Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 212 of 226
Found at i:63231035 original size:3 final size:3
Alignment explanation
Indices: 63231027--63231061 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
63231017 GAATTAGTCC
*
63231027 TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
63231062 CCTATTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:63231062 original size:12 final size:12
Alignment explanation
Indices: 63231026--63231067 Score: 66
Period size: 12 Copynumber: 3.4 Consensus size: 12
63231016 TGAATTAGTC
63231026 CTATTATTATTA
1 CTATTATTATTA
*
63231038 TTATTATTATTA
1 CTATTATTATTA
63231050 CTATTATTATTA
1 CTATTATTATTA
63231062 CCTATT
1 -CTATT
63231068 TATTTATACT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
12 22 0.81
13 5 0.19
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.60
Consensus pattern (12 bp):
CTATTATTATTA
Found at i:63243897 original size:50 final size:50
Alignment explanation
Indices: 63243825--63244200 Score: 239
Period size: 50 Copynumber: 7.6 Consensus size: 50
63243815 GCAGCGGAGC
* *
63243825 AGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTGCAATTTAAA
1 AGATCGAAGCCACAACAGCGAATCTCACTTCCCCGACATTGCAATTTAAA
* * * * * **** **
63243875 GGATCGAAGCCACAGCAGCGAATCTTACTT--CTGGCGA-TGCAGCAGAGC
1 AGATCGAAGCCACAACAGCGAATCTCACTTCCCCGAC-ATTGCAATTTAAA
* *
63243923 AGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTGCAATTTAAA
1 AGATCGAAGCCACAACAGCGAATCTCACTTCCCCGACATTGCAATTTAAA
* * * * * * ***** **
63243973 AAATCGAAGCCACAACGGTGAATCTTACTT--CTGGCGA-TGCGGCGGAGC
1 AGATCGAAGCCACAACAGCGAATCTCACTTCCCCGAC-ATTGCAATTTAAA
* * * *
63244021 AGATTGAAGCTACAACAGCGAATCTCACTTCCCCTACATTGAAATTTAAA
1 AGATCGAAGCCACAACAGCGAATCTCACTTCCCCGACATTGCAATTTAAA
* * * * * * * ** *
63244071 AAATCGAAGCCACAACGGTGAATCTTACTT--CTGGCGA-TGCAGTGGAAC
1 AGATCGAAGCCACAACAGCGAATCTCACTTCCCCGAC-ATTGCAATTTAAA
* * *
63244119 AGATTGAAGCTACAACGGCGAATCTCACTTCCCCGACATTGCAATTTAAA
1 AGATCGAAGCCACAACAGCGAATCTCACTTCCCCGACATTGCAATTTAAA
* *
63244169 AGATCGAAGCCACAACGGCGAATCTTACTTCC
1 AGATCGAAGCCACAACAGCGAATCTCACTTCC
63244201 AGGCGACGCA
Statistics
Matches: 228, Mismatches: 86, Indels: 24
0.67 0.25 0.07
Matches are distributed among these distances:
48 97 0.43
49 6 0.03
50 125 0.55
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.22
Consensus pattern (50 bp):
AGATCGAAGCCACAACAGCGAATCTCACTTCCCCGACATTGCAATTTAAA
Found at i:63243934 original size:98 final size:98
Alignment explanation
Indices: 63243765--63244227 Score: 746
Period size: 98 Copynumber: 4.7 Consensus size: 98
63243755 AAACCATAGT
*
63243765 TTGCAATTTAAAAGATCGAAGCCACAGCGGCGAATCTTACTTCTGGCGATGCAGCGGAGCAGATT
1 TTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTCTGGCGATGCAGCGGAGCAGATT
63243830 GAAGCTACAACAGCGAATCTCACTTCCCCGACA
66 GAAGCTACAACAGCGAATCTCACTTCCCCGACA
* * * *
63243863 TTGCAATTTAAAGGATCGAAGCCACAGCAGCGAATCTTACTTCTGGCGATGCAGCAGAGCAGATT
1 TTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTCTGGCGATGCAGCGGAGCAGATT
63243928 GAAGCTACAACAGCGAATCTCACTTCCCCGACA
66 GAAGCTACAACAGCGAATCTCACTTCCCCGACA
* * *
63243961 TTGCAATTTAAAAAATCGAAGCCACAACGGTGAATCTTACTTCTGGCGATGCGGCGGAGCAGATT
1 TTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTCTGGCGATGCAGCGGAGCAGATT
*
63244026 GAAGCTACAACAGCGAATCTCACTTCCCCTACA
66 GAAGCTACAACAGCGAATCTCACTTCCCCGACA
* * * * *
63244059 TTGAAATTTAAAAAATCGAAGCCACAACGGTGAATCTTACTTCTGGCGATGCAGTGGAACAGATT
1 TTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTCTGGCGATGCAGCGGAGCAGATT
*
63244124 GAAGCTACAACGGCGAATCTCACTTCCCCGACA
66 GAAGCTACAACAGCGAATCTCACTTCCCCGACA
* * **
63244157 TTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGACGCAGCGGAATAGAT
1 TTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTT-CTGGCGATGCAGCGGAGCAGAT
63244222 TGAAGC
65 TGAAGC
63244228 CGCAATGGCG
Statistics
Matches: 340, Mismatches: 24, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
98 316 0.93
99 24 0.07
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.21
Consensus pattern (98 bp):
TTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTCTGGCGATGCAGCGGAGCAGATT
GAAGCTACAACAGCGAATCTCACTTCCCCGACA
Found at i:63244136 original size:48 final size:48
Alignment explanation
Indices: 63243777--63244149 Score: 189
Period size: 48 Copynumber: 7.6 Consensus size: 48
63243767 GCAATTTAAA
* * * * *
63243777 AGATCGAAGCCACAGCGGCGAATCTTACTTCTGGCGATGCAGCGGAGC
1 AGATCGAAGCCACAACAGCGAATCTCACTTCTGGCGATGCAGTGGAAC
* * ** * **
63243825 AGATTGAAGCTACAACAGCGAATCTCACTTC-CCCGACATTGCAATTTAA-
1 AGATCGAAGCCACAACAGCGAATCTCACTTCTGGCG--A-TGCAGTGGAAC
* * ** *
63243874 AGGATCGAAGCCACAGCAGCGAATCTTACTTCTGGCGATGCAGCAGAGC
1 A-GATCGAAGCCACAACAGCGAATCTCACTTCTGGCGATGCAGTGGAAC
* * ** * ** *
63243923 AGATTGAAGCTACAACAGCGAATCTCACTTC-CCCGACATTGCAATTTAAA
1 AGATCGAAGCCACAACAGCGAATCTCACTTCTGGCG--A-TGCAGTGGAAC
* * * * * * *
63243973 AAATCGAAGCCACAACGGTGAATCTTACTTCTGGCGATGCGGCGGAGC
1 AGATCGAAGCCACAACAGCGAATCTCACTTCTGGCGATGCAGTGGAAC
* * * * * ** *
63244021 AGATTGAAGCTACAACAGCGAATCTCACTTCCCCT-AC-ATTGAAATTTAAA
1 AGATCGAAGCCACAACAGCGAATCTCACTT---CTGGCGA-TGCAGTGGAAC
* * * *
63244071 AAATCGAAGCCACAACGGTGAATCTTACTTCTGGCGATGCAGTGGAAC
1 AGATCGAAGCCACAACAGCGAATCTCACTTCTGGCGATGCAGTGGAAC
* * *
63244119 AGATTGAAGCTACAACGGCGAATCTCACTTC
1 AGATCGAAGCCACAACAGCGAATCTCACTTC
63244150 CCCGACATTG
Statistics
Matches: 227, Mismatches: 82, Indels: 32
0.67 0.24 0.09
Matches are distributed among these distances:
47 6 0.03
48 118 0.52
49 8 0.04
50 89 0.39
51 6 0.03
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.21
Consensus pattern (48 bp):
AGATCGAAGCCACAACAGCGAATCTCACTTCTGGCGATGCAGTGGAAC
Found at i:63245544 original size:3 final size:3
Alignment explanation
Indices: 63245536--63245567 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
63245526 GAATTAGTCC
63245536 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
63245568 CCTATTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:63247029 original size:17 final size:18
Alignment explanation
Indices: 63247004--63247041 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
63246994 ACTTTAATTA
63247004 AATTATTTAAA-ATAAAT
1 AATTATTTAAATATAAAT
*
63247021 AATTTTTTAAATTATAAAT
1 AATTATTTAAA-TATAAAT
63247040 AA
1 AA
63247042 ACATCTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 10 0.56
19 8 0.44
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AATTATTTAAATATAAAT
Found at i:63250600 original size:21 final size:19
Alignment explanation
Indices: 63250576--63250614 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
63250566 ATTTGCCTCC
63250576 CTATCTAAGACCATGTTTCCT
1 CTATCTAAG-CCAT-TTTCCT
63250597 CTATCTAAGCCATTTTCC
1 CTATCTAAGCCATTTTCC
63250615 GGAGGATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 4 0.22
21 9 0.50
ACGTcount: A:0.23, C:0.31, G:0.08, T:0.38
Consensus pattern (19 bp):
CTATCTAAGCCATTTTCCT
Found at i:63251245 original size:12 final size:12
Alignment explanation
Indices: 63251228--63251252 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63251218 AGTTACCTAG
63251228 TGATATAGGTAA
1 TGATATAGGTAA
63251240 TGATATAGGTAA
1 TGATATAGGTAA
63251252 T
1 T
63251253 CTCGTCCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.24, T:0.36
Consensus pattern (12 bp):
TGATATAGGTAA
Found at i:63254009 original size:13 final size:13
Alignment explanation
Indices: 63253991--63254015 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63253981 ATCACACATG
63253991 ATAATATATGTAT
1 ATAATATATGTAT
63254004 ATAATATATGTA
1 ATAATATATGTA
63254016 GAAGATGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
ATAATATATGTAT
Found at i:63262185 original size:17 final size:18
Alignment explanation
Indices: 63262154--63262187 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
63262144 AATTTAATTT
63262154 TAATTAAATTATTTAAAA
1 TAATTAAATTATTTAAAA
*
63262172 TAATT-AATTTTTTAAA
1 TAATTAAATTATTTAAA
63262188 TTATAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATTAAATTATTTAAAA
Found at i:63262259 original size:27 final size:25
Alignment explanation
Indices: 63262222--63262295 Score: 78
Period size: 25 Copynumber: 2.9 Consensus size: 25
63262212 TTTACAAATT
* * *
63262222 TTAATCATTTTGTTTTTTTT-CATAAG
1 TTAAT-ATTTT-TTTTTTTTGTACAAC
*
63262248 TTAATATTTTTTATTTTTGTACAAC
1 TTAATATTTTTTTTTTTTGTACAAC
*
63262273 TTAATATTTTTTATTTTTGTACA
1 TTAATATTTTTTTTTTTTGTACA
63262296 TCCAATTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
24 7 0.16
25 31 0.72
26 5 0.12
ACGTcount: A:0.26, C:0.07, G:0.05, T:0.62
Consensus pattern (25 bp):
TTAATATTTTTTTTTTTTGTACAAC
Found at i:63263132 original size:15 final size:16
Alignment explanation
Indices: 63263112--63263148 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
63263102 ACAAAATCAA
63263112 ATAAAA-TTACATAAT
1 ATAAAAGTTACATAAT
*
63263127 ATAAAAGTTACATTAT
1 ATAAAAGTTACATAAT
63263143 ATAAAA
1 ATAAAA
63263149 ATTAAATGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.32
Consensus pattern (16 bp):
ATAAAAGTTACATAAT
Found at i:63263397 original size:19 final size:19
Alignment explanation
Indices: 63263373--63264446 Score: 262
Period size: 19 Copynumber: 55.3 Consensus size: 19
63263363 ATTATAAAAT
63263373 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
63263392 AATTACAATATTCATACAAACA
1 AATTACAATATTCATAC--A-A
63263414 ATATTACAATATTCATACAA
1 A-ATTACAATATTCATACAA
63263434 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
* *
63263453 AATTACAA-AAT--TACAG
1 AATTACAATATTCATACAA
* **
63263469 TATT-C-ATATAAAATTACAA
1 AATTACAATAT-TCA-TACAA
63263488 AATTACAATATTCATACAAACA
1 AATTACAATATTCATAC--A-A
63263510 ATATTACAATATTCATACAA
1 A-ATTACAATATTCATACAA
*
63263530 AATTACAA-AAT--TACAA
1 AATTACAATATTCATACAA
* **
63263546 TATT-C-ATATAAAATTACAA
1 AATTACAATAT-TCA-TACAA
63263565 AATTACAATATTCATACAAACA
1 AATTACAATATTCATAC--A-A
63263587 ATATTACAATATTCATACAA
1 A-ATTACAATATTCATACAA
*
63263607 AATTACAA-AAT--TACAA
1 AATTACAATATTCATACAA
* **
63263623 TATT-C-ATATAAAATTACAA
1 AATTACAATAT-TCA-TACAA
63263642 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
* * *
63263661 AATTATAAAATTACAATATTCAT
1 AATTACAATATT-C-ATA--CAA
* *
63263684 AA--A-AATACTAAT-CAA
1 AATTACAATATTCATACAA
**
63263699 AA--AC--TATAAATACAA
1 AATTACAATATTCATACAA
*
63263714 AATT---A-ATT-ATAAAA
1 AATTACAATATTCATACAA
*
63263728 TAATTACACTATTCATACAA
1 -AATTACAATATTCATACAA
63263748 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
* *
63263767 AA-TAC--TAATCA-AAAA
1 AATTACAATATTCATACAA
*
63263782 ATATAAATACAAAATTAATT-ATAAAA
1 A-AT---TAC--AA-T-ATTCATACAA
63263808 TAATTACAATATTCATACAA
1 -AATTACAATATTCATACAA
63263828 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
* *
63263847 AA-TACTAATCA--AAAACTATA
1 AATTAC-AAT-ATTCATAC-A-A
*
63263867 AA-TACAAAATTAATT-ATAAAA
1 AATTAC--AA-T-ATTCATACAA
63263888 TAATTACAATATTCATACAA
1 -AATTACAATATTCATACAA
63263908 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
* *
63263927 AATACTAATCAAAAACTATAAGTACAA
1 AAT--T-A-C-AATA-T-TCA-TACAA
*
63263954 AATT---A-ATT-ATAAAA
1 AATTACAATATTCATACAA
*
63263968 TAATTACACTATTCATACAAAATTACAA
1 -AATTACA--A-T-ATTC---A-TACAA
63263996 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
* *
63264015 AATACTAATCAAAAACTATAAGTACAA
1 AAT--T-A-C-AATA-T-TCA-TACAA
*
63264042 AATT---A-ATT-ATAAAA
1 AATTACAATATTCATACAA
*
63264056 TAATTACACTATTCATACAA
1 -AATTACAATATTCATACAA
*
63264076 AATTACAA-AAT--TACAA
1 AATTACAATATTCATACAA
* * *
63264092 TATTCATACAAAATAC-TA-ATCA
1 -AAT--TACAATATTCATACA--A
**
63264114 AA--A-AATATAAATACAA
1 AATTACAATATTCATACAA
*
63264130 AATT---A-ATT-ATAAAA
1 AATTACAATATTCATACAA
*
63264144 TAATTAAAATATTCATACAA
1 -AATTACAATATTCATACAA
63264164 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
* *
63264183 AA-TACTAATCA--AAAACTATA
1 AATTAC-AAT-ATTCATAC-A-A
*
63264203 AA-TACAAAATTAATT-ATAAAA
1 AATTAC--AA-T-ATTCATACAA
63264224 TAATTACAATATTCATACAA
1 -AATTACAATATTCATACAA
*
63264244 AATTATAATATTCATATAAAATTACAA
1 AATTACAATATTC-------A-TACAA
63264271 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
* *
63264290 AATTACAATATTAATTATAAAA
1 AATTACAATA-T--TCATACAA
63264312 TAATTACAATATTCATACAA
1 -AATTACAATATTCATACAA
*
63264332 AATTACAATATTCATATAA
1 AATTACAATATTCATACAA
*
63264351 AATTACAA-AAT--TACAA
1 AATTACAATATTCATACAA
* *
63264367 TATT---A-ATT-ATAAAA
1 AATTACAATATTCATACAA
63264381 TAATTACAATATTCATACAA
1 -AATTACAATATTCATACAA
63264401 AATTACAATATTCATACAAA
1 AATTACAATATTCATAC-AA
*
63264421 AAGTTACAATATACATACAA
1 AA-TTACAATATTCATACAA
63264441 AATTAC
1 AATTAC
63264447 CCATTGGCAC
Statistics
Matches: 804, Mismatches: 93, Indels: 316
0.66 0.08 0.26
Matches are distributed among these distances:
13 3 0.00
14 30 0.04
15 45 0.06
16 52 0.06
17 7 0.01
18 32 0.04
19 309 0.38
20 92 0.11
21 53 0.07
22 26 0.03
23 82 0.10
24 7 0.01
25 7 0.01
26 13 0.02
27 42 0.05
28 4 0.00
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (19 bp):
AATTACAATATTCATACAA
Found at i:63263424 original size:8 final size:8
Alignment explanation
Indices: 63263411--63263653 Score: 92
Period size: 8 Copynumber: 31.0 Consensus size: 8
63263401 ATTCATACAA
63263411 ACAATATT
1 ACAATATT
63263419 ACAATATTCAT
1 ACAATA-T--T
*
63263430 ACAAAATT
1 ACAATATT
63263438 ACAATATTCAT
1 ACAATA-T--T
*
63263449 ACAAAATT
1 ACAATATT
*
63263457 ACAAAATT
1 ACAATATT
*
63263465 ACAGTATT
1 ACAATATT
63263473 -C-ATA-T
1 ACAATATT
63263478 A-AA-ATT
1 ACAATATT
*
63263484 ACAAAATT
1 ACAATATT
63263492 ACAATATT
1 ACAATATT
**
63263500 -C-ATACAA
1 ACAATA-TT
63263507 ACAATATT
1 ACAATATT
63263515 ACAATATTCAT
1 ACAATA-T--T
*
63263526 ACAAAATT
1 ACAATATT
*
63263534 ACAAAATT
1 ACAATATT
63263542 ACAATATT
1 ACAATATT
63263550 -C-ATA-T
1 ACAATATT
63263555 A-AA-ATT
1 ACAATATT
*
63263561 ACAAAATT
1 ACAATATT
63263569 ACAATATT
1 ACAATATT
**
63263577 -C-ATACAA
1 ACAATA-TT
63263584 ACAATATT
1 ACAATATT
63263592 ACAATATTCAT
1 ACAATA-T--T
*
63263603 ACAAAATT
1 ACAATATT
*
63263611 ACAAAATT
1 ACAATATT
63263619 ACAATATT
1 ACAATATT
63263627 -C-ATA-T
1 ACAATATT
63263632 A-AA-ATT
1 ACAATATT
*
63263638 ACAAAATT
1 ACAATATT
63263646 ACAATATT
1 ACAATATT
63263654 CATACAAAAT
Statistics
Matches: 181, Mismatches: 21, Indels: 66
0.68 0.08 0.25
Matches are distributed among these distances:
5 6 0.03
6 23 0.13
7 11 0.06
8 103 0.57
9 10 0.06
10 4 0.02
11 24 0.13
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (8 bp):
ACAATATT
Found at i:63263459 original size:27 final size:27
Alignment explanation
Indices: 63263429--63263689 Score: 396
Period size: 27 Copynumber: 10.0 Consensus size: 27
63263419 ACAATATTCA
63263429 TACAAAATTACAATATTCATACAAAAT
1 TACAAAATTACAATATTCATACAAAAT
* *
63263456 TACAAAATTACAGTATTCATATAAAAT
1 TACAAAATTACAATATTCATACAAAAT
63263483 TACAAAATTACAATATTCATAC--AA-
1 TACAAAATTACAATATTCATACAAAAT
*
63263507 -ACAATATTACAATATTCATACAAAAT
1 TACAAAATTACAATATTCATACAAAAT
*
63263533 TACAAAATTACAATATTCATATAAAAT
1 TACAAAATTACAATATTCATACAAAAT
63263560 TACAAAATTACAATATTCATAC--AA-
1 TACAAAATTACAATATTCATACAAAAT
*
63263584 -ACAATATTACAATATTCATACAAAAT
1 TACAAAATTACAATATTCATACAAAAT
*
63263610 TACAAAATTACAATATTCATATAAAAT
1 TACAAAATTACAATATTCATACAAAAT
63263637 TACAAAATTACAATATTCATACAAAAT
1 TACAAAATTACAATATTCATACAAAAT
*
63263664 TATAAAATTACAATATTCATA-AAAAT
1 TACAAAATTACAATATTCATACAAAAT
63263690 ACTAATCAAA
Statistics
Matches: 213, Mismatches: 13, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
23 40 0.19
25 8 0.04
26 5 0.02
27 160 0.75
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.31
Consensus pattern (27 bp):
TACAAAATTACAATATTCATACAAAAT
Found at i:63263473 original size:88 final size:86
Alignment explanation
Indices: 63263373--63264446 Score: 469
Period size: 88 Copynumber: 12.0 Consensus size: 86
63263363 ATTATAAAAT
63263373 AATTACAATATTCATACAAAATTACAATATTCATACAAACAATATTACAATATTCATACAAAATT
1 AATTACAATATTCATACAAAATTACAATATTCATA-AAA-AATATTACAATATTCATACAAAATT
63263438 ACAATATTCATACAAAATTACAA
64 ACAATATTCATACAAAATTACAA
*
63263461 AATTACAGTATTCATATAAAATTACAAAATTACAATATTCATACAAACAATATTACAATATTCAT
1 AATTACA--A-T-AT-T--CA-TACAAAATTACAATATTCATA-AAA-AATATTACAATA-T--T
*
63263526 ACAAAATTACAAAATTACAATATTCATATAAAATTACAA
53 -C---A-TACAAAATTACAATATTCATACAAAATTACAA
*
63263565 AATTACAATATTCATACAAACAATATTACAATATTCATACAAAATTACAAAATTACAATATTCAT
1 AATTACAATATTCATAC--A-AA-ATTACAATATTCAT---AAA--A-AATATTACAATATTC--
*
63263630 ATAAAATTACAAAATTACAATATTCATACAAAATTATAA
54 -----A-TACAAAATTACAATATTCATACAAAATTACAA
* * * *
63263669 AATTACAATATTCATA-AAAA-TAC--TAATCA-AAAACTATAAATACAAAATTAATT-ATAAAA
1 AATTACAATATTCATACAAAATTACAATATTCATAAAA-AAT-ATTAC--AA-T-ATTCATACAA
*
63263728 TAATTACACTATTCATACAAAATTACAA
60 -AATTACAATATTCATACAAAATTACAA
* * * * *
63263756 TATTCATACAAAATACTAATCA-AAAAATATAAATACAAAATTAATTATAAAATAATTACAATAT
1 -AAT--TAC--AATA-T--TCATACAAA-AT---TACAATATTCA-TAAAAAAT-ATTACAATAT
*
63263820 TCATACAAAATTACAATATTCATACAAAA-TAC-T
52 TCATACAAAATTACAATATTCATACAAAATTACAA
* * ** *
63263853 AATCAAAAACTATAAATACAAAATT---A-ATT-ATAAAATA-ATTACAATATTCATACAAAATT
1 AAT-TACAA-TATTCATACAAAATTACAATATTCATAAAAAATATTACAATATTCATACAAAATT
*
63263912 ACAATATTCATACAAAA-TAC-T
64 ACAATATTCATACAAAATTACAA
* * * * *
63263933 AATCA-AAAACTATAAGTACAAAATT---A-ATT-ATAAAATA-ATTACACTATTCATACAAAAT
1 AATTACAATA-T-TCA-TACAAAATTACAATATTCATAAAAAATATTACAATATTCATACAAAAT
* *
63263991 TACAA-AAT--TACAATATTCATACAA
63 TACAATATTCATACAA-AAT--TACAA
* * * * * * * *
63264015 AA-TACTAATCA--AAAACTATAAGTACAAAATTAATTATAAAATAATTACACTATTCATACAAA
1 AATTAC-AAT-ATTCATAC-AAAATTACAATATTCA-TAAAAAAT-ATTACAATATTCATACAAA
* *
63264077 ATTACAA-AAT--TACAATATTCATACAA
61 ATTACAATATTCATACAA-AAT--TACAA
* * * * * *
63264103 AA-TAC--TAATCA-AAAAATATAAATACAAAATTAATTATAAAATAATTAAAATATTCATACAA
1 AATTACAATATTCATACAAA-AT---TACAATATTCA-TAAAAAAT-ATTACAATATTCATACAA
*
63264164 AATTACAATATTCATACAAAA-TAC-T
60 AATTACAATATTCATACAAAATTACAA
* * ** *
63264189 AATCAAAAACTATAAATACAAAATT---A-ATT-ATAAAATA-ATTACAATATTCATACAAAATT
1 AAT-TACAA-TATTCATACAAAATTACAATATTCATAAAAAATATTACAATATTCATACAAAATT
* *
63264248 ATAATATTCATATAAAATTACAA
64 ACAATATTCATACAAAATTACAA
* *
63264271 AATTACAATATTCATACAAAATTACAATATTAATTATAAAATAATTACAATATTCATACAAAATT
1 AATTACAATATTCATACAAAATTACAATATTCA-TAAAAAAT-ATTACAATATTCATACAAAATT
*
63264336 ACAATATTCATATAAAATTACAA
64 ACAATATTCATACAAAATTACAA
* * *
63264359 AATTACAATATTAATTATAAAATAATTACAATATTCAT-ACAAA-ATTACAATATTCATACAAAA
1 AATTACAATA-T--TCATACAA-AATTACAATATTCATAAAAAATATTACAATATTCATAC-AAA
*
63264422 AGTTACAATATACATACAAAATTAC
61 A-TTACAATATTCATACAAAATTAC
63264447 CCATTGGCAC
Statistics
Matches: 798, Mismatches: 81, Indels: 212
0.73 0.07 0.19
Matches are distributed among these distances:
77 6 0.01
78 4 0.01
79 7 0.01
80 147 0.18
81 10 0.01
82 15 0.02
83 6 0.01
84 16 0.02
85 7 0.01
86 17 0.02
87 29 0.04
88 177 0.22
89 7 0.01
90 32 0.04
91 25 0.03
92 30 0.04
93 7 0.01
94 4 0.01
95 11 0.01
96 49 0.06
97 2 0.00
98 7 0.01
99 28 0.04
100 29 0.04
101 5 0.01
102 6 0.01
103 10 0.01
104 105 0.13
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (86 bp):
AATTACAATATTCATACAAAATTACAATATTCATAAAAAATATTACAATATTCATACAAAATTAC
AATATTCATACAAAATTACAA
Found at i:63263524 original size:77 final size:77
Alignment explanation
Indices: 63263387--63263661 Score: 467
Period size: 77 Copynumber: 3.7 Consensus size: 77
63263377 ACAATATTCA
* *
63263387 TACAAAATTACAATATTC--ATACAA--ACAATATTACAATATTCATAC--A-AA-ATTACAATA
1 TACAAAATTACAATATTCATATAAAATTACAAAATTACAATATTCATACAAACAATATTACAATA
63263444 TTCATACAAAAT
66 TTCATACAAAAT
*
63263456 TACAAAATTACAGTATTCATATAAAATTACAAAATTACAATATTCATACAAACAATATTACAATA
1 TACAAAATTACAATATTCATATAAAATTACAAAATTACAATATTCATACAAACAATATTACAATA
63263521 TTCATACAAAAT
66 TTCATACAAAAT
63263533 TACAAAATTACAATATTCATATAAAATTACAAAATTACAATATTCATACAAACAATATTACAATA
1 TACAAAATTACAATATTCATATAAAATTACAAAATTACAATATTCATACAAACAATATTACAATA
63263598 TTCATACAAAAT
66 TTCATACAAAAT
63263610 TACAAAATTACAATATTCATATAAAATTACAAAATTACAATATTCATACAAA
1 TACAAAATTACAATATTCATATAAAATTACAAAATTACAATATTCATACAAA
63263662 ATTATAAAAT
Statistics
Matches: 194, Mismatches: 4, Indels: 8
0.94 0.02 0.04
Matches are distributed among these distances:
69 17 0.09
71 5 0.03
73 20 0.10
75 1 0.01
76 2 0.01
77 149 0.77
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (77 bp):
TACAAAATTACAATATTCATATAAAATTACAAAATTACAATATTCATACAAACAATATTACAATA
TTCATACAAAAT
Found at i:63263542 original size:104 final size:105
Alignment explanation
Indices: 63263429--63263691 Score: 394
Period size: 104 Copynumber: 2.5 Consensus size: 105
63263419 ACAATATTCA
*
63263429 TACAAAATTACAATATTCATACAAAATTACAAAATTACAGTATTCATATAAAATTACAAAATTAC
1 TACAAAATTACAATATTCATACAAAATTACAAAATTACAATATTCATATAAAA-TACAAAATTAC
*
63263494 AATATTCATAC-AA-ACAATATTACAATATTCATACAAAAT
65 AATATTCATACAAATACAAAATTACAATATTCATACAAAAT
* * *
63263533 TACAAAATTACAATATTCATATAAAATTACAAAATTACAATATTC--ATACAA-ACAATATTACA
1 TACAAAATTACAATATTCATACAAAATTACAAAATTACAATATTCATATAAAATACAAAATTACA
*
63263595 ATATTCATACAAAATTACAAAATTACAATATTCATATAAAAT
66 ATATTCATAC-AAA-TACAAAATTACAATATTCATACAAAAT
*
63263637 TACAAAATTACAATATTCATACAAAATTATAAAATTACAATATTCATA-AAAATAC
1 TACAAAATTACAATATTCATACAAAATTACAAAATTACAATATTCATATAAAATAC
63263692 TAATCAAAAA
Statistics
Matches: 143, Mismatches: 9, Indels: 12
0.87 0.05 0.07
Matches are distributed among these distances:
100 20 0.14
102 7 0.05
104 110 0.77
105 3 0.02
106 3 0.02
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (105 bp):
TACAAAATTACAATATTCATACAAAATTACAAAATTACAATATTCATATAAAATACAAAATTACA
ATATTCATACAAATACAAAATTACAATATTCATACAAAAT
Found at i:63263775 original size:80 final size:80
Alignment explanation
Indices: 63263667--63264353 Score: 1007
Period size: 80 Copynumber: 8.3 Consensus size: 80
63263657 ACAAAATTAT
63263667 AAAATTACAATATTCATA-AAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAATAA
1 AAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAATAA
*
63263731 TTACACTATTCATAC
66 TTACAATATTCATAC
*
63263746 AAAATTACAATATTCATACAAAATACTAATCAAAAAATATAAATACAAAATTAATTATAAAATAA
1 AAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAATAA
63263811 TTACAATATTCATAC
66 TTACAATATTCATAC
63263826 AAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAATAA
1 AAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAATAA
63263891 TTACAATATTCATAC
66 TTACAATATTCATAC
*
63263906 AAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAGTACAAAATTAATTATAAAATAA
1 AAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAATAA
*
63263971 TTACACTATTCATACAAAATTAC
66 TTACA--A-T-ATTC---A-TAC
*
63263994 AAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAGTACAAAATTAATTATAAAATAA
1 AAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAATAA
*
63264059 TTACACTATTCATACAAAATTAC
66 TTACA--A-T-ATTC---A-TAC
*
63264082 AAAATTACAATATTCATACAAAATACTAATCAAAAAATATAAATACAAAATTAATTATAAAATAA
1 AAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAATAA
*
63264147 TTAAAATATTCATAC
66 TTACAATATTCATAC
63264162 AAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAATAA
1 AAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAATAA
63264227 TTACAATATTCATAC
66 TTACAATATTCATAC
* * * ** * *
63264242 AAAATTATAATATTCATATAAAATTACAAAATTACAATATTCATACAAAATTACAATATTAATTA
1 AAAATTACAATATTCATACAAAA-TAC-TAA-T-CAA-AAAC-TA-TAAA-TACAAAATTAATTA
63264307 TAAAATAATTACAATATTCATAC
58 TAAAATAATTACAATATTCATAC
*
63264330 AAAATTACAATATTCATATAAAAT
1 AAAATTACAATATTCATACAAAAT
63264354 TACAAAATTA
Statistics
Matches: 572, Mismatches: 19, Indels: 26
0.93 0.03 0.04
Matches are distributed among these distances:
79 18 0.03
80 309 0.54
81 4 0.01
82 3 0.01
83 2 0.00
84 9 0.02
85 3 0.01
86 3 0.01
87 5 0.01
88 216 0.38
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (80 bp):
AAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAATAA
TTACAATATTCATAC
Found at i:63264083 original size:168 final size:167
Alignment explanation
Indices: 63263642--63264339 Score: 976
Period size: 168 Copynumber: 4.2 Consensus size: 167
63263632 AAAATTACAA
*
63263642 AATTACAATATTCATACAAAATTATAAAATTACAATATTCATA-AAAATACTAATCAAAAACTAT
1 AATTAC-ATATTCATACAAAATTACAAAATTACAATATTCATACAAAATACTAATCAAAAACTAT
*
63263706 AAATACAAAATTAATTATAAAATAATTACACTATTCATACAAAATTACAATATTCATACAAAATA
65 AAATACAAAATTAATTATAAAATAATTACAATATTCATACAAAATTACAATATTCATACAAAATA
63263771 CTAATCAAAAAATATAAATACAAAATTAATTATAAAAT
130 CTAATCAAAAAATATAAATACAAAATTAATTATAAAAT
*
63263809 AATTACA-A-T-ATTC---A-TACAAAATTACAATATTCATACAAAATACTAATCAAAAACTATA
1 AATTACATATTCATACAAAATTACAAAATTACAATATTCATACAAAATACTAATCAAAAACTATA
63263867 AATACAAAATTAATTATAAAATAATTACAATATTCATACAAAATTACAATATTCATACAAAATAC
66 AATACAAAATTAATTATAAAATAATTACAATATTCATACAAAATTACAATATTCATACAAAATAC
* *
63263932 TAATCAAAAACTATAAGTACAAAATTAATTATAAAAT
131 TAATCAAAAAATATAAATACAAAATTAATTATAAAAT
63263969 AATTACACTATTCATACAAAATTACAAAATTACAATATTCATACAAAATACTAATCAAAAACTAT
1 AATTACA-TATTCATACAAAATTACAAAATTACAATATTCATACAAAATACTAATCAAAAACTAT
* *
63264034 AAGTACAAAATTAATTATAAAATAATTACACTATTCATACAAAATTACAAAATTACAATATTCAT
65 AAATACAAAATTAATTATAAAATAATTACA--A-T-ATTC---A-TACAAAATTACAATATTCAT
63264099 ACAAAATACTAATCAAAAAATATAAATACAAAATTAATTATAAAAT
122 ACAAAATACTAATCAAAAAATATAAATACAAAATTAATTATAAAAT
* *
63264145 AATTA-A-AAT-ATTC---A-TACAAAATTACAATATTCATACAAAATACTAATCAAAAACTATA
1 AATTACATATTCATACAAAATTACAAAATTACAATATTCATACAAAATACTAATCAAAAACTATA
* *
63264203 AATACAAAATTAATTATAAAATAATTACAATATTCATACAAAATTATAATATTCATATAAAATTA
66 AATACAAAATTAATTATAAAATAATTACAATATTCATACAAAATTACAATATTCATACAAAA-TA
* ** * *
63264268 CAAAATTACAATATTCATACAAAATTACAATATTAATTATAAAAT
130 C-TAA-T-CAA-A-AAATA-TAAA-TACAAAATTAATTATAAAAT
63264313 AATTACAATATTCATACAAAATTACAA
1 AATTAC-ATATTCATACAAAATTACAA
63264340 TATTCATATA
Statistics
Matches: 475, Mismatches: 23, Indels: 57
0.86 0.04 0.10
Matches are distributed among these distances:
159 20 0.04
160 153 0.32
161 4 0.01
162 3 0.01
163 5 0.01
164 10 0.02
165 3 0.01
166 5 0.01
167 10 0.02
168 168 0.35
169 1 0.00
170 2 0.00
171 3 0.01
172 9 0.02
173 2 0.00
175 3 0.01
176 74 0.16
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (167 bp):
AATTACATATTCATACAAAATTACAAAATTACAATATTCATACAAAATACTAATCAAAAACTATA
AATACAAAATTAATTATAAAATAATTACAATATTCATACAAAATTACAATATTCATACAAAATAC
TAATCAAAAAATATAAATACAAAATTAATTATAAAAT
Found at i:63264317 original size:69 final size:69
Alignment explanation
Indices: 63264244--63264421 Score: 261
Period size: 69 Copynumber: 2.6 Consensus size: 69
63264234 ATTCATACAA
* * **
63264244 AATTATAATATTCATATAAAATTACAAAATTACA-ATATTCA-TACAAAATTACAATATTAATTA
1 AATTACAATATTCATACAAAATTACAAAATT-CATATA-AAATTACAAAATTACAATATTAATTA
63264307 TAAAAT
64 TAAAAT
*
63264313 AATTACAATATTCATACAAAATTACAATATTCATATAAAATTACAAAATTACAATATTAATTATA
1 AATTACAATATTCATACAAAATTACAAAATTCATATAAAATTACAAAATTACAATATTAATTATA
63264378 AAAT
66 AAAT
* *
63264382 AATTACAATATTCATACAAAATTACAATATTCATACAAAA
1 AATTACAATATTCATACAAAATTACAAAATTCATATAAAA
63264422 AGTTACAATA
Statistics
Matches: 101, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
68 3 0.03
69 98 0.97
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (69 bp):
AATTACAATATTCATACAAAATTACAAAATTCATATAAAATTACAAAATTACAATATTAATTATA
AAAT
Found at i:63264407 original size:42 final size:40
Alignment explanation
Indices: 63264266--63264446 Score: 134
Period size: 42 Copynumber: 4.3 Consensus size: 40
63264256 CATATAAAAT
* *
63264266 TACAAAATTACAATATTCATAC--AAAATTACAATATTAATTA
1 TACAAAATTACAATATTAATACAAAAAATTACAATA-T-A-CA
* * * *
63264307 TAAAATAATTACAATATTCATACAAAATTACAATATTC-ATATAAAA
1 TACAA-AATTACAATATTAATAC-AAA--A-AAT-TACAATAT-ACA
* *
63264353 TTACAAAATTACAATATTAATTATAAAATAATTACAATATTCA
1 -TACAAAATTACAATATTAA-TACAAAA-AATTACAATATACA
* *
63264396 TACAAAATTACAATATTCATACAAAAAGTTACAATATACA
1 TACAAAATTACAATATTAATACAAAAAATTACAATATACA
63264436 TACAAAATTAC
1 TACAAAATTAC
63264447 CCATTGGCAC
Statistics
Matches: 115, Mismatches: 14, Indels: 23
0.76 0.09 0.15
Matches are distributed among these distances:
40 23 0.20
41 10 0.09
42 35 0.30
43 3 0.03
44 8 0.07
45 1 0.01
46 17 0.15
47 10 0.09
48 6 0.05
49 2 0.02
ACGTcount: A:0.55, C:0.12, G:0.01, T:0.33
Consensus pattern (40 bp):
TACAAAATTACAATATTAATACAAAAAATTACAATATACA
Found at i:63264446 original size:40 final size:42
Alignment explanation
Indices: 63263709--63264343 Score: 293
Period size: 42 Copynumber: 15.2 Consensus size: 42
63263699 AAACTATAAA
* * * *
63263709 TACAAAATTAATTATAAAATAATTACACTATTCATACAAAAT
1 TACAATATTAATTACAAAATAATTACAATATACATACAAAAT
* * * * *
63263751 TACAATATTCA-TACAAAATACTAATCAA-A-AAATA-TAAA-
1 TACAATATTAATTACAAAATAATTA-CAATATACATACAAAAT
* * *
63263789 TACAAAATTAATTATAAAATAATTACAATATTCATACAAAAT
1 TACAATATTAATTACAAAATAATTACAATATACATACAAAAT
* * * * *
63263831 TACAATATTCA-TACAAAATACTAATCAA-AAAC-TA-TAAA-
1 TACAATATTAATTACAAAATAATTA-CAATATACATACAAAAT
* * *
63263869 TACAAAATTAATTATAAAATAATTACAATATTCATACAAAAT
1 TACAATATTAATTACAAAATAATTACAATATACATACAAAAT
* * * * * *
63263911 TACAATATTCA-TACAAAATACTAATCAA-AAAC-T--ATAAG
1 TACAATATTAATTACAAAATAATTA-CAATATACATACAAAAT
* * * *
63263949 TACAAAATTAATTATAAAATAATTACACTATTCATACAAAAT
1 TACAATATTAATTACAAAATAATTACAATATACATACAAAAT
* * * * *
63263991 TACAAAATTACAATATTCATACAA-AA-TACTAATCA-A-AAACTATAAG
1 TACAATATT--AAT-TACA-A-AATAATTAC-AAT-ATACATAC-AAAAT
* *
63264037 TACAAAATTAATTATAAAATAATTACACTATTCATACAAAATTACAAAAT
1 TACAATATTAATTACAAAATAATTACA--A-T-ATAC---A-TACAAAAT
* * * * *
63264087 TACAATATTCA-TACAAAATACTAATCAA-A-AAATA-TAAA-
1 TACAATATTAATTACAAAATAATTA-CAATATACATACAAAAT
* * * *
63264125 TACAAAATTAATTATAAAATAATTAAAATATTCATACAAAAT
1 TACAATATTAATTACAAAATAATTACAATATACATACAAAAT
* * * * *
63264167 TACAATATTCA-TACAAAATACTAATCAA-AAAC-TA-TAAA-
1 TACAATATTAATTACAAAATAATTA-CAATATACATACAAAAT
* * *
63264205 TACAAAATTAATTATAAAATAATTACAATATTCATACAAAAT
1 TACAATATTAATTACAAAATAATTACAATATACATACAAAAT
* * * * *
63264247 TATAATATTCATATAAAATTACAAAATTACAATATTCATACAAAAT
1 TACAATATTAAT-TACAA--A-ATAATTACAATATACATACAAAAT
* *
63264293 TACAATATTAATTATAAAATAATTACAATATTCATACAAAAT
1 TACAATATTAATTACAAAATAATTACAATATACATACAAAAT
63264335 TACAATATT
1 TACAATATT
63264344 CATATAAAAT
Statistics
Matches: 434, Mismatches: 106, Indels: 106
0.67 0.16 0.16
Matches are distributed among these distances:
38 61 0.14
39 70 0.16
40 21 0.05
41 62 0.14
42 103 0.24
43 10 0.02
44 8 0.02
45 17 0.04
46 51 0.12
47 3 0.01
48 1 0.00
49 10 0.02
50 15 0.03
51 2 0.00
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (42 bp):
TACAATATTAATTACAAAATAATTACAATATACATACAAAAT
Found at i:63264494 original size:27 final size:27
Alignment explanation
Indices: 63264456--63264523 Score: 136
Period size: 27 Copynumber: 2.5 Consensus size: 27
63264446 CCCATTGGCA
63264456 CCTCCCTATGAGGCACTTTTAATGGTG
1 CCTCCCTATGAGGCACTTTTAATGGTG
63264483 CCTCCCTATGAGGCACTTTTAATGGTG
1 CCTCCCTATGAGGCACTTTTAATGGTG
63264510 CCTCCCTATGAGGC
1 CCTCCCTATGAGGC
63264524 GCCACCCGAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.18, C:0.29, G:0.22, T:0.31
Consensus pattern (27 bp):
CCTCCCTATGAGGCACTTTTAATGGTG
Found at i:63268663 original size:21 final size:19
Alignment explanation
Indices: 63268639--63268677 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
63268629 ATTTGCCTCC
63268639 CTATCTAAGACCATGTTTCCT
1 CTATCTAAG-CCAT-TTTCCT
63268660 CTATCTAAGCCATTTTCC
1 CTATCTAAGCCATTTTCC
63268678 AGAGGATTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 4 0.22
21 9 0.50
ACGTcount: A:0.23, C:0.31, G:0.08, T:0.38
Consensus pattern (19 bp):
CTATCTAAGCCATTTTCCT
Found at i:63273145 original size:21 final size:22
Alignment explanation
Indices: 63273116--63273162 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
63273106 CAGAAGGAGT
*
63273116 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
63273138 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
63273159 GAGT
1 GAGT
63273163 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:63285111 original size:48 final size:48
Alignment explanation
Indices: 63285040--63285136 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
63285030 AGAAGCCCAC
*
63285040 TTTCTAATCTCTTCCTCCTTGCCATCATCTATTAGTTCATTAAATTTT
1 TTTCTAATCTCTTCCTCCTTGCCATCATCTATTAGTTCATTAAAGTTT
63285088 TTTCTAATCTCTTCCTCCTTGCCATCATCTATTAGTTCATTAAAGTTT
1 TTTCTAATCTCTTCCTCCTTGCCATCATCTATTAGTTCATTAAAGTTT
63285136 T
1 T
63285137 GATATCCCAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.21, C:0.25, G:0.05, T:0.49
Consensus pattern (48 bp):
TTTCTAATCTCTTCCTCCTTGCCATCATCTATTAGTTCATTAAAGTTT
Found at i:63289270 original size:24 final size:24
Alignment explanation
Indices: 63289243--63289291 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
63289233 TTGAGCTTTT
*
63289243 AACTTTAGCTACTGATTTGTAGCA
1 AACTTTAACTACTGATTTGTAGCA
63289267 AACTTTAACTACTGATTTGTAGCA
1 AACTTTAACTACTGATTTGTAGCA
63289291 A
1 A
63289292 CCAGTAGCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (24 bp):
AACTTTAACTACTGATTTGTAGCA
Found at i:63289461 original size:40 final size:39
Alignment explanation
Indices: 63289387--63289463 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 39
63289377 ACAAGAAACA
*
63289387 TGAGTCTAAATAAGTTTTGTATAATAAAGTAGTATCTATG
1 TGAGTCTAAATAAGTCTTGTATAATAAAG-AGTATCTATG
63289427 TGAGTCTAAATAAGTCTTGTATGATATAAA-AGTATCT
1 TGAGTCTAAATAAGTCTTGTAT-A-ATAAAGAGTATCT
63289464 CATGAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
40 28 0.82
41 1 0.03
42 5 0.15
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (39 bp):
TGAGTCTAAATAAGTCTTGTATAATAAAGAGTATCTATG
Found at i:63297069 original size:6 final size:6
Alignment explanation
Indices: 63297056--63297097 Score: 59
Period size: 6 Copynumber: 7.0 Consensus size: 6
63297046 TGATGGTTTT
*
63297056 GCTTTG GTTTTG G-TATTG GCTTTG GCTTTG GCTTTG GCTTTG
1 GCTTTG GCTTTG GCT-TTG GCTTTG GCTTTG GCTTTG GCTTTG
63297098 CATTTTGCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
5 1 0.03
6 31 0.94
7 1 0.03
ACGTcount: A:0.02, C:0.12, G:0.33, T:0.52
Consensus pattern (6 bp):
GCTTTG
Found at i:63297506 original size:18 final size:17
Alignment explanation
Indices: 63297471--63297512 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
63297461 TTCAGTCCGG
63297471 TTTTATATTTTTTTTAA
1 TTTTATATTTTTTTTAA
63297488 TTTTA-ATTATTTATTTAA
1 TTTTATATT-TTT-TTTAA
63297506 TTATTAT
1 TT-TTAT
63297513 TTCATTACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 3 0.14
17 8 0.38
18 7 0.33
19 3 0.14
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTATATTTTTTTTAA
Found at i:63302529 original size:22 final size:22
Alignment explanation
Indices: 63302497--63302540 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
63302487 AACTTTTATA
*
63302497 TTTTTATAATTTCAAAAATATT
1 TTTTTAAAATTTCAAAAATATT
* *
63302519 TTTTTAAAATTTTAAAATTATT
1 TTTTTAAAATTTCAAAAATATT
63302541 GTTAAAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTTTAAAATTTCAAAAATATT
Found at i:63312000 original size:14 final size:14
Alignment explanation
Indices: 63311981--63312029 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 14
63311971 TAATTATCTT
