Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 22 of 226
Found at i:7684038 original size:20 final size:19
Alignment explanation
Indices: 7683991--7684038 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
7683981 TATTTAATAT
* * *
7683991 TTTATAAATTTTAATAATA
1 TTTAAAAATTTTAAAAAAA
*
7684010 TTTACAAATTTATAAAAAAA
1 TTTAAAAATTT-TAAAAAAA
7684030 TTTAAAAAT
1 TTTAAAAAT
7684039 AATTTTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (19 bp):
TTTAAAAATTTTAAAAAAA
Found at i:7695318 original size:31 final size:31
Alignment explanation
Indices: 7695282--7695343 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
7695272 AACGGATTCA
7695282 GAATTAATTATAATTGGATCAAGTCTAATGT
1 GAATTAATTATAATTGGATCAAGTCTAATGT
* *
7695313 GAATTAATTATACTTGGGTCAAGTCTAATGT
1 GAATTAATTATAATTGGATCAAGTCTAATGT
7695344 ATCATTCTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (31 bp):
GAATTAATTATAATTGGATCAAGTCTAATGT
Found at i:7699987 original size:26 final size:26
Alignment explanation
Indices: 7699958--7700013 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
7699948 TAATTATTGA
7699958 AAAATAAAATAA-ATATATATTTTTTT
1 AAAATAAAATAATA-ATATATTTTTTT
* *
7699984 AAAATTAAATATTAATATATTTTTTT
1 AAAATAAAATAATAATATATTTTTTT
7700010 AAAA
1 AAAA
7700014 AAATAACAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
AAAATAAAATAATAATATATTTTTTT
Found at i:7701601 original size:11 final size:11
Alignment explanation
Indices: 7701585--7701627 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
7701575 AATCAAATTA
7701585 GTATATATTTT
1 GTATATATTTT
*
7701596 GTATATATTTC
1 GTATATATTTT
* *
7701607 ATTTA-ATTTT
1 GTATATATTTT
7701617 GTATATATTTT
1 GTATATATTTT
7701628 TATGTCTTGT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
10 7 0.28
11 18 0.72
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (11 bp):
GTATATATTTT
Found at i:7703270 original size:27 final size:25
Alignment explanation
Indices: 7703232--7703282 Score: 59
Period size: 27 Copynumber: 2.0 Consensus size: 25
7703222 TATATGTATG
*
7703232 TTTTTAGTAAATTTATATATTTTTAAT
1 TTTTTAGTAAATAT-TA-ATTTTTAAT
7703259 TTTTTA-TAAAATATTAATTTTTAA
1 TTTTTAGT-AAATATTAATTTTTAA
7703283 GTTATTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 8 0.36
26 3 0.14
27 11 0.50
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (25 bp):
TTTTTAGTAAATATTAATTTTTAAT
Found at i:7703409 original size:23 final size:22
Alignment explanation
Indices: 7703361--7703437 Score: 75
Period size: 22 Copynumber: 3.4 Consensus size: 22
7703351 AATATTTTGA
7703361 ATAATATAAAAAATTTATAATAT
1 ATAATAT-AAAAATTTATAATAT
*
7703384 ATAATATAAAAATTTATAAATTT
1 ATAATATAAAAATTTAT-AATAT
* * *
7703407 ATAA-ATATACATGTATATATAT
1 ATAATATAAAAATTTATA-ATAT
7703429 ATATATATA
1 ATA-ATATA
7703438 TATAAGAACC
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
21 1 0.02
22 25 0.56
23 16 0.36
24 3 0.07
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (22 bp):
ATAATATAAAAATTTATAATAT
Found at i:7703736 original size:15 final size:14
Alignment explanation
Indices: 7703716--7703762 Score: 55
Period size: 15 Copynumber: 3.5 Consensus size: 14
7703706 TTCCTTTTTG
7703716 TTAATTTATATATTT
1 TTAATTTATA-ATTT
*
7703731 TTAATTTTTAATTT
1 TTAATTTATAATTT
7703745 TTAA--TAT-ATTT
1 TTAATTTATAATTT
7703756 TTAATTT
1 TTAATTT
7703763 TAAAATAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 8 0.29
12 2 0.07
13 1 0.04
14 8 0.29
15 9 0.32
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTAATTTATAATTT
Found at i:7703763 original size:7 final size:7
Alignment explanation
Indices: 7703716--7703749 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
7703706 TTCCTTTTTG
7703716 TTAATTT
1 TTAATTT
*
7703723 ATATATTT
1 TTA-ATTT
7703731 TTAATTT
1 TTAATTT
7703738 TTAATTT
1 TTAATTT
7703745 TTAAT
1 TTAAT
7703750 ATATTTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
TTAATTT
Found at i:7703774 original size:25 final size:25
Alignment explanation
Indices: 7703723--7703777 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
7703713 TTGTTAATTT
* * **
7703723 ATATATTTTTAATTTTTAATTTTTA
1 ATATATTTTTAATTTTAAAATAATA
7703748 ATATATTTTTAATTTTAAAATAATA
1 ATATATTTTTAATTTTAAAATAATA
7703773 ATATA
1 ATATA
7703778 AATAACCTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
ATATATTTTTAATTTTAAAATAATA
Found at i:7705287 original size:9 final size:9
Alignment explanation
Indices: 7705270--7705306 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
7705260 TGAGTTTTCG
7705270 AATTCGAAT
1 AATTCGAAT
*
7705279 AACTCGAAT
1 AATTCGAAT
7705288 AATTCGAAT
1 AATTCGAAT
7705297 AATTCGAAT
1 AATTCGAAT
7705306 A
1 A
7705307 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:7705549 original size:26 final size:26
Alignment explanation
Indices: 7705520--7705569 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
7705510 AAACCTTTTA
*
7705520 TTTTCCCCCAAAATTTTTACTCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCAC
* *
7705546 TTTTCCCCTAAAACTTTTATTCCC
1 TTTTCCCCCAAAACTTTTACTCCC
7705570 TTCTCACCCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.36, G:0.00, T:0.42
Consensus pattern (26 bp):
TTTTCCCCCAAAACTTTTACTCCCAC
Found at i:7706713 original size:10 final size:11
Alignment explanation
Indices: 7706682--7706710 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
7706672 TGATATTAGA
7706682 GATATTTTAAT
1 GATATTTTAAT
7706693 GATATTTTAAT
1 GATATTTTAAT
7706704 GATATTT
1 GATATTT
7706711 AATTAGATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (11 bp):
GATATTTTAAT
Found at i:7708598 original size:45 final size:46
Alignment explanation
Indices: 7708530--7708625 Score: 133
Period size: 46 Copynumber: 2.1 Consensus size: 46
7708520 ATTGACGAAT
* * * *
7708530 AATT-TTATGTATTTAATATATTGTT-GAAAAATGGAATGTTGTTA
1 AATTATTATGTATTTAACATATTGTTAAAAAAATGAAATATTGTTA
*
7708574 AATTATTATGTATTTAGCATATTGTTAAAAAAATGAAATATTGTTA
1 AATTATTATGTATTTAACATATTGTTAAAAAAATGAAATATTGTTA
7708620 AATTAT
1 AATTAT
7708626 GAATTGAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
44 4 0.09
45 19 0.42
46 22 0.49
ACGTcount: A:0.41, C:0.01, G:0.12, T:0.46
Consensus pattern (46 bp):
AATTATTATGTATTTAACATATTGTTAAAAAAATGAAATATTGTTA
Found at i:7708711 original size:24 final size:24
Alignment explanation
Indices: 7708684--7708731 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
7708674 TCGTTTTGTG
*
7708684 GCAAAGGATCAATTGA-AGACAAAT
1 GCAAAGGATAAATTGACAG-CAAAT
7708708 GCAAAGGATAAATTGACAGCAAAT
1 GCAAAGGATAAATTGACAGCAAAT
7708732 TACCCAAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.91
25 2 0.09
ACGTcount: A:0.50, C:0.12, G:0.21, T:0.17
Consensus pattern (24 bp):
GCAAAGGATAAATTGACAGCAAAT
Found at i:7708845 original size:21 final size:21
Alignment explanation
Indices: 7708821--7708887 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
7708811 ACTCATATGA
7708821 GTTTCAGTTTAACCCTTATAG
1 GTTTCAGTTTAACCCTTATAG
* * * * *
7708842 GTTTCTGTTCAGCTCTTTTTA-
1 GTTTCAGTTTAAC-CCTTATAG
* *
7708863 GCTTCAGTTTAACCCTTATGG
1 GTTTCAGTTTAACCCTTATAG
7708884 GTTT
1 GTTT
7708888 TTGTTCAGCT
Statistics
Matches: 31, Mismatches: 13, Indels: 4
0.65 0.27 0.08
Matches are distributed among these distances:
20 4 0.13
21 22 0.71
22 5 0.16
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.48
Consensus pattern (21 bp):
GTTTCAGTTTAACCCTTATAG
Found at i:7708887 original size:42 final size:43
Alignment explanation
Indices: 7708822--7708943 Score: 149
Period size: 42 Copynumber: 2.9 Consensus size: 43
7708812 CTCATATGAG
* ***
7708822 TTTCAGTTTAACCCTTATAGGTTTCTGTTCAGCTCTTTTTAGC
1 TTTCAGTTTAACCCTTATGGGTTTCTGTTCAGCTCTTACGAGC
*
7708865 -TTCAGTTTAACCCTTATGGGTTTTTGTTCAGCTCTTACGAGC
1 TTTCAGTTTAACCCTTATGGGTTTCTGTTCAGCTCTTACGAGC
* * * *
7708907 TTTC-GTTCAAACCTTATGGGTTTCTGTTTAGCACTTA
1 TTTCAGTTTAACCCTTATGGGTTTCTGTTCAGCTCTTA
7708944 TGTGCTTCTG
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 65 0.96
43 3 0.04
ACGTcount: A:0.17, C:0.20, G:0.16, T:0.46
Consensus pattern (43 bp):
TTTCAGTTTAACCCTTATGGGTTTCTGTTCAGCTCTTACGAGC
Found at i:7710691 original size:41 final size:40
Alignment explanation
Indices: 7710646--7710747 Score: 141
Period size: 41 Copynumber: 2.5 Consensus size: 40
7710636 TGATTCAGTA
7710646 CACCGGCACTTAGCCTGCTAGACATATAGTCTGAAATATTT
1 CACCGGCA-TTAGCCTGCTAGACATATAGTCTGAAATATTT
* * *
7710687 CACCGGCATTAAGCCTGCTAGACATTTAGTCTGAAGTGTTT
1 CACCGGCATT-AGCCTGCTAGACATATAGTCTGAAATATTT
*
7710728 CACCGGCAATAAGCCTGCTA
1 CACCGGC-ATTAGCCTGCTA
7710748 AGCGCTAAGC
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
40 2 0.04
41 51 0.93
42 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (40 bp):
CACCGGCATTAGCCTGCTAGACATATAGTCTGAAATATTT
Found at i:7710762 original size:41 final size:41
Alignment explanation
Indices: 7710646--7710762 Score: 112
Period size: 41 Copynumber: 2.9 Consensus size: 41
7710636 TGATTCAGTA
* * * * *
7710646 CACCGGCACTTAGCCTGCTAGACA-TATAGTCTGAAATATTT
1 CACCGGCAATAAGCCTGCTAGACACTA-AGCCTGAAGTGTTT
* * * *
7710687 CACCGGCATTAAGCCTGCTAGACATTTAGTCTGAAGTGTTT
1 CACCGGCAATAAGCCTGCTAGACACTAAGCCTGAAGTGTTT
*
7710728 CACCGGCAATAAGCCTGCTA-AGCGCTAAGCCTGAA
1 CACCGGCAATAAGCCTGCTAGA-CACTAAGCCTGAA
7710763 AATCTCAATT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
40 1 0.02
41 62 0.97
42 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (41 bp):
CACCGGCAATAAGCCTGCTAGACACTAAGCCTGAAGTGTTT
Found at i:7712348 original size:13 final size:13
Alignment explanation
Indices: 7712330--7712354 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7712320 CAATAAAATG
7712330 CACACAAAATAAA
1 CACACAAAATAAA
7712343 CACACAAAATAA
1 CACACAAAATAA
7712355 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:7715469 original size:42 final size:43
Alignment explanation
Indices: 7715416--7715515 Score: 139
Period size: 42 Copynumber: 2.3 Consensus size: 43
7715406 GATTTGAGAT
*
7715416 TTACGTGTAAGACCATATCTGGGACATTAGCATCG-TATATGA
1 TTACGTGTAAGACCATATCTGGGACAGTAGCATCGATATATGA
* * * *
7715458 TTACGTGTAAGACCCTATCTGGGACAGTGGCATTGATATTTGA
1 TTACGTGTAAGACCATATCTGGGACAGTAGCATCGATATATGA
*
7715501 TTACTTGTAAGACCA
1 TTACGTGTAAGACCA
7715516 CGTTTGGGAC
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 31 0.62
43 19 0.38
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (43 bp):
TTACGTGTAAGACCATATCTGGGACAGTAGCATCGATATATGA
Found at i:7715524 original size:43 final size:43
Alignment explanation
Indices: 7715375--7715535 Score: 150
Period size: 43 Copynumber: 3.7 Consensus size: 43
7715365 AATGTGTTAT
* * *
7715375 CGTGTAAGACCACGTCTAGGACGTTGGCATGGAT-TTGAGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATTGATATT-TGA-TTA
** * * * *
7715419 CGTGTAAGACCATATCTGGGACATTAGCATCG-TATATGATTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATTGATATTTGATTA
*
7715461 CGTGTAAGACC-CTATCTGGGACAG-TGGCATTGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATTGATATTTGATTA
* *
7715504 CTTGTAAGACCACGTTTGGGACGTTGGCATTG
1 CGTGTAAGACCACGTCTGGGACGTTGGCATTG
7715536 TACGAGATTT
Statistics
Matches: 95, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
42 30 0.32
43 37 0.39
44 28 0.29
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATTGATATTTGATTA
Found at i:7737139 original size:12 final size:12
Alignment explanation
Indices: 7737104--7737142 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 12
7737094 AAACTGAAAA
7737104 AATGGAAAATTG
1 AATGGAAAATTG
7737116 AATGGTGAAAAATTG
1 AAT-G-G-AAAATTG
7737131 AATGGAAAATTG
1 AATGGAAAATTG
7737143 CATTTGATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
12 10 0.42
13 2 0.08
14 2 0.08
15 10 0.42
ACGTcount: A:0.49, C:0.00, G:0.26, T:0.26
Consensus pattern (12 bp):
AATGGAAAATTG
Found at i:7738167 original size:9 final size:10
Alignment explanation
Indices: 7738129--7738169 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
7738119 AGATAAATAT
*
7738129 TTAAAAATTA
1 TTAAGAATTA
7738139 TTAAGAATTA
1 TTAAGAATTA
7738149 -TAAGAGATTA
1 TTAAGA-ATTA
7738159 TTAA-AATTA
1 TTAAGAATTA
7738168 TT
1 TT
7738170 TTAAATTACA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
9 11 0.39
10 14 0.50
11 3 0.11
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.41
Consensus pattern (10 bp):
TTAAGAATTA
Found at i:7741051 original size:95 final size:93
Alignment explanation
Indices: 7740890--7741075 Score: 336
Period size: 95 Copynumber: 2.0 Consensus size: 93
7740880 AATCTGATCG
7740890 CAATTAAGCGGGATAAAGAAATGACATAATAAAATAAAATTTGAGATAAACCCCAAAATTACACA
1 CAATTAAGCGGGATAAAGAAATGACATAATAAAATAAAATTTGAGATAAACCCCAAAATTACACA
*
7740955 TTAATTTTGATTTAATGTGAAATTGTCA
66 TTAATTTTGATTTAATATGAAATTGTCA
*
7740983 CAATTAAGCGGGATAAAGATAAATGACATAATAAAATAAAATTTGAGATAAACCTCAAAATTACA
1 CAATTAAGCGGGATAAAG--AAATGACATAATAAAATAAAATTTGAGATAAACCCCAAAATTACA
7741048 CATTAATTTTGATTTAATATGAAATTGT
64 CATTAATTTTGATTTAATATGAAATTGT
7741076 TTACATGAAT
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
93 18 0.20
95 71 0.80
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.30
Consensus pattern (93 bp):
CAATTAAGCGGGATAAAGAAATGACATAATAAAATAAAATTTGAGATAAACCCCAAAATTACACA
TTAATTTTGATTTAATATGAAATTGTCA
Found at i:7772160 original size:31 final size:31
Alignment explanation
Indices: 7772122--7772184 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
7772112 TACCACAAAT
7772122 AGAACTCTGGGTATGGTAATGGGAGAGAATC
1 AGAACTCTGGGTATGGTAATGGGAGAGAATC
7772153 AGAACTCTGGGTATGGTAATGGGAGAGAATC
1 AGAACTCTGGGTATGGTAATGGGAGAGAATC
7772184 A
1 A
7772185 TTTTTGGTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.10, G:0.35, T:0.22
Consensus pattern (31 bp):
AGAACTCTGGGTATGGTAATGGGAGAGAATC
Found at i:7775764 original size:27 final size:27
Alignment explanation
Indices: 7775713--7775765 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
7775703 ATACACTTGG
7775713 TTTTTAAAAAATTTAAAAAGTTATAAC
1 TTTTTAAAAAATTTAAAAAGTTATAAC
*
7775740 TTTTTAAAAAAATTTAAGAAG-TATAA
1 TTTTT-AAAAAATTTAAAAAGTTATAA
7775766 AAATTATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 10 0.42
28 14 0.58
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.40
Consensus pattern (27 bp):
TTTTTAAAAAATTTAAAAAGTTATAAC
Found at i:7775775 original size:28 final size:28
Alignment explanation
Indices: 7775718--7775775 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
7775708 CTTGGTTTTT
** *
7775718 AAAAAATTTAAAAAGTTATAACTTTTTA
1 AAAAAATTTAAAAAGTTATAAAATTATA
*
7775746 AAAAAATTTAAGAAG-TATAAAAATTATA
1 AAAAAATTTAAAAAGTTAT-AAAATTATA
7775774 AA
1 AA
7775776 TATATATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
27 3 0.12
28 22 0.88
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (28 bp):
AAAAAATTTAAAAAGTTATAAAATTATA
Found at i:7796837 original size:20 final size:20
Alignment explanation
Indices: 7796812--7796851 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7796802 AATATTTTCC
*
7796812 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
7796832 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
7796852 TTATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:7796866 original size:34 final size:35
Alignment explanation
Indices: 7796800--7796866 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
7796790 CAAACACCAA
*
7796800 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
7796835 AAAACATTTTCCAG-AAATTATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
7796867 CATTTTACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:7806089 original size:12 final size:12
Alignment explanation
Indices: 7806074--7806104 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7806064 TGTATGTATA
7806074 TATGTATATGTC
1 TATGTATATGTC
*
7806086 TATGTCTATGTC
1 TATGTATATGTC
7806098 TATGTAT
1 TATGTAT
7806105 GGATGGATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.10, G:0.16, T:0.52
Consensus pattern (12 bp):
TATGTATATGTC
Found at i:7821237 original size:10 final size:11
Alignment explanation
Indices: 7821205--7821238 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
7821195 TAGGTGGTTC
7821205 TTTCTT-TTCTT
1 TTTCTTATT-TT
7821216 TTTCTTATTTT
1 TTTCTTATTTT
7821227 TTTCTTATTTT
1 TTTCTTATTTT
7821238 T
1 T
7821239 CCATTTCCGC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 20 0.91
12 2 0.09
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTCTTATTTT
Found at i:7822115 original size:10 final size:9
Alignment explanation
Indices: 7822098--7822126 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
7822088 TATAAAAAAA
7822098 TATTTTTTT
1 TATTTTTTT
7822107 TATTTTTTT
1 TATTTTTTT
7822116 TATTTTTTT
1 TATTTTTTT
7822125 TA
1 TA
7822127 ACTATTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (9 bp):
TATTTTTTT
Found at i:7826872 original size:39 final size:39
Alignment explanation
Indices: 7826813--7826956 Score: 153
Period size: 39 Copynumber: 3.5 Consensus size: 39
7826803 GCCTTAATAC
* *
7826813 GACAGCTGAGAGCTTTTAACTCTCGCTAACTGTTTGGTG
1 GACAACTGAGAGCTTTTAACTCTCGCTAACTGTTTGGAG
* *
7826852 GACAACTGAGAGCTTTTAACTCTCGTTCTCACTATTTGTTTAGAG
1 GACAACTGAGAGCTTTTAACTCTCG--CT-A--A-CTGTTTGGAG
* *
7826897 GACAACTGAGAGCTCTTAACTCTCGTTAACTGTTTGGAG
1 GACAACTGAGAGCTTTTAACTCTCGCTAACTGTTTGGAG
* * *
7826936 GACAGCTGTGAGCTTTGAACT
1 GACAACTGAGAGCTTTTAACT
7826957 TACCGCACCA
Statistics
Matches: 87, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
39 49 0.56
40 1 0.01
41 2 0.02
42 2 0.02
43 1 0.01
44 1 0.01
45 31 0.36
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (39 bp):
GACAACTGAGAGCTTTTAACTCTCGCTAACTGTTTGGAG
Found at i:7828121 original size:13 final size:13
Alignment explanation
Indices: 7828103--7828129 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7828093 TCTCCTCCTC
7828103 TGAGTTAATTATT
1 TGAGTTAATTATT
7828116 TGAGTTAATTATT
1 TGAGTTAATTATT
7828129 T
1 T
7828130 ATAAATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (13 bp):
TGAGTTAATTATT
Found at i:7835270 original size:13 final size:13
Alignment explanation
Indices: 7835252--7835276 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7835242 ATGAACATTT
7835252 TATTTCTCAAAAG
1 TATTTCTCAAAAG
7835265 TATTTCTCAAAA
1 TATTTCTCAAAA
7835277 TTACTTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (13 bp):
TATTTCTCAAAAG
Found at i:7836909 original size:25 final size:25
Alignment explanation
Indices: 7836880--7836951 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 25
7836870 CTCTCTCTCA
*
7836880 AGCCATATAACGGGAAACTCATGT-G
1 AGCCATATAACGGGAAGCTCAT-TCG
* * *
7836905 AGCCATGTTACGGGAAGCTTATTCG
1 AGCCATATAACGGGAAGCTCATTCG
**
7836930 AGCTGTATAACGGGAAGCTCAT
1 AGCCATATAACGGGAAGCTCAT
7836952 AAGAGTCATA
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (25 bp):
AGCCATATAACGGGAAGCTCATTCG
Found at i:7842118 original size:38 final size:37
Alignment explanation
Indices: 7842077--7842149 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 37
7842067 GACATTTAAA
7842077 AAAAAGTCAA-GTAGATTTTTTAATAAAAATATTGACT
1 AAAAAGTCAATGTA-ATTTTTTAATAAAAATATTGACT
*
7842114 AAAAAGTCAATTTTAATTTTTTAATAAAAATATTGA
1 AAAAAGTCAA-TGTAATTTTTTAATAAAAATATTGA
7842150 TTTTCAATCA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
37 10 0.30
38 21 0.64
39 2 0.06
ACGTcount: A:0.49, C:0.04, G:0.08, T:0.38
Consensus pattern (37 bp):
AAAAAGTCAATGTAATTTTTTAATAAAAATATTGACT
Found at i:7843634 original size:15 final size:15
Alignment explanation
Indices: 7843599--7843631 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7843589 TGATATAAAA
7843599 TAAATATTTCATATT
1 TAAATATTTCATATT
*
7843614 TAAATATTT-TTATT
1 TAAATATTTCATATT
7843628 TAAA
1 TAAA
7843632 ATAGGAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (15 bp):
TAAATATTTCATATT
Found at i:7846339 original size:32 final size:32
Alignment explanation
Indices: 7846279--7846341 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
7846269 GACTGTCATT
* *
7846279 ATAATTATTTTTTATCCAACAAGTTAAGGTTC
1 ATAATTAATTTTTATCCAACAAGATAAGGTTC
7846311 ATAATTAATTTTTATCCAA-ACAGATAAGGTT
1 ATAATTAATTTTTATCCAACA-AGATAAGGTT
7846342 AGGTTAAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 1 0.04
32 27 0.96
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.41
Consensus pattern (32 bp):
ATAATTAATTTTTATCCAACAAGATAAGGTTC
Found at i:7854284 original size:13 final size:14
Alignment explanation
Indices: 7854265--7854316 Score: 54
Period size: 13 Copynumber: 3.6 Consensus size: 14
7854255 TAGTTTTGAA
7854265 AAAAAAAAGAATTC-
1 AAAAAAAA-AATTCG
7854279 AAAAAAAAAATTCG
1 AAAAAAAAAATTCG
7854293 AAAAGAAAAAAAATT-G
1 --AA-AAAAAAAATTCG
7854309 AAAAAAAA
1 AAAAAAAA
7854317 TTGTATACGG
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
13 11 0.32
14 10 0.29
16 3 0.09
17 10 0.29
ACGTcount: A:0.77, C:0.04, G:0.08, T:0.12
Consensus pattern (14 bp):
AAAAAAAAAATTCG
Found at i:7854301 original size:17 final size:15
Alignment explanation
Indices: 7854260--7854316 Score: 64
Period size: 17 Copynumber: 3.7 Consensus size: 15
7854250 AATTGTAGTT
7854260 TTGAAAAAAAAAAGAA
1 TTGAAAAAAAAAA-AA
*
7854276 TT--CAAAAAAAAAA
1 TTGAAAAAAAAAAAA
7854289 TTCGAAAAGAAAAAAAA
1 TT-GAAAA-AAAAAAAA
7854306 TTGAAAAAAAA
1 TTGAAAAAAAA
7854317 TTGTATACGG
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
13 4 0.11
14 8 0.23
15 4 0.11
16 9 0.26
17 10 0.29
ACGTcount: A:0.74, C:0.04, G:0.09, T:0.14
Consensus pattern (15 bp):
TTGAAAAAAAAAAAA
Found at i:7856583 original size:21 final size:19
Alignment explanation
Indices: 7856534--7856594 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 19
7856524 GAAAAGAAGA
7856534 AAAACAAAAAGATGAGTGAT
1 AAAA-AAAAAGATGAGTGAT
7856554 -AAAAAAAAGA-GAGTGATT
1 AAAAAAAAAGATGAGTGA-T
7856572 CAAAAGAAAAAGAAATGAGTGAT
1 -AAAA-AAAAAG--ATGAGTGAT
7856595 GAGATTGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
17 6 0.18
18 8 0.24
19 3 0.09
20 3 0.09
21 6 0.18
23 2 0.06
24 6 0.18
ACGTcount: A:0.61, C:0.03, G:0.21, T:0.15
Consensus pattern (19 bp):
AAAAAAAAAGATGAGTGAT
Found at i:7869678 original size:3 final size:3
Alignment explanation
Indices: 7869672--7869699 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7869662 AGAAAAAAAT
7869672 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
7869700 GTGATTGTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:7881445 original size:21 final size:20
Alignment explanation
Indices: 7881401--7881445 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
7881391 CATTTAATTT
* *
7881401 TTTATTTTTTATTAAATGAA
1 TTTATTTTTTATCAAATCAA
*
7881421 TTTATATTTTTATCAAATCAC
1 TTTAT-TTTTTATCAAATCAA
7881442 TTTA
1 TTTA
7881446 AAATAAATAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (20 bp):
TTTATTTTTTATCAAATCAA
Found at i:7887130 original size:17 final size:17
Alignment explanation
Indices: 7887108--7887141 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7887098 ATCCACTAAT
*
7887108 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
7887125 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
7887142 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:7891759 original size:17 final size:17
Alignment explanation
Indices: 7891737--7891770 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7891727 ATCCACTAAT
*
7891737 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
7891754 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
7891771 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:7895119 original size:32 final size:31
Alignment explanation
Indices: 7895070--7895129 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
7895060 AGCCCGCCCG
*
7895070 TATTATTTTTTATTTTAAAAATATTTATATTA
1 TATTATTTTATATTTTAAAAAT-TTTATATTA
*
7895102 TATTATTTTA-ATATTTAATAATTTTATA
1 TATTATTTTATAT-TTTAAAAATTTTATA
7895130 CATATTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
31 8 0.32
32 17 0.68
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (31 bp):
TATTATTTTATATTTTAAAAATTTTATATTA
Found at i:7907837 original size:24 final size:25
Alignment explanation
Indices: 7907792--7907842 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
7907782 ATTAAGTCCG
* **
7907792 AATTTTCCTATGTAAAGTTTGTTTT
1 AATTTTCCTATCTAAAAATTGTTTT
7907817 AATTTTCCTA-CTAAAAATTGTTTT
1 AATTTTCCTATCTAAAAATTGTTTT
7907841 AA
1 AA
7907843 ATATTAATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.51
Consensus pattern (25 bp):
AATTTTCCTATCTAAAAATTGTTTT
Found at i:7913288 original size:130 final size:130
Alignment explanation
Indices: 7913123--7913723 Score: 401
Period size: 130 Copynumber: 4.6 Consensus size: 130
7913113 TCAAATATTA
* * * *
7913123 AAAGAATTTAAATTTGATTGCATAAGTTTGAGGCAACCTGAATCAAGTGATTAATGAATTTACTA
1 AAAG-ATTAAAATTTGATTGCGTAAGTTTGAGGCAACCTGAATCGAGTGATTAATAAATTTACTA
** * * *
7913188 AATGAGTGATTACACGTTCATACCAAATTC-TAAAATAATTTGAATACTTTTTCAATTAAAGTAA
65 AAAAAGTGACTACACGTTCATA-CAAAGTCTTAAAAGAATTTGAATACTTTTTCAATTAAAGTAA
7913252 CCT
129 -CT
* ** * *
7913255 AAAG-TTATAATTTGATTGCGTAAGTTTGAGGCAACCCCAAACGAGTGATTGATAAATTTACTAA
1 AAAGATTAAAATTTGATTGCGTAAGTTTGAGGCAACCTGAATCGAGTGATTAATAAATTTACTAA
** * ** * * *
7913319 AAAAGTGACTACGTGTTGATATTAAGTCTTAAGAGAATTTGAATATTTTTTCAATTAGAGTAACT
66 AAAAGTGACTACACGTTCATACAAAGTCTTAAAAGAATTTGAATACTTTTTCAATTAAAGTAACT
** * *
7913384 TGAGATTAAAATTTGGTTGCGTAAGTTTGAGACAACCTGAATCGAGTGATGATAGATAAATTTAC
1 AAAGATTAAAATTTGATTGCGTAAGTTTGAGGCAACCTGAATCGAGTGAT--TA-ATAAATTTAC
* * *** * * * * * * *
7913449 TAAAAGACTGACTATGTGTTCATATTAAA-TCCTAAGAGGATTTAAATACTCTTTT-AGTTAGAG
63 TAAAAAAGTGACTACACGTTCATA-CAAAGTCTTAAAAGAATTTGAATACT-TTTTCAATTAAAG
7913512 TAATCT
126 TAA-CT
** * * ** * * ** *
7913518 ATCG-TTAAATTTTGATTGCGTAAATTTGAGATAACCTGAATTGAGGGATCGATAAATTTATTAA
1 AAAGATTAAAATTTGATTGCGTAAGTTTGAGGCAACCTGAATCGAGTGATTAATAAATTTACTAA
** ** * * * * * *
7913582 AAAAAAGACTACGTGTTCATATTAAA-TCCTAAGAGAATTTGAATATTTTTTCAATTGAAGTGAC
66 AAAAGTGACTACACGTTCATA-CAAAGTCTTAAAAGAATTTGAATACTTTTTCAATTAAAGTAAC
7913646 -
130 T
* * * * ** * * * *
7913646 ATAAGGTTAAAACTAGGTTATGTAAATTTGAGGCAACCTGAATCAAGGGATTGATAAGA-TTACT
1 A-AAGATTAAAATTTGATTGCGTAAGTTTGAGGCAACCTGAATCGAGTGATTAATAA-ATTTACT
*
7913710 -AAAAGGTGACTACA
64 AAAAAAGTGACTACA
7913724 TTTATATCAA
Statistics
Matches: 375, Mismatches: 82, Indels: 27
0.77 0.17 0.06
Matches are distributed among these distances:
128 1 0.00
129 24 0.06
130 238 0.63
131 1 0.00
132 5 0.01
133 96 0.26
134 10 0.03
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.34
Consensus pattern (130 bp):
AAAGATTAAAATTTGATTGCGTAAGTTTGAGGCAACCTGAATCGAGTGATTAATAAATTTACTAA
AAAAGTGACTACACGTTCATACAAAGTCTTAAAAGAATTTGAATACTTTTTCAATTAAAGTAACT
Found at i:7913510 original size:133 final size:130
Alignment explanation
Indices: 7913132--7913637 Score: 518
Period size: 130 Copynumber: 3.9 Consensus size: 130
7913122 AAAAGAATTT
* * * * **
7913132 AAATTTGATTGCATAAGTTTGAGGCAACCTGAATCAAGTGATTA-ATGAATTTACTAAATGAGTG
1 AAATTTGATTGCGTAAGTTTGAGACAACCTGAATCGAGTGATTAGATAAATTTACTAAAAAAGTG
* ** ** * * * * * *
7913196 ATTACACGTTCATACCAAATTCTAAAATAATTTGAATACTTTTTCAATTAAAGTAACCTAAAGTT
66 ACTACGTGTTCATATTAAATCCTAAGAGAATTTGAATACTTTTTCAATTAGAGTAACTTAGA-TT
7913261 A
130 A
* * ** *
7913262 TAATTTGATTGCGTAAGTTTGAGGCAACCCCAAACGAGTGATT-GATAAATTTACTAAAAAAGTG
1 AAATTTGATTGCGTAAGTTTGAGACAACCTGAATCGAGTGATTAGATAAATTTACTAAAAAAGTG
* * * *
7913326 ACTACGTGTTGATATTAAGTCTTAAGAGAATTTGAATATTTTTTCAATTAGAGTAACTTGAGATT
66 ACTACGTGTTCATATTAAATCCTAAGAGAATTTGAATACTTTTTCAATTAGAGTAACTT-AGATT
7913391 A
130 A
* * *
7913392 AAATTTGGTTGCGTAAGTTTGAGACAACCTGAATCGAGTGATGATAGATAAATTTACTAAAAGAC
1 AAATTTGATTGCGTAAGTTTGAGACAACCTGAATCGAGTGAT--TAGATAAATTTACTAAAAAAG
* * * * *
7913457 TGACTATGTGTTCATATTAAATCCTAAGAGGATTTAAATACTCTTTT-AGTTAGAGTAATCTATC
64 TGACTACGTGTTCATATTAAATCCTAAGAGAATTTGAATACT-TTTTCAATTAGAGTAA-CT-TA
7913521 G-TTA
126 GATTA
* * * * * * * **
7913525 AATTTTGATTGCGTAAATTTGAGATAACCTGAATTGAGGGA-TCGATAAATTTATTAAAAAAAAG
1 AAATTTGATTGCGTAAGTTTGAGACAACCTGAATCGAGTGATTAGATAAATTTACTAAAAAAGTG
*
7913589 ACTACGTGTTCATATTAAATCCTAAGAGAATTTGAATATTTTTTCAATT
66 ACTACGTGTTCATATTAAATCCTAAGAGAATTTGAATACTTTTTCAATT
7913638 GAAGTGACAT
Statistics
Matches: 310, Mismatches: 57, Indels: 18
0.81 0.15 0.05
Matches are distributed among these distances:
129 4 0.01
130 195 0.63
131 2 0.01
132 1 0.00
133 100 0.32
134 7 0.02
135 1 0.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (130 bp):
AAATTTGATTGCGTAAGTTTGAGACAACCTGAATCGAGTGATTAGATAAATTTACTAAAAAAGTG
ACTACGTGTTCATATTAAATCCTAAGAGAATTTGAATACTTTTTCAATTAGAGTAACTTAGATTA
Found at i:7913596 original size:263 final size:260
Alignment explanation
Indices: 7913132--7913637 Score: 611
Period size: 263 Copynumber: 1.9 Consensus size: 260
7913122 AAAAGAATTT
* * * *
7913132 AAATTTGATTGCATAAGTTTGAGGCAACCTGAATCAAGTGATTAATGAATTTACTAAATGAGTGA
1 AAATTTGATTGCATAAGTTTGAGACAACCTGAATCAAGTGATTAATAAATTTACTAAAAGACTGA
* * * *
7913197 TTACACGTTCATACCAAATTCTAAAATAATTTGAATACTTTTTCAATTAAAGTAACCTAAAGTTA
66 CTACACGTTCATACCAAATCCTAAAAGAATTTAAATACTTTTTCAATTAAAGTAACCTAAAGTTA
* * * * **
7913262 TAATTTGATTGCGTAAGTTTGAGGCAACCCCAAACGAGTGATTGATAAATTTACTAAAAAAGTGA
131 TAATTTGATTGCGTAAATTTGAGACAACCCCAAACGAGGGATCGATAAATTTACTAAAAAAAAGA
* * *
7913327 CTACGTGTTGATATTAAGTCTTAAGAGAATTTGAATATTTTTTCAATTAGAGTAACTTGAGATTA
196 CTACGTGTTCATATTAAATCCTAAGAGAATTTGAATATTTTTTCAATTAGAGTAACTTGAGATTA
* * *
7913392 AAATTTGGTTGCGTAAGTTTGAGACAACCTGAATCGAGTGATGATAGATAAATTTACTAAAAGAC
1 AAATTTGATTGCATAAGTTTGAGACAACCTGAATCAAGTGAT--TA-ATAAATTTACTAAAAGAC
*** ** * * * * * **
7913457 TGACTATGTGTTCATATTAAATCCTAAGAGGATTTAAATACTCTTTT-AGTTAGAGTAATCTATC
63 TGACTACACGTTCATACCAAATCCTAAAAGAATTTAAATACT-TTTTCAATTAAAGTAACCTAAA
* ** ** *
7913521 GTTA-AATTTTGATTGCGTAAATTTGAGATAACCTGAATTGAGGGATCGATAAATTTATTAAAAA
127 GTTATAA-TTTGATTGCGTAAATTTGAGACAACCCCAAACGAGGGATCGATAAATTTACTAAAAA
7913585 AAAGACTACGTGTTCATATTAAATCCTAAGAGAATTTGAATATTTTTTCAATT
191 AAAGACTACGTGTTCATATTAAATCCTAAGAGAATTTGAATATTTTTTCAATT
7913638 GAAGTGACAT
Statistics
Matches: 203, Mismatches: 38, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
260 38 0.19
262 4 0.02
263 157 0.77
264 4 0.02
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (260 bp):
AAATTTGATTGCATAAGTTTGAGACAACCTGAATCAAGTGATTAATAAATTTACTAAAAGACTGA
CTACACGTTCATACCAAATCCTAAAAGAATTTAAATACTTTTTCAATTAAAGTAACCTAAAGTTA
TAATTTGATTGCGTAAATTTGAGACAACCCCAAACGAGGGATCGATAAATTTACTAAAAAAAAGA
CTACGTGTTCATATTAAATCCTAAGAGAATTTGAATATTTTTTCAATTAGAGTAACTTGAGATTA
Found at i:7915146 original size:9 final size:9
Alignment explanation
Indices: 7915132--7915167 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
7915122 TGATTCGGTG
7915132 CAGCAGCAA
1 CAGCAGCAA
7915141 CAGCAGCAA
1 CAGCAGCAA
* *
7915150 CAACAGCAG
1 CAGCAGCAA
7915159 CAGCAGCAA
1 CAGCAGCAA
7915168 ATAGCGTCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.44, C:0.33, G:0.22, T:0.00
Consensus pattern (9 bp):
CAGCAGCAA
Found at i:7915148 original size:12 final size:12
Alignment explanation
Indices: 7915131--7915163 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
7915121 ATGATTCGGT
7915131 GCAGCAGCAACA
1 GCAGCAGCAACA
*
7915143 GCAGCAACAACA
1 GCAGCAGCAACA
7915155 GCAGCAGCA
1 GCAGCAGCA
7915164 GCAAATAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.42, C:0.33, G:0.24, T:0.00
Consensus pattern (12 bp):
GCAGCAGCAACA
Found at i:7921170 original size:34 final size:34
Alignment explanation
Indices: 7921129--7921195 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
7921119 TAATAATCAC
* *
7921129 TTATCATACTGCTGTTTGTAATGATGTTATTTCG
1 TTATCATACTGCTATATGTAATGATGTTATTTCG
*
7921163 TTATCATACTGCTATATGTAATGGTGTTATTTC
1 TTATCATACTGCTATATGTAATGATGTTATTTC
7921196 ATTGGCTGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.22, C:0.12, G:0.16, T:0.49
Consensus pattern (34 bp):
TTATCATACTGCTATATGTAATGATGTTATTTCG
Found at i:7933198 original size:111 final size:112
Alignment explanation
Indices: 7933077--7933279 Score: 304
Period size: 111 Copynumber: 1.8 Consensus size: 112
7933067 ACTTATCAAC
* *
7933077 TTTTTATTTATTAGTAAAAGAAC-TTTCTA-TTTAAAAAATTAAATCTTGAAACAAATTCAAAAA
1 TTTTTATTTATTAGTAAAA-AACATTT-TACTTAAAAAAATTAAATCATGAAACAAATTCAAAAA
*
7933140 TTAAAATTGGTCTCAAAATCTATTAAAAACAAATAGAATAAAAAGTTGA
64 TTAAAATTAGTCTCAAAATCTATTAAAAACAAATAGAATAAAAAGTTGA
* * **
7933189 TTTTT-TTTATTAGTAAAATACATTTTACTTAAAAAAATTAAATCATGAAACAAGTTGGAAAATT
1 TTTTTATTTATTAGTAAAAAACATTTTACTTAAAAAAATTAAATCATGAAACAAATTCAAAAATT
7933253 AAAATTAGTCTCAAAATCTATTAAAAA
66 AAAATTAGTCTCAAAATCTATTAAAAA
7933280 AAAGAAACTT
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
110 4 0.05
111 73 0.89
112 5 0.06
ACGTcount: A:0.49, C:0.08, G:0.07, T:0.36
Consensus pattern (112 bp):
TTTTTATTTATTAGTAAAAAACATTTTACTTAAAAAAATTAAATCATGAAACAAATTCAAAAATT
AAAATTAGTCTCAAAATCTATTAAAAACAAATAGAATAAAAAGTTGA
Found at i:7937903 original size:228 final size:230
Alignment explanation
Indices: 7937484--7937942 Score: 631
Period size: 227 Copynumber: 2.0 Consensus size: 230
7937474 GATATAAATA
*
7937484 CTTAACAAATACATTCAAATAGTCATTTGAAAATATGATATTCAACATTGAATACGTAGAATATG
1 CTTAACAAATACATTCAAATAGTCATTTAAAAATATGATATTCAACATTGAATACGTAGAATATG
* * * * * * * *
7937549 AGAAAGTATGTGATGTTTTTATGAGGGGAGTAAATATGTGTTGTATTCTTTTTCCCTTAACTGAT
66 AGAAAGTATGTGATATTTTCATAAGGGGAGTAAATATGCGCTATACTCTTTTTCCCTTAACCGAT
* * * *
7937614 GTTTTGTTCTATTAAATTTTCTAGGTAAGATTTTTAAAGAGGTAACATATTATATATATTAT-G-
131 GTTTTGTTCCATTAAATTTTCTAGATAAGATTTTTAAAGAAGