT
62770655 AT-ATAAT
1 ATAATAAT
62770662 ATAATAA
1 ATAATAA
62770669 CAAAGATAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 6 0.22
8 14 0.52
9 7 0.26
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (8 bp):
ATAATAAT
Found at i:62776983 original size:17 final size:18
Alignment explanation
Indices: 62776952--62776985 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
62776942 GAGAACATTG
*
62776952 ATAAGATGTTTTTTTAAC
1 ATAAGATGTTCTTTTAAC
62776970 ATAA-ATGTTCTTTTAA
1 ATAAGATGTTCTTTTAA
62776986 TAGTTCAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.35, C:0.06, G:0.09, T:0.50
Consensus pattern (18 bp):
ATAAGATGTTCTTTTAAC
Found at i:62781961 original size:24 final size:23
Alignment explanation
Indices: 62781929--62781985 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
62781919 ATTAAATATA
* *
62781929 AAAAGATATATATAGACATAAAC
1 AAAATATATATATAGAAATAAAC
* *
62781952 TAAAATATATATATATAAATTAAC
1 -AAAATATATATATAGAAATAAAC
62781976 AAAATATATA
1 AAAATATATA
62781986 AAGTATATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 10 0.34
24 19 0.66
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.30
Consensus pattern (23 bp):
AAAATATATATATAGAAATAAAC
Found at i:62781969 original size:20 final size:21
Alignment explanation
Indices: 62781936--62781985 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
62781926 ATAAAAAGAT
*
62781936 ATATATAGACATAAACTAA-A
1 ATATATATACATAAACTAACA
* *
62781956 ATATATATATATAAATTAACA
1 ATATATATACATAAACTAACA
*
62781977 AAATATATA
1 ATATATATA
62781986 AAGTATATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (21 bp):
ATATATATACATAAACTAACA
Found at i:62782213 original size:3 final size:3
Alignment explanation
Indices: 62782205--62782236 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
62782195 AATAAGTAGG
62782205 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
62782237 GGACTAAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:62784193 original size:21 final size:21
Alignment explanation
Indices: 62784169--62784211 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
62784159 GAGGTGCCTA
*
62784169 TGGGCTGGACCGGGTTTGGGT
1 TGGGCCGGACCGGGTTTGGGT
62784190 TGGGCCGGACCGGGTTTGGGT
1 TGGGCCGGACCGGGTTTGGGT
62784211 T
1 T
62784212 TGGGTTGGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.05, C:0.16, G:0.51, T:0.28
Consensus pattern (21 bp):
TGGGCCGGACCGGGTTTGGGT
Found at i:62786694 original size:18 final size:19
Alignment explanation
Indices: 62786657--62786694 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
62786647 CATTGGTTTC
* *
62786657 AACTTCCTCTTTGTTCTCA
1 AACTTCCTCTTCGTTATCA
62786676 AACTT-CTCTTCGTTATCA
1 AACTTCCTCTTCGTTATCA
62786694 A
1 A
62786695 CCCTAATTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.21, C:0.29, G:0.05, T:0.45
Consensus pattern (19 bp):
AACTTCCTCTTCGTTATCA
Found at i:62789158 original size:16 final size:16
Alignment explanation
Indices: 62789132--62789164 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
62789122 AAATCAAATT
62789132 TAAAAATTTTTAGAAAA
1 TAAAAATTTTTA-AAAA
62789149 TAAAAA-TTTTAAAAA
1 TAAAAATTTTTAAAAA
62789164 T
1 T
62789165 TTATTTTCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 5 0.31
17 6 0.38
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
TAAAAATTTTTAAAAA
Found at i:62790463 original size:3 final size:3
Alignment explanation
Indices: 62790455--62790483 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
62790445 TTTTATCACT
62790455 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
62790484 TGAAATATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:62795613 original size:36 final size:36
Alignment explanation
Indices: 62795566--62795638 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
62795556 AGACTTGGAA
62795566 CTCCCTCCTGAGGTAGAGACACCAAGGGTTAATGCT
1 CTCCCTCCTGAGGTAGAGACACCAAGGGTTAATGCT
62795602 CTCCCTCCTGAGGTAGAGACACCAAGGGTTAATGCT
1 CTCCCTCCTGAGGTAGAGACACCAAGGGTTAATGCT
62795638 C
1 C
62795639 GTTCTTCTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.22
Consensus pattern (36 bp):
CTCCCTCCTGAGGTAGAGACACCAAGGGTTAATGCT
Found at i:62802287 original size:7 final size:7
Alignment explanation
Indices: 62802275--62802407 Score: 83
Period size: 7 Copynumber: 18.7 Consensus size: 7
62802265 ACTAGTTAAT
62802275 CTAAACC
1 CTAAACC
62802282 CTAAACC
1 CTAAACC
62802289 CTAAA-C
1 CTAAACC
62802295 CTAAACC
1 CTAAACC
62802302 CTAAAACC
1 CT-AAACC
62802310 CTAAACC
1 CTAAACC
* *
62802317 CTTAACA
1 CTAAACC
62802324 C-ATAACC
1 CTA-AACC
62802331 TCTAAACC
1 -CTAAACC
*
62802339 TTAAACC
1 CTAAACC
*
62802346 C-CAACC
1 CTAAACC
*
62802352 TTTAAACC
1 -CTAAACC
*
62802360 ATAAACC
1 CTAAACC
* *
62802367 ATAAATC
1 CTAAACC
* *
62802374 ATAACCC
1 CTAAACC
62802381 CTAAACC
1 CTAAACC
*
62802388 CATAATCC
1 C-TAAACC
*
62802396 ATAAACC
1 CTAAACC
*
62802403 TTAAA
1 CTAAA
62802408 ATAGTAACTC
Statistics
Matches: 99, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
6 10 0.10
7 67 0.68
8 21 0.21
9 1 0.01
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:62802820 original size:41 final size:41
Alignment explanation
Indices: 62802775--62803035 Score: 391
Period size: 41 Copynumber: 6.4 Consensus size: 41
62802765 GGCGCCTTTC
*
62802775 CAAAAACGCCGCTAAAGACCCAAGAATTAGCGGCGCTTCTT
1 CAAAAACGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
* ** *
62802816 CAAAAGCGCCGCTAAAGACGTAAGCATTAGCGGTGCTTCTT
1 CAAAAACGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
**
62802857 CAAAAGTGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
1 CAAAAACGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
* *
62802898 CAAAAGCGCCGCTAAAGACCCAAGCATTAGCGGCGCCTCTT
1 CAAAAACGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
* *
62802939 CAGAAACGCCGCAAAAGA-CCAAGCATTAGCGGCGCTTCTT
1 CAAAAACGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
*
62802979 CAAAAACGCCGCTAAAG-CCCTGAGCATTAGCGGCGCTTCTT
1 CAAAAACGCCGCTAAAGACCC-AAGCATTAGCGGCGCTTCTT
62803020 CAAAAACGCCGCTAAA
1 CAAAAACGCCGCTAAA
62803036 ATCCCAAAAA
Statistics
Matches: 200, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
40 38 0.19
41 162 0.81
ACGTcount: A:0.31, C:0.30, G:0.21, T:0.17
Consensus pattern (41 bp):
CAAAAACGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
Found at i:62803042 original size:122 final size:123
Alignment explanation
Indices: 62802775--62803035 Score: 402
Period size: 122 Copynumber: 2.1 Consensus size: 123
62802765 GGCGCCTTTC
* * *
62802775 CAAAAACGCCGCTAAAGACCCAAGAATTAGCGGCGCTTCTTCAAAAGCGCCGCTAAAGACGTAAG
1 CAAAAACGCCGCTAAAGACCCAAGAATTAGCGGCGCCTCTTCAAAAGCGCCGCAAAAGACGCAAG
* **
62802840 CATTAGCGGTGCTTCTTCAAAAGTGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
66 CATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
* *
62802898 CAAAAGCGCCGCTAAAGACCCAAGCATTAGCGGCGCCTCTTCAGAAA-CGCCGCAAAAGAC-CAA
1 CAAAAACGCCGCTAAAGACCCAAGAATTAGCGGCGCCTCTTCA-AAAGCGCCGCAAAAGACGCAA
*
62802961 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAG-CCCTGAGCATTAGCGGCGCTTCTT
65 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCC-AAGCATTAGCGGCGCTTCTT
62803020 CAAAAACGCCGCTAAA
1 CAAAAACGCCGCTAAA
62803036 ATCCCAAAAA
Statistics
Matches: 126, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
121 3 0.02
122 68 0.54
123 52 0.41
124 3 0.02
ACGTcount: A:0.31, C:0.30, G:0.21, T:0.17
Consensus pattern (123 bp):
CAAAAACGCCGCTAAAGACCCAAGAATTAGCGGCGCCTCTTCAAAAGCGCCGCAAAAGACGCAAG
CATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCCAAGCATTAGCGGCGCTTCTT
Found at i:62803120 original size:39 final size:39
Alignment explanation
Indices: 62803072--62803223 Score: 121
Period size: 40 Copynumber: 3.8 Consensus size: 39
62803062 TGGGCTTAGG
* *
62803072 TTTTT-GCGGCGCTTTTTGGAAAACGCCGCTAATGCTCA
1 TTTTTAGCGGCGCTTTTTAGAAAACGCCGCTAATGCTGA
* * *
62803110 TTTTTAGCGGC-ATTTTTAGAAAAGCGCCGCGAATACTTGA
1 TTTTTAGCGGCGCTTTTTAGAAAA-CGCCGCTAATGC-TGA
* * * *
62803150 TCTTTAGCAGCGCTTTTCTAG-AAGCGCCGCTAATGATTGA
1 TTTTTAGCGGCGCTTTT-TAGAAAACGCCGCTAATG-CTGA
* * **
62803190 TTTTTAGCGGTGTTTTTTATCCAAACGCCGCTAA
1 TTTTTAGCGGCGCTTTTTA-GAAAACGCCGCTAA
62803224 AAGTCTGTTT
Statistics
Matches: 88, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
38 15 0.17
39 17 0.19
40 36 0.41
41 17 0.19
42 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.35
Consensus pattern (39 bp):
TTTTTAGCGGCGCTTTTTAGAAAACGCCGCTAATGCTGA
Found at i:62816555 original size:45 final size:45
Alignment explanation
Indices: 62816491--62816591 Score: 159
Period size: 45 Copynumber: 2.2 Consensus size: 45
62816481 GTAACGGTAG
* *
62816491 CAGTAACAGTAACAGTATTCAACACACAAAGT-GCTGAATCTGTAA
1 CAGTAACAGTAACAGTATTCAACACACAAAGTATC-GAATCAGTAA
*
62816536 CAGTAACAGTAACAGTATTCGACACACAAAGTATCGAATCAGTAA
1 CAGTAACAGTAACAGTATTCAACACACAAAGTATCGAATCAGTAA
62816581 CAGTAACAGTA
1 CAGTAACAGTA
62816592 GTCGGCACAT
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
45 51 0.98
46 1 0.02
ACGTcount: A:0.44, C:0.20, G:0.16, T:0.21
Consensus pattern (45 bp):
CAGTAACAGTAACAGTATTCAACACACAAAGTATCGAATCAGTAA
Found at i:62818103 original size:16 final size:17
Alignment explanation
Indices: 62818071--62818103 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
62818061 CAATTAACCC
62818071 CTCAATTAATCTAATTTT
1 CTCAATTAA-CTAATTTT
62818089 CTCAATTAA-TAATTT
1 CTCAATTAACTAATTT
62818104 ACCTAGACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
CTCAATTAACTAATTTT
Found at i:62818757 original size:16 final size:17
Alignment explanation
Indices: 62818725--62818757 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
62818715 CAATTAACCC
62818725 CTCAATTAATCTAATTTT
1 CTCAATTAA-CTAATTTT
62818743 CTCAATTAA-TAATTT
1 CTCAATTAACTAATTT
62818758 ACCTAGACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
CTCAATTAACTAATTTT
Found at i:62818901 original size:654 final size:654
Alignment explanation
Indices: 62817646--62818956 Score: 2568
Period size: 654 Copynumber: 2.0 Consensus size: 654
62817636 ACCACTCTTC
*
62817646 ACTAAAAATGAATTGTCTAATTGTACAAATTCGGATGATGTTTCCGTTTGTTTCCTTTGAAAATA
1 ACTAAAAATGAACTGTCTAATTGTACAAATTCGGATGATGTTTCCGTTTGTTTCCTTTGAAAATA
62817711 GACTCATCAAGGATTCTAAGAATATAAATTATAACTCATAATTATTTTTTTACAATTTTTAACAA
66 GACTCATCAAGGATTCTAAGAATATAAATTATAACTCATAATTATTTTTTTACAATTTTTAACAA
62817776 TTTTCCAAAGTCAGAACAGGGGAACCCGAAATCATTCTGACATTATCTCACAAAATTTAATATAT
131 TTTTCCAAAGTCAGAACAGGGGAACCCGAAATCATTCTGACATTATCTCACAAAATTTAATATAT
62817841 CTCATGATTTAAAATTCTATTGCTTACACCGTTTCTTCTATGAGAAACTAGACTCAATAAGATTT
196 CTCATGATTTAAAATTCTATTGCTTACACCGTTTCTTCTATGAGAAACTAGACTCAATAAGATTT
*
62817906 AATTTCATATTTTATTCACCCTCTAATTCAATTCCCATAATTTTTGGTGATTTTTAAAAGTTACA
261 AATTTCATATTTTATTCACCCTCTAATTCAATTCCCACAATTTTTGGTGATTTTTAAAAGTTACA
62817971 CTACTGCTGCTGCCAAAAACTGCTTTAGTGCAAAATGTTGATTTCCATTTTGCCCCCAAATTTCA
326 CTACTGCTGCTGCCAAAAACTGCTTTAGTGCAAAATGTTGATTTCCATTTTGCCCCCAAATTTCA
*
62818036 CAGTTTATGCAATTCGGTTCTTTCTCAATTAACCCCTCAATTAATCTAATTTTCTCAATTAATAA
391 CAGTTTATGCAATTCGGTCCTTTCTCAATTAACCCCTCAATTAATCTAATTTTCTCAATTAATAA
62818101 TTTACCTAGACATTATAAGTTATTTCACAACTATTGAAATTCAGAATTTTCACATATAACCCTAA
456 TTTACCTAGACATTATAAGTTATTTCACAACTATTGAAATTCAGAATTTTCACATATAACCCTAA
62818166 CTTCAAACTCTTTTACTATTAGGTCTCAAACATTCACTTTCTATTCATTTCTCTCAATAAAACCA
521 CTTCAAACTCTTTTACTATTAGGTCTCAAACATTCACTTTCTATTCATTTCTCTCAATAAAACCA
62818231 GTATATGAAAAATTTAAAGCTCTAATTCCATGCTAAATCATCATATACTTCCAGCATGCATTCAT
586 GTATATGAAAAATTTAAAGCTCTAATTCCATGCTAAATCATCATATACTTCCAGCATGCATTCAT
62818296 AGCA
651 AGCA
62818300 ACTAAAAATGAACTGTCTAATTGTACAAATTCGGATGATGTTTCCGTTTGTTTCCTTTGAAAATA
1 ACTAAAAATGAACTGTCTAATTGTACAAATTCGGATGATGTTTCCGTTTGTTTCCTTTGAAAATA
62818365 GACTCATCAAGGATTCTAAGAATATAAATTATAACTCATAATTATTTTTTTACAATTTTTAACAA
66 GACTCATCAAGGATTCTAAGAATATAAATTATAACTCATAATTATTTTTTTACAATTTTTAACAA
62818430 TTTTCCAAAGTCAGAACAGGGGAACCCGAAATCATTCTGACATTATCTCACAAAATTTAATATAT
131 TTTTCCAAAGTCAGAACAGGGGAACCCGAAATCATTCTGACATTATCTCACAAAATTTAATATAT
*
62818495 CTCATGATTTAAAATTCTATTGCTTACACCGTTTCTTCTATGAGAAACTAGACTCAATAAGCTTT
196 CTCATGATTTAAAATTCTATTGCTTACACCGTTTCTTCTATGAGAAACTAGACTCAATAAGATTT
62818560 AATTTCATATTTTATTCACCCTCTAATTCAATTCCCACAATTTTTGGTGATTTTTAAAAGTTACA
261 AATTTCATATTTTATTCACCCTCTAATTCAATTCCCACAATTTTTGGTGATTTTTAAAAGTTACA
*
62818625 CTACTGCTGCTGCCCAAAACTGCTTTAGTGCAAAATGTTGATTTCCATTTTGCCCCCAAATTTCA
326 CTACTGCTGCTGCCAAAAACTGCTTTAGTGCAAAATGTTGATTTCCATTTTGCCCCCAAATTTCA
62818690 CAGTTTATGCAATTCGGTCCTTTCTCAATTAACCCCTCAATTAATCTAATTTTCTCAATTAATAA
391 CAGTTTATGCAATTCGGTCCTTTCTCAATTAACCCCTCAATTAATCTAATTTTCTCAATTAATAA
62818755 TTTACCTAGACATTATAAGTTATTTCACAACTATTGAAATTCAGAATTTTCACATATAACCCTAA
456 TTTACCTAGACATTATAAGTTATTTCACAACTATTGAAATTCAGAATTTTCACATATAACCCTAA
62818820 CTTCAAACTCTTTTACTATTAGGTCTCAAACATTCACTTTCTATTCATTTCTCTCAATAAAACCA
521 CTTCAAACTCTTTTACTATTAGGTCTCAAACATTCACTTTCTATTCATTTCTCTCAATAAAACCA
*
62818885 GTATATGAACAATTTAAAGCTCTAATTCCATGCTAAATCATCATATACTTCCAGCATGCATTCAT
586 GTATATGAAAAATTTAAAGCTCTAATTCCATGCTAAATCATCATATACTTCCAGCATGCATTCAT
62818950 AGCA
651 AGCA
62818954 ACT
1 ACT
62818957 TTCAACTTCT
Statistics
Matches: 651, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
654 651 1.00
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.38
Consensus pattern (654 bp):
ACTAAAAATGAACTGTCTAATTGTACAAATTCGGATGATGTTTCCGTTTGTTTCCTTTGAAAATA
GACTCATCAAGGATTCTAAGAATATAAATTATAACTCATAATTATTTTTTTACAATTTTTAACAA
TTTTCCAAAGTCAGAACAGGGGAACCCGAAATCATTCTGACATTATCTCACAAAATTTAATATAT
CTCATGATTTAAAATTCTATTGCTTACACCGTTTCTTCTATGAGAAACTAGACTCAATAAGATTT
AATTTCATATTTTATTCACCCTCTAATTCAATTCCCACAATTTTTGGTGATTTTTAAAAGTTACA
CTACTGCTGCTGCCAAAAACTGCTTTAGTGCAAAATGTTGATTTCCATTTTGCCCCCAAATTTCA
CAGTTTATGCAATTCGGTCCTTTCTCAATTAACCCCTCAATTAATCTAATTTTCTCAATTAATAA
TTTACCTAGACATTATAAGTTATTTCACAACTATTGAAATTCAGAATTTTCACATATAACCCTAA
CTTCAAACTCTTTTACTATTAGGTCTCAAACATTCACTTTCTATTCATTTCTCTCAATAAAACCA
GTATATGAAAAATTTAAAGCTCTAATTCCATGCTAAATCATCATATACTTCCAGCATGCATTCAT
AGCA
Found at i:62819400 original size:21 final size:21
Alignment explanation
Indices: 62819371--62819412 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
62819361 CTTTTTGTTC
* *
62819371 AATTAATTATCGGAACTTTAA
1 AATTAATTAACGAAACTTTAA
*
62819392 AATTTATTAACGAAACTTTAA
1 AATTAATTAACGAAACTTTAA
62819413 TACTAACTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (21 bp):
AATTAATTAACGAAACTTTAA
Found at i:62819888 original size:18 final size:18
Alignment explanation
Indices: 62819861--62819900 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
62819851 TAATTAATTT
62819861 TAATTTTTATA-TAAAAA
1 TAATTTTTATACTAAAAA
*
62819878 TAATATTTTATACTTAAAA
1 TAAT-TTTTATACTAAAAA
62819897 TAAT
1 TAAT
62819901 GAAAATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 4 0.20
18 7 0.35
19 9 0.45
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (18 bp):
TAATTTTTATACTAAAAA
Found at i:62821183 original size:24 final size:24
Alignment explanation
Indices: 62821151--62821207 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
62821141 TTTTATCAAT
* * *
62821151 TTTAAGGGTTAAACTATAATTTTC
1 TTTAGGGGTGAAACTAGAATTTTC
* *
62821175 TTTAGGGGTGAAGCTAGAATTTTT
1 TTTAGGGGTGAAACTAGAATTTTC
62821199 TTTAGGGGT
1 TTTAGGGGT
62821208 AAAATTAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.26, C:0.05, G:0.25, T:0.44
Consensus pattern (24 bp):
TTTAGGGGTGAAACTAGAATTTTC
Found at i:62821841 original size:23 final size:23
Alignment explanation
Indices: 62821815--62821906 Score: 64
Period size: 23 Copynumber: 3.9 Consensus size: 23
62821805 TTAATGATAT
62821815 TAAAAATAAATAATATAAAATTA
1 TAAAAATAAATAATATAAAATTA
* * * *
62821838 TAAAATTAGAT-TTGTAAAAATATA
1 TAAAAATAAATAATAT-AAAAT-TA
62821862 TAAATATTATAAATAATATAAAA-TA
1 TAAA-A--ATAAATAATATAAAATTA
*
62821887 TATTAAATAAATAA-ATAAAA
1 TA-AAAATAAATAATATAAAA
62821907 ATAACATGTT
Statistics
Matches: 53, Mismatches: 9, Indels: 15
0.69 0.12 0.19
Matches are distributed among these distances:
22 8 0.15
23 22 0.42
24 6 0.11
25 6 0.11
26 1 0.02
27 8 0.15
28 2 0.04
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (23 bp):
TAAAAATAAATAATATAAAATTA
Found at i:62821874 original size:9 final size:8
Alignment explanation
Indices: 62821855--62821903 Score: 53
Period size: 9 Copynumber: 5.6 Consensus size: 8
62821845 AGATTTGTAA
62821855 AAATATAT
1 AAATATAT
62821863 AAATATTAT
1 AAATA-TAT
62821872 AAATAATAT
1 AAAT-ATAT
62821881 AAAATATATT
1 -AAATATA-T
*
62821891 AAATAAAT
1 AAATATAT
62821899 AAATA
1 AAATA
62821904 AAAATAACAT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
8 11 0.31
9 19 0.53
10 6 0.17
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (8 bp):
AAATATAT
Found at i:62821885 original size:19 final size:19
Alignment explanation
Indices: 62821852--62821901 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
62821842 ATTAGATTTG
62821852 TAAA-AATATATAAATAT-T
1 TAAATAATATA-AAATATAT
62821870 ATAAATAATATAAAATATAT
1 -TAAATAATATAAAATATAT
62821890 TAAATAA-ATAAA
1 TAAATAATATAAA
62821902 TAAAAATAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.17
19 17 0.59
20 7 0.24
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
TAAATAATATAAAATATAT
Found at i:62821886 original size:27 final size:27
Alignment explanation
Indices: 62821820--62821904 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
62821810 GATATTAAAA
62821820 ATAAATAATATAAAAT-TATAAA-ATT
1 ATAAATAATATAAAATATATAAATATT
* * **
62821845 A-GATTTGTA-AAAATATATAAATATT
1 ATAAATAATATAAAATATATAAATATT
*
62821870 ATAAATAATATAAAATATATTAAATA-A
1 ATAAATAATATAAAATATA-TAAATATT
62821897 ATAAATAA
1 ATAAATAA
62821905 AAATAACATG
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
23 5 0.11
24 10 0.22
25 5 0.11
26 4 0.09
27 16 0.35
28 6 0.13
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (27 bp):
ATAAATAATATAAAATATATAAATATT
Found at i:62838056 original size:19 final size:19
Alignment explanation
Indices: 62838026--62838100 Score: 105
Period size: 19 Copynumber: 3.8 Consensus size: 19
62838016 AATCATATCT
* *
62838026 TCTAATATTGCATACCATA
1 TCTAAGATTGCATATCATA
*
62838045 TCCAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
62838066 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
62838085 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
62838101 CTTGAAGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 33 0.66
21 17 0.34
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:62852781 original size:15 final size:15
Alignment explanation
Indices: 62852732--62852787 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
62852722 TATAATATCA
* *
62852732 AATTTAATCTTTAAT
1 AATTTAATTTTTTAT
62852747 -ATTTACATTTTTTAT
1 AATTTA-ATTTTTTAT
62852762 CAATTTAATTTTTTAT
1 -AATTTAATTTTTTAT
*
62852778 AATTAAATTT
1 AATTTAATTT
62852788 AATCTTTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
14 5 0.14
15 16 0.46
16 9 0.26
17 5 0.14
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTTAATTTTTTAT
Found at i:62853438 original size:16 final size:16
Alignment explanation
Indices: 62853414--62853467 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
62853404 TTTGGTTCGC
*
62853414 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
62853430 TGTAATGGATTAGAGG
1 TGTAATGGATTAGAGG
* *
62853446 TGTAATGGAATAGATG
1 TGTAATGGATTAGAGG
62853462 TGTAAT
1 TGTAAT
62853468 AGCAAATCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.31, C:0.00, G:0.33, T:0.35
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:62853512 original size:45 final size:44
Alignment explanation
Indices: 62853446--62853536 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
62853436 GGATTAGAGG
* *
62853446 TGTAATGGAATAGATGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATCAACTGTTTGGTTGAA
* ***
62853491 TGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
62853535 TG
1 TG
62853537 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 18 0.45
45 22 0.55
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.35
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:62853718 original size:16 final size:16
Alignment explanation
Indices: 62853681--62853722 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
62853671 TTAATCATAT
*
62853681 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
62853697 TT-AAATATATTATAA
1 TTAAAATATATTATAA
62853712 TTAAAATATAT
1 TTAAAATATAT
62853723 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:62853729 original size:14 final size:15
Alignment explanation
Indices: 62853690--62853731 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
62853680 TTTAAACATA
*
62853690 ATTATTATTAAATAT
1 ATTATAATTAAATAT
62853705 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
62853719 A-TATAATTTAATA
1 ATTATAATTAAATA
62853732 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:62853828 original size:120 final size:120
Alignment explanation
Indices: 62853684--62854026 Score: 659
Period size: 120 Copynumber: 2.9 Consensus size: 120
62853674 ATCATATTTA
62853684 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
62853749 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
*
62853804 AACATAATTATTATTAAATATATTATAATTAAAAGATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
62853869 TATTCTTATATGAATTTACTCAAGTCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
*
62853924 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
62853989 TATTCTTATATGAATTTACTCAAATCATAATATATGAT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGAT
62854027 TGTTATTGCT
Statistics
Matches: 218, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 218 1.00
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:62853969 original size:14 final size:15
Alignment explanation
Indices: 62853920--62853971 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
62853910 ATAAAATATA
62853920 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
62853935 TATTAAATATATTAT
1 AATTAAATATATTAT
62853950 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
62853963 AATTTAATA
1 AATTAAATA
62853972 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:62865489 original size:21 final size:22
Alignment explanation
Indices: 62865460--62865506 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
62865450 CAGAAGGAGT
*
62865460 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
62865482 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
62865503 GAGT
1 GAGT
62865507 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:62869199 original size:21 final size:21
Alignment explanation
Indices: 62869173--62869237 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
62869163 AAAAATATAT
62869173 ATTTTATGTTGTTTAACTTGA
1 ATTTTATGTTGTTTAACTTGA
*
62869194 ATTTTA----G-TTAAATAT-A
1 ATTTTATGTTGTTTAACT-TGA
62869210 TATTTTATGTTGTTTAACTTGA
1 -ATTTTATGTTGTTTAACTTGA
62869232 ATTTTA
1 ATTTTA
62869238 GTTAAATTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 16
0.65 0.04 0.31
Matches are distributed among these distances:
16 6 0.18
17 8 0.24
21 14 0.41
22 6 0.18
ACGTcount: A:0.29, C:0.03, G:0.11, T:0.57
Consensus pattern (21 bp):
ATTTTATGTTGTTTAACTTGA
Found at i:62869208 original size:38 final size:38
Alignment explanation
Indices: 62869165--62869244 Score: 160
Period size: 38 Copynumber: 2.1 Consensus size: 38
62869155 GTAAAAGTAA
62869165 AAATATATATTTTATGTTGTTTAACTTGAATTTTAGTT
1 AAATATATATTTTATGTTGTTTAACTTGAATTTTAGTT
62869203 AAATATATATTTTATGTTGTTTAACTTGAATTTTAGTT
1 AAATATATATTTTATGTTGTTTAACTTGAATTTTAGTT
62869241 AAAT
1 AAAT
62869245 TACCTATAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.34, C:0.03, G:0.10, T:0.54
Consensus pattern (38 bp):
AAATATATATTTTATGTTGTTTAACTTGAATTTTAGTT
Found at i:62871150 original size:12 final size:13
Alignment explanation
Indices: 62871124--62871148 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62871114 TTATGGTTAT
62871124 TATTATAAAAAAA
1 TATTATAAAAAAA
62871137 TATTATAAAAAA
1 TATTATAAAAAA
62871149 TAATAAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TATTATAAAAAAA
Found at i:62873165 original size:27 final size:25
Alignment explanation
Indices: 62873113--62873165 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 25
62873103 TAATGTATTC
* *
62873113 AAATAATGAATTAATAATATTTTAA
1 AAATAATGAATGAATAATATTATAA
*
62873138 AAATAGATGAATGGAATTATATTATAA
1 AAATA-ATGAAT-GAATAATATTATAA
62873165 A
1 A
62873166 TTAAATATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 6 0.26
27 12 0.52
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (25 bp):
AAATAATGAATGAATAATATTATAA
Found at i:62874961 original size:14 final size:15
Alignment explanation
Indices: 62874942--62874970 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
62874932 GATCGCCCTA
62874942 TATTTTTTT-TTTTG
1 TATTTTTTTCTTTTG
62874956 TATTTTTTTCTTTTG
1 TATTTTTTTCTTTTG
62874971 ATGTATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.07, C:0.03, G:0.07, T:0.83
Consensus pattern (15 bp):
TATTTTTTTCTTTTG
Found at i:62874964 original size:15 final size:17
Alignment explanation
Indices: 62874944--62874980 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
62874934 TCGCCCTATA
62874944 TTTTTT-TTTT-TGTAT
1 TTTTTTCTTTTATGTAT
62874959 TTTTTTCTTTTGATGTAT
1 TTTTTTCTTTT-ATGTAT
62874977 TTTT
1 TTTT
62874981 AAAAATAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 6 0.32
16 4 0.21
18 9 0.47
ACGTcount: A:0.08, C:0.03, G:0.08, T:0.81
Consensus pattern (17 bp):
TTTTTTCTTTTATGTAT
Found at i:62887025 original size:35 final size:35
Alignment explanation
Indices: 62886986--62887055 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
62886976 CAGCTAATGA
*
62886986 AATGCTTGGT-TACTTGCATGTTACAGCTGTGTTGC
1 AATGCTTGGTAT-CTTGCATGCTACAGCTGTGTTGC
* *
62887021 AATGCTTGGTATCTTGCATGCTGCTGCTGTGTTGC
1 AATGCTTGGTATCTTGCATGCTACAGCTGTGTTGC
62887056 CACCATTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 30 0.97
36 1 0.03
ACGTcount: A:0.14, C:0.19, G:0.27, T:0.40
Consensus pattern (35 bp):
AATGCTTGGTATCTTGCATGCTACAGCTGTGTTGC
Found at i:62888201 original size:21 final size:21
Alignment explanation
Indices: 62888175--62888230 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
62888165 AACAGCGGTG
*
62888175 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
*
62888196 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
62888217 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
62888231 AACAATGTGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.25, C:0.09, G:0.38, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:62890444 original size:15 final size:15
Alignment explanation
Indices: 62890424--62890466 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
62890414 TATATATATA
62890424 TATTCCATTCCATAC
1 TATTCCATTCCATAC
62890439 TATTCCATGT-CATAC
1 TATTCCAT-TCCATAC
*
62890454 CATTCCATTCCAT
1 TATTCCATTCCAT
62890467 TTTATCAAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 1 0.04
15 23 0.92
16 1 0.04
ACGTcount: A:0.26, C:0.33, G:0.02, T:0.40
Consensus pattern (15 bp):
TATTCCATTCCATAC
Found at i:62891548 original size:51 final size:50
Alignment explanation
Indices: 62891364--62891813 Score: 379
Period size: 51 Copynumber: 8.9 Consensus size: 50
62891354 ACTATTATCA
* * * *
62891364 TTCGATACACGTAGTAGCCTTCACATAGTACTACATACGTGATC-AATTT
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGTT
* *
62891413 TTACGGTTCACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAGTT
1 TT-CGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGTT
* ** * *
62891463 TTACGGTTCACGTAGTAGCCTTCACATAAAACTACATACGTGACTAAAGCTT
1 TT-CGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAG-TT
* * * *
62891515 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCA-TT
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGTT
** * * *
62891565 TATCAATTCACGTAGTAGCCTTCACAAAGTACTACACGCGTGACCAAAGTT
1 T-TCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGTT
** * * * * *
62891616 TCTCGGTACATATTGTAGCCTTCACTTAGTACTACGCATGTGACCATTA-TT
1 T-TCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGTT
* * * * *
62891667 TACCGATTCACGTAGTAGCCTTTACACAGTACTACACACGTGACCAAAGCTT
1 T-TCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAG-TT
* * * * * ***
62891719 CTCGGTACACATTGTAGCCTTCACTTAGTACTACACATGTGACCTTTCG-T
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAAGTT
* * * *
62891769 TCCAGTACACGTAGTAGCCTACACATAGTACTACACACGAGACCA
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCA
62891814 TCACTTTCAC
Statistics
Matches: 315, Mismatches: 76, Indels: 20
0.77 0.18 0.05
Matches are distributed among these distances:
49 2 0.01
50 124 0.39
51 180 0.57
52 9 0.03
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (50 bp):
TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGTT
Found at i:62891599 original size:102 final size:101
Alignment explanation
Indices: 62891366--62891813 Score: 485
Period size: 102 Copynumber: 4.4 Consensus size: 101
62891356 TATTATCATT
* * * * * * *
62891366 CGATACACGTAGTAGCCTTCACATAGTACTACATACGTGATC-AA-TTTTTACGGTTCACGTAGT
1 CGATTCACGTAGTAGCCTTCACAAAGTACTACACACGTGACCAAAGCTTTT-CGGTACACATAGT
* * * ***
62891429 AGCCTTCACATAGTACTACACACGTGATCAAGTTTTA
65 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* * * *
62891466 CGGTTCACGTAGTAGCCTTCACATAA-AACTACATACGTGACTAAAGCTTTTCGGTACACATAGT
1 CGATTCACGTAGTAGCCTTCACA-AAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
62891530 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
65 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* * * *
62891567 TCAATTCACGTAGTAGCCTTCACAAAGTACTACACGCGTGACCAAAG-TTTCTCGGTACATATTG
1 -CGATTCACGTAGTAGCCTTCACAAAGTACTACACACGTGACCAAAGCTTT-TCGGTACACATAG
* *
62891631 TAGCCTTCACTTAGTACTACGCATGTGACCATTATTTA
64 TAGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* * * *
62891669 CCGATTCACGTAGTAGCCTTTACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
1 -CGATTCACGTAGTAGCCTTCACAAAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
* *
62891734 AGCCTTCACTTAGTACTACACATGTGACCTTTC-GTT-
65 AGCCTTCACTTAGTACTACACATGTGACC-ATCATTTA
* * * * *
62891770 CCAGTACACGTAGTAGCCTACACATAGTACTACACACGAGACCA
1 CGA-TTCACGTAGTAGCCTTCACAAAGTACTACACACGTGACCA
62891814 TCACTTTCAC
Statistics
Matches: 297, Mismatches: 42, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
100 36 0.12
101 85 0.29
102 173 0.58
103 3 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (101 bp):
CGATTCACGTAGTAGCCTTCACAAAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGTA
GCCTTCACTTAGTACTACACATGTGACCATCATTTA
Found at i:62896086 original size:13 final size:12
Alignment explanation
Indices: 62896062--62896094 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
62896052 TTATGGTTAT
62896062 TATTATAAAAAA
1 TATTATAAAAAA
62896074 TATTATAAAAAA
1 TATTATAAAAAA
*
62896086 -ATAATAAAA
1 TATTATAAAA
62896095 CATAAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 8 0.40
12 12 0.60
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (12 bp):
TATTATAAAAAA
Found at i:62896536 original size:13 final size:13
Alignment explanation
Indices: 62896501--62896541 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
62896491 GTATAAAATT
62896501 TATAT-AAAT-TA
1 TATATCAAATATA
* *
62896512 TCTATCATATATA
1 TATATCAAATATA
62896525 TATATCAAATATA
1 TATATCAAATATA
62896538 TATA
1 TATA
62896542 CTAAAGTAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
11 4 0.17
12 3 0.12
13 17 0.71
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (13 bp):
TATATCAAATATA
Found at i:62898123 original size:27 final size:25
Alignment explanation
Indices: 62898071--62898123 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 25
62898061 TAATGTATTC
* *
62898071 AAATAATGAATTAATAATATTTTAA
1 AAATAATGAATGAATAATATTATAA
*
62898096 AAATAGATGAATGGAATTATATTATAA
1 AAATA-ATGAAT-GAATAATATTATAA
62898123 A
1 A
62898124 TTAAATATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 6 0.26
27 12 0.52
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (25 bp):
AAATAATGAATGAATAATATTATAA
Done.