63311981 AATTAAAATAACTA
1 AATTAAAATAACTA
*
63311995 AATTAAGA-AA--A
1 AATTAAAATAACTA
63312006 AA-TAAAATAACTA
1 AATTAAAATAACTA
*
63312019 AAATAAAATAA
1 AATTAAAATAA
63312030 ACTCTATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
10 4 0.14
11 5 0.17
13 5 0.17
14 15 0.52
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.22
Consensus pattern (14 bp):
AATTAAAATAACTA
Found at i:63313980 original size:15 final size:16
Alignment explanation
Indices: 63313962--63313991 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
63313952 ATGTAACATT
63313962 TTAAATATAA-ATGAC
1 TTAAATATAACATGAC
63313977 TTAAATATAACATGA
1 TTAAATATAACATGA
63313992 GAGAAACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (16 bp):
TTAAATATAACATGAC
Found at i:63326067 original size:19 final size:19
Alignment explanation
Indices: 63326039--63326077 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
63326029 ATTTTGGTAT
63326039 ATTTTAGTAAATAAAAAAA
1 ATTTTAGTAAATAAAAAAA
* *
63326058 ATTTTGGTAAGTAAAAAAA
1 ATTTTAGTAAATAAAAAAA
63326077 A
1 A
63326078 ATTATAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.31
Consensus pattern (19 bp):
ATTTTAGTAAATAAAAAAA
Found at i:63327108 original size:20 final size:21
Alignment explanation
Indices: 63327080--63327119 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
63327070 GTACATTTTT
63327080 TAAAGTTTATAT-ATATAAAC
1 TAAAGTTTATATGATATAAAC
* *
63327100 TAAATTTTATGTGATATAAA
1 TAAAGTTTATATGATATAAA
63327120 TTTTTTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (21 bp):
TAAAGTTTATATGATATAAAC
Found at i:63330730 original size:27 final size:27
Alignment explanation
Indices: 63330699--63330752 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
63330689 ACATTCAAAA
63330699 TTTGTATAGATTTTGATTGGTATGAAT
1 TTTGTATAGATTTTGATTGGTATGAAT
63330726 TTTGTATAGATTTTGATTGGTATGAAT
1 TTTGTATAGATTTTGATTGGTATGAAT
63330753 ATCATTATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (27 bp):
TTTGTATAGATTTTGATTGGTATGAAT
Found at i:63339765 original size:21 final size:21
Alignment explanation
Indices: 63339726--63339766 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
63339716 CTAACTATAA
*
63339726 TAATTAAAATTTCATAAATTT
1 TAATTAAAATTACATAAATTT
63339747 TAATTAAAATGTACA-AAATT
1 TAATTAAAAT-TACATAAATT
63339767 AATTATAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.41
Consensus pattern (21 bp):
TAATTAAAATTACATAAATTT
Found at i:63345564 original size:17 final size:17
Alignment explanation
Indices: 63345529--63345560 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
63345519 TTATTTTCTC
63345529 TTTCTATTTTTTTTAAT
1 TTTCTATTTTTTTTAAT
63345546 TTTC-ATTTTTTTTAA
1 TTTCTATTTTTTTTAA
63345561 ATTTAATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTCTATTTTTTTTAAT
Found at i:63345573 original size:17 final size:16
Alignment explanation
Indices: 63345534--63345573 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
63345524 TTCTCTTTCT
* *
63345534 ATTTTTTTTAATTTTC
1 ATTTTTTTTAAATTTA
63345550 ATTTTTTTTAAATTTA
1 ATTTTTTTTAAATTTA
*
63345566 ATTGTTTT
1 ATTTTTTT
63345574 CCATAATCAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (16 bp):
ATTTTTTTTAAATTTA
Found at i:63347221 original size:5 final size:6
Alignment explanation
Indices: 63347204--63347229 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
63347194 AGTTAACAAA
63347204 TATTTT TATTTT TATTTT TATTTT TA
1 TATTTT TATTTT TATTTT TATTTT TA
63347230 AAATGGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TATTTT
Found at i:63347557 original size:15 final size:17
Alignment explanation
Indices: 63347525--63347557 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
63347515 AATGTGCTTA
63347525 AAAATATTACATAATTT
1 AAAATATTACATAATTT
63347542 AAAATA-TACA-AATTT
1 AAAATATTACATAATTT
63347557 A
1 A
63347558 TTTAATTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 4 0.25
17 6 0.38
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (17 bp):
AAAATATTACATAATTT
Found at i:63347562 original size:19 final size:19
Alignment explanation
Indices: 63347538--63347575 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
63347528 ATATTACATA
63347538 ATTTAAAATATACAA-ATTT
1 ATTT-AAATATACAATATTT
*
63347557 ATTTAATTATACAATATTT
1 ATTTAAATATACAATATTT
63347576 TAAATATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTTAAATATACAATATTT
Found at i:63349217 original size:22 final size:23
Alignment explanation
Indices: 63349191--63349236 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
63349181 TAACTTGACA
63349191 AATTTTAT-AAAATTTAAAAGTT
1 AATTTTATCAAAATTTAAAAGTT
* *
63349213 AATTTTGTCAAAATTTTAAAGTT
1 AATTTTATCAAAATTTAAAAGTT
63349236 A
1 A
63349237 GAACCAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.46
Consensus pattern (23 bp):
AATTTTATCAAAATTTAAAAGTT
Found at i:63352356 original size:36 final size:37
Alignment explanation
Indices: 63352295--63352368 Score: 141
Period size: 36 Copynumber: 2.0 Consensus size: 37
63352285 ATTAAAAATT
63352295 AACACTTTCATGATTTTTTTAATTATTTTTCTTTGTC
1 AACACTTTCATGATTTTTTTAATTATTTTTCTTTGTC
63352332 AACACTTTCATGA-TTTTTTAATTATTTTTCTTTGTC
1 AACACTTTCATGATTTTTTTAATTATTTTTCTTTGTC
63352368 A
1 A
63352369 TGTTGACGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 24 0.65
37 13 0.35
ACGTcount: A:0.23, C:0.14, G:0.05, T:0.58
Consensus pattern (37 bp):
AACACTTTCATGATTTTTTTAATTATTTTTCTTTGTC
Found at i:63355788 original size:153 final size:154
Alignment explanation
Indices: 63355405--63356071 Score: 881
Period size: 155 Copynumber: 4.4 Consensus size: 154
63355395 ACCATGTTCA
* * * * *
63355405 TATTTCAGCCATTTATTTGTATTTTTTCTCCGGATTTTATTACTTT-AA-AAAAATATACTATTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTC-CCGAATTTTATTACTTTCAATAAAAATATACTATTT
* * * *
63355468 TCTAA-TTTATTATTTTATATTATTTTAGTACATTATGTTTGTAATGTATTCATTTAGTGTGTTT
65 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTT
* * *
63355532 TTT-ATTTAAATTTTAAAAAACCCT
130 TTTAAATAAAATTTAAAAAAACCCT
* * * * *
63355556 TATTTCAGCCATTTGTTCGTATTTTTTTCAG-ATTTTATTACTTTCAATAAAAATATATTATTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTCCCGAATTTTATTACTTTCAATAAAAATATACTATTTT
*
63355620 CGT-ATTTTATTATTTTACACTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTT
66 C-TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTT
63355684 TTTAAATAAAATTTAAAAAAACCCT
130 TTTAAATAAAATTTAAAAAAACCCT
63355709 TATTTCGGCCCTTTGTTCGTATTTTTTCCCCGAATTTTATTACTTT-AA-AAAAATATACTATTT
1 TATTTCGGCCCTTTGTTCGTATTTTTT-CCCGAATTTTATTACTTTCAATAAAAATATACTATTT
* * *
63355772 TCTAATTTTATTATTTTAAATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTT
65 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTT
*
63355837 TTTAAAT-AAATTTAAAAAAAAATCCT
130 TTTAAATAAAATTT--AAAAAAACCCT
** *
63355863 TATTTCGATCCTTTGTTCGTATTTTTTCCC-ATATTTTATTACTTTCAATAAAAATATATTATTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTCCCGA-ATTTTATTACTTTCAATAAAAATATACTATTT
* * *
63355927 T-TGTATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTAT-AT
65 TCT-AATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTT
* *
63355990 TTTTAAAAAAAATTTAGTAAAAAACTCT
129 TTTTAAATAAAATTTA--AAAAAACCCT
* *
63356018 TATTTCGGCCCTCTGTTCGTATTTTTTACCGAATTTTATTACTTTCAATAAAAA
1 TATTTCGGCCCTTTGTTCGTATTTTTTCCCGAATTTTATTACTTTCAATAAAAA
63356072 ACACACTAAA
Statistics
Matches: 459, Mismatches: 39, Indels: 32
0.87 0.07 0.06
Matches are distributed among these distances:
149 13 0.03
150 4 0.01
151 42 0.09
152 66 0.14
153 140 0.31
154 50 0.11
155 143 0.31
156 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.51
Consensus pattern (154 bp):
TATTTCGGCCCTTTGTTCGTATTTTTTCCCGAATTTTATTACTTTCAATAAAAATATACTATTTT
CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTT
TTAAATAAAATTTAAAAAAACCCT
Found at i:63355977 original size:308 final size:304
Alignment explanation
Indices: 63355405--63356071 Score: 1025
Period size: 308 Copynumber: 2.2 Consensus size: 304
63355395 ACCATGTTCA
* * * * * *
63355405 TATTTCAGCCATTTATTTGTATTTTTTCTCCGGATTTTATTACTTTAAAAAAATATACTATTTTC
1 TATTTCGGCCCTTTGTTCGTATTTTTTCACCGAATTTTATTACTTTAAAAAAATATACTATTTTC
* *
63355470 TAATTTATTATTTTATATTATTTTAGTACATTATGTTTGTAATGTATTCATTTAGTGTGTTTTTT
66 TAATTTATTATTTTAAATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTT
** * *
63355535 ATTTAAATTTTAAAAAACCCTTATTTCAGCCATTTGTTCGTATTTTTTTCAGATTTTATTACTTT
131 AAATAAATTTAAAAAAACCCTTATTTCAGCCATTTGTTCGTATTTTTTCCAGATTTTATTACTTT
63355600 CAATAAAAATATATTATTTTCGTATTTTATTATTTTACACTATTTTAGTACATTATGTTTGAAAT
196 CAATAAAAATATATTATTTTCGTATTTTATTATTTTACACTATTTTAGTACATTATGTTTGAAAT
* * *
63355665 GTATTAATTTACTGTGTTTTTTAAATAAAATTTA-AAAAAACCCT
261 GTATTAATTTACTAT-ATTTTTAAAAAAAATTTAGAAAAAACCCT
*
63355709 TATTTCGGCCCTTTGTTCGTATTTTTTCCCCGAATTTTATTACTTTAAAAAAATATACTATTTTC
1 TATTTCGGCCCTTTGTTCGTATTTTTTCACCGAATTTTATTACTTTAAAAAAATATACTATTTTC
63355774 TAATTTTATTATTTTAAATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTT
66 TAA-TTTATTATTTTAAATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTT
* * *
63355839 TAAATAAATTTAAAAAAAAATCCTTATTTCGATCC-TTTGTTCGTATTTTTTCCCATATTTTATT
130 TAAATAAATTT--AAAAAAACCCTTATTTC-AGCCATTTGTTCGTATTTTTT-CCAGATTTTATT
* *
63355903 ACTTTCAATAAAAATATATTATTTTTGTATTTTATTATTTTACATTATTTTAGTACATTATGTTT
191 ACTTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTACACTATTTTAGTACATTATGTTT
*
63355968 GAAATGTATTAATTTACTATATTTTTAAAAAAAATTTAGTAAAAAACTCT
256 GAAATGTATTAATTTACTATATTTTTAAAAAAAATTTAG-AAAAAACCCT
*
63356018 TATTTCGGCCCTCTGTTCGTATTTTTT-ACCGAATTTTATTACTTTCAATAAAAA
1 TATTTCGGCCCTTTGTTCGTATTTTTTCACCGAATTTTATTACTTT-AA-AAAAA
63356072 ACACACTAAA
Statistics
Matches: 331, Mismatches: 23, Indels: 12
0.90 0.06 0.03
Matches are distributed among these distances:
304 62 0.19
305 68 0.21
307 47 0.14
308 112 0.34
309 37 0.11
310 5 0.02
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.51
Consensus pattern (304 bp):
TATTTCGGCCCTTTGTTCGTATTTTTTCACCGAATTTTATTACTTTAAAAAAATATACTATTTTC
TAATTTATTATTTTAAATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTT
AAATAAATTTAAAAAAACCCTTATTTCAGCCATTTGTTCGTATTTTTTCCAGATTTTATTACTTT
CAATAAAAATATATTATTTTCGTATTTTATTATTTTACACTATTTTAGTACATTATGTTTGAAAT
GTATTAATTTACTATATTTTTAAAAAAAATTTAGAAAAAACCCT
Found at i:63356319 original size:29 final size:27
Alignment explanation
Indices: 63356287--63356354 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 27
63356277 TTTTTGTACC
63356287 ATTTTAGTAAATAAACTTTTTTGTATATT
1 ATTTTAGTAAATAAA-TTTTTT-TATATT
** **
63356316 ATTTTAGTATTTTTTATTTTTTTATATT
1 ATTTTAGTA-AATAAATTTTTTTATATT
63356344 ATTTTAGTAAA
1 ATTTTAGTAAA
63356355 ATACCTAACT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
28 15 0.47
29 15 0.47
30 2 0.06
ACGTcount: A:0.31, C:0.01, G:0.06, T:0.62
Consensus pattern (27 bp):
ATTTTAGTAAATAAATTTTTTTATATT
Found at i:63362353 original size:3 final size:3
Alignment explanation
Indices: 63362345--63362372 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
63362335 TTGTTTCATG
63362345 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
63362373 GTTATATGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:63365411 original size:17 final size:14
Alignment explanation
Indices: 63365374--63365403 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
63365364 ACCATTAGCC
63365374 TTATATTATTATTT
1 TTATATTATTATTT
63365388 TTATATTATTATTT
1 TTATATTATTATTT
63365402 TT
1 TT
63365404 TACATATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
TTATATTATTATTT
Found at i:63365503 original size:24 final size:23
Alignment explanation
Indices: 63365472--63365516 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
63365462 TATACATACC
* *
63365472 TTATTATATATCTTTATATCTTA
1 TTATTATATATATCTATATCTTA
63365495 TTATGTATATATATCTATATCT
1 TTAT-TATATATATCTATATCT
63365517 CTTTTTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.58
Consensus pattern (23 bp):
TTATTATATATATCTATATCTTA
Found at i:63365796 original size:19 final size:19
Alignment explanation
Indices: 63365774--63365827 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 19
63365764 GCATATGTAC
63365774 ATATTATATATATATTT-AT
1 ATATTATATATAT-TTTAAT
* *
63365793 ATATTCTTTATATTTTAAAAT
1 ATATTATATATATTTT--AAT
63365814 ATATTATATATATT
1 ATATTATATATATT
63365828 ATATATACTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 3 0.11
19 11 0.39
21 14 0.50
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
ATATTATATATATTTTAAT
Found at i:63365841 original size:9 final size:9
Alignment explanation
Indices: 63365774--63365834 Score: 50
Period size: 9 Copynumber: 6.3 Consensus size: 9
63365764 GCATATGTAC
63365774 ATATTATAT
1 ATATTATAT
*
63365783 ATATATTTAT
1 ATAT-TATAT
*
63365793 ATATTCTTTAT
1 ATA-T-TATAT
* *
63365804 ATTTTAAAAT
1 ATATT-ATAT
63365814 ATATTATAT
1 ATATTATAT
63365823 ATATTATAT
1 ATATTATAT
63365832 ATA
1 ATA
63365835 CTTTATAATT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
9 20 0.48
10 14 0.33
11 8 0.19
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (9 bp):
ATATTATAT
Found at i:63366015 original size:18 final size:18
Alignment explanation
Indices: 63365968--63366011 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
63365958 CTTAAAGTGC
* *
63365968 TTTAATTTTATTTGTTTA
1 TTTACTTTTATTTGTTGA
63365986 TTTACTTTTATTTGTTGA
1 TTTACTTTTATTTGTTGA
63366004 TTT-CTTTT
1 TTTACTTTT
63366012 TATTATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 5 0.21
18 19 0.79
ACGTcount: A:0.16, C:0.05, G:0.07, T:0.73
Consensus pattern (18 bp):
TTTACTTTTATTTGTTGA
Found at i:63378123 original size:30 final size:30
Alignment explanation
Indices: 63378057--63378123 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 30
63378047 GGTTTGATTT
* * **
63378057 TAAAATAAATAAGTTATTGTGGTTCAATTT
1 TAAAATAAATAAATTATTGTGGCTCAATAA
* * *
63378087 TGAAATAAATAAATTTTTGTGGCTCGATAA
1 TAAAATAAATAAATTATTGTGGCTCAATAA
63378117 TAAAATA
1 TAAAATA
63378124 TGTTTTGGAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.43, C:0.04, G:0.13, T:0.39
Consensus pattern (30 bp):
TAAAATAAATAAATTATTGTGGCTCAATAA
Found at i:63379275 original size:3 final size:3
Alignment explanation
Indices: 63379267--63379307 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
63379257 ATGAATTAAA
*
63379267 TAT TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
63379308 ATAACTAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:63380426 original size:23 final size:22
Alignment explanation
Indices: 63380395--63380486 Score: 112
Period size: 23 Copynumber: 4.0 Consensus size: 22
63380385 GGCTTAGCCG
*
63380395 ATCATGCACTATATGTGTCGTAT
1 ATCAGGCACT-TATGTGTCGTAT
63380418 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCAC-TTATGTGTCGTAT
* **
63380441 TTCAGGCACCTCGTGTGTCGTAT
1 ATCAGGCA-CTTATGTGTCGTAT
*
63380464 TTCAGGCACTTATGTGTCGTAT
1 ATCAGGCACTTATGTGTCGTAT
63380486 A
1 A
63380487 CTGATCAGGT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
22 12 0.20
23 46 0.77
24 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.38
Consensus pattern (22 bp):
ATCAGGCACTTATGTGTCGTAT
Found at i:63390024 original size:21 final size:21
Alignment explanation
Indices: 63390000--63390041 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
63389990 AATTAACACA
63390000 TAAATTATTTGTAATTTTTAT
1 TAAATTATTTGTAATTTTTAT
63390021 TAAATTATTTGTAATTTTTAT
1 TAAATTATTTGTAATTTTTAT
63390042 GATTGGGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (21 bp):
TAAATTATTTGTAATTTTTAT
Found at i:63390066 original size:18 final size:18
Alignment explanation
Indices: 63390043--63390078 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
63390033 AATTTTTATG
*
63390043 ATTGGGTTGGGTTGGATA
1 ATTGGGTTGGGTTAGATA
63390061 ATTGGGTTGGGTTAGATA
1 ATTGGGTTGGGTTAGATA
63390079 CTTGAATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.42, T:0.39
Consensus pattern (18 bp):
ATTGGGTTGGGTTAGATA
Found at i:63391176 original size:9 final size:9
Alignment explanation
Indices: 63391150--63391179 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
63391140 TTTTAAAAAT
63391150 AATTTATAA
1 AATTTATAA
63391159 AATTT-TAA
1 AATTTATAA
63391167 AATTTATAA
1 AATTTATAA
63391176 AATT
1 AATT
63391180 AATTAAATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
AATTTATAA
Found at i:63393375 original size:72 final size:72
Alignment explanation
Indices: 63393258--63393790 Score: 631
Period size: 72 Copynumber: 7.4 Consensus size: 72
63393248 GTTACTCACC
* * * *
63393258 TTGATCTTTCAGTAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTCTG
1 TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGCAGTTATCATCTCTG
*
63393323 AAGTTGT
66 AAGGTGT
* * * * * * * *
63393330 TTGATGTTTCAGAAAATCAGTTAAACGGCCAAATTCCCTTGTCTATAGGGTATTTGTCATC-CTT
1 TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGCAGTTATCATCTC-T
* * *
63393394 GGAGGAGA
65 GAAGGTGT
* *
63393402 TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG
1 TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGCAGTTATCATCTCTG
*
63393467 AAGTTGT
66 AAGGTGT
* * * * * *
63393474 TTGATGTTTCAAAAAACCAGTTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTGTCATC-CTT
1 TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGCAGTTATCATCTC-T
* *
63393538 GGAGGAGT
65 GAAGGTGT
* *
63393546 TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG
1 TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGCAGTTATCATCTCTG
*
63393611 AAGTTGT
66 AAGGTGT
* * * * * * *
63393618 TTGATGTTTCAAAAAATCAGTTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTGTCATC-CTT
1 TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGCAGTTATCATCTC-T
*
63393682 GAAGGAGT
65 GAAGGTGT
*
63393690 TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGCAGTTATCATCTTTG
1 TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGCAGTTATCATCTCTG
** *
63393755 GTGGTAT
66 AAGGTGT
*
63393762 TTGATGTTTCAGAAAATCAATTAAATGGT
1 TTGATGTTTCAGAAAACCAATTAAATGGT
63393791 ACTTTTCCTC
Statistics
Matches: 383, Mismatches: 72, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
71 1 0.00
72 382 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (72 bp):
TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGCAGTTATCATCTCTG
AAGGTGT
Found at i:63393463 original size:144 final size:144
Alignment explanation
Indices: 63393258--63393786 Score: 905
Period size: 144 Copynumber: 3.7 Consensus size: 144
63393248 GTTACTCACC
* * * *
63393258 TTGATCTTTCAGTAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTCTG
1 TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG
* * *
63393323 AAGTTGTTTGATGTTTCAGAAAATCAGTTAAACGGCCAAATTCCCTTGTCTATAGGGTATTTGTC
66 AAGTTGTTTGATGTTTCAAAAAATCAGTTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTGTC
*
63393388 ATCCTTGGAGGAGA
131 ATCCTTGGAGGAGT
63393402 TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG
1 TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG
*
63393467 AAGTTGTTTGATGTTTCAAAAAACCAGTTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTGTC
66 AAGTTGTTTGATGTTTCAAAAAATCAGTTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTGTC
63393532 ATCCTTGGAGGAGT
131 ATCCTTGGAGGAGT
63393546 TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG
1 TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG
63393611 AAGTTGTTTGATGTTTCAAAAAATCAGTTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTGTC
66 AAGTTGTTTGATGTTTCAAAAAATCAGTTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTGTC
*
63393676 ATCCTTGAAGGAGT
131 ATCCTTGGAGGAGT
*
63393690 TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGCAGTTATCATCTTTG
1 TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG
** * * * *
63393755 GTGGTATTTGATGTTTCAGAAAATCAATTAAA
66 AAGTTGTTTGATGTTTCAAAAAATCAGTTAAA
63393787 TGGTACTTTT
Statistics
Matches: 367, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
144 367 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (144 bp):
TTGATGTTTCAGAAAACCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG
AAGTTGTTTGATGTTTCAAAAAATCAGTTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTGTC
ATCCTTGGAGGAGT
Found at i:63405583 original size:46 final size:45
Alignment explanation
Indices: 63405514--63405605 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 45
63405504 CATGGCAAAA
63405514 TGTGAAAGTAGGTATGGTATTTCAATGAAGAAAACCATACTGAGT
1 TGTGAAAGTAGGTATGGTATTTCAATGAAGAAAACCATACTGAGT
*
63405559 TGTGAAAAGTAGGTATGGTGTTTCAATGAAGAAAACCATACTGAGT
1 TGTG-AAAGTAGGTATGGTATTTCAATGAAGAAAACCATACTGAGT
63405605 T
1 T
63405606 ATAGCAATGT
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 4 0.09
46 41 0.91
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (45 bp):
TGTGAAAGTAGGTATGGTATTTCAATGAAGAAAACCATACTGAGT
Found at i:63409798 original size:72 final size:72
Alignment explanation
Indices: 63409681--63409997 Score: 445
Period size: 72 Copynumber: 4.4 Consensus size: 72
63409671 GTTACTCAGC
* * * * * *
63409681 TTGATCTTTCAGTAAATCAATTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTGTCATCTTTG
1 TTGATGTTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGCAGTTATCATCTTTG
*
63409746 GAGGAGT
66 AAGGAGT
* *
63409753 TTGATGCTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG
1 TTGATGTTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGCAGTTATCATCTTTG
**
63409818 AAGTTGT
66 AAGGAGT
* * * *
63409825 TTGATGTTTCAGAAAATCAATTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTGTCATCTTTG
1 TTGATGTTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGCAGTTATCATCTTTG
*
63409890 GAGGAGT
66 AAGGAGT
* * *
63409897 TTAATGTTTCAGAAAATCGATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG
1 TTGATGTTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGCAGTTATCATCTTTG
**
63409962 AAGTTGT
66 AAGGAGT
63409969 TTGATGTTTCAGAAAATCAATTAAATGGT
1 TTGATGTTTCAGAAAATCAATTAAATGGT
63409998 ACATTTCCTC
Statistics
Matches: 213, Mismatches: 32, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
72 213 1.00
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (72 bp):
TTGATGTTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGCAGTTATCATCTTTG
AAGGAGT
Found at i:63409941 original size:144 final size:144
Alignment explanation
Indices: 63409681--63409993 Score: 581
Period size: 144 Copynumber: 2.2 Consensus size: 144
63409671 GTTACTCAGC
* *
63409681 TTGATCTTTCAGTAAATCAATTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTGTCATCTTTG
1 TTGATGTTTCAGAAAATCAATTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTGTCATCTTTG
*
63409746 GAGGAGTTTGATGCTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATC
66 GAGGAGTTTAATGCTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATC
63409811 ATCTTTGAAGTTGT
131 ATCTTTGAAGTTGT
63409825 TTGATGTTTCAGAAAATCAATTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTGTCATCTTTG
1 TTGATGTTTCAGAAAATCAATTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTGTCATCTTTG
* *
63409890 GAGGAGTTTAATGTTTCAGAAAATCGATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATC
66 GAGGAGTTTAATGCTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATC
63409955 ATCTTTGAAGTTGT
131 ATCTTTGAAGTTGT
63409969 TTGATGTTTCAGAAAATCAATTAAA
1 TTGATGTTTCAGAAAATCAATTAAA
63409994 TGGTACATTT
Statistics
Matches: 164, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
144 164 1.00
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (144 bp):
TTGATGTTTCAGAAAATCAATTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTGTCATCTTTG
GAGGAGTTTAATGCTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATC
ATCTTTGAAGTTGT
Found at i:63413234 original size:23 final size:24
Alignment explanation
Indices: 63413191--63413241 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
63413181 GAATGGGAAA
*
63413191 AAAAGTAAAAAAGAGAGAAAAATGT
1 AAAAGTAAAAAAGAGAAAAAAAT-T
63413216 AAAAG-AAAAAAG-GAAAAAAATT
1 AAAAGTAAAAAAGAGAAAAAAATT
63413238 AAAA
1 AAAA
63413242 AAATATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 5 0.20
23 8 0.32
24 7 0.28
25 5 0.20
ACGTcount: A:0.75, C:0.00, G:0.16, T:0.10
Consensus pattern (24 bp):
AAAAGTAAAAAAGAGAAAAAAATT
Found at i:63413381 original size:29 final size:28
Alignment explanation
Indices: 63413329--63413387 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
63413319 GTCAAATGGG
*
63413329 TAAGAGAAGAATAGTTTAAGTACC-ACT
1 TAAGAGAAAAATAGTTTAAGTACCAACT
63413356 TAAGAGCAAAAATATGTTT-AGATACCAACT
1 TAAGAG-AAAAATA-GTTTAAG-TACCAACT
63413386 TA
1 TA
63413388 TAAGTTAAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 6 0.22
28 8 0.30
29 8 0.30
30 5 0.19
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (28 bp):
TAAGAGAAAAATAGTTTAAGTACCAACT
Found at i:63413667 original size:26 final size:26
Alignment explanation
Indices: 63413638--63413687 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
63413628 TATAATATTG
63413638 AATTTAGTTTTCAATT-TTTTTTTGTC
1 AATTTAGTTTT-AATTCTTTTTTTGTC
*
63413664 AATTTAGTTTTTATTCTTTTTTTG
1 AATTTAGTTTTAATTCTTTTTTTG
63413688 AGCTCAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.18, C:0.06, G:0.08, T:0.68
Consensus pattern (26 bp):
AATTTAGTTTTAATTCTTTTTTTGTC
Found at i:63414476 original size:121 final size:121
Alignment explanation
Indices: 63414324--63414543 Score: 289
Period size: 121 Copynumber: 1.8 Consensus size: 121
63414314 TCAAATAATT
* * *
63414324 AAAAAATAATTTTTAATCTCCACTCATGAAAATGAAATACAATTTATTGTCAATCATTTATCTTT
1 AAAAAATAATTTTTAATCTCCACTCACGAAAATGAAACACAATTTATTGTCAATCATTTAACTTT
* *
63414389 TCGGAATACATCCACAATTAGAAGATTAATCACTATTACTGATTATGGATGTTCAA
66 TCGGAAAACATCCACAATTAGAAAATTAATCACTATTACTGATTATGGATGTTCAA
* * * * * *
63414445 AAAATAATATTTTTTAATC-CCGCTCACGAAAATGGAACATATTTTATTGTCACTCATTTAACTT
1 AAAA-AATAATTTTTAATCTCCACTCACGAAAATGAAACACAATTTATTGTCAATCATTTAACTT
* ** *
63414509 TTCGGAAAATATCTTCAGTTAGAAAATTAATCACT
65 TTCGGAAAACATCCACAATTAGAAAATTAATCACT
63414544 GCTATCAATG
Statistics
Matches: 83, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
121 70 0.84
122 13 0.16
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.37
Consensus pattern (121 bp):
AAAAAATAATTTTTAATCTCCACTCACGAAAATGAAACACAATTTATTGTCAATCATTTAACTTT
TCGGAAAACATCCACAATTAGAAAATTAATCACTATTACTGATTATGGATGTTCAA
Found at i:63414654 original size:19 final size:20
Alignment explanation
Indices: 63414614--63414655 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
63414604 CAGATTTAAG
*
63414614 TTGAATTTTTAAAAGTAATAT
1 TTGAAGTTTTAAAAG-AATAT
63414635 TTGAAGTTTTAAAA-AATAT
1 TTGAAGTTTTAAAAGAATAT
63414654 TT
1 TT
63414656 TATTCACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 7 0.35
21 13 0.65
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.48
Consensus pattern (20 bp):
TTGAAGTTTTAAAAGAATAT
Found at i:63420919 original size:72 final size:72
Alignment explanation
Indices: 63420801--63420957 Score: 197
Period size: 72 Copynumber: 2.2 Consensus size: 72
63420791 ACCAATCTCG
* * * * * * *
63420801 AAAATCAATTAAATGGTCAAGTTCCATTGTCTATAGGGGAGCTATCATCTTTGAAGTTGTTTAAT
1 AAAATCAATTAAACGGCCAAATTCCATCGTCTATAGGGCAGCTATCATCTTTGAAGGTATTTAAT
63420866 GTTTCAA
66 GTTTCAA
* * * * *
63420873 AAAATCAGTTAAACGGCCAAATTCCCTCGTCTATAGGGCAGTTATCATCTTTGGAGGTATTTGAT
1 AAAATCAATTAAACGGCCAAATTCCATCGTCTATAGGGCAGCTATCATCTTTGAAGGTATTTAAT
*
63420938 GTTTCAG
66 GTTTCAA
63420945 AAAATCAATTAAA
1 AAAATCAATTAAA
63420958 TGGTACTTTT
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (72 bp):
AAAATCAATTAAACGGCCAAATTCCATCGTCTATAGGGCAGCTATCATCTTTGAAGGTATTTAAT
GTTTCAA
Found at i:63424912 original size:14 final size:16
Alignment explanation
Indices: 63424889--63424928 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
63424879 ACAGAAATAG
63424889 ATTTTT-TTTA-TTAT
1 ATTTTTATTTATTTAT
63424903 -TTTTTATTTATTTAT
1 ATTTTTATTTATTTAT
63424918 ATTTATTATTT
1 ATTT-TTATTT
63424929 CGGCTATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 5 0.23
14 4 0.18
15 4 0.18
16 3 0.14
17 6 0.27
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
ATTTTTATTTATTTAT
Found at i:63425172 original size:21 final size:19
Alignment explanation
Indices: 63425147--63425197 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 19
63425137 AAAACTCAAA
*
63425147 CCCAATACCCAACCACCCTGG
1 CCCAATACCCAA--ACCCTAG
*
63425168 CCCAACTAACCAAACCCTAG
1 CCCAA-TACCCAAACCCTAG
63425188 CCCAA-ACCCA
1 CCCAATACCCA
63425198 TAACAGAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 4 0.15
20 11 0.42
21 5 0.19
22 6 0.23
ACGTcount: A:0.35, C:0.51, G:0.06, T:0.08
Consensus pattern (19 bp):
CCCAATACCCAAACCCTAG
Found at i:63427433 original size:27 final size:28
Alignment explanation
Indices: 63427403--63427471 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 28
63427393 CATAGCTTTT
63427403 ATATACATATATATATT-ATATTTTATA
1 ATATACATATATATATTCATATTTTATA
** * *
63427430 ATATTTATACAT-TTTTCATATTTTATA
1 ATATACATATATATATTCATATTTTATA
63427457 ACTTATACATATATA
1 A--TATACATATATA
63427472 CACGCATAGG
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
26 3 0.10
27 20 0.65
29 8 0.26
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (28 bp):
ATATACATATATATATTCATATTTTATA
Found at i:63427598 original size:18 final size:19
Alignment explanation
Indices: 63427570--63427607 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
63427560 TATATATATA
*
63427570 TATATATACATTTACATTT
1 TATATATACATATACATTT
63427589 TATA-ATACATATACATTT
1 TATATATACATATACATTT
63427607 T
1 T
63427608 TCCATTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (19 bp):
TATATATACATATACATTT
Found at i:63427788 original size:19 final size:19
Alignment explanation
Indices: 63427742--63427798 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
63427732 TCTCATACAC
*
63427742 ATATATATATTTTCATAGTTT
1 ATATATATATATT-ATA-TTT
63427763 AT-T-TATATATTATATTT
1 ATATATATATATTATATTT
63427780 ATATATATATATTAT-TTT
1 ATATATATATATTATATTT
63427798 A
1 A
63427799 CTTTGTAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
17 5 0.15
18 8 0.24
19 17 0.52
20 1 0.03
21 2 0.06
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (19 bp):
ATATATATATATTATATTT
Found at i:63427796 original size:17 final size:17
Alignment explanation
Indices: 63427743--63427789 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
63427733 CTCATACACA
*
63427743 TATATATATTTTCATAGTT
1 TATATATATATT-ATA-TT
*
63427762 TATTTATATATTATATT
1 TATATATATATTATATT
63427779 TATATATATAT
1 TATATATATAT
63427790 ATTATTTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 12 0.48
18 3 0.12
19 10 0.40
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (17 bp):
TATATATATATTATATT
Found at i:63431998 original size:27 final size:27
Alignment explanation
Indices: 63431940--63432000 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
63431930 ATAAGGATAT
* * * *
63431940 ATATATATATATAATAAGATAGAAGAT
1 ATATATATATATAAGAAGATAAAAAAC
*
63431967 ATATATATATATACGAAGATAAAAAAC
1 ATATATATATATAAGAAGATAAAAAAC
*
63431994 GTATATA
1 ATATATA
63432001 AAGATATATA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.56, C:0.03, G:0.10, T:0.31
Consensus pattern (27 bp):
ATATATATATATAAGAAGATAAAAAAC
Found at i:63432033 original size:35 final size:37
Alignment explanation
Indices: 63431962--63432035 Score: 89
Period size: 35 Copynumber: 2.0 Consensus size: 37
63431952 AATAAGATAG
63431962 AAGATATATATATATATACGAAGATAAAAAACGTATATA
1 AAGATATATATATATATA--AAGATAAAAAACGTATATA
* * *
63432001 AAGATATATATA-ATAT-AAGGTATAAAATGTATATA
1 AAGATATATATATATATAAAGATAAAAAACGTATATA
63432036 TACAAGTAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
35 16 0.50
38 4 0.12
39 12 0.38
ACGTcount: A:0.55, C:0.03, G:0.11, T:0.31
Consensus pattern (37 bp):
AAGATATATATATATATAAAGATAAAAAACGTATATA
Found at i:63432285 original size:28 final size:28
Alignment explanation
Indices: 63432232--63432286 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
63432222 TAAATAATTA
* *
63432232 TAATAATATTAATGATGTAATGTGATAG
1 TAATAATATTAATGATGAAATATGATAG
63432260 TAATAATATTAATGAT-AAATAATGATA
1 TAATAATATTAATGATGAAAT-ATGATA
63432287 ATAAGTGGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.12
28 21 0.88
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (28 bp):
TAATAATATTAATGATGAAATATGATAG
Found at i:63432317 original size:3 final size:3
Alignment explanation
Indices: 63432309--63432456 Score: 68
Period size: 3 Copynumber: 48.7 Consensus size: 3
63432299 GAGATATGAA
* * * *
63432309 AAT AAT AAT AAT AAT AGT AAT -AT CAGT GAA- AAT ATT AAT AAT ATT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT AAT AAT AAT AAT AAT
* * * * * **
63432354 AAAT AAAT AAT AAT AAC AAT ATT AAC AAT AATT TAT AAT TAT GTT AAT
1 -AAT -AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT
** * * * **
63432402 AGG AAC AA- AAT AAC AAT AAT ACT AAT AAT AAT AAT AAT AAT GCT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
63432449 AAT AAT AA
1 AAT AAT AA
63432457 GTGTCGAAAC
Statistics
Matches: 105, Mismatches: 34, Indels: 12
0.70 0.23 0.08
Matches are distributed among these distances:
2 6 0.06
3 89 0.85
4 10 0.10
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:63435149 original size:44 final size:44
Alignment explanation
Indices: 63435095--63435208 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
63435085 ACCGGTATGG
* *
63435095 GAAGACAAGATCTGCTTTCTTTGATCTACTTCATGCCAGTACAT
1 GAAGACAAGATCTGCTTTCTTTGATCTACTTCACGCCAATACAT
* ** *
63435139 GAAGACAAGATCTGTTTTCTCCGATCTACTTCACGTCAATACAT
1 GAAGACAAGATCTGCTTTCTTTGATCTACTTCACGCCAATACAT
*
63435183 GAAGACAAGATCTTCTTT-TTTCGATC
1 GAAGACAAGATCTGCTTTCTTT-GATC
63435209 GATTCCACTG
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 1 0.02
44 58 0.98
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTTGATCTACTTCACGCCAATACAT
Found at i:63435466 original size:44 final size:44
Alignment explanation
Indices: 63435399--63435687 Score: 193
Period size: 45 Copynumber: 6.5 Consensus size: 44
63435389 ACCGATATAG
* * * * *
63435399 GAAGACAAGACCTACTATCTTTGATCTGTTTCACGCCGGTACAT
1 GAAGACAAGATCTGCTTTCTTTGATCTGCTTCACGCCAGTACAT
* * * ***
63435443 GAAAACAAGATCTGCTTTCTTTGATCTGCTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTTTCTTTGATCTGCTTC-ACGCCAGTACAT
* * * * * *
63435488 GAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTTGATCTGCTTCACGCCAGTACAT
* * * ***
63435532 GAAGACAAGATCTACTTTCTTTGATCTGCTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTTTCTTTGATCTGCTTC-ACGCCAGTACAT
* * * * * * **
63435577 GAAGGCAAGATCTGCTTTCTTCGATCTACTCCACCACCTGTACGG
1 GAAGACAAGATCTGCTTTCTTTGATCTGCTTCA-CGCCAGTACAT
* * * * * *
63435622 GGAGACAAGATCTGGTATCTATGATCTACTTCACGCTAGTACAT
1 GAAGACAAGATCTGCTTTCTTTGATCTGCTTCACGCCAGTACAT
*
63435666 GAAGACATGATCTG-TTATCTTT
1 GAAGACAAGATCTGCTT-TCTTT
63435688 CAACCTGCTC
Statistics
Matches: 182, Mismatches: 59, Indels: 8
0.73 0.24 0.03
Matches are distributed among these distances:
43 1 0.01
44 81 0.45
45 100 0.55
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTTGATCTGCTTCACGCCAGTACAT
Found at i:63435513 original size:45 final size:45
Alignment explanation
Indices: 63435447--63435653 Score: 200
Period size: 45 Copynumber: 4.6 Consensus size: 45
63435437 GTACATGAAA
* *
63435447 ACAAGATCTGCTTTCTTTGATCTGCTTCGCCACCAGTATGGGAAG
1 ACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTACGGGAAG
* * * * * * * **
63435492 GCAAGATCTGGTATCTCTGATCTACTTC-ACGCCAATACATGAAG
1 ACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTACGGGAAG
* * *
63435536 ACAAGATCTACTTTCTTTGATCTGCTTCGCCACCAGTATGGGAAG
1 ACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTACGGGAAG
* * * * * *
63435581 GCAAGATCTGCTTTCTTCGATCTACTCCACCACCTGTACGGGGAG
1 ACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTACGGGAAG
* * *
63435626 ACAAGATCTGGTATCTATGATCTACTTC
1 ACAAGATCTGCTTTCTTTGATCTACTTC
63435654 ACGCTAGTAC
Statistics
Matches: 123, Mismatches: 38, Indels: 2
0.75 0.23 0.01
Matches are distributed among these distances:
44 32 0.26
45 91 0.74
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (45 bp):
ACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTACGGGAAG
Found at i:63435603 original size:89 final size:89
Alignment explanation
Indices: 63435398--63435606 Score: 294
Period size: 89 Copynumber: 2.3 Consensus size: 89
63435388 TACCGATATA
* * * * ** ** *
63435398 GGAAGACAAGACCTACTATCTTTGATCTGTTTCACGCCGGTACATGAAAACAAGATCTGCTTTCT
1 GGAAGGCAAGATCTGCTATCTCTGATCTACTTCACGCCAATACATGAAAACAAGATCTACTTTCT
63435463 TTGATCTGCTTCGCCACCAGTATG
66 TTGATCTGCTTCGCCACCAGTATG
* *
63435487 GGAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCT
1 GGAAGGCAAGATCTGCTATCTCTGATCTACTTCACGCCAATACATGAAAACAAGATCTACTTTCT
63435552 TTGATCTGCTTCGCCACCAGTATG
66 TTGATCTGCTTCGCCACCAGTATG
*
63435576 GGAAGGCAAGATCTGCTTTCT-TCGATCTACT
1 GGAAGGCAAGATCTGCTATCTCT-GATCTACT
63435607 CCACCACCTG
Statistics
Matches: 106, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
88 1 0.01
89 105 0.99
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (89 bp):
GGAAGGCAAGATCTGCTATCTCTGATCTACTTCACGCCAATACATGAAAACAAGATCTACTTTCT
TTGATCTGCTTCGCCACCAGTATG
Found at i:63447623 original size:23 final size:22
Alignment explanation
Indices: 63447554--63447623 Score: 61
Period size: 23 Copynumber: 3.0 Consensus size: 22
63447544 AAAAATACAT
* *
63447554 ATAAAAAAATGTATATAT-TTC
1 ATAAAAAAATGCATATATATAC
* *
63447575 ATATAAAAATATGCGTATGTACTAC
1 ATA-AAAAA-ATGCATATATA-TAC
63447600 ATGAAAAAAATGCATATATATAC
1 AT-AAAAAAATGCATATATATAC
63447623 A
1 A
63447624 AATTATGTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
21 3 0.08
22 5 0.13
23 11 0.29
24 9 0.24
25 9 0.24
26 1 0.03
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (22 bp):
ATAAAAAAATGCATATATATAC
Found at i:63450874 original size:47 final size:46
Alignment explanation
Indices: 63450785--63450916 Score: 147
Period size: 47 Copynumber: 2.8 Consensus size: 46
63450775 TAATATATTT
* * * * *
63450785 TTTATCATCAATATTATTTTAATTTATAATATATTATTATTTTAAA
1 TTTATCATTAACATTTTTTTAATTTATCATGTATTATTATTTTAAA
*
63450831 TTTATCATTAACATTTTTTTAATTTTATCATGTATTATTATTTTGAA
1 TTTATCATTAACATTTTTTTAA-TTTATCATGTATTATTATTTTAAA
* ** * *
63450878 CTTATCATCTATGATTATTTAAATTTATCATGTATTATT
1 TTTATCAT-TAACATTTTTTTAATTTATCATGTATTATT
63450917 TTATGCATTC
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
46 19 0.26
47 44 0.60
48 10 0.14
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (46 bp):
TTTATCATTAACATTTTTTTAATTTATCATGTATTATTATTTTAAA
Found at i:63450882 original size:24 final size:24
Alignment explanation
Indices: 63450796--63450916 Score: 131
Period size: 23 Copynumber: 5.2 Consensus size: 24
63450786 TTATCATCAA
* *
63450796 TATTATTTT-AATTTATAATATAT
1 TATTATTTTAAATTTATCATGTAT
*
63450819 TATTATTTTAAATTTATCAT-TAA
1 TATTATTTTAAATTTATCATGTAT
* * *
63450842 CATTTTTTTAATTTTATCATGTAT
1 TATTATTTTAAATTTATCATGTAT
* * *
63450866 TATTATTTTGAACTTATCATCTAT
1 TATTATTTTAAATTTATCATGTAT
*
63450890 GATTA-TTTAAATTTATCATGTAT
1 TATTATTTTAAATTTATCATGTAT
63450913 TATT
1 TATT
63450917 TTATGCATTC
Statistics
Matches: 79, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
23 46 0.58
24 33 0.42
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (24 bp):
TATTATTTTAAATTTATCATGTAT
Found at i:63451057 original size:17 final size:19
Alignment explanation
Indices: 63451037--63451074 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
63451027 AATAACTCTC
*
63451037 ATATA-ATAC-TATTTTAT
1 ATATACATACATAGTTTAT
63451054 ATATACATACATAGTTTAT
1 ATATACATACATAGTTTAT
63451073 AT
1 AT
63451075 TAAATTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 4 0.22
19 9 0.50
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (19 bp):
ATATACATACATAGTTTAT
Found at i:63451117 original size:17 final size:18
Alignment explanation
Indices: 63451085--63451118 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63451075 TAAATTTTTC
*
63451085 ATTTTATATATATTATTG
1 ATTTCATATATATTATTG
63451103 ATTTCATAT-TATTATT
1 ATTTCATATATATTATT
63451119 TTTTATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (18 bp):
ATTTCATATATATTATTG
Found at i:63451418 original size:27 final size:28
Alignment explanation
Indices: 63451373--63451431 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
63451363 ATTTTTAATC
* **
63451373 TATTTCAAACTTTCTTATATATATTATT
1 TATTTCAAAATTTCTTATATATACAATT
*
63451401 TATTTTAAAATTT-TTATATATACAATT
1 TATTTCAAAATTTCTTATATATACAATT
63451428 TATT
1 TATT
63451432 GATTATAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 16 0.59
28 11 0.41
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.58
Consensus pattern (28 bp):
TATTTCAAAATTTCTTATATATACAATT
Found at i:63451627 original size:17 final size:18
Alignment explanation
Indices: 63451594--63451631 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
63451584 ATTGCTCTTG
63451594 TGTATTGTATTACTTATT
1 TGTATTGTATTACTTATT
63451612 TGTATT-TATTGA-TTATT
1 TGTATTGTATT-ACTTATT
63451629 TGT
1 TGT
63451632 GGTTCATTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.21, C:0.03, G:0.13, T:0.63
Consensus pattern (18 bp):
TGTATTGTATTACTTATT
Found at i:63453113 original size:104 final size:103
Alignment explanation
Indices: 63452964--63453153 Score: 326
Period size: 104 Copynumber: 1.8 Consensus size: 103
63452954 TACCTTTTCT
* *
63452964 TTCTTTTTTTCTCCTTTAGCTTTTAAGACCTAAAAAGTCTTAAAGAATTTGGGAGTGAGGCTTTC
1 TTCTTTTTTTCTCCTTTAGCTTTTAAGACCTAAAAAGTCTTAAAGAATGTGGGAGTG-GACTTTC
* *
63453029 TTCGTAGACTTCTGTTTGGCTCGGGTTTTCAAGTCTATA
65 TTCATACACTTCTGTTTGGCTCGGGTTTTCAAGTCTATA
63453068 TTCTTTTTTTCTCCTTTAGCTTTTAAGACCTAAAAAGTCTTAAAGAATGTGGGAGTGGACTTTCT
1 TTCTTTTTTTCTCCTTTAGCTTTTAAGACCTAAAAAGTCTTAAAGAATGTGGGAGTGGACTTTCT
*
63453133 TCATACACTTTTGTTTGGCTC
66 TCATACACTTCTGTTTGGCTC
63453154 TACTTTTTAA
Statistics
Matches: 81, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
103 25 0.31
104 56 0.69
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.44
Consensus pattern (103 bp):
TTCTTTTTTTCTCCTTTAGCTTTTAAGACCTAAAAAGTCTTAAAGAATGTGGGAGTGGACTTTCT
TCATACACTTCTGTTTGGCTCGGGTTTTCAAGTCTATA
Found at i:63453207 original size:13 final size:13
Alignment explanation
Indices: 63453189--63453214 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63453179 TAAATTTCCA
63453189 TTGGAAGAAACTT
1 TTGGAAGAAACTT
63453202 TTGGAAGAAACTT
1 TTGGAAGAAACTT
63453215 CCTTGCGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (13 bp):
TTGGAAGAAACTT
Found at i:63454439 original size:72 final size:72
Alignment explanation
Indices: 63454322--63454637 Score: 436
Period size: 72 Copynumber: 4.4 Consensus size: 72
63454312 GTTACTCAGC
* * * *
63454322 TTGATCTTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTCTG
1 TTGATGTTTCAGAAAATCAATTAAATGGCCAAATTCCATTGTCTATAGGGCAGTTATCATCTTTG
*
63454387 AAGTTGT
66 AAGGTGT
* *
63454394 TTGATGTTTCA-AGAAATCAATTAAATGGCCAAATTCCCTTGTCTATAGGGCAGTTGTCATCTTT
1 TTGATGTTTCAGA-AAATCAATTAAATGGCCAAATTCCATTGTCTATAGGGCAGTTATCATCTTT
* *
63454458 GGAGGAGT
65 GAAGGTGT
* * *
63454466 TTCATGTTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG
1 TTGATGTTTCAGAAAATCAATTAAATGGCCAAATTCCATTGTCTATAGGGCAGTTATCATCTTTG
*
63454531 AAGTTGT
66 AAGGTGT
* * * * *
63454538 TTGCTGTTTCAAAAAATCAGTTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTATCATCTTTG
1 TTGATGTTTCAGAAAATCAATTAAATGGCCAAATTCCATTGTCTATAGGGCAGTTATCATCTTTG
* *
63454603 GAGGTAT
66 AAGGTGT
63454610 TTGATGTTTCAGAAAATCAATTAAATGG
1 TTGATGTTTCAGAAAATCAATTAAATGG
63454638 TACTTTTCCT
Statistics
Matches: 210, Mismatches: 32, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
71 1 0.00
72 208 0.99
73 1 0.00
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.36
Consensus pattern (72 bp):
TTGATGTTTCAGAAAATCAATTAAATGGCCAAATTCCATTGTCTATAGGGCAGTTATCATCTTTG
AAGGTGT
Found at i:63454588 original size:144 final size:144
Alignment explanation
Indices: 63454328--63454638 Score: 543
Period size: 144 Copynumber: 2.2 Consensus size: 144
63454318 CAGCTTGATC
63454328 TTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTCTGAAGTTG
1 TTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTCTGAAGTTG
* * *
63454393 TTTGATGTTTCAAGAAATCAATTAAATGGCCAAATTCCCTTGTCTATAGGGCAGTTGTCATCTTT
66 TTTGATGTTTCAAAAAATCAATTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTATCATCTTT
63454458 GGAGG-AGTTTCATG
131 GGAGGTA-TTTCATG
*
63454472 TTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTGAAGTTG
1 TTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTCTGAAGTTG
* *
63454537 TTTGCTGTTTCAAAAAATCAGTTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTATCATCTTT
66 TTTGATGTTTCAAAAAATCAATTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTATCATCTTT
*
63454602 GGAGGTATTTGATG
131 GGAGGTATTTCATG
63454616 TTTCAGAAAATCAATTAAATGGT
1 TTTCAGAAAATCAATTAAATGGT
63454639 ACTTTTCCTC
Statistics
Matches: 159, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
144 158 0.99
145 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.36
Consensus pattern (144 bp):
TTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTCTGAAGTTG
TTTGATGTTTCAAAAAATCAATTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTATCATCTTT
GGAGGTATTTCATG
Found at i:63458368 original size:2 final size:2
Alignment explanation
Indices: 63458356--63458389 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
63458346 AGTCCATTTC
*
63458356 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63458390 TGTTCATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:63460428 original size:6 final size:6
Alignment explanation
Indices: 63460417--63460446 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
63460407 ATATATTAAT
63460417 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
63460447 ATAAAATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:63460462 original size:18 final size:17
Alignment explanation
Indices: 63460439--63460479 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
63460429 TTTTTATTTT
63460439 TATTTTTAATAAA-ATA
1 TATTTTTAATAAATATA
*
63460455 TACTTTTTATTAAATATA
1 TA-TTTTTAATAAATATA
63460473 TATTTTT
1 TATTTTT
63460480 TGGACTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 2 0.09
17 15 0.68
18 5 0.23
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTTTTAATAAATATA
Found at i:63461563 original size:65 final size:68
Alignment explanation
Indices: 63461494--63461621 Score: 172
Period size: 65 Copynumber: 1.9 Consensus size: 68
63461484 CCAAAATAAC
* * *
63461494 ATATAATTTATGAAGAAACTAAAACTTAGAATATAAATAT-T-TATGTGA-AAATTATTTAAATG
1 ATATAATTTATCAAGAAACTAAAACTTAGAATATAAATATGTATATATGAGAAAATATTTAAATG
63461556 TAT
66 TAT
* ** *
63461559 ATATAATTTATCAAGAAATTAAATTTTAGACTATAAATATGTATATATGAGAAAATATTTAAA
1 ATATAATTTATCAAGAAACTAAAACTTAGAATATAAATATGTATATATGAGAAAATATTTAAA
63461622 AACATCAATA
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
65 35 0.66
66 1 0.02
67 6 0.11
68 11 0.21
ACGTcount: A:0.50, C:0.03, G:0.09, T:0.38
Consensus pattern (68 bp):
ATATAATTTATCAAGAAACTAAAACTTAGAATATAAATATGTATATATGAGAAAATATTTAAATG
TAT
Found at i:63468686 original size:17 final size:17
Alignment explanation
Indices: 63468666--63468708 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
63468656 TTTTCAAAAA
63468666 TATAAAATTTTGAAATT
1 TATAAAATTTTGAAATT
*
63468683 TATAAATATTTTGAATTT
1 TATAAA-ATTTTGAAATT
*
63468701 TAAAAAAT
1 TATAAAAT
63468709 ATTTTGAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (17 bp):
TATAAAATTTTGAAATT
Found at i:63468693 original size:18 final size:18
Alignment explanation
Indices: 63468666--63468716 Score: 68
Period size: 19 Copynumber: 2.8 Consensus size: 18
63468656 TTTTCAAAAA
63468666 TATAAA-ATTTTGAAATT
1 TATAAATATTTTGAAATT
*
63468683 TATAAATATTTTGAATTT
1 TATAAATATTTTGAAATT
*
63468701 TAAAAAATATTTTGAA
1 T-ATAAATATTTTGAA
63468717 TTTTTTGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.20
18 11 0.37
19 13 0.43
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (18 bp):
TATAAATATTTTGAAATT
Found at i:63468710 original size:19 final size:18
Alignment explanation
Indices: 63468672--63468720 Score: 71
Period size: 19 Copynumber: 2.7 Consensus size: 18
63468662 AAAATATAAA
* *
63468672 ATTTTGAAATTTATAAAT
1 ATTTTGAATTTTAAAAAT
63468690 ATTTTGAATTTTAAAAAAT
1 ATTTTGAATTTT-AAAAAT
63468709 ATTTTGAATTTT
1 ATTTTGAATTTT
63468721 TTGATAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
18 11 0.39
19 17 0.61
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (18 bp):
ATTTTGAATTTTAAAAAT
Found at i:63469587 original size:15 final size:14
Alignment explanation
Indices: 63469560--63469595 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
63469550 TTTAGTCCAT
63469560 TGATAAATAATAAA
1 TGATAAATAATAAA
*
63469574 TTATAAATTAATAAA
1 TGATAAA-TAATAAA
63469589 TGATAAA
1 TGATAAA
63469596 ATTATACTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (14 bp):
TGATAAATAATAAA
Found at i:63469667 original size:23 final size:22
Alignment explanation
Indices: 63469562--63469673 Score: 79
Period size: 23 Copynumber: 5.0 Consensus size: 22
63469552 TAGTCCATTG
*
63469562 ATAAATAAT-AAATTATAAATTA
1 ATAAATAATAAAATTAT-ATTTA
*
63469584 ATAAATGATAAAATTATACTTTGA
1 ATAAATAATAAAATTATA-TTT-A
*
63469608 CCCA-AAATAAAAAAATTAT-TTTA
1 ---ATAAATAATAAAATTATATTTA
* * *
63469631 AT-TATGATGAAATTATATATTA
1 ATAAATAATAAAATTATAT-TTA
63469653 ATAAATAATAAAATTATATTT
1 ATAAATAATAAAATTATATTT
63469674 TAACTTCTTA
Statistics
Matches: 69, Mismatches: 11, Indels: 20
0.69 0.11 0.20
Matches are distributed among these distances:
20 11 0.16
21 1 0.01
22 16 0.23
23 23 0.33
24 4 0.06
26 13 0.19
27 1 0.01
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (22 bp):
ATAAATAATAAAATTATATTTA
Found at i:63469703 original size:22 final size:23
Alignment explanation
Indices: 63469660--63469703 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
63469650 TTAATAAATA
* *
63469660 ATAAAATTATATTTTAACTTCTT
1 ATAAAATTATAATTCAACTTCTT
*
63469683 ATAAATTTATAATTCAA-TTCT
1 ATAAAATTATAATTCAACTTCT
63469704 AATCACTTGA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (23 bp):
ATAAAATTATAATTCAACTTCTT
Found at i:63472505 original size:16 final size:17
Alignment explanation
Indices: 63472486--63472525 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
63472476 TTTATTTTTT
*
63472486 ATAAAAAAGT-TAAATA
1 ATAAAAAAGTGAAAATA
63472502 ATAAAAAAGTGAAAATA
1 ATAAAAAAGTGAAAATA
63472519 A-AAAAAA
1 ATAAAAAA
63472526 TAAAGAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.17
Consensus pattern (17 bp):
ATAAAAAAGTGAAAATA
Found at i:63473289 original size:7 final size:7
Alignment explanation
Indices: 63473277--63473323 Score: 58
Period size: 7 Copynumber: 6.4 Consensus size: 7
63473267 TAGTCCATTC
63473277 ATAAATT
1 ATAAATT
63473284 ATAAATT
1 ATAAATT
*
63473291 ATAATTT
1 ATAAATT
63473298 ATAAATT
1 ATAAATT
*
63473305 AATAAATG
1 -ATAAATT
63473313 ATAAAATT
1 AT-AAATT
63473321 ATA
1 ATA
63473324 TTTTGACTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
7 22 0.65
8 12 0.35
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (7 bp):
ATAAATT
Found at i:63474513 original size:21 final size:21
Alignment explanation
Indices: 63474484--63474525 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
63474474 TAATCAATAT
*
63474484 TATTTTTTAAAAAATTTAAAA
1 TATTATTTAAAAAATTTAAAA
* *
63474505 TATTATTTAATATATTTAAAA
1 TATTATTTAAAAAATTTAAAA
63474526 CTTAACATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
TATTATTTAAAAAATTTAAAA
Found at i:63491902 original size:19 final size:18
Alignment explanation
Indices: 63491868--63491904 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
63491858 TATTGAACGT
*
63491868 TAACAAAAATGAATAAAA
1 TAACAAAAATAAATAAAA
63491886 TAACAAAAATAATATAAAA
1 TAACAAAAATAA-ATAAAA
63491905 AGGGCAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.73, C:0.05, G:0.03, T:0.19
Consensus pattern (18 bp):
TAACAAAAATAAATAAAA
Found at i:63492685 original size:15 final size:16
Alignment explanation
Indices: 63492665--63492697 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
63492655 CACTTCATGC
*
63492665 TATTTTTTGA-ATTTT
1 TATTTTTTAATATTTT
63492680 TATTTTTTAATATTTT
1 TATTTTTTAATATTTT
63492696 TA
1 TA
63492698 AATTATTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (16 bp):
TATTTTTTAATATTTT
Found at i:63499284 original size:22 final size:22
Alignment explanation
Indices: 63499256--63499300 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
63499246 ACGCCCAGAC
63499256 ACAAAAGCAAACACCACTGTGA
1 ACAAAAGCAAACACCACTGTGA
*
63499278 ACAAAAGCAAACACGACTGTGA
1 ACAAAAGCAAACACCACTGTGA
63499300 A
1 A
63499301 GTACTTAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.51, C:0.24, G:0.16, T:0.09
Consensus pattern (22 bp):
ACAAAAGCAAACACCACTGTGA
Found at i:63500010 original size:11 final size:11
Alignment explanation
Indices: 63499994--63500018 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63499984 GTTTTGAAGG
63499994 TTTGTTTGAAA
1 TTTGTTTGAAA
63500005 TTTGTTTGAAA
1 TTTGTTTGAAA
63500016 TTT
1 TTT
63500019 ACGTATAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (11 bp):
TTTGTTTGAAA
Found at i:63503108 original size:119 final size:119
Alignment explanation
Indices: 63502958--63503176 Score: 296
Period size: 119 Copynumber: 1.8 Consensus size: 119
63502948 TCATTGATAG
* * * * * *
63502958 TAGTGATTAATTTTCTAACCGTGTATACTTTCTGAAAAGTTAAATGAGTGACAATAAAATATGTT
1 TAGTGATTAATCTTCTAACCGTGGATACTTTCCGAAAAGATAAACGAGTGACAATAAAATATATT
*
63503023 CCATTTCCGTGAGCAG-GATTAAAAATTATTCTTTTCGGTATCCATCATCGGTAT
66 CCATTTCCATGAGCAGAGATTAAAAATTATT-TTTTCGGTATCCATCATCGGTAT
* * * *
63503077 TAGTGATTAATCTTCTAACTGTGGATGCTTTCCGAAAAGATAAACGATTGACAATAAAATGTATT
1 TAGTGATTAATCTTCTAACCGTGGATACTTTCCGAAAAGATAAACGAGTGACAATAAAATATATT
* **
63503142 CCATTTTCATGAGTGGAGATTAAAAATTATTTTTT
66 CCATTTCCATGAGCAGAGATTAAAAATTATTTTTT
63503177 AATTATTTAA
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
119 71 0.84
120 14 0.16
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (119 bp):
TAGTGATTAATCTTCTAACCGTGGATACTTTCCGAAAAGATAAACGAGTGACAATAAAATATATT
CCATTTCCATGAGCAGAGATTAAAAATTATTTTTTCGGTATCCATCATCGGTAT
Found at i:63507563 original size:72 final size:72
Alignment explanation
Indices: 63507446--63507758 Score: 439
Period size: 72 Copynumber: 4.3 Consensus size: 72
63507436 AAAAGTACCA
* *
63507446 TTTAATTGATTTTCTGAAACATCAAACAACTTCAAAGATGATAACTGCCCTATAGACCAGGGAAT
1 TTTAATTGATTTTCTGAAACATCAAACAACTTCAAAGATGATAACTCCCCTATAGACAAGGGAAT
63507511 TTGGCCG
66 TTGGCCG
* * *
63507518 TTTAACTGATTTTTTGAAACATCAAACAACTTCAAAGATGATAACTCCCCTATAGACAATGGAAT
1 TTTAATTGATTTTCTGAAACATCAAACAACTTCAAAGATGATAACTCCCCTATAGACAAGGGAAT
* *
63507583 TTGACCA
66 TTGGCCG
** * *
63507590 TTTAATTGATTTTCTGAAACATCAAACTTCTCCAAAGATG-TCAACTGCCCTATAGACAAGGGAA
1 TTTAATTGATTTTCTGAAACATCAAACAACTTCAAAGATGAT-AACTCCCCTATAGACAAGGGAA
63507654 TTTGGCCG
65 TTTGGCCG
* * *
63507662 TTTAATTGATTTTTTGAAACATCAAACAACTTCAAAGACGATAACTCCCCTATAGACAATGGAAT
1 TTTAATTGATTTTCTGAAACATCAAACAACTTCAAAGATGATAACTCCCCTATAGACAAGGGAAT
** *
63507727 TTGATCA
66 TTGGCCG
* *
63507734 TTTAATTGATTTACTGAAAGATCAA
1 TTTAATTGATTTTCTGAAACATCAA
63507759 GCTGAGTAAC
Statistics
Matches: 210, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
71 1 0.00
72 208 0.99
73 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (72 bp):
TTTAATTGATTTTCTGAAACATCAAACAACTTCAAAGATGATAACTCCCCTATAGACAAGGGAAT
TTGGCCG
Found at i:63507705 original size:144 final size:144
Alignment explanation
Indices: 63507442--63507758 Score: 537
Period size: 144 Copynumber: 2.2 Consensus size: 144
63507432 GAGGAAAAGT
* *
63507442 ACCATTTAATTGATTTTCTGAAACATCAAACAACTTCAAAGATGATAACTGCCCTATAGACCAGG
1 ACCATTTAATTGATTTTCTGAAACATCAAACAACTCCAAAGATGATAACTGCCCTATAGACAAGG
*
63507507 GAATTTGGCCGTTTAACTGATTTTTTGAAACATCAAACAACTTCAAAGATGATAACTCCCCTATA
66 GAATTTGGCCGTTTAACTGATTTTTTGAAACATCAAACAACTTCAAAGACGATAACTCCCCTATA
63507572 GACAATGGAATTTG
131 GACAATGGAATTTG
**
63507586 ACCATTTAATTGATTTTCTGAAACATCAAACTTCTCCAAAGATG-TCAACTGCCCTATAGACAAG
1 ACCATTTAATTGATTTTCTGAAACATCAAACAACTCCAAAGATGAT-AACTGCCCTATAGACAAG
*
63507650 GGAATTTGGCCGTTTAATTGATTTTTTGAAACATCAAACAACTTCAAAGACGATAACTCCCCTAT
65 GGAATTTGGCCGTTTAACTGATTTTTTGAAACATCAAACAACTTCAAAGACGATAACTCCCCTAT
63507715 AGACAATGGAATTTG
130 AGACAATGGAATTTG
* * *
63507730 ATCATTTAATTGATTTACTGAAAGATCAA
1 ACCATTTAATTGATTTTCTGAAACATCAA
63507759 GCTGAGTAAC
Statistics
Matches: 163, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
143 1 0.01
144 162 0.99
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.31
Consensus pattern (144 bp):
ACCATTTAATTGATTTTCTGAAACATCAAACAACTCCAAAGATGATAACTGCCCTATAGACAAGG
GAATTTGGCCGTTTAACTGATTTTTTGAAACATCAAACAACTTCAAAGACGATAACTCCCCTATA
GACAATGGAATTTG
Found at i:63510135 original size:66 final size:66
Alignment explanation
Indices: 63510048--63510179 Score: 246
Period size: 66 Copynumber: 2.0 Consensus size: 66
63510038 GAATTGCCTG
63510048 CATATAACGAATAATAAAGGTTGAAGCTTTTGCCCTTGCCCATGCCTTAACCATGCCATACATCC
1 CATATAACGAATAATAAAGGTTGAAGCTTTTGCCCTTGCCCATGCCTTAACCATGCCATACATCC
63510113 A
66 A
* *
63510114 CATATAACGAATTATACAGGTTGAAGCTTTTGCCCTTGCCCATGCCTTAACCATGCCATACATCC
1 CATATAACGAATAATAAAGGTTGAAGCTTTTGCCCTTGCCCATGCCTTAACCATGCCATACATCC
63510179 A
66 A
63510180 TTCTTATTTA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (66 bp):
CATATAACGAATAATAAAGGTTGAAGCTTTTGCCCTTGCCCATGCCTTAACCATGCCATACATCC
A
Found at i:63511162 original size:18 final size:18
Alignment explanation
Indices: 63511139--63511182 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
63511129 TAACAATAAC
*
63511139 GATAATAACAATGATGAT
1 GATAATAACAATAATGAT
*
63511157 GATAATAATAATAATGAT
1 GATAATAACAATAATGAT
*
63511175 AATAATAA
1 GATAATAA
63511183 TCTAAGTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.57, C:0.02, G:0.11, T:0.30
Consensus pattern (18 bp):
GATAATAACAATAATGAT
Found at i:63511183 original size:15 final size:15
Alignment explanation
Indices: 63511103--63511179 Score: 68
Period size: 15 Copynumber: 4.9 Consensus size: 15
63511093 CATAAACAAT
63511103 AATAATGATGAA-AAC
1 AATAATGAT-AATAAC
*
63511118 GATAAT-ATAAATAAC
1 AATAATGAT-AATAAC
*
63511133 AATAACGATAATAAC
1 AATAATGATAATAAC
*
63511148 AATGATGATGATAATAAT
1 AAT-A--ATGATAATAAC
63511166 AATAATGATAATAA
1 AATAATGATAATAA
63511180 TAATCTAAGT
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
14 4 0.08
15 31 0.61
16 3 0.06
17 1 0.02
18 12 0.24
ACGTcount: A:0.58, C:0.05, G:0.10, T:0.26
Consensus pattern (15 bp):
AATAATGATAATAAC
Done.