Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 217 of 226
Found at i:64802327 original size:23 final size:23
Alignment explanation
Indices: 64802301--64802395 Score: 154
Period size: 23 Copynumber: 4.1 Consensus size: 23
64802291 GTTATTGATT
*
64802301 AGTGGTAGCTTCGGCTACGTTTC
1 AGTGGTAGCTTCGGCTACATTTC
64802324 AGTGGTAGCTTCGGCTACATTTC
1 AGTGGTAGCTTCGGCTACATTTC
**
64802347 AGTGGTAGCTTCGGCTACATAAC
1 AGTGGTAGCTTCGGCTACATTTC
*
64802370 AGTGGTAGCTTCGGCTACATATC
1 AGTGGTAGCTTCGGCTACATTTC
64802393 AGT
1 AGT
64802396 ATTGCACTTC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 68 1.00
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
AGTGGTAGCTTCGGCTACATTTC
Found at i:64809018 original size:15 final size:16
Alignment explanation
Indices: 64808998--64809029 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
64808988 TTTAAATATA
64808998 TAATAAAA-ATAAAAT
1 TAATAAAACATAAAAT
64809013 TAATAAAACATAAAAT
1 TAATAAAACATAAAAT
64809029 T
1 T
64809030 TTATCATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (16 bp):
TAATAAAACATAAAAT
Found at i:64828411 original size:19 final size:18
Alignment explanation
Indices: 64828387--64828425 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 18
64828377 TTCTAACATA
64828387 TATCTACCTAAATAAGATT
1 TATCTACCTAAATAA-ATT
64828406 TATCTACCTAAATAAATT
1 TATCTACCTAAATAAATT
64828424 TA
1 TA
64828426 AAATATATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.44, C:0.15, G:0.03, T:0.38
Consensus pattern (18 bp):
TATCTACCTAAATAAATT
Found at i:64830264 original size:6 final size:6
Alignment explanation
Indices: 64830253--64830320 Score: 127
Period size: 6 Copynumber: 11.3 Consensus size: 6
64830243 ATTATTAATA
*
64830253 TTCTTT TCCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT
1 TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT
64830301 TTCTTT TTCTTT TTCTTT TT
1 TTCTTT TTCTTT TTCTTT TT
64830321 GCTTAAGAAT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 60 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (6 bp):
TTCTTT
Found at i:64830516 original size:111 final size:111
Alignment explanation
Indices: 64830316--64830732 Score: 708
Period size: 111 Copynumber: 3.7 Consensus size: 111
64830306 TTTCTTTTTC
* ** *
64830316 TTTTTGCTTAAGAATATATTGAACCTTTTGACGCGAAAAGAGACAACAGCCAAGCACCCCACCCT
1 TTTTT-CTTAAGAATATATTGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCC
* *
64830381 GGTTACTCAGCCTAACATACTCCTAATTTATTATATTTAAATATATA
65 GGTTACTCAACCCAACATACTCCTAATTTATTATATTTAAATATATA
*
64830428 TTTTTCTTAAGAATATATTGAACTTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCCG
1 TTTTTCTTAAGAATATATTGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCCG
*
64830493 GTTACTCAACCCAACATACTCCTAATTTGTTATATTTAAATATATA
66 GTTACTCAACCCAACATACTCCTAATTTATTATATTTAAATATATA
* *
64830539 TTTTTCTTAAGAATATATTGAACTTTTTGACGCGAAGAGAGATGATAGCCAAGCACCCCACCCCG
1 TTTTTCTTAAGAATATATTGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCCG
64830604 GTTACTCAACCCAACATACTCCTAATTTATTATATTTAAATATATA
66 GTTACTCAACCCAACATACTCCTAATTTATTATATTTAAATATATA
* *
64830650 TTTTTCTTAAGAATATATTGAACCTTTTGACGCAAAGAGAGATGACAGTCAAGCACCCCACCCCG
1 TTTTTCTTAAGAATATATTGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCCG
*
64830715 GTTACTCAGCCCAACATA
66 GTTACTCAACCCAACATA
64830733 TTCTTAAAAA
Statistics
Matches: 290, Mismatches: 15, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
111 285 0.98
112 5 0.02
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (111 bp):
TTTTTCTTAAGAATATATTGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCCG
GTTACTCAACCCAACATACTCCTAATTTATTATATTTAAATATATA
Found at i:64835385 original size:6 final size:6
Alignment explanation
Indices: 64835374--64835402 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
64835364 ATAATGGTAG
64835374 CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
1 CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
64835403 TTCAACACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.17
Consensus pattern (6 bp):
CAGTAA
Found at i:64835433 original size:45 final size:45
Alignment explanation
Indices: 64835382--64835486 Score: 167
Period size: 45 Copynumber: 2.3 Consensus size: 45
64835372 AGCAGTAACA
*
64835382 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCT-
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAAT-TG
* *
64835427 GTAACAGTAACGGTAACAGTATTCGACACACAAAGTGCCGAATTG
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATTG
64835472 GTAACAGTAACAGTA
1 GTAACAGTAACAGTA
64835487 GTCGGCACAT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
44 1 0.02
45 54 0.98
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATTG
Found at i:64836467 original size:16 final size:17
Alignment explanation
Indices: 64836442--64836473 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
64836432 TAAACCCTAA
64836442 TTTTTCCTTTCTTTCTC
1 TTTTTCCTTTCTTTCTC
64836459 TTTTT-CTTTCTTTCT
1 TTTTTCCTTTCTTTCT
64836474 TTCTCCCCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTTCCTTTCTTTCTC
Found at i:64838799 original size:17 final size:17
Alignment explanation
Indices: 64838777--64838810 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
64838767 GTTTTTAAGG
64838777 TCTGTACTAATAAAAGC
1 TCTGTACTAATAAAAGC
64838794 TCTGTACTAATAAAAGC
1 TCTGTACTAATAAAAGC
64838811 ATGGCAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (17 bp):
TCTGTACTAATAAAAGC
Found at i:64858606 original size:17 final size:18
Alignment explanation
Indices: 64858573--64858606 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64858563 AAAATTTTAA
64858573 TAAAATATATAATAGTAG
1 TAAAATATATAATAGTAG
*
64858591 TAAAATTTAT-ATAGTA
1 TAAAATATATAATAGTA
64858607 AATAAATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (18 bp):
TAAAATATATAATAGTAG
Found at i:64858612 original size:18 final size:18
Alignment explanation
Indices: 64858570--64858616 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
64858560 TTTAAAATTT
64858570 TAATAAAATATATAATAG
1 TAATAAAATATATAATAG
* *
64858588 TAGTAAAATTTAT-ATAG
1 TAATAAAATATATAATAG
64858605 TAA-ATAAATATA
1 TAATA-AAATATA
64858617 ATTATGTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
16 1 0.04
17 12 0.50
18 11 0.46
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.36
Consensus pattern (18 bp):
TAATAAAATATATAATAG
Found at i:64864198 original size:14 final size:13
Alignment explanation
Indices: 64864179--64864212 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
64864169 AAAGAAAAAA
64864179 GAGAGAGAGAGAGT
1 GAGAGAGAGAGA-T
64864193 GAGAGAGAGAGAT
1 GAGAGAGAGAGAT
64864206 G-GAGAGA
1 GAGAGAGA
64864213 ATATGTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 6 0.30
13 2 0.10
14 12 0.60
ACGTcount: A:0.44, C:0.00, G:0.50, T:0.06
Consensus pattern (13 bp):
GAGAGAGAGAGAT
Found at i:64881014 original size:36 final size:36
Alignment explanation
Indices: 64880974--64881053 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 36
64880964 ATACATATAA
* *
64880974 ATATATATACT-TATAAAAATAAAAAT-ATGTATATGT
1 ATATATATA-TATATAAAAAGAAAAATGA-GTATACGT
* *
64881010 ATATAGATATATATAAAAAGAAATATGAGTATACGT
1 ATATATATATATATAAAAAGAAAAATGAGTATACGT
64881046 ATATATAT
1 ATATATAT
64881054 TAAACAAATT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
35 1 0.03
36 35 0.95
37 1 0.03
ACGTcount: A:0.53, C:0.03, G:0.09, T:0.36
Consensus pattern (36 bp):
ATATATATATATATAAAAAGAAAAATGAGTATACGT
Found at i:64881126 original size:22 final size:23
Alignment explanation
Indices: 64881100--64881148 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
64881090 TACAAGCACT
*
64881100 TATA-TGATAATA-ATAAGATATA
1 TATATTGAAAATACATAAG-TATA
64881122 TATATTTGAAAATACATAAGTATA
1 TATA-TTGAAAATACATAAGTATA
64881146 TAT
1 TAT
64881149 GAATAGAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 4 0.17
24 14 0.61
25 5 0.22
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.39
Consensus pattern (23 bp):
TATATTGAAAATACATAAGTATA
Found at i:64881193 original size:3 final size:3
Alignment explanation
Indices: 64881182--64881240 Score: 75
Period size: 3 Copynumber: 19.7 Consensus size: 3
64881172 CAATAATACC
* * *
64881182 AAT ACT AAT AAT AGT AA- AGAT GAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
64881227 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
64881241 AGTTAACAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
2 1 0.02
3 47 0.98
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:64882929 original size:21 final size:21
Alignment explanation
Indices: 64882905--64882948 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
64882895 AGATAGGATA
64882905 GTGTCTTCGA-TCCGCTCCGCT
1 GTGTCTTCGACT-CGCTCCGCT
*
64882926 GTGTCTTCGACTTGCTCCGCT
1 GTGTCTTCGACTCGCTCCGCT
64882947 GT
1 GT
64882949 AATCTTAGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.05, C:0.34, G:0.25, T:0.36
Consensus pattern (21 bp):
GTGTCTTCGACTCGCTCCGCT
Found at i:64883166 original size:87 final size:84
Alignment explanation
Indices: 64883075--64883355 Score: 243
Period size: 87 Copynumber: 3.3 Consensus size: 84
64883065 ATCTACTCTA
*
64883075 CTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA-CTTCAGGGAGATAG
1 CTGTAACTTCAGAGAGATAAGATCC--TATTTTGATCCGCTCCACTGTAATC-TCAGGGAGATAG
64883139 GATTATATCTTCGATCTGCTCCG
63 GATTATATCTT-GATCTGCTCCG
* * * * * * *
64883162 CTGTAACCTCAGGGAGACAAGATCTGCAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAGATA
1 CTGTAACTTCAGAGAGATAAGATC--CTATT-TT-GATCCGCTCCACTGTAATCTCAGGGAGATA
* * * * * **
64883227 AGACCT-GAT-GTGATCTTCTCTA
62 GGA-TTATATCTTGATCTGCTCCG
* *
64883249 CTGTAACTTCAGAGAGATAAGATCC---TTTGATCCGCTCCATTGTAATCTCAAGGAGATAGGAT
1 CTGTAACTTCAGAGAGATAAGATCCTATTTTGATCCGCTCCACTGTAATCTCAGGGAGATAGGAT
64883311 TACTATCTTTGATCTGCTCCG
66 TA-TATC-TTGATCTGCTCCG
*
64883332 CTGTAA-TCTCAGGGAGATAAGATC
1 CTGTAACT-TCAGAGAGATAAGATC
64883356 TCTGGCTTCA
Statistics
Matches: 152, Mismatches: 31, Indels: 26
0.73 0.15 0.12
Matches are distributed among these distances:
79 1 0.01
80 27 0.18
81 4 0.03
82 2 0.01
83 30 0.20
85 1 0.01
87 53 0.35
88 3 0.02
89 29 0.19
90 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (84 bp):
CTGTAACTTCAGAGAGATAAGATCCTATTTTGATCCGCTCCACTGTAATCTCAGGGAGATAGGAT
TATATCTTGATCTGCTCCG
Found at i:64883212 original size:46 final size:44
Alignment explanation
Indices: 64882929--64883356 Score: 250
Period size: 44 Copynumber: 9.9 Consensus size: 44
64882919 CTCCGCTGTG
* * *
64882929 TCTTCGA-CTTGCTCCGCTGTAATCTTAGGGAGATAAGACCTCTG--
1 TCTTCGATC-TGCTCCACTGTAACCTCAGGGAGATAAGA--TCTGAT
* *
64882973 GCTTCAATCTGCTCCACTGTAACCTCAGGG-GATAAGATCTGCAAT
1 TCTTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTG--AT
* * * *
64883018 TCTTCGGTCTACTCCACTGTAACCTCAGAGAGATAAGACCTGA-
1 TCTTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAT
* * * * * *
64883061 --TGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAT
1 TCTTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-C-TGAT
* * * *
64883105 T-TT-AATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-T-AT
1 TCTTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAT
* *
64883145 ATCTTCGATCTGCTCCGCTGTAACCTCAGGGAGACAAGATCTGCAAT
1 -TCTTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTG--AT
* * * *
64883192 TCTTCGGTCTGTTCCACTGTAATCTCAGGGAGATAAGACCTGA-
1 TCTTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAT
* * * * *
64883235 T-GT-GATCTTCTCTACTGTAACTTCAGAGAGATAAGATC----
1 TCTTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAT
* * * * * *
64883273 -CTTTGATCCGCTCCATTGTAATCTCAAGGAGATAGGAT-T-ACT
1 TCTTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGA-T
* * *
64883315 ATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
1 -TCTTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
64883357 CTGGCTTCAA
Statistics
Matches: 298, Mismatches: 60, Indels: 51
0.73 0.15 0.12
Matches are distributed among these distances:
38 1 0.00
39 25 0.08
40 2 0.01
41 65 0.22
42 4 0.01
43 38 0.13
44 87 0.29
45 28 0.09
46 46 0.15
47 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (44 bp):
TCTTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAT
Found at i:64883250 original size:174 final size:170
Alignment explanation
Indices: 64882974--64883356 Score: 565
Period size: 174 Copynumber: 2.2 Consensus size: 170
64882964 AGACCTCTGG
* *
64882974 CTTCAATCTGCTCCACTGTAACCTCAGGG-GATAAGATCTGCAATTCTTCGGTCTACTCCACTGT
1 CTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTACTCCACTGT
64883038 AACCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
66 AACCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCC---
*
64883103 ATTTTAATCCGCTCCACTGTAA-CTTCAGGGAGATAGGATTA-TAT
128 --TTTAATCCGCTCCACTGTAATC-TCAAGGAGATAGGATTACTAT
* **
64883147 CTTCGATCTGCTCCGCTGTAACCTCAGGGAGACAAGATCTGCAATTCTTCGGTCTGTTCCACTGT
1 CTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTACTCCACTGT
* * * *
64883212 AATCTCAGGGAGATAAGACCTGATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTT
66 AACCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
* *
64883277 GATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTAT
131 AATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACTAT
* *
64883317 CTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
1 CTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCT
64883357 CTGGCTTCAA
Statistics
Matches: 192, Mismatches: 15, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
169 34 0.18
170 41 0.21
173 27 0.14
174 90 0.47
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (170 bp):
CTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTACTCCACTGT
AACCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
AATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACTAT
Found at i:64883266 original size:41 final size:41
Alignment explanation
Indices: 64882979--64883270 Score: 158
Period size: 41 Copynumber: 6.8 Consensus size: 41
64882969 TCTGGCTTCA
* * *
64882979 ATCTGCTCCACTGTAACCTCAG-GGGATAAGATCTGCAATTCTTCG
1 ATCTGCTCCACTGTAACTTCAGAGAGATAAGACCTG--A-T-TT-G
* * * **
64883024 GTCTACTCCACTGTAACCTCAGAGAGATAAGACCTGATGCG
1 ATCTGCTCCACTGTAACTTCAGAGAGATAAGACCTGATTTG
* * * *
64883065 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAACTTCAGAGAGATAAGA-CC-TGA-TTTG
* * * * *
64883109 ATCCGCTCCACTGTAACTTCAGGGAGATAGGA-TTATATCTTCG
1 ATCTGCTCCACTGTAACTTCAGAGAGATAAGACCT-GAT-TT-G
* * * * *
64883152 ATCTGCTCCGCTGTAACCTCAGGGAGACAAGATCTGCAATTCTTCG
1 ATCTGCTCCACTGTAACTTCAGAGAGATAAGACCTG--A-T-TT-G
* * * *
64883198 GTCTGTTCCACTGTAA-TCTCAGGGAGATAAGACCTGATGTG
1 ATCTGCTCCACTGTAACT-TCAGAGAGATAAGACCTGATTTG
* *
64883239 ATCTTCTCTACTGTAACTTCAGAGAGATAAGA
1 ATCTGCTCCACTGTAACTTCAGAGAGATAAGA
64883271 TCCTTTGATC
Statistics
Matches: 195, Mismatches: 39, Indels: 30
0.74 0.15 0.11
Matches are distributed among these distances:
41 58 0.30
42 8 0.04
43 31 0.16
44 31 0.16
45 21 0.11
46 46 0.24
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (41 bp):
ATCTGCTCCACTGTAACTTCAGAGAGATAAGACCTGATTTG
Found at i:64883419 original size:85 final size:85
Alignment explanation
Indices: 64883316--64883526 Score: 232
Period size: 85 Copynumber: 2.5 Consensus size: 85
64883306 AGGATTACTA
* * * *
64883316 TCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCT-GCTCCAATG
1 TCTTTGATCTGCTTCGCTGTAAT-GCAGGAAGACAAGATCTACT-GCTTCAA-CTAGCTCCAATG
64883379 CAACCGATGGA-GCAAGGCTTTG
63 CAACCGATGGATGCAAGGCTTTG
* * * *
64883401 TCTTTGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTACTTCTTTAACTAGCTCCACTGCA
1 TCTTTGATCTGCTTCGCTG-TAATGCAGGAAGACAAGATCTACTGCTTCAACTAGCTCCAATGCA
*
64883466 ATCGATGGATGCAAGGCTTTG
65 ACCGATGGATGCAAGGCTTTG
* * *
64883487 T-TTTCGATCTGCTTCGCTGTCAATGTAGAAAGGCAAGATC
1 TCTTT-GATCTGCTTCGCTGT-AATGCAGGAAGACAAGATC
64883527 CTTTGTCTTC
Statistics
Matches: 109, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
84 2 0.02
85 58 0.53
86 49 0.45
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (85 bp):
TCTTTGATCTGCTTCGCTGTAATGCAGGAAGACAAGATCTACTGCTTCAACTAGCTCCAATGCAA
CCGATGGATGCAAGGCTTTG
Found at i:64883505 original size:86 final size:85
Alignment explanation
Indices: 64883370--64883526 Score: 244
Period size: 86 Copynumber: 1.8 Consensus size: 85
64883360 GCTTCAATCT
* *
64883370 GCTCCAATGCAACCGATGGAGCAAGGCTTTGTCTTTGATCTGCTTCGCTGTTAATGCAGGAAGGC
1 GCTCCAATGCAACCGATGGAGCAAGGCTTTGTCTTTGATCTGCTTCGCTGTCAATGCAGAAAGGC
64883435 AAGATCTACTTCTTTAACTA
66 AAGATCTACTTCTTTAACTA
* * *
64883455 GCTCCACTGCAATCGATGGATGCAAGGCTTTGT-TTTCGATCTGCTTCGCTGTCAATGTAGAAAG
1 GCTCCAATGCAACCGATGGA-GCAAGGCTTTGTCTTT-GATCTGCTTCGCTGTCAATGCAGAAAG
64883519 GCAAGATC
64 GCAAGATC
64883527 CTTTGTCTTC
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
85 21 0.32
86 44 0.68
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (85 bp):
GCTCCAATGCAACCGATGGAGCAAGGCTTTGTCTTTGATCTGCTTCGCTGTCAATGCAGAAAGGC
AAGATCTACTTCTTTAACTA
Found at i:64891812 original size:85 final size:85
Alignment explanation
Indices: 64891709--64891917 Score: 219
Period size: 86 Copynumber: 2.4 Consensus size: 85
64891699 AGGATTACTA
* * * * * *
64891709 TCTTTGATCTGCTCCGCTGTAATCTCAGGGATATAAG-ATC-TCTGCTTCAATCTGCTCCAA-TG
1 TCTTTGATCTGCTTCGCTGTAAT-GCAGGAAGACAAGAATCTTCTGCTTCAAT-AGCTCCAACTG
64891771 CAACCGATGGAGGCAAGGCTTTG
64 CAACC-ATGGAGGCAAGGCTTTG
* * *
64891794 TCTTTGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGAATCTTCTTCTTTAATAGCTCCAACTGC
1 TCTTTGATCTGCTTCGCTG-TAATGCAGGAAGACAAGAATCTTCTGCTTCAATAGCTCCAACTGC
* *
64891859 AATCATGGATGCAAGGCTTTG
65 AACCATGGAGGCAAGGCTTTG
* *
64891880 T-TTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGA
1 TCTTT-GATCTGCTTCGCTGT-AATGCAGGAAGACAAGA
64891918 TCCTTTGTCT
Statistics
Matches: 106, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
85 30 0.28
86 61 0.58
87 15 0.14
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (85 bp):
TCTTTGATCTGCTTCGCTGTAATGCAGGAAGACAAGAATCTTCTGCTTCAATAGCTCCAACTGCA
ACCATGGAGGCAAGGCTTTG
Found at i:64893170 original size:1 final size:1
Alignment explanation
Indices: 64893164--64893190 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
64893154 CTCTCCAAAG
64893164 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
64893191 AGGAAGCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:64904535 original size:36 final size:36
Alignment explanation
Indices: 64904495--64904574 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 36
64904485 ATACATATAA
* *
64904495 ATATATATACT-TATAAAAATAAAAAT-ATGTATATGT
1 ATATATATA-TATATAAAAAGAAAAATGA-GTATACGT
* *
64904531 ATATAGATATATATAAAAAGAAATATGAGTATACGT
1 ATATATATATATATAAAAAGAAAAATGAGTATACGT
64904567 ATATATAT
1 ATATATAT
64904575 TAAACAAATT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
35 1 0.03
36 35 0.95
37 1 0.03
ACGTcount: A:0.53, C:0.03, G:0.09, T:0.36
Consensus pattern (36 bp):
ATATATATATATATAAAAAGAAAAATGAGTATACGT
Found at i:64904647 original size:22 final size:23
Alignment explanation
Indices: 64904621--64904669 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
64904611 TACAAGCACT
*
64904621 TATA-TGATAATA-ATAAGATATA
1 TATATTGAAAATACATAAG-TATA
64904643 TATATTTGAAAATACATAAGTATA
1 TATA-TTGAAAATACATAAGTATA
64904667 TAT
1 TAT
64904670 GAATAGAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 4 0.17
24 14 0.61
25 5 0.22
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.39
Consensus pattern (23 bp):
TATATTGAAAATACATAAGTATA
Found at i:64904714 original size:3 final size:3
Alignment explanation
Indices: 64904703--64904752 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
64904693 CAATAATACC
* * *
64904703 AAT ACT AAT AAT AGT AA- AGAT GAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
64904748 AAT AA
1 AAT AA
64904753 AGTTAACAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 1 0.03
3 38 0.97
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:64913163 original size:28 final size:28
Alignment explanation
Indices: 64913108--64913164 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
64913098 TAAGATTTTT
* * * *
64913108 AAATTTTTTGTTCATGTTTGTTTATTTA
1 AAATTTTGTGTTCAAGTTCGCTTATTTA
*
64913136 AAATTTTGTGTTCAAGTTCGCTTGTTTA
1 AAATTTTGTGTTCAAGTTCGCTTATTTA
64913164 A
1 A
64913165 TGTTCACAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.23, C:0.07, G:0.14, T:0.56
Consensus pattern (28 bp):
AAATTTTGTGTTCAAGTTCGCTTATTTA
Found at i:64914496 original size:16 final size:17
Alignment explanation
Indices: 64914477--64914519 Score: 61
Period size: 16 Copynumber: 2.5 Consensus size: 17
64914467 TTTATTTTAA
64914477 TAATTTAATAAAG-AAT
1 TAATTTAATAAAGTAAT
*
64914493 TAATTTAATAAAGTATT
1 TAATTTAATAAAGTAAT
64914510 TAATATTAAT
1 TAAT-TTAAT
64914520 TTTATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 13 0.54
17 6 0.25
18 5 0.21
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (17 bp):
TAATTTAATAAAGTAAT
Found at i:64914528 original size:17 final size:18
Alignment explanation
Indices: 64914508--64914541 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64914498 TAATAAAGTA
*
64914508 TTTAAT-ATTAATTTTAT
1 TTTAATAATAAATTTTAT
64914525 TTTAATAATAAATTTTA
1 TTTAATAATAAATTTTA
64914542 AAAATAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTAATAATAAATTTTAT
Found at i:64914940 original size:19 final size:19
Alignment explanation
Indices: 64914913--64914957 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
64914903 TTGAAATCTA
64914913 AAAAGTATGACTAAATTTCC
1 AAAA-TATGACTAAATTTCC
*
64914933 AAAATATGACTAAATTTTC
1 AAAATATGACTAAATTTCC
64914952 AAAATA
1 AAAATA
64914958 GAAGTATAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 20 0.83
20 4 0.17
ACGTcount: A:0.51, C:0.11, G:0.07, T:0.31
Consensus pattern (19 bp):
AAAATATGACTAAATTTCC
Found at i:64915448 original size:15 final size:14
Alignment explanation
Indices: 64915426--64915459 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
64915416 AAAATTAATC
*
64915426 TATTTTTTAAAAAT
1 TATTTTTTTAAAAT
64915440 TATTTTTTTAAAAT
1 TATTTTTTTAAAAT
64915454 TATTTT
1 TATTTT
64915460 CAATGAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TATTTTTTTAAAAT
Found at i:64922206 original size:2 final size:2
Alignment explanation
Indices: 64922199--64922229 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
64922189 TATAATAAGG
*
64922199 TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
64922230 GAAAATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:64922209 original size:22 final size:22
Alignment explanation
Indices: 64922150--64922214 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
64922140 ATTTAAAAAG
*
64922150 AGATATAGGTATATATACATAATA
1 AGATATA--TATATATATATAATA
* * *
64922174 AGATATAAAGATATTTATAATA
1 AGATATATATATATATATAATA
*
64922196 AGGTATATATATATATATA
1 AGATATATATATATATATA
64922215 TATATATATG
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
22 26 0.79
24 7 0.21
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.37
Consensus pattern (22 bp):
AGATATATATATATATATAATA
Found at i:64922486 original size:16 final size:13
Alignment explanation
Indices: 64922456--64922480 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64922446 TCAACAAGAA
64922456 ATAATAATACTAT
1 ATAATAATACTAT
64922469 ATAATAATACTA
1 ATAATAATACTA
64922481 AAATATTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (13 bp):
ATAATAATACTAT
Found at i:64924953 original size:6 final size:6
Alignment explanation
Indices: 64924942--64924966 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
64924932 AATGTTATTT
64924942 TTTTAA TTTTAA TTTTAA TTTTAA T
1 TTTTAA TTTTAA TTTTAA TTTTAA T
64924967 AAAATAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTTAA
Found at i:64931609 original size:37 final size:36
Alignment explanation
Indices: 64931566--64931639 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 36
64931556 TTAACGGTTA
*
64931566 TAAATTTTAAAATAT-TAAAAATTAAAAAAATAAAAAT
1 TAAA-TTTAAAATATATAAAAAATAAAAAAA-AAAAAT
* * *
64931603 TAAATTTCAAATTTATAAAAAATACAAAAAAAAAAT
1 TAAATTTAAAATATATAAAAAATAAAAAAAAAAAAT
64931639 T
1 T
64931640 GTTACATATT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
36 15 0.47
37 17 0.53
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (36 bp):
TAAATTTAAAATATATAAAAAATAAAAAAAAAAAAT
Found at i:64934406 original size:54 final size:56
Alignment explanation
Indices: 64934347--64934451 Score: 137
Period size: 54 Copynumber: 1.9 Consensus size: 56
64934337 GAATTTTTTT
* * *
64934347 TAAATTTT-AACTTTTTAATATA-TATTTTGGAATTTTT-ATAATT-TTTTAAAAATA
1 TAAATTTTGAA-TTTTTAAAAAATTATTTT-GAATTTTTGAAAATTATTTTAAAAATA
64934401 TAAATTTTGAATTTTTAAAAAATTATTTTGAATTTTTGAAAATTATTTTAA
1 TAAATTTTGAATTTTTAAAAAATTATTTTGAATTTTTGAAAATTATTTTAA
64934452 TTATTTTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
54 25 0.57
55 13 0.30
56 6 0.14
ACGTcount: A:0.40, C:0.01, G:0.05, T:0.54
Consensus pattern (56 bp):
TAAATTTTGAATTTTTAAAAAATTATTTTGAATTTTTGAAAATTATTTTAAAAATA
Found at i:64934442 original size:20 final size:21
Alignment explanation
Indices: 64934389--64934453 Score: 80
Period size: 21 Copynumber: 3.1 Consensus size: 21
64934379 TTTTTATAAT
*
64934389 TTTTTAAAAATATAAATTTTGAA
1 TTTTTAAAAA-AT-TATTTTGAA
64934412 TTTTTAAAAAATTATTTTGAA
1 TTTTTAAAAAATTATTTTGAA
*
64934433 TTTTT-GAAAATTATTTT-AA
1 TTTTTAAAAAATTATTTTGAA
64934452 TT
1 TT
64934454 ATTTTTTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.10
20 11 0.28
21 13 0.32
22 2 0.05
23 10 0.25
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.54
Consensus pattern (21 bp):
TTTTTAAAAAATTATTTTGAA
Found at i:64938174 original size:98 final size:98
Alignment explanation
Indices: 64938003--64938199 Score: 376
Period size: 98 Copynumber: 2.0 Consensus size: 98
64937993 GTGCAATAAA
*
64938003 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
64938068 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
64938101 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
64938166 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
64938199 A
1 A
64938200 TTATTTTTTT
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 97 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:64938901 original size:27 final size:28
Alignment explanation
Indices: 64938868--64938920 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
64938858 ATATAAAGAT
*
64938868 AAAAATATTCATTTAAAA-AAATATAGG
1 AAAAATATTCATTAAAAATAAATATAGG
*
64938895 AAAAATATTCGTTAAAAATAAATATA
1 AAAAATATTCATTAAAAATAAATATA
64938921 TACACGTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.30
Consensus pattern (28 bp):
AAAAATATTCATTAAAAATAAATATAGG
Found at i:64940300 original size:10 final size:11
Alignment explanation
Indices: 64940260--64940299 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
64940250 GCCAATGTAC
*
64940260 TTTTTTATATAT
1 TTTTTTAGA-AT
64940272 TTTTTTAGAATT
1 TTTTTTAGAA-T
64940284 TTTTTTAGAAT
1 TTTTTTAGAAT
64940295 TTTTT
1 TTTTT
64940300 AAAAATATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 7 0.27
12 19 0.73
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (11 bp):
TTTTTTAGAAT
Found at i:64947635 original size:21 final size:20
Alignment explanation
Indices: 64947597--64947635 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
64947587 TGTTGGGTTG
*
64947597 ATTGATATGGAATTATGTGC
1 ATTGATATGGAATGATGTGC
*
64947617 ATTGAGTATTGAATGATGT
1 ATTGA-TATGGAATGATGT
64947636 ACCTGTGTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.31, C:0.03, G:0.26, T:0.41
Consensus pattern (20 bp):
ATTGATATGGAATGATGTGC
Found at i:64949182 original size:39 final size:39
Alignment explanation
Indices: 64949139--64949214 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
64949129 TATAGGTAAC
64949139 GAGTTTAACAGAGTTTCAAGTTCGGATCGAGGAACTGCT
1 GAGTTTAACAGAGTTTCAAGTTCGGATCGAGGAACTGCT
* * * *
64949178 GAGTTTAACTGAGTTTCGAGTTTGGATTGAGGAACTG
1 GAGTTTAACAGAGTTTCAAGTTCGGATCGAGGAACTG
64949215 TTTATCAGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.26, C:0.12, G:0.30, T:0.32
Consensus pattern (39 bp):
GAGTTTAACAGAGTTTCAAGTTCGGATCGAGGAACTGCT
Found at i:64950089 original size:132 final size:132
Alignment explanation
Indices: 64949920--64950183 Score: 501
Period size: 132 Copynumber: 2.0 Consensus size: 132
64949910 TTTCCTTAAA
*
64949920 GACAAAAGATTAATTGGTCCACTAATTCATAATGCTAGATTCTTTCATGCAAATCAGACATCAAA
1 GACAAAAGATTAATTGGCCCACTAATTCATAATGCTAGATTCTTTCATGCAAATCAGACATCAAA
* *
64949985 CAAAGGAACAAAGACCCACTCACCTTTATATATGTGTAATATATGCAGAGATTGAATATTATATT
66 CAAAGGAACAAAGACCCACTCACCGTTATATATGTGTAATATATGCAGAGATTGAATATCATATT
64950050 TT
131 TT
64950052 GACAAAAGATTAATTGGCCCACTAATTCATAATGCTAGATTCTTTCATGCAAATCAGACATCAAA
1 GACAAAAGATTAATTGGCCCACTAATTCATAATGCTAGATTCTTTCATGCAAATCAGACATCAAA
64950117 CAAAGGAACAAAGACCCACTCACCGTTATATATGTGTAATATATGCAGAGATTGAATATCATATT
66 CAAAGGAACAAAGACCCACTCACCGTTATATATGTGTAATATATGCAGAGATTGAATATCATATT
64950182 TT
131 TT
64950184 AAAAAATAAT
Statistics
Matches: 129, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 129 1.00
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.30
Consensus pattern (132 bp):
GACAAAAGATTAATTGGCCCACTAATTCATAATGCTAGATTCTTTCATGCAAATCAGACATCAAA
CAAAGGAACAAAGACCCACTCACCGTTATATATGTGTAATATATGCAGAGATTGAATATCATATT
TT
Found at i:64955838 original size:115 final size:114
Alignment explanation
Indices: 64955635--64956147 Score: 826
Period size: 115 Copynumber: 4.5 Consensus size: 114
64955625 AAACAAAAAG
*
64955635 AAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTAC--A-AAAAAAAATT
1 AAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAAAATA
* *
64955697 TTATTTTTTTTTCGTGTCAGAATCAGATAAAAAAATATG-AAAAAATTAA
66 TTA-TTTTTTTTCGTGTCAGAATCAGATAAAAAAATACGAAAAAAATAAA
*
64955746 AAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACGCAGTACAAAGAAAAAAGAAT
1 AAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAA-AA-
*
64955811 TTTTATTTTTTTTCGTGTCAGAATCAGAT-AAAAAATACGAAAAAAATAAA
64 TATTATTTTTTTTCGTGTCAGAATCAGATAAAAAAATACGAAAAAAATAAA
*
64955861 AAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAAAAAA
1 AAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAAAATA
* *
64955926 TTA-TTTTTTTCGTGTTAGAATCAGATACAAAAATACGAAAAAAAT-AA
66 TTATTTTTTTTCGTGTCAGAATCAGATAAAAAAATACGAAAAAAATAAA
64955973 AAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAAAA-A
1 AAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAAAATA
64956037 TTATTTTTCTTTCGTGTCAGAATCAGATAAAAAAATACGAAAAAAATAAA
66 TTATTTTT-TTTCGTGTCAGAATCAGATAAAAAAATACGAAAAAAATAAA
* * * *
64956087 AAAAAATTTTGGGTGCTGGCCTGTCAATGGGCAGCACCCAGCACGCAGTACAAAGAAAAAA
1 AAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAA
64956148 TTTTTTTTTT
Statistics
Matches: 378, Mismatches: 14, Indels: 17
0.92 0.03 0.04
Matches are distributed among these distances:
111 54 0.14
112 91 0.24
113 57 0.15
114 76 0.20
115 95 0.25
116 5 0.01
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.25
Consensus pattern (114 bp):
AAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAAAATA
TTATTTTTTTTCGTGTCAGAATCAGATAAAAAAATACGAAAAAAATAAA
Found at i:64955882 original size:226 final size:226
Alignment explanation
Indices: 64955635--64956158 Score: 860
Period size: 226 Copynumber: 2.3 Consensus size: 226
64955625 AAACAAAAAG
64955635 AAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAA-AAAAAATTTT
1 AAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAATTTT
* *
64955699 ATTTTTTTTTCGTGTCAGAATCAGATAAAAAAATATGAAAAAATTAAAAAAAATTTTGGGTGCTG
66 ATTTTTTTTTCGTGTCAGAATCAGATAAAAAAATACGAAAAAAATAAAAAAAATTTTGGGTGCTG
* *
64955764 GCCTGTCAATGGCCGGCACCCAGTACGCAGTACAAAGAAAAAAGAATTTTTATTTTT-TTTCGTG
131 GCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAA-AA--ATTATTTTTCTTTCGTG
64955828 TCAGAATCAGAT-AAAAAATACGAAAAAAATAAA
193 TCAGAATCAGATAAAAAAATACGAAAAAAATAAA
***
64955861 AAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAA-AAA
1 AAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAATTTT
* *
64955925 ATTATTTTTTTCGTGTTAGAATCAGATACAAAAATACGAAAAAAATAAAAAAAATTTTGGGTGCT
66 ATT-TTTTTTTCGTGTCAGAATCAGATAAAAAAATACGAAAAAAATAAAAAAAATTTTGGGTGCT
64955990 GGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAAAAATTATTTTTCTTTCGTGTC
130 GGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAAAAATTATTTTTCTTTCGTGTC
64956055 AGAATCAGATAAAAAAATACGAAAAAAATAAA
195 AGAATCAGATAAAAAAATACGAAAAAAATAAA
* * * *
64956087 AAAAAATTTTGGGTGCTGGCCTGTCAATGGGCAGCACCCAGCACGCAGTACAAAGAAAAAATTTT
1 AAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAATTTT
64956152 -TTTTTTT
66 ATTTTTTT
64956159 AATTTTTTTC
Statistics
Matches: 277, Mismatches: 16, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
224 8 0.03
225 24 0.09
226 139 0.50
227 106 0.38
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (226 bp):
AAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAATTTT
ATTTTTTTTTCGTGTCAGAATCAGATAAAAAAATACGAAAAAAATAAAAAAAATTTTGGGTGCTG
GCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAAAAATTATTTTTCTTTCGTGTCA
GAATCAGATAAAAAAATACGAAAAAAATAAA
Found at i:64956289 original size:115 final size:114
Alignment explanation
Indices: 64956143--64956845 Score: 897
Period size: 115 Copynumber: 6.2 Consensus size: 114
64956133 AGTACAAAGA
*
64956143 AAAAATTTTTTTTTTTAATTTTTTTCGTATTTTTTTATCTGATTCTGACACG-AAAAAAATAATT
1 AAAAATTTTTTTATTT-ATTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAATAA-T
*
64956207 TTTTTTTCTTTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAGCACC
64 TTTTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACC
* ** * * *
64956258 AAAAAAATTAATTATTTATTTTTCTCGTATTTTTTTATCTAATTCTGACACG-AAAAAAATAAAA
1 -AAAAATTTTTTTATTTATTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAAT-AAT
*
64956322 TTTTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAACACC
64 TTTTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACC
*
64956373 CAAAATTTTTTT-TTTATTTTTTTCGTA-TTTTTTATCTGATTCTGACACGAAAAAAAATAAAAT
1 AAAAATTTTTTTATTTATTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAAT--AA-
* *
64956436 TTTTTTTTCTTTGTACTGTGTACTGGGTGCCAGCCATTGACAGGCTAGCACCC
63 TTTTTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCA-CC
*
64956489 AAAAATTTTTTTTTTTTATTTTTTTTCGTA-TTTTTTATCTGATTCTGACACGAAAAAAAATAAA
1 AAAAA-TTTTTTTATTTA-TTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAAT---
* *
64956553 AAATATTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCC
61 -AATTTTTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCA-CC
* *** *
64956609 AAAATTTTTTTTAAAAATTTTTTTCGTATTTTTTTATCTGATTCTGAGACGAAAAAAAATAATTT
1 AAAAATTTTTTTATTTATTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAATAATTT
*
64956674 TTTTTCTTTATACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACC
66 TTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACC
* **
64956723 CAAAATTTTTTTA-AAATTTTTTTCGTATTTTTTTATCTGATTCTGACAC--AAAAAAA-AA---
1 AAAAATTTTTTTATTTATTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAATAATTT
64956781 ------TTTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACC
66 TTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACC
* *
64956824 -CAAATTTTTTT-TTTGTTTTTTT
1 AAAAATTTTTTTATTTATTTTTTT
64956846 TTTCTTTTTT
Statistics
Matches: 534, Mismatches: 41, Indels: 40
0.87 0.07 0.07
Matches are distributed among these distances:
100 17 0.03
101 42 0.08
110 2 0.00
111 7 0.01
112 21 0.04
113 57 0.11
114 24 0.04
115 185 0.35
116 20 0.04
117 7 0.01
118 15 0.03
119 80 0.15
120 53 0.10
121 4 0.01
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (114 bp):
AAAAATTTTTTTATTTATTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAATAATTT
TTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACC
Found at i:64956641 original size:350 final size:348
Alignment explanation
Indices: 64956142--64956781 Score: 998
Period size: 350 Copynumber: 1.8 Consensus size: 348
64956132 CAGTACAAAG
*
64956142 AAAAAATTTTTTTTTTTAATTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAATAATT
1 AAAAAATTTTTTTTTTTAATTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAATAAAT
* *
64956207 TTTTTTTCTTTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAGCACCAAAAAAATTAATTA
66 ATTTTTTCTTTGTACTGCATACTGGGTGCCGGCCATTGACAGGCCAGCACCAAAAAAATTAATTA
*** *
64956272 TTTATTTTTCTCGTATTTTTTTATCTAATTCTGACACG-AAAAAAATAAAATTTTTTTCTTTGTA
131 AAAATTTTTCTCGTATTTTTTTATCTAATTCTGACACGAAAAAAAAT-AAATTTTTTTCTTTATA
***
64956336 CTGTGTACTGGGTGCCGGCCATTGACAGGCCAACACCCAAAATTTTTTTTTTATTTTTTTCGTA-
195 CTGTGTACTGGGTGCCGGCCATTGACAGGCCAACACCCAAAATTTTTTTAAAATTTTTTTCGTAT
*
64956400 TTTTTTATCTGATTCTGACACGAAAAAAAATAAAATTTTTTTTTCTTTGTACTGTGTACTGGGTG
260 TTTTTTATCTGATTCTGACACAAAAAAAAATAAAATTTTTTTTTCTTTGTACTGTGTACTGGGTG
64956465 CCAGCCATTGACAGGCTAGCACCC
325 CCAGCCATTGACAGGCTAGCACCC
* *
64956489 AAAAATTTTTTTTTTTTATTTTTTTTCGTA-TTTTTTATCTGATTCTGACACGAAAAAAAATAAA
1 AAAAAATTTTTTTTTTTAATTTTTTTCGTATTTTTTTATCTGATTCTGACACG-AAAAAAAT---
* * ** *
64956553 AAATATTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTT
62 AAATATTTTTTCTTTGTACTGCATACTGGGTGCCGGCCATTGACAGGCCAGCACCAAAAAAATTA
* * * * *
64956618 TTTAAAAATTTTTTTCGTATTTTTTTATCTGATTCTGAGACGAAAAAAAATAATTTTTTTTCTTT
127 ATTAAAAATTTTTCTCGTATTTTTTTATCTAATTCTGACACGAAAAAAAATAAATTTTTTTCTTT
*
64956683 ATACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTAAAATTTTTTTCG
192 ATACTGTGTACTGGGTGCCGGCCATTGACAGGCCAACACCCAAAATTTTTTTAAAATTTTTTTCG
64956748 TATTTTTTTATCTGATTCTGACACAAAAAAAAAT
257 TATTTTTTTATCTGATTCTGACACAAAAAAAAAT
64956782 TTGTACTGTG
Statistics
Matches: 263, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
346 22 0.08
347 36 0.14
350 167 0.63
351 38 0.14
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.43
Consensus pattern (348 bp):
AAAAAATTTTTTTTTTTAATTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAATAAAT
ATTTTTTCTTTGTACTGCATACTGGGTGCCGGCCATTGACAGGCCAGCACCAAAAAAATTAATTA
AAAATTTTTCTCGTATTTTTTTATCTAATTCTGACACGAAAAAAAATAAATTTTTTTCTTTATAC
TGTGTACTGGGTGCCGGCCATTGACAGGCCAACACCCAAAATTTTTTTAAAATTTTTTTCGTATT
TTTTTATCTGATTCTGACACAAAAAAAAATAAAATTTTTTTTTCTTTGTACTGTGTACTGGGTGC
CAGCCATTGACAGGCTAGCACCC
Found at i:64965812 original size:15 final size:15
Alignment explanation
Indices: 64965792--64965820 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
64965782 TTGTCTATGT
64965792 AATATATAAAAGGAA
1 AATATATAAAAGGAA
64965807 AATATATAAAAGGA
1 AATATATAAAAGGA
64965821 TTAATATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.66, C:0.00, G:0.14, T:0.21
Consensus pattern (15 bp):
AATATATAAAAGGAA
Found at i:64969288 original size:7 final size:7
Alignment explanation
Indices: 64969278--64969304 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
64969268 TTATTTCAAA
64969278 TTTCACT
1 TTTCACT
64969285 TTTCACT
1 TTTCACT
64969292 TTTCACT
1 TTTCACT
64969299 TTTCAC
1 TTTCAC
64969305 ATATACTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.30, G:0.00, T:0.56
Consensus pattern (7 bp):
TTTCACT
Found at i:64969446 original size:6 final size:6
Alignment explanation
Indices: 64969409--64969451 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
64969399 CCAAACACAC
* *
64969409 CAGTAAA CAGTAA TCAGTAA CGGTAG CAGTAA CAGTAA CAGTA
1 CAGT-AA CAGTAA -CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
64969452 TTCAACACAC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
6 21 0.68
7 10 0.32
ACGTcount: A:0.44, C:0.16, G:0.21, T:0.19
Consensus pattern (6 bp):
CAGTAA
Found at i:64969505 original size:45 final size:45
Alignment explanation
Indices: 64969435--64969535 Score: 139
Period size: 45 Copynumber: 2.2 Consensus size: 45
64969425 GTAACGGTAG
* ** *
64969435 CAGTAACAGTAACAGTATTCAACACACAAAGTGTTGAATCTGTAA
1 CAGTAACAGTAACAGTATTCAACACAAAAAGTGCCGAATCAGTAA
* * *
64969480 TAGTAACGGTAACAGTATTCGACACAAAAAGTGCCGAATCAGTAA
1 CAGTAACAGTAACAGTATTCAACACAAAAAGTGCCGAATCAGTAA
64969525 CAGTAACAGTA
1 CAGTAACAGTA
64969536 GTCGGCACAT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.22
Consensus pattern (45 bp):
CAGTAACAGTAACAGTATTCAACACAAAAAGTGCCGAATCAGTAA
Found at i:64969559 original size:38 final size:39
Alignment explanation
Indices: 64969481--64969562 Score: 105
Period size: 39 Copynumber: 2.1 Consensus size: 39
64969471 AATCTGTAAT
* *
64969481 AGTAACGGTAACAGTATTCGACACAAAAAGTGCCGAATC
1 AGTAACAGTAACAGTAGTCGACACAAAAAGTGCCGAATC
* *
64969520 AGTAACAGTAACAGTAGTCGGCAC-ATAAGTGCCTG-ATC
1 AGTAACAGTAACAGTAGTCGACACAAAAAGTGCC-GAATC
64969558 AGTAA
1 AGTAA
64969563 GCCGGCAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
38 16 0.42
39 22 0.58
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.20
Consensus pattern (39 bp):
AGTAACAGTAACAGTAGTCGACACAAAAAGTGCCGAATC
Found at i:64976833 original size:14 final size:15
Alignment explanation
Indices: 64976808--64976836 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
64976798 TTTAAAAATT
64976808 AATTTTATAATTTTA
1 AATTTTATAATTTTA
64976823 AATTTTA-AATTTTA
1 AATTTTATAATTTTA
64976837 GGGATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTTTATAATTTTA
Found at i:64978316 original size:20 final size:20
Alignment explanation
Indices: 64978293--64978332 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
64978283 CTTTTTTGTT
64978293 GTGATTTTTAAATTTTATTA
1 GTGATTTTTAAATTTTATTA
64978313 GTGATTTTTAAATTTTATTA
1 GTGATTTTTAAATTTTATTA
64978333 ATTTTGACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (20 bp):
GTGATTTTTAAATTTTATTA
Found at i:64982299 original size:21 final size:23
Alignment explanation
Indices: 64982264--64982305 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
64982254 TGTTTCCCAA
*
64982264 TATTTATTATATATTTATATTAT
1 TATTTATTATATATTCATATTAT
64982287 TATTT-TT-TATATTCATATT
1 TATTTATTATATATTCATATT
64982306 CATATTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 2 0.11
23 5 0.28
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (23 bp):
TATTTATTATATATTCATATTAT
Found at i:64982311 original size:21 final size:22
Alignment explanation
Indices: 64982263--64982315 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
64982253 CTGTTTCCCA
*
64982263 ATATTTATTATATATTTATATT
1 ATATTTATTATATATTCATATT
64982285 ATTATTT-TT-TATATTCATATT
1 A-TATTTATTATATATTCATATT
64982306 CATA-TTATTA
1 -ATATTTATTA
64982316 GTAAGTTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
20 2 0.08
21 15 0.58
22 4 0.15
23 5 0.19
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (22 bp):
ATATTTATTATATATTCATATT
Found at i:64983781 original size:30 final size:29
Alignment explanation
Indices: 64983716--64983781 Score: 69
Period size: 30 Copynumber: 2.2 Consensus size: 29
64983706 TATGACAAGT
* *
64983716 ATTTTTTTATCCTTTTTTTTTTAACTTCA
1 ATTTTTTCATCCTTTTTTTTTTAACATCA
* **
64983745 ACTTTTTTCATCTTTTTTTTTTCTTTCATCA
1 A-TTTTTTCATCCTTTTTTTTT-TAACATCA
64983776 ATTTTT
1 ATTTTT
64983782 ATTTTAATTC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
29 1 0.03
30 23 0.77
31 6 0.20
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (29 bp):
ATTTTTTCATCCTTTTTTTTTTAACATCA
Found at i:64984189 original size:19 final size:19
Alignment explanation
Indices: 64984165--64984205 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
64984155 AATTTTAATA
*
64984165 TTGATATAAGTTAAAAATT
1 TTGATAAAAGTTAAAAATT
*
64984184 TTGATAAAAGTTAAAACTT
1 TTGATAAAAGTTAAAAATT
64984203 TTG
1 TTG
64984206 TCACGCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.02, G:0.12, T:0.41
Consensus pattern (19 bp):
TTGATAAAAGTTAAAAATT
Found at i:64985171 original size:25 final size:22
Alignment explanation
Indices: 64985142--64985190 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
64985132 TAACCATTTA
64985142 TTTATATGTAAATAAAATATTTAAT
1 TTTATAT-TAAA-AAAAT-TTTAAT
*
64985167 TTTATATTTAAAAAATTTTAAT
1 TTTATATTAAAAAAATTTTAAT
64985189 TT
1 TT
64985191 AGTTTTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 8 0.35
23 5 0.22
24 3 0.13
25 7 0.30
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (22 bp):
TTTATATTAAAAAAATTTTAAT
Found at i:64985191 original size:21 final size:24
Alignment explanation
Indices: 64985137--64985191 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
64985127 GCAATTAACC
64985137 ATTT-ATTTATATGTAAATAAAAT
1 ATTTAATTTATATGTAAATAAAAT
*
64985160 ATTTAATTTTATAT-TTAA-AAAAT
1 ATTTAA-TTTATATGTAAATAAAAT
64985183 -TTTAATTTA
1 ATTTAATTTA
64985192 GTTTTAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
21 4 0.14
22 5 0.17
23 9 0.31
24 4 0.14
25 7 0.24
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (24 bp):
ATTTAATTTATATGTAAATAAAAT
Found at i:64986273 original size:29 final size:30
Alignment explanation
Indices: 64986225--64986282 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
64986215 GAAATTCATC
*
64986225 ATTAGCCCTTCAAAGTTTTTAAAAATTTTA
1 ATTAGCCCTTCAAACTTTTTAAAAATTTTA
* **
64986255 ATTAGGCCTT-AAACTTTTTGGAAATTTT
1 ATTAGCCCTTCAAACTTTTTAAAAATTTT
64986283 TATCAAGCCC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 15 0.62
30 9 0.38
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (30 bp):
ATTAGCCCTTCAAACTTTTTAAAAATTTTA
Found at i:64986303 original size:30 final size:30
Alignment explanation
Indices: 64986261--64986318 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
64986251 TTTAATTAGG
64986261 CCTTAAACTTTTTGGAAA-TTTTTATCAAGC
1 CCTTAAACTTTTT-GAAACTTTTTATCAAGC
*
64986291 CCTTGAAA-TTTTTGAAACTTTTTTTCAA
1 CCTT-AAACTTTTTGAAACTTTTTATCAA
64986319 TGAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 4 0.16
30 18 0.72
31 3 0.12
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.47
Consensus pattern (30 bp):
CCTTAAACTTTTTGAAACTTTTTATCAAGC
Found at i:65000056 original size:22 final size:22
Alignment explanation
Indices: 65000026--65000092 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 22
65000016 TACACTATTG
*
65000026 AACAAAGAGCACTAAAGTGCTA
1 AACAGAGAGCACTAAAGTGCTA
*
65000048 TACAGAGAGCAC-AAATGTGCTA
1 AACAGAGAGCACTAAA-GTGCTA
* *
65000070 AACAGAAAGCACTAATGTGCTA
1 AACAGAGAGCACTAAAGTGCTA
65000092 A
1 A
65000093 TAATCGGAGA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
21 3 0.08
22 33 0.87
23 2 0.05
ACGTcount: A:0.46, C:0.18, G:0.19, T:0.16
Consensus pattern (22 bp):
AACAGAGAGCACTAAAGTGCTA
Found at i:65008185 original size:21 final size:22
Alignment explanation
Indices: 65008144--65008185 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
65008134 AAAATTTCTT
*
65008144 TTAAAATATTTGAATTGTTAAG
1 TTAAAATATTTGAATTATTAAG
*
65008166 TTAATATATTT-AATTATTAA
1 TTAAAATATTTGAATTATTAA
65008186 AATAAAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (22 bp):
TTAAAATATTTGAATTATTAAG
Found at i:65014229 original size:297 final size:293
Alignment explanation
Indices: 65013507--65014668 Score: 1127
Period size: 296 Copynumber: 3.9 Consensus size: 293
65013497 TTCTTTTTGA
* * * * * **
65013507 GTTTTACTAAGCTGGTGTCACCCTCAATTAGGTCACCAACTCAGTTAGGAAATTATGAGAATGTT
1 GTTTTACTAAGTTGGTGTCACCCTCAATCAGGTCACCAACTCAATTAGGAAATTATAAAAATGCC
* * * * ** * *
65013572 TTTCTGTAATTAAAATAAGTTGTACCATTTGAGGGTATTTTA-AATATTCATTTTAACAAAAACC
66 CTTC-ATAATTAAAATAAGTTATACTATTTGAGGGTATTTTAGTCTTTTCATTTTAACAAAAACA
* ** **
65013636 AATTAAAAT-TAGCATATGATAAGATTTGAATACATGCCAATTAATTTAATAAAACTTTAAATTT
130 AATTAAAATAT-GCATATGATGAGATTTGAACCCACACCAATTAA-TT-A-AAAACTTTAAATTT
* * ** * *
65013700 ACCATTTAACCAAAGCTTCGTTTTAATATATTTTATA-ATCGTGTT-TTTTAATATGCACAAGTT
191 ACCACTTAACCAAAGTTTTATTTTAATATATTTTATACAT-TTTTTATTTTAATATGC-CAAGTT
* * *
65013763 ATTATCTCCATTAGTTGTATACA-TATACTATTTGTTAAGT
254 ATTATCTCCACTAGTTGTATATACT-TACTATTTATTAAGT
* * * * * *
65013803 ATTTTACTAAGTTGGTGTCATCCTCAACCAGGTCACCAACTCGATCAGGAAATTATAAAAATGTT
1 GTTTTACTAAGTTGGTGTCACCCTCAATCAGGTCACCAACTCAATTAGGAAATTATAAAAATG-C
** *
65013868 ATTTCATAATTAAAATAAGTTATACTGTTTGAGGGTATTTTAGTC-TTTCATTTTAACAAAAACA
65 CCTTCATAATTAAAATAAGTTATACTATTTGAGGGTATTTTAGTCTTTTCATTTTAACAAAAACA
*
65013932 AATTAAAATATGCATATGATGAGATTTGAACCCACACCAATTGGATCTAAAAACCTTTAAATTTA
130 AATTAAAATATGCATATGATGAGATTTGAACCCACACCAATT-AAT-TAAAAA-CTTTAAATTTA
* * *
65013997 TCACTCAACCAAAATTTTATTTTAATATATTTTATACATTTTTTATTTTAATATGCGCACA-TTA
192 CCACTTAACCAAAGTTTTATTTTAATATATTTTATACATTTTTTATTTTAATATGC-CA-AGTTA
65014061 TTATCTCCACTAGTTGTATATACTTACTATTTATTAAGT
255 TTATCTCCACTAGTTGTATATACTTACTATTTATTAAGT
* * * * *
65014100 GTTTTACTATGTTGGTGTCACCCTCGATCGGGTCACCAAATCAATTAGGAAATTACAAAAATGCC
1 GTTTTACTAAGTTGGTGTCACCCTCAATCAGGTCACCAACTCAATTAGGAAATTATAAAAATGCC
*
65014165 CTTCATAATTAAAATAATTTATACTATTTGA-GGTCATTTTAGTCTTTTCATTTTAACAAAAACA
66 CTTCATAATTAAAATAAGTTATACTATTTGAGGGT-ATTTTAGTCTTTTCATTTTAACAAAAACA
* * * *
65014229 AATTAAAATATGCATATGATGAGATTTGAACCCACCCCAATTAAATTAGTAAAGTATAAATTTAC
130 AATTAAAATATGCATATGATGAGATTTGAACCCACACCAATT-AATTA-AAAACTTTAAATTTAC
* * *
65014294 CACTTAACC-AAGTCTTTATTTTAATATATTTTATAC-CTTTTTATTTTAATATACAAAAGTTAT
193 CACTTAACCAAAGT-TTTATTTTAATATATTTTATACATTTTTTATTTTAATATGC-CAAGTTAT
* * *
65014357 TATCTCCAGTAGTTGTATATCTATCCTTACCA-TTATTAATT
256 TATCTCCACTAGTTGTATA--TA--CTTACTATTTATTAAGT
* ** ** * *
65014398 GTTTTACTAAGTTGGTGTCA-CCTCCATTTGGGTCACCAACTCGGTTAGAAAATTTTAAAAATGC
1 GTTTTACTAAGTTGGTGTCACCCT-CAATCAGGTCACCAACTCAATTAGGAAATTATAAAAATGC
* * *
65014462 CCTTTCGTAATTAAAATAAGTTATACTATTTGACAATAGTTATTTTAGTCTTTTCATTTTAACAA
65 CC-TTCATAATTAAAATAAGTTATACTATTTG---A-GGGTATTTTAGTCTTTTCATTTTAACAA
* * *
65014527 AAACAAATTAAAATATGCATA-CA-GTAGGATTTGAACCCACACTAACTGAGA-TAGCAAAA-TC
125 AAACAAATTAAAATATGCATATGATG-A-GATTTGAACCCACACCAA-TTA-ATTA--AAAACT-
* * * * * * * * * *
65014588 TTAATTTTACCA-TTCAACTAAAGCTTCATTTTATTCTAATTTATA-AATTTTCATTTTAAGATG
183 TTAAATTTACCACTT-AACCAAAGTTTTATTTTAATATATTTTATACATTTTTTATTTTAATATG
65014651 CACAAGTTATTATCTCCA
247 C-CAAGTTATTATCTCCA
65014669 TTACTTTTAT
Statistics
Matches: 730, Mismatches: 101, Indels: 62
0.82 0.11 0.07
Matches are distributed among these distances:
294 1 0.00
295 49 0.07
296 261 0.36
297 183 0.25
298 62 0.08
299 33 0.05
301 1 0.00
302 3 0.00
303 67 0.09
304 67 0.09
305 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (293 bp):
GTTTTACTAAGTTGGTGTCACCCTCAATCAGGTCACCAACTCAATTAGGAAATTATAAAAATGCC
CTTCATAATTAAAATAAGTTATACTATTTGAGGGTATTTTAGTCTTTTCATTTTAACAAAAACAA
ATTAAAATATGCATATGATGAGATTTGAACCCACACCAATTAATTAAAAACTTTAAATTTACCAC
TTAACCAAAGTTTTATTTTAATATATTTTATACATTTTTTATTTTAATATGCCAAGTTATTATCT
CCACTAGTTGTATATACTTACTATTTATTAAGT
Found at i:65014709 original size:592 final size:592
Alignment explanation
Indices: 65013507--65014668 Score: 1315
Period size: 593 Copynumber: 2.0 Consensus size: 592
65013497 TTCTTTTTGA
* * * * * ** * **
65013507 GTTTTACTAAGCTGGTGTCACCCTCAATTAGGTCACCAACTCAGTTAGGAAATTATGAGAATGTT
1 GTTTTACTATGTTGGTGTCACCCTCAATCAGGTCACCAAATCAATTAGGAAATTACAAAAATGCC
* * * *
65013572 TTTCTGTAATTAAAATAAGTTGTACCATTTGAGGGTATTTTAAATATTCATTTTAACAAAAACCA
66 CTTCTATAATTAAAATAAGTTATACCATTTGAGGGTATTTTAAATATTCATTTTAACAAAAACAA
* ** * *
65013637 ATTAAAATTAGCATATGATAAGATTTGAATACATGCCAATTAATTTAATAAAACTTTAAATTTAC
131 ATTAAAATTAGCATATGATAAGATTTGAACACACCCCAATTAAATTAATAAAACTATAAATTTAC
* * * * *
65013702 CATTTAACCAAAGCTTCGTTTTAATATATTTTATAATCGTGTTTTTTAATATGCACAAGTTATTA
196 CACTTAACCAAAGCTTCATTTTAATATATTTTATAACCGTGTTTTTTAATATACAAAAGTTATTA
* * *
65013767 TCTCCATTAGTTGTATACATATACTATTTGTTAAGTATTTTACTAAGTTGGTGTCATCCTCAACC
261 TCTCCAGTAGTTGTATACATATACTAATTATTAAGTATTTTACTAAGTTGGTGTCATCCTCAACC
* ** *
65013832 AGGTCACCAACTCGATCAGGAAATTATAAAAATGTTATTTCATAATTAAAATAAGTTATACTGTT
326 AGGTCACCAACTCGATCAGAAAATTATAAAAATGCCATTTCATAATTAAAATAAGTTATACTATT
* *
65013897 TGAGGGTATTTTAGTCTTTCATTTTAACAAAAACAAATTAAAATATGCATATGATGAGATTTGAA
391 TGAAGGTATTTTAGTCTTTCATTTTAACAAAAACAAATTAAAATATGCATAAGATGAGATTTGAA
* ** * * * *
65013962 CCCACACCAATTGGATCTAAAAACCTTTAAATTTATCACTCAACCAAAATTTTATTTTAATATAT
456 CCCACACCAACTGGATAGAAAAACCTTTAAATTTACCACTCAACCAAAACTTCATTTTAATATAA
* * * * *
65014027 TTTATACATTTTTTATTTTAATATGCGCACATTATTATCTCCACTAGTTGTATATACTTACTATT
521 TTTATACAATTTTCATTTTAAGATGCACACATTATTATCTCCACTAGCTGTATATAC-TACTATT
*
65014092 TATTAAGT
585 TAATAAGT
* *
65014100 GTTTTACTATGTTGGTGTCACCCTCGATCGGGTCACCAAATCAATTAGGAAATTACAAAAATGCC
1 GTTTTACTATGTTGGTGTCACCCTCAATCAGGTCACCAAATCAATTAGGAAATTACAAAAATGCC
* * ** *
65014165 CTTC-ATAATTAAAATAATTTATACTATTTGA-GGTCATTTTAGTCTTTTCATTTTAACAAAAAC
66 CTTCTATAATTAAAATAAGTTATACCATTTGAGGGT-ATTTTA-AATATTCATTTTAACAAAAAC
* * * *
65014228 AAATTAAAA-TATGCATATGATGAGATTTGAACCCACCCCAATTAAATTAGT-AAAGTATAAATT
129 AAATTAAAATTA-GCATATGATAAGATTTGAACACACCCCAATTAAATTAATAAAACTATAAATT
* * *
65014291 TACCACTTAACC-AAGTCTTTATTTTAATATATTTTAT-ACCTTTTTATTTTAATATACAAAAGT
193 TACCACTTAACCAAAG-CTTCATTTTAATATATTTTATAACCGTGTT-TTTTAATATACAAAAGT
* * *
65014354 TATTATCTCCAGTAGTTGTATATC-TATCCTTACCATTATTAATTGTTTTACTAAGTTGGTGTCA
256 TATTATCTCCAGTAGTTGTATA-CATATAC-TA--ATTATTAAGTATTTTACTAAGTTGGTGTCA
**** * * * * *
65014418 -CCTCCATTTGGGTCACCAACTCGGTTAGAAAATTTTAAAAATGCCCTTTCGTAATTAAAATAAG
317 TCCT-CAACCAGGTCACCAACTCGATCAGAAAATTATAAAAATGCCATTTCATAATTAAAATAAG
*
65014482 TTATACTATTTGACAATAGTTATTTTAGTCTTTTCATTTTAACAAAAACAAATTAAAATATGCAT
381 TTATACTATTTG---A-AGGTATTTTAGTC-TTTCATTTTAACAAAAACAAATTAAAATATGCAT
* * * * * *
65014547 ACAG-T-AGGATTTGAACCCACACTAACTGAGATAGCAAAATC-TTAATTTTACCATTCAACTAA
441 A-AGATGA-GATTTGAACCCACACCAACTG-GATAGAAAAACCTTTAAATTTACCACTCAACCAA
* * *
65014609 AGCTTCATTTTATTCTAATTTATA-AATTTTCATTTTAAGATGCACA-AGTTATTATCTCCA
503 AACTTCATTTTAATATAATTTATACAATTTTCATTTTAAGATGCACACA-TTATTATCTCCA
65014669 TTACTTTTAT
Statistics
Matches: 470, Mismatches: 80, Indels: 32
0.81 0.14 0.05
Matches are distributed among these distances:
591 11 0.02
592 111 0.24
593 117 0.25
594 3 0.01
595 85 0.18
598 2 0.00
599 42 0.09
600 90 0.19
601 9 0.02
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (592 bp):
GTTTTACTATGTTGGTGTCACCCTCAATCAGGTCACCAAATCAATTAGGAAATTACAAAAATGCC
CTTCTATAATTAAAATAAGTTATACCATTTGAGGGTATTTTAAATATTCATTTTAACAAAAACAA
ATTAAAATTAGCATATGATAAGATTTGAACACACCCCAATTAAATTAATAAAACTATAAATTTAC
CACTTAACCAAAGCTTCATTTTAATATATTTTATAACCGTGTTTTTTAATATACAAAAGTTATTA
TCTCCAGTAGTTGTATACATATACTAATTATTAAGTATTTTACTAAGTTGGTGTCATCCTCAACC
AGGTCACCAACTCGATCAGAAAATTATAAAAATGCCATTTCATAATTAAAATAAGTTATACTATT
TGAAGGTATTTTAGTCTTTCATTTTAACAAAAACAAATTAAAATATGCATAAGATGAGATTTGAA
CCCACACCAACTGGATAGAAAAACCTTTAAATTTACCACTCAACCAAAACTTCATTTTAATATAA
TTTATACAATTTTCATTTTAAGATGCACACATTATTATCTCCACTAGCTGTATATACTACTATTT
AATAAGT
Found at i:65032578 original size:7 final size:7
Alignment explanation
Indices: 65032568--65032597 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
65032558 AAAAACAGAT
65032568 GATCAAA
1 GATCAAA
65032575 GATCAAA
1 GATCAAA
*
65032582 TATCAAA
1 GATCAAA
65032589 GATCAAA
1 GATCAAA
65032596 GA
1 GA
65032598 AGCTAAGCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.13, G:0.13, T:0.17
Consensus pattern (7 bp):
GATCAAA
Found at i:65032882 original size:12 final size:13
Alignment explanation
Indices: 65032865--65032897 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
65032855 CAAAAATGGG
65032865 AAATAAAT-AAAT
1 AAATAAATAAAAT
65032877 AAATAAATAAAAT
1 AAATAAATAAAAT
65032890 AGAATAAA
1 A-AATAAA
65032898 GGCTGGGGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.42
13 5 0.26
14 6 0.32
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:65044101 original size:14 final size:12
Alignment explanation
Indices: 65044066--65044096 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
65044056 GTGTGTGCGG
*
65044066 CCGTGTGCTAGA
1 CCGTGTGATAGA
65044078 CCGTGTGATAGA
1 CCGTGTGATAGA
65044090 CCGTGTG
1 CCGTGTG
65044097 TGATATTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.23, G:0.35, T:0.26
Consensus pattern (12 bp):
CCGTGTGATAGA
Found at i:65044151 original size:29 final size:29
Alignment explanation
Indices: 65044109--65044177 Score: 129
Period size: 29 Copynumber: 2.4 Consensus size: 29
65044099 ATATTAAGAT
*
65044109 GACCACACGGGCGTTTGCTTGGCCGTGTG
1 GACCACACGGGCGTGTGCTTGGCCGTGTG
65044138 GACCACACGGGCGTGTGCTTGGCCGTGTG
1 GACCACACGGGCGTGTGCTTGGCCGTGTG
65044167 GACCACACGGG
1 GACCACACGGG
65044178 TCAGCCACCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.13, C:0.29, G:0.39, T:0.19
Consensus pattern (29 bp):
GACCACACGGGCGTGTGCTTGGCCGTGTG
Found at i:65048947 original size:17 final size:16
Alignment explanation
Indices: 65048919--65048970 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
65048909 CTTCATATAT
*
65048919 TTTCACTTCTTTTTCC
1 TTTCATTTCTTTTTCC
*
65048935 TTTCATATTCTTTTTCA
1 TTTCAT-TTCTTTTTCC
*
65048952 TTTCATTTCTCTTTCC
1 TTTCATTTCTTTTTCC
65048968 TTT
1 TTT
65048971 GTTTTCCCCC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
16 16 0.52
17 15 0.48
ACGTcount: A:0.10, C:0.25, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTCATTTCTTTTTCC
Found at i:65052266 original size:29 final size:30
Alignment explanation
Indices: 65052227--65052284 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
65052217 AACCTTTCCC
*
65052227 CTTAGCTTTTATGGCTAAACTAGAACCCTT
1 CTTAGCTTTTATGGCTAAACTAAAACCCTT
*
65052257 CTTAG-TTTTATGGCTTAACTAAAACCCT
1 CTTAGCTTTTATGGCTAAACTAAAACCCT
65052285 CCTAATTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.28, C:0.22, G:0.12, T:0.38
Consensus pattern (30 bp):
CTTAGCTTTTATGGCTAAACTAAAACCCTT
Found at i:65057112 original size:2 final size:2
Alignment explanation
Indices: 65057105--65057130 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
65057095 TATTGAGGTG
65057105 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
65057131 GCTTCTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:65068674 original size:155 final size:155
Alignment explanation
Indices: 65068392--65068704 Score: 484
Period size: 155 Copynumber: 2.0 Consensus size: 155
65068382 AGAAACAGAC
*
65068392 GCATGATGTCACAACGAGCAAGAGGCAACATCGTGACGAGGGTCATCGGGACAAGCAAAGATCTC
1 GCATGATGTCACAACGAGCAAGAGGCAACATCGTGACAAGGGTCATCGGGACAAGCAAAGATCTC
*
65068457 TTGAGGTAGGAGCAGGGGCAACGTCACGAAGAGGAGAGTCATGACGTCACAACGATATCTCACCT
66 TTGAGGTAGGAGCAGGGGCAACGTCACGAAGAGGAGAGTCATGACGTCACAACGATACCTCACCT
*
65068522 AATGTAGCTGCGTTTTATACTCCAA
131 AATGTAGCTGCGTTTTAGACTCCAA
* * *
65068547 GCATGATGTCA-AGACGAGCAAGCGGCAACGTCGTGACAAGGGTCATCGGGACGAGCAAAGATCT
1 GCATGATGTCACA-ACGAGCAAGAGGCAACATCGTGACAAGGGTCATCGGGACAAGCAAAGATCT
* * * * * * *
65068611 CTTGAGGTAGGAGTAGGGGCGATGTCACGAAGATGAGAGTCATGATGTCGCGACGATACCTCACC
65 CTTGAGGTAGGAGCAGGGGCAACGTCACGAAGAGGAGAGTCATGACGTCACAACGATACCTCACC
*
65068676 TAATGTAGTTGCGTTTTAGACTCCAA
130 TAATGTAGCTGCGTTTTAGACTCCAA
65068702 GCA
1 GCA
65068705 GGACTTCTTC
Statistics
Matches: 143, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
154 1 0.01
155 142 0.99
ACGTcount: A:0.30, C:0.21, G:0.29, T:0.19
Consensus pattern (155 bp):
GCATGATGTCACAACGAGCAAGAGGCAACATCGTGACAAGGGTCATCGGGACAAGCAAAGATCTC
TTGAGGTAGGAGCAGGGGCAACGTCACGAAGAGGAGAGTCATGACGTCACAACGATACCTCACCT
AATGTAGCTGCGTTTTAGACTCCAA
Found at i:65072938 original size:11 final size:11
Alignment explanation
Indices: 65072922--65072958 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
65072912 GATGTCCATC
65072922 CAGAGAATTTG
1 CAGAGAATTTG
*
65072933 CAGAGAATTTAC
1 CAGAGAATTT-G
65072945 CAGAGAATTTG
1 CAGAGAATTTG
65072956 CAG
1 CAG
65072959 CAAGCGAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (11 bp):
CAGAGAATTTG
Found at i:65076378 original size:27 final size:24
Alignment explanation
Indices: 65076327--65076374 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
65076317 AATGTATGTA
*
65076327 TTTTTGAAATATTAATGGTATATT
1 TTTTTGAAAAATTAATGGTATATT
65076351 TTTTTGAGAAAATTAATGGTATAT
1 TTTTTGA-AAAATTAATGGTATAT
65076375 ATTTAATGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (24 bp):
TTTTTGAAAAATTAATGGTATATT
Found at i:65078212 original size:153 final size:153
Alignment explanation
Indices: 65077827--65078195 Score: 582
Period size: 153 Copynumber: 2.4 Consensus size: 153
65077817 ATATTCCACC
** * * *
65077827 TGATATTTCTGGTCTATCCTCTTTG-GAAATACTTGATCTTAGTGGTAACAAATTCGTCAGCATA
1 TGATATTTCTGGTCTATCCTCTTTGAGTTAT-CTTAATCTTAGTGGTAACAATTTCATCAGCATA
* * *
65077891 CCTGCATCTCTTACTCGACTCTCGAAGCTTGCATATCTTATATTGTCAAATTGCAACTTGTGCAC
65 CCTGCATCTCTTACTCGACTCTCAAAGCTTGAATATCTTATATTGTCAAATTGCAACATGTGCAC
*
65077956 TTTTGGTGAAGCAGATACTCATAG
130 TCTTGGTGAAGCAGATACTCATAG
65077980 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
1 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
*
65078045 CTGCATCTCTTACTCGACTCTCAAAGCTT-AAGTCTCTTGA-ATTGTCAAATTGCAACATGTGCA
66 CTGCATCTCTTACTCGACTCTCAAAGCTTGAA-TATCTT-ATATTGTCAAATTGCAACATGTGCA
65078108 CTCTTGGTGAAGCAGATACTCATAG
129 CTCTTGGTGAAGCAGATACTCATAG
* *
65078133 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTTATCTTAGTGGTAACAATTTCATTAGCAT
1 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCAT
65078196 TCCTTTGGCT
Statistics
Matches: 201, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
152 1 0.00
153 196 0.98
154 4 0.02
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.38
Consensus pattern (153 bp):
TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
CTGCATCTCTTACTCGACTCTCAAAGCTTGAATATCTTATATTGTCAAATTGCAACATGTGCACT
CTTGGTGAAGCAGATACTCATAG
Found at i:65082182 original size:41 final size:41
Alignment explanation
Indices: 65082125--65082323 Score: 287
Period size: 41 Copynumber: 4.9 Consensus size: 41
65082115 GACTTTTCGG
65082125 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
65082166 GGGCTTTAGCGGCGTTTTTATGTAAGCG-CGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
* * * *
65082206 GGGATTTAGCAGCGTTTTTATTTAAGCGCCGTTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
* *
65082247 GGGATTTAGTGGCGTTTTTA-GTAAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGT-AAGCGCCGCTAATGTTCT
* *
65082288 GGGCTTTAGCGGCGTTTTTGT-TGATGCGCCGCTAAT
1 GGGCTTTAGCGGCGTTTTTATGT-AAGCGCCGCTAAT
65082324 TCGCAGGCCT
Statistics
Matches: 142, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
40 38 0.27
41 104 0.73
ACGTcount: A:0.16, C:0.17, G:0.29, T:0.38
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
Found at i:65082264 original size:81 final size:82
Alignment explanation
Indices: 65082129--65082323 Score: 279
Period size: 81 Copynumber: 2.4 Consensus size: 82
65082119 TTTCGGGGGC
*
65082129 TTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGT-AAGC
1 TTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCTGGGATTTAGCGGCGTTTTTA-GTAAAGC
65082193 G-CGCTAATGTTCTGGGA
65 GCCGCTAATGTTCTGGGA
* * * *
65082210 TTTAGCAGCGTTTTTATTTAAGCGCCGTTAATGTTCTGGGATTTAGTGGCGTTTTTAGTAAAGCG
1 TTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCTGGGATTTAGCGGCGTTTTTAGTAAAGCG
*
65082275 CCGCTAATGTTCTGGGC
66 CCGCTAATGTTCTGGGA
* *
65082292 TTTAGCGGCGTTTTTGT-TGATGCGCCGCTAAT
1 TTTAGCGGCGTTTTTATGT-AAGCGCCGCTAAT
65082324 TCGCAGGCCT
Statistics
Matches: 101, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
80 2 0.02
81 58 0.57
82 41 0.41
ACGTcount: A:0.16, C:0.17, G:0.28, T:0.38
Consensus pattern (82 bp):
TTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCTGGGATTTAGCGGCGTTTTTAGTAAAGCG
CCGCTAATGTTCTGGGA
Found at i:65082395 original size:122 final size:122
Alignment explanation
Indices: 65082129--65082400 Score: 284
Period size: 122 Copynumber: 2.2 Consensus size: 122
65082119 TTTCGGGGGC
* * * *
65082129 TTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGTAAGCG
1 TTTAGTGGCATTTTTAGGAAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGTAAGCG
* * * ** * * * *
65082194 CGCTAATGTTCTGGGATTTAGCAGCGTTTTTATTTAAGCGCCGTTAATGTTCTGGGA
66 CGCTAATGTGCAGGCATTTAGCAGCGTTTTTATAAAAACGCCGCTAATGCTCTGCGA
* * * *
65082251 TTTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTGT-TGATGC
1 TTTAGTGGCATTTTTAGGAAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGT-AAGC
* * *
65082315 GCCGCTAAT-TCGCAGGCCTTTAGCGGCGCTTTTT-TAAAAAACGCCGCTAATGCTCT-CTA
65 G-CGCTAATGT-GCAGGCATTTAGCAGCG-TTTTTAT-AAAAACGCCGCTAATGCTCTGCGA
65082374 TTTAGTGGCATTTTT-GGAAAGCGCCGC
1 TTTAGTGGCATTTTTAGGAAAGCGCCGC
65082401 AAAAAAATTA
Statistics
Matches: 125, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
121 1 0.01
122 69 0.55
123 35 0.28
124 20 0.16
ACGTcount: A:0.18, C:0.19, G:0.27, T:0.36
Consensus pattern (122 bp):
TTTAGTGGCATTTTTAGGAAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGTAAGCG
CGCTAATGTGCAGGCATTTAGCAGCGTTTTTATAAAAACGCCGCTAATGCTCTGCGA
Found at i:65082787 original size:23 final size:23
Alignment explanation
Indices: 65082761--65082841 Score: 71
Period size: 23 Copynumber: 3.5 Consensus size: 23
65082751 ATAGTATGTA
65082761 GTTTAAGGGTTTTATAGTTTAAG
1 GTTTAAGGGTTTTATAGTTTAAG
*
65082784 GTTTAA-TGTTTACTATAGTATGT-A-
1 GTTTAAGGGTTT--TATAGT-T-TAAG
* *
65082808 GTTTAAGGGTTTCATAGTTTATG
1 GTTTAAGGGTTTTATAGTTTAAG
65082831 GTTT-AGGGTTT
1 GTTTAAGGGTTT
65082842 GTTATATTGG
Statistics
Matches: 47, Mismatches: 4, Indels: 15
0.71 0.06 0.23
Matches are distributed among these distances:
21 1 0.02
22 12 0.26
23 15 0.32
24 12 0.26
25 6 0.13
26 1 0.02
ACGTcount: A:0.23, C:0.02, G:0.25, T:0.49
Consensus pattern (23 bp):
GTTTAAGGGTTTTATAGTTTAAG
Found at i:65082877 original size:22 final size:21
Alignment explanation
Indices: 65082852--65082892 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
65082842 GTTATATTGG
65082852 GTTTGTGA-TTTAGTGTTTTAAA
1 GTTTG-GAGTTTAGT-TTTTAAA
65082874 GTTTGGAGTTTAGTTTTTA
1 GTTTGGAGTTTAGTTTTTA
65082893 TAGTCAGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.20, C:0.00, G:0.24, T:0.56
Consensus pattern (21 bp):
GTTTGGAGTTTAGTTTTTAAA
Found at i:65085429 original size:47 final size:47
Alignment explanation
Indices: 65085360--65085479 Score: 231
Period size: 47 Copynumber: 2.6 Consensus size: 47
65085350 TTAATGTAAT
*
65085360 TATTTTGCTAATGTTTAAGGAAATTGTTGGTTCTATTTATAAAACTG
1 TATTTTGCTGATGTTTAAGGAAATTGTTGGTTCTATTTATAAAACTG
65085407 TATTTTGCTGATGTTTAAGGAAATTGTTGGTTCTATTTATAAAACTG
1 TATTTTGCTGATGTTTAAGGAAATTGTTGGTTCTATTTATAAAACTG
65085454 TATTTTGCTGATGTTTAAGGAAATTG
1 TATTTTGCTGATGTTTAAGGAAATTG
65085480 CTGATGCTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.28, C:0.06, G:0.19, T:0.47
Consensus pattern (47 bp):
TATTTTGCTGATGTTTAAGGAAATTGTTGGTTCTATTTATAAAACTG
Found at i:65085445 original size:22 final size:22
Alignment explanation
Indices: 65085373--65085445 Score: 53
Period size: 22 Copynumber: 3.2 Consensus size: 22
65085363 TTTGCTAATG
65085373 TTTAAGGAAATTGTTGGTTCTA
1 TTTAAGGAAATTGTTGGTTCTA
* *
65085395 TTTATA--AAACTGTAT-TTTGCTGA
1 TTTA-AGGAAATTGT-TGGTT-CT-A
65085418 TGTTTAAGGAAATTGTTGGTTCTA
1 --TTTAAGGAAATTGTTGGTTCTA
65085442 TTTA
1 TTTA
65085446 TAAAACTGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 18
0.63 0.07 0.30
Matches are distributed among these distances:
21 8 0.21
22 11 0.29
23 2 0.05
24 2 0.05
25 7 0.18
26 8 0.21
ACGTcount: A:0.27, C:0.05, G:0.19, T:0.48
Consensus pattern (22 bp):
TTTAAGGAAATTGTTGGTTCTA
Found at i:65085606 original size:12 final size:12
Alignment explanation
Indices: 65085589--65085625 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
65085579 AACTAGAGGC
65085589 ATTCGTATGTCT
1 ATTCGTATGTCT
65085601 ATTCGTATGTCT
1 ATTCGTATGTCT
65085613 ATTCGTATGTCT
1 ATTCGTATGTCT
65085625 A
1 A
65085626 AGTATATCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.49
Consensus pattern (12 bp):
ATTCGTATGTCT
Found at i:65086832 original size:29 final size:29
Alignment explanation
Indices: 65086790--65086847 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
65086780 TAAATCTTCT
65086790 TCCATTTGTCAACTATTTCATTTCCAAAA
1 TCCATTTGTCAACTATTTCATTTCCAAAA
65086819 TCCATTTGTCAACTATTTCATTTCCAAAA
1 TCCATTTGTCAACTATTTCATTTCCAAAA
65086848 ATATATTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (29 bp):
TCCATTTGTCAACTATTTCATTTCCAAAA
Found at i:65087008 original size:9 final size:9
Alignment explanation
Indices: 65086977--65087033 Score: 57
Period size: 9 Copynumber: 6.7 Consensus size: 9
65086967 TTAAAGTTCA
65086977 AATTT-CAT
1 AATTTACAT
* *
65086985 AACTTACGT
1 AATTTACAT
*
65086994 ATTTTACAT
1 AATTTACAT
65087003 AATTTACAT
1 AATTTACAT
65087012 AA-TT-CAT
1 AATTTACAT
*
65087019 AATTTACAA
1 AATTTACAT
65087028 AATTTA
1 AATTTA
65087034 AATATATAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
7 5 0.13
8 8 0.21
9 26 0.67
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (9 bp):
AATTTACAT
Found at i:65087021 original size:16 final size:16
Alignment explanation
Indices: 65087000--65087031 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
65086990 ACGTATTTTA
*
65087000 CATAATTTACATAATT
1 CATAATTTACAAAATT
65087016 CATAATTTACAAAATT
1 CATAATTTACAAAATT
65087032 TAAATATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (16 bp):
CATAATTTACAAAATT
Found at i:65087158 original size:12 final size:12
Alignment explanation
Indices: 65087126--65087195 Score: 72
Period size: 12 Copynumber: 6.0 Consensus size: 12
65087116 CATAATATCC
*
65087126 TAACTTACATAG
1 TAACTTACATAA
* *
65087138 TATCGTACATAA
1 TAACTTACATAA
65087150 TAACTTACA-AA
1 TAACTTACATAA
65087161 -AACTTACATAA
1 TAACTTACATAA
*
65087172 TAACCTACATAA
1 TAACTTACATAA
* *
65087184 TACCTTATATAA
1 TAACTTACATAA
65087196 CAATACATAA
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
10 8 0.17
11 4 0.09
12 35 0.74
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.31
Consensus pattern (12 bp):
TAACTTACATAA
Found at i:65087263 original size:9 final size:9
Alignment explanation
Indices: 65087249--65087712 Score: 459
Period size: 9 Copynumber: 51.0 Consensus size: 9
65087239 CACAAAAACA
65087249 ATAACTTAC
1 ATAACTTAC
65087258 ATAACTTAC
1 ATAACTTAC
*
65087267 ATAAACTTGC
1 AT-AACTTAC
* *
65087277 ATAAATTAA
1 ATAACTTAC
*
65087286 ATAACTTGC
1 ATAACTTAC
* *
65087295 ATAAATTAA
1 ATAACTTAC
65087304 ATAACTTAC
1 ATAACTTAC
65087313 ATAACTTAC
1 ATAACTTAC
*
65087322 ATAACCTAC
1 ATAACTTAC
65087331 ATAACTTAC
1 ATAACTTAC
*
65087340 ATAAATTA-
1 ATAACTTAC
65087348 AGTAACTTTAC
1 A-TAAC-TTAC
**
65087359 GGAACTTAC
1 ATAACTTAC
65087368 ATAACTTAC
1 ATAACTTAC
*
65087377 ATAACCTAC
1 ATAACTTAC
65087386 ATAACTTAC
1 ATAACTTAC
* *
65087395 GTAAATTA-
1 ATAACTTAC
65087403 AGTAACTTAC
1 A-TAACTTAC
65087413 ATAACTTAC
1 ATAACTTAC
*
65087422 ATAACCTAC
1 ATAACTTAC
* * *
65087431 ATAAGTAAA
1 ATAACTTAC
65087440 ATAACTTAC
1 ATAACTTAC
65087449 ATAACTTAC
1 ATAACTTAC
*
65087458 ATAACCTAC
1 ATAACTTAC
65087467 ATAACTTAC
1 ATAACTTAC
65087476 ATAACTTAC
1 ATAACTTAC
*
65087485 ATAAACTTGC
1 AT-AACTTAC
* *
65087495 ATAAATTAA
1 ATAACTTAC
65087504 ATAACTTAC
1 ATAACTTAC
65087513 ATAACTTAC
1 ATAACTTAC
*
65087522 ATAACGTAC
1 ATAACTTAC
* *
65087531 ATAAATTAA
1 ATAACTTAC
65087540 ATAACTTAC
1 ATAACTTAC
65087549 ATAACTTAC
1 ATAACTTAC
*
65087558 ATAAATTA-
1 ATAACTTAC
65087566 AGTAACTTAC
1 A-TAACTTAC
65087576 ATAACTTAC
1 ATAACTTAC
*
65087585 ATAAACTTGC
1 AT-AACTTAC
* *
65087595 ATAAATTAA
1 ATAACTTAC
65087604 ATAACTTAC
1 ATAACTTAC
65087613 ATAACTTAC
1 ATAACTTAC
* *
65087622 ACAACCTAC
1 ATAACTTAC
* *
65087631 ATAAATTGC
1 ATAACTTAC
***
65087640 AATGGGTTAC
1 -ATAACTTAC
65087650 ATAACTTAC
1 ATAACTTAC
* *
65087659 ATAACCTAT
1 ATAACTTAC
* *
65087668 ATAAATTAA
1 ATAACTTAC
65087677 ATAACTTAC
1 ATAACTTAC
65087686 ATAACTTAC
1 ATAACTTAC
*
65087695 ATAAATTA-
1 ATAACTTAC
65087703 AGTAACTTAC
1 A-TAACTTAC
65087713 CCGTGCAAAT
Statistics
Matches: 364, Mismatches: 78, Indels: 25
0.78 0.17 0.05
Matches are distributed among these distances:
8 3 0.01
9 324 0.89
10 37 0.10
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (9 bp):
ATAACTTAC
Found at i:65087354 original size:100 final size:99
Alignment explanation
Indices: 65087249--65087712 Score: 599
Period size: 100 Copynumber: 4.6 Consensus size: 99
65087239 CACAAAAACA
* * *
65087249 ATAACTTACATAACTTACATAAACTTGCATAAATTAAATAACTTGCATAAATTAAATAACTTACA
1 ATAACTTACATAACTTACAT-AACTTACATAACTTACATAACTTGCATAAATTAAATAACTTACA
* * *
65087314 TAACTTACATAACCTACATAACTTACATAAATTA-
65 TAACTTACATAACCTACATAAATTAAATAACTTAC
** * * * *
65087348 AGTAACTTTACGGAACTTACATAACTTACATAACCTACATAACTTACGTAAATTAAGTAACTTAC
1 A-TAAC-TTACATAACTTACATAACTTACATAACTTACATAACTTGCATAAATTAAATAACTTAC
* *
65087413 ATAACTTACATAACCTACATAAGTAAAATAACTTAC
64 ATAACTTACATAACCTACATAAATTAAATAACTTAC
*
65087449 ATAACTTACATAACCTACATAACTTACATAACTTACATAAACTTGCATAAATTAAATAACTTACA
1 ATAACTTACATAACTTACATAACTTACATAACTTACAT-AACTTGCATAAATTAAATAACTTACA
*
65087514 TAACTTACATAACGTACATAAATTAAATAACTTAC
65 TAACTTACATAACCTACATAAATTAAATAACTTAC
*
65087549 ATAACTTACATAAATTA-AGTAACTTACATAACTTACATAAACTTGCATAAATTAAATAACTTAC
1 ATAACTTACATAACTTACA-TAACTTACATAACTTACAT-AACTTGCATAAATTAAATAACTTAC
* * ***
65087613 ATAACTTACACAACCTACATAAATTGCAATGGGTTAC
64 ATAACTTACATAACCTACATAAATT-AAATAACTTAC
* * * * * *
65087650 ATAACTTACATAACCTATATAAATTAAATAACTTACATAACTTACATAAATTAAGTAACTTAC
1 ATAACTTACATAACTTACATAACTTACATAACTTACATAACTTGCATAAATTAAATAACTTAC
65087713 CCGTGCAAAT
Statistics
Matches: 321, Mismatches: 37, Indels: 13
0.87 0.10 0.04
Matches are distributed among these distances:
99 31 0.10
100 236 0.74
101 53 0.17
102 1 0.00
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (99 bp):
ATAACTTACATAACTTACATAACTTACATAACTTACATAACTTGCATAAATTAAATAACTTACAT
AACTTACATAACCTACATAAATTAAATAACTTAC
Found at i:65091440 original size:66 final size:66
Alignment explanation
Indices: 65091370--65091501 Score: 212
Period size: 66 Copynumber: 2.0 Consensus size: 66
65091360 GACCACAGTT
* *
65091370 GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAGAA-CAGATGCGGCAGCGAGAGAAG
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCGACAACTTA-AAGCAGATGCGGCAGCCAGAGAAG
65091434 CA
65 CA
* *
65091436 GAGGTTCAAAAGAAATATGAAGAACTCCAGCGACAACTTAAAGCTGATGCGGCATCCAGAGAAGC
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCGACAACTTAAAGCAGATGCGGCAGCCAGAGAAGC
65091501 A
66 A
65091502 AAGGCTGCAG
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
65 2 0.03
66 59 0.97
ACGTcount: A:0.42, C:0.19, G:0.25, T:0.14
Consensus pattern (66 bp):
GAGGTTCAAAAGAAATATGAAGAACTCCAGCGACAACTTAAAGCAGATGCGGCAGCCAGAGAAGC
A
Found at i:65091920 original size:43 final size:43
Alignment explanation
Indices: 65091859--65092046 Score: 215
Period size: 43 Copynumber: 4.4 Consensus size: 43
65091849 AAAAGTGGCG
65091859 TTTGTGTAAAAAGCGCCGCTAAAGAACAT-TAGCTTTAGCGGCA
1 TTTGTGTAAAAAGCGCCGCTAAAGAACATGT-GCTTTAGCGGCA
* * * * * *
65091902 TTTGTGTTAGAAGTGCCGCTAAAGAACATGTTCTTTAGTGGCG
1 TTTGTGTAAAAAGCGCCGCTAAAGAACATGTGCTTTAGCGGCA
* *
65091945 TTTGTGTAAAAAGCGCCGCTAAAGAACATGTTCTTCAGC-G--
1 TTTGTGTAAAAAGCGCCGCTAAAGAACATGTGCTTTAGCGGCA
* * *
65091985 TTTGTGTAGAAAA-CGCCGCTAAAGAACATGTTCTTCAGCGGCG
1 TTTGTGTA-AAAAGCGCCGCTAAAGAACATGTGCTTTAGCGGCA
*
65092028 TTTGTGTAGAAAGCGCCGC
1 TTTGTGTAAAAAGCGCCGC
65092047 AAATACTTTT
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
40 34 0.27
41 5 0.04
42 4 0.03
43 83 0.65
44 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (43 bp):
TTTGTGTAAAAAGCGCCGCTAAAGAACATGTGCTTTAGCGGCA
Found at i:65092031 original size:83 final size:85
Alignment explanation
Indices: 65091855--65092046 Score: 266
Period size: 83 Copynumber: 2.3 Consensus size: 85
65091845 AACAAAAAGT
* **
65091855 GGCGTTTGTGTAAAAAGCGCCGCTAAAGAACATTAGCTTTAGCGGCATTTGTGTTAGAAGTGCCG
1 GGCGTTTGTGTAAAAAGCGCCGCTAAAGAACATTAGCTTCAGCGG-ATTTGTGTTAGAAACGCCG
* *
65091920 CTAAAGAACATGTTCTTTAGT
65 CTAAAGAACATGTTCTTCAGC
*
65091941 GGCGTTTGTGTAAAAAGCGCCGCTAAAGAACATGT-TCTTCAGC-G-TTTGTG-TAGAAAACGCC
1 GGCGTTTGTGTAAAAAGCGCCGCTAAAGAACAT-TAGCTTCAGCGGATTTGTGTTAG-AAACGCC
65092002 GCTAAAGAACATGTTCTTCAGC
64 GCTAAAGAACATGTTCTTCAGC
*
65092024 GGCGTTTGTGTAGAAAGCGCCGC
1 GGCGTTTGTGTAAAAAGCGCCGC
65092047 AAATACTTTT
Statistics
Matches: 97, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
82 3 0.03
83 53 0.55
85 1 0.01
86 39 0.40
87 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (85 bp):
GGCGTTTGTGTAAAAAGCGCCGCTAAAGAACATTAGCTTCAGCGGATTTGTGTTAGAAACGCCGC
TAAAGAACATGTTCTTCAGC
Found at i:65102527 original size:21 final size:21
Alignment explanation
Indices: 65102495--65102535 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
65102485 GAACATTTGG
65102495 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
65102516 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
65102536 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:65105714 original size:43 final size:43
Alignment explanation
Indices: 65105667--65105847 Score: 263
Period size: 43 Copynumber: 4.2 Consensus size: 43
65105657 TAGTGAAAAT
65105667 GCCGCTATAAGTCTTGGCCTTTAGCGGCATTTTTTTTACAAAC
1 GCCGCTATAAGTCTTGGCCTTTAGCGGCATTTTTTTTACAAAC
*
65105710 GCCGCTAAAAGTCTTGGCCTTTAGCGGCACTTTTGTTTTACAAAC
1 GCCGCTATAAGTCTTGGCCTTTAGCGGCA-TTTT-TTTTACAAAC
* * ** *
65105755 GCCGCTATAAGTCTTGGCCTTTAGTGACGCTTTTTTTGCAAAC
1 GCCGCTATAAGTCTTGGCCTTTAGCGGCATTTTTTTTACAAAC
* * *
65105798 GCCGCTATAAGTCTTAGCCATTAGCGGCGTTTTTTTTACAAAC
1 GCCGCTATAAGTCTTGGCCTTTAGCGGCATTTTTTTTACAAAC
65105841 GCCGCTA
1 GCCGCTA
65105848 GTTTAGGTAT
Statistics
Matches: 123, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
43 81 0.66
44 7 0.06
45 35 0.28
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (43 bp):
GCCGCTATAAGTCTTGGCCTTTAGCGGCATTTTTTTTACAAAC
Found at i:65105775 original size:88 final size:86
Alignment explanation
Indices: 65105667--65105847 Score: 263
Period size: 88 Copynumber: 2.1 Consensus size: 86
65105657 TAGTGAAAAT
* * * *
65105667 GCCGCTATAAGTCTTGGCCTTTAGCGGCATTTTTTTTACAAACGCCGCTAAAAGTCTTGGCCTTT
1 GCCGCTATAAGTCTTGGCCTTTAGCGACACTTTTTTTACAAACGCCGCTAAAAGTCTTAGCCATT
65105732 AGCGGCACTTTTGTTTTACAAAC
66 AGCGGC-CTTTT-TTTTACAAAC
* * * *
65105755 GCCGCTATAAGTCTTGGCCTTTAGTGACGCTTTTTTTGCAAACGCCGCTATAAGTCTTAGCCATT
1 GCCGCTATAAGTCTTGGCCTTTAGCGACACTTTTTTTACAAACGCCGCTAAAAGTCTTAGCCATT
*
65105820 AGCGGCGTTTTTTTTACAAAC
66 AGCGGCCTTTTTTTTACAAAC
65105841 GCCGCTA
1 GCCGCTA
65105848 GTTTAGGTAT
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
86 17 0.20
87 4 0.05
88 63 0.75
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (86 bp):
GCCGCTATAAGTCTTGGCCTTTAGCGACACTTTTTTTACAAACGCCGCTAAAAGTCTTAGCCATT
AGCGGCCTTTTTTTTACAAAC
Found at i:65106184 original size:24 final size:21
Alignment explanation
Indices: 65106142--65106200 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
65106132 ATTTTGCTCT
* *
65106142 GCCTCCCTCGCTGTTGCCGTC
1 GCCTCCCTCGCTGCTGCCGCC
*
65106163 GCCTTCCTCGCTGCTGCCGCC
1 GCCTCCCTCGCTGCTGCCGCC
65106184 GCCTCCCTCGCTGCTGC
1 GCCTCCCTCGCTGCTGC
65106201 ATCTGCTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.00, C:0.51, G:0.24, T:0.25
Consensus pattern (21 bp):
GCCTCCCTCGCTGCTGCCGCC
Found at i:65106616 original size:13 final size:14
Alignment explanation
Indices: 65106590--65106618 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
65106580 ACTAACGACG
65106590 AATTAAACCATTAT
1 AATTAAACCATTAT
65106604 AATTAAA-CATTAT
1 AATTAAACCATTAT
65106617 AA
1 AA
65106619 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:65106641 original size:17 final size:19
Alignment explanation
Indices: 65106615--65106653 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
65106605 ATTAAACATT
*
65106615 ATAAATATTTA-TAA-TAA
1 ATAAAAATTTATTAAGTAA
65106632 ATAAAAATTTATTAAGTAA
1 ATAAAAATTTATTAAGTAA
65106651 ATA
1 ATA
65106654 TACCATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 10 0.53
18 3 0.16
19 6 0.32
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
ATAAAAATTTATTAAGTAA
Found at i:65109433 original size:9 final size:9
Alignment explanation
Indices: 65109420--65109492 Score: 100
Period size: 9 Copynumber: 8.6 Consensus size: 9
65109410 AATTTATGTA
*
65109420 TTATGTAAA
1 TTATGTAAG
65109429 TTATGTAAG
1 TTATGTAAG
65109438 TTATGT-A-
1 TTATGTAAG
65109445 TTATGTAAG
1 TTATGTAAG
65109454 TTATGTAAG
1 TTATGTAAG
*
65109463 TTGTGT-A-
1 TTATGTAAG
65109470 TTATGTAAG
1 TTATGTAAG
65109479 TTATGTAAG
1 TTATGTAAG
65109488 TTATG
1 TTATG
65109493 ATATAAAAGA
Statistics
Matches: 57, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
7 11 0.19
8 4 0.07
9 42 0.74
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:65109434 original size:16 final size:17
Alignment explanation
Indices: 65109408--65109492 Score: 79
Period size: 16 Copynumber: 5.0 Consensus size: 17
65109398 TGATATGATA
65109408 TAAATTTATGTA-TTATG
1 TAAA-TTATGTAGTTATG
65109425 TAAATTATGTAAGTTATG
1 TAAATTATGT-AGTTATG
65109443 T--ATTATGTAAGTTATG
1 TAAATTATGT-AGTTATG
* *
65109459 TAAGTTGTGTA-TTATG
1 TAAATTATGTAGTTATG
*
65109475 TAAGTTATGTAAGTTATG
1 TAAATTATGT-AGTTATG
65109493 ATATAAAAGA
Statistics
Matches: 59, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
16 36 0.61
17 7 0.12
18 16 0.27
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.48
Consensus pattern (17 bp):
TAAATTATGTAGTTATG
Found at i:65109441 original size:25 final size:25
Alignment explanation
Indices: 65109413--65109492 Score: 142
Period size: 25 Copynumber: 3.2 Consensus size: 25
65109403 TGATATAAAT
*
65109413 TTATGTATTATGTAAATTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAG
65109438 TTATGTATTATGTAAGTTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAG
*
65109463 TTGTGTATTATGTAAGTTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAG
65109488 TTATG
1 TTATG
65109493 ATATAAAAGA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 52 1.00
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (25 bp):
TTATGTATTATGTAAGTTATGTAAG
Found at i:65110193 original size:30 final size:31
Alignment explanation
Indices: 65110108--65110197 Score: 85
Period size: 30 Copynumber: 2.8 Consensus size: 31
65110098 ACACCTATGG
65110108 AAAGAAACATAAAGCAGACAGTCAGCAGCAAAATA
1 AAAGAAACATAAAG-AGACAGT-A--AGCAAAATA
* ** *
65110143 AAATGATATTTACA-AGACAGTAAGCAAAAT-
1 AAA-GAAACATAAAGAGACAGTAAGCAAAATA
65110173 AAAGAAACATAAAGAGACAGTAAGC
1 AAAGAAACATAAAGAGACAGTAAGC
65110198 CCTAAAATTC
Statistics
Matches: 45, Mismatches: 8, Indels: 9
0.73 0.13 0.15
Matches are distributed among these distances:
29 6 0.13
30 14 0.31
31 8 0.18
33 1 0.02
34 7 0.16
35 3 0.07
36 6 0.13
ACGTcount: A:0.57, C:0.13, G:0.17, T:0.13
Consensus pattern (31 bp):
AAAGAAACATAAAGAGACAGTAAGCAAAATA
Found at i:65119596 original size:153 final size:153
Alignment explanation
Indices: 65119211--65119579 Score: 564
Period size: 153 Copynumber: 2.4 Consensus size: 153
65119201 ATATTTCACC
* ** *
65119211 TGATATTTCTGGTCTATCCTGTTTG-GAAATACTTGATCTTAGTGGTAACAATTTCATCAGCATA
1 TGATATTTCTGGTCTATCCTCTTTGAGTTAT-CTTAATCTTAGTGGTAACAATTTCATCAGCATA
* * * *
65119275 CCTGCATCTCTTACTCGACTCTCGAAGCTTGCATATCTTATATTGTCAAATTGCAACTTGTGCAC
65 CCTGCATCTCTTACTCGACTCTCAAAGCTTGAATATCTTATATTATCAAATTGCAACATGTGCAC
*
65119340 TTTTGGTGAAACAGATACTCATAG
130 TCTTGGTGAAACAGATACTCATAG
*
65119364 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAAGAATTTCATCAGCATAC
1 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
*
65119429 CTGCATCTCTTACTCGACTCTCAAAGCTT-AAGTCTCTTGA-ATTATCAAATTGCAACATGTGCA
66 CTGCATCTCTTACTCGACTCTCAAAGCTTGAA-TATCTT-ATATTATCAAATTGCAACATGTGCA
*
65119492 CTCTTGGTGAAGCAGATACTCATAG
129 CTCTTGGTGAAACAGATACTCATAG
* *
65119517 TGATATTTCTGGTCTATCCTCTTAGAGTTATCTTTATCTTAGTGGTAACAATTTCATCAGCAT
1 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCAT
65119580 TCCTTTGGCT
Statistics
Matches: 198, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
152 1 0.01
153 193 0.97
154 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (153 bp):
TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
CTGCATCTCTTACTCGACTCTCAAAGCTTGAATATCTTATATTATCAAATTGCAACATGTGCACT
CTTGGTGAAACAGATACTCATAG
Found at i:65119636 original size:153 final size:152
Alignment explanation
Indices: 65119211--65119628 Score: 545
Period size: 153 Copynumber: 2.7 Consensus size: 152
65119201 ATATTTCACC
* ** *
65119211 TGATATTTCTGGTCTATCCTGTTTG-GAAATACTTGATCTTAGTGGTAACAATTTCATCAGCATA
1 TGATATTTCTGGTCTATCCTCTTTGAGTTAT-CTTAATCTTAGTGGTAACAATTTCATCAGCATA
* * *
65119275 CCTGCATCTCTTACTCGACTCTCGAAGCTTGCATA-TCTT-ATATTGTCAAATTGCAACTTGTGC
65 CCTGCATCTCTTACTCGACTCTCAAAGC-T-CAAATTCTTGA-ATTGTCAAATTGCAACATGTGC
*
65119338 ACTTTTGGTGAAACAGATACTCATAG
127 ACTCTTGGTGAAACAGATACTCATAG
*
65119364 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAAGAATTTCATCAGCATAC
1 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
* * *
65119429 CTGCATCTCTTACTCGACTCTCAAAGCTTAAGTCTCTTGAATTATCAAATTGCAACATGTGCACT
66 CTGCATCTCTTACTCGACTCTCAAAGCTCAAAT-TCTTGAATTGTCAAATTGCAACATGTGCACT
*
65119494 CTTGGTGAAGCAGATACTCATAG
130 CTTGGTGAAACAGATACTCATAG
* * *
65119517 TGATATTTCTGGTCTATCCTCTTAGAGTTATCTTTATCTTAGTGGTAACAATTTCATCAGCATTC
1 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
**** * * * *
65119582 CTTTGGCTCTTACTCAACTTTCCAGGCTCAAATTGCTTGAATTGTCA
66 CTGCATCTCTTACTCGACTCTCAAAGCTCAAATT-CTTGAATTGTCA
65119629 GGTTGCAAGA
Statistics
Matches: 232, Mismatches: 28, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
151 1 0.00
152 2 0.01
153 225 0.97
154 4 0.02
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (152 bp):
TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
CTGCATCTCTTACTCGACTCTCAAAGCTCAAATTCTTGAATTGTCAAATTGCAACATGTGCACTC
TTGGTGAAACAGATACTCATAG
Found at i:65123109 original size:153 final size:152
Alignment explanation
Indices: 65122846--65123213 Score: 526
Period size: 153 Copynumber: 2.4 Consensus size: 152
65122836 ATATTCCACC
* * *
65122846 TGATATTTCTGGTCTATCCTCTTTG-GTATCTCTTGATCTTAGTGGTAATAATTTCATCAGCATA
1 TGATATTTCTGGTCTATCCTCTTTGAGTA--TCTTAATCTTAGTGGTAACAATTTCATCAGCAAA
* *
65122910 CCTGCATCTCTTACTCGACTCTCGAAGCTTGAAAATCTTAAATTGTCAAATTGCAACATGTGCAC
64 CCTGCATCTCTTACTCGACTCTCAAAGCTTCAAAATCTTAAATTGTCAAATTGCAACATGTGCAC
* *
65122975 TTTTGGTGAAGCAGATACTCATAG
129 TCTTGGTGAAGCAGATACTAATAG
*
65122999 TGATATTTCTGGTCTATCCTCTTTGAGTCATCTTAATCTTAATGGTAACAATTTCATCAGCAAAC
1 TGATATTTCTGGTCTATCCTCTTTGAGT-ATCTTAATCTTAGTGGTAACAATTTCATCAGCAAAC
* * *
65123064 CTGCATCTCTTACTCGACTCTCAAAGC-TC-AAGTCACTTCACTTGTCAAATTGCAACATGTGCA
65 CTGCATCTCTTACTCGACTCTCAAAGCTTCAAAAT--CTTAAATTGTCAAATTGCAACATGTGCA
65123127 CTCTTGGTGAAGCAGATACTAATAG
128 CTCTTGGTGAAGCAGATACTAATAG
* * * *
65123152 TGACATTTTTGGTCTATCCTCTTTGAGTTATCTTTATCTTTGTGGTAACAATTTCATCAGCA
1 TGATATTTCTGGTCTATCCTCTTTGAG-TATCTTAATCTTAGTGGTAACAATTTCATCAGCA
65123214 TTCCTTCGGC
Statistics
Matches: 194, Mismatches: 16, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
151 3 0.02
152 1 0.01
153 186 0.96
154 3 0.02
155 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (152 bp):
TGATATTTCTGGTCTATCCTCTTTGAGTATCTTAATCTTAGTGGTAACAATTTCATCAGCAAACC
TGCATCTCTTACTCGACTCTCAAAGCTTCAAAATCTTAAATTGTCAAATTGCAACATGTGCACTC
TTGGTGAAGCAGATACTAATAG
Found at i:65143048 original size:3 final size:3
Alignment explanation
Indices: 65143040--65143079 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
65143030 TATACATTTC
* * *
65143040 ATT ATT ATT ATC ATT ATT ATT ATT ATT ATC ATT TTT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
65143080 GTGTTTAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:65147074 original size:27 final size:25
Alignment explanation
Indices: 65147023--65147070 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
65147013 AATGTATGTA
65147023 TTTTTGAAATATTAATGGTATATTT
1 TTTTTGAAATATTAATGGTATATTT
65147048 TTTTGTGAAA-ATTAATGGTATAT
1 TTTT-TGAAATATTAATGGTATAT
65147071 ATTTAATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (25 bp):
TTTTTGAAATATTAATGGTATATTT
Found at i:65148846 original size:153 final size:155
Alignment explanation
Indices: 65148510--65148881 Score: 572
Period size: 153 Copynumber: 2.4 Consensus size: 155
65148500 ATATTCCACC
* * *
65148510 TGATATTTCTGGTCTATCCTCTTTG-GTATCTCTTGATCTTAGTGGTAATAATTTCATCAGCATA
1 TGATATTTCTGGTCTATCCTCTTTGAGT-TATCTTAATCTTAGTGGTAACAATTTCATCAGCATA
* *
65148574 CCTGCATCTCTTACTCGACTCTCGAAGCTTGCAAATCTTATATTAATGTCAAATTGCAACATGTG
65 CCTGCATCTCTTACTCGACTCTCAAAGCTTACAAATCTTATATT-ATGTCAAATTGCAACATGTG
*
65148639 CACTTTTGGTGAAGCAGATACTCATAG
129 CACTCTTGGTGAAGCAGATACTCATAG
* *
65148666 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAAGAATTTCATCCGCATAC
1 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
** *
65148731 CTGCATCTCTTACTCGACTCTCAAAGCTTACGTATCTTGA-A-T-TGTCTAATTGCAACATGTGC
66 CTGCATCTCTTACTCGACTCTCAAAGCTTACAAATCTT-ATATTATGTCAAATTGCAACATGTGC
65148793 ACTCTTGGTGAAGCAGATACTCATAG
130 ACTCTTGGTGAAGCAGATACTCATAG
* *
65148819 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTATTGGTAACAATTTCACCAGCAT
1 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCAT
65148882 TCCTTTGGCT
Statistics
Matches: 200, Mismatches: 14, Indels: 7
0.90 0.06 0.03
Matches are distributed among these distances:
153 103 0.51
155 1 0.00
156 93 0.47
157 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.39
Consensus pattern (155 bp):
TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
CTGCATCTCTTACTCGACTCTCAAAGCTTACAAATCTTATATTATGTCAAATTGCAACATGTGCA
CTCTTGGTGAAGCAGATACTCATAG
Found at i:65154908 original size:12 final size:12
Alignment explanation
Indices: 65154893--65154928 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
65154883 TTTATACATT
65154893 TCATTATTATTA
1 TCATTATTATTA
65154905 TCATTATTATTA
1 TCATTATTATTA
*
65154917 TCATTTTTATTA
1 TCATTATTATTA
65154929 GTGTTTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.61
Consensus pattern (12 bp):
TCATTATTATTA
Found at i:65156427 original size:14 final size:14
Alignment explanation
Indices: 65156387--65156441 Score: 51
Period size: 14 Copynumber: 4.0 Consensus size: 14
65156377 AGTCTAAAGG
*
65156387 TTTACATTTATTTT
1 TTTACTTTTATTTT
* *
65156401 TTTAGTTCT-TTTT
1 TTTACTTTTATTTT
65156414 TTTACTTTTATTTT
1 TTTACTTTTATTTT
*
65156428 TATT-TTTTTATTTT
1 T-TTACTTTTATTTT
65156442 CACTTGTATG
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
13 11 0.33
14 20 0.61
15 2 0.06
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTACTTTTATTTT
Found at i:65166881 original size:3 final size:3
Alignment explanation
Indices: 65166873--65166898 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
65166863 ATTAGCATTG
65166873 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
65166899 CACTATTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:65167344 original size:6 final size:6
Alignment explanation
Indices: 65167333--65167361 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
65167323 CGCACCTATA
65167333 TATATC TATATC TATATC TATATC TATAT
1 TATATC TATATC TATATC TATATC TATAT
65167362 ATGTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (6 bp):
TATATC
Found at i:65167435 original size:19 final size:20
Alignment explanation
Indices: 65167413--65167450 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
65167403 TCTATGTATT
*
65167413 TTTTATATATAT-TACATAA
1 TTTTATATACATATACATAA
65167432 TTTTATATACATATACATA
1 TTTTATATACATATACATA
65167451 GATGTACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (20 bp):
TTTTATATACATATACATAA
Found at i:65176063 original size:17 final size:17
Alignment explanation
Indices: 65176037--65176083 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
65176027 AATTTTGCTA
65176037 TTATTATTATTTAC-TATT
1 TTATT-TTATTTACAT-TT
*
65176055 TTATTTTATTTTCATTT
1 TTATTTTATTTACATTT
65176072 TTATTTTTATTT
1 TTA-TTTTATTT
65176084 TTGCAGGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 12 0.46
18 14 0.54
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.74
Consensus pattern (17 bp):
TTATTTTATTTACATTT
Found at i:65176071 original size:23 final size:23
Alignment explanation
Indices: 65176037--65176084 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
65176027 AATTTTGCTA
65176037 TTATTATTATTTACTA-TTTTATT
1 TTATTATTATTT-CTATTTTTATT
*
65176060 TTATT-TTCATTTTTATTTTTATT
1 TTATTATT-ATTTCTATTTTTATT
65176083 TT
1 TT
65176085 TGCAGGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (23 bp):
TTATTATTATTTCTATTTTTATT
Found at i:65176085 original size:6 final size:6
Alignment explanation
Indices: 65176053--65176085 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
65176043 TTATTTACTA
*
65176053 TTTTA- TTTTAT TTTCAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
65176086 GCAGGAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTAT
Done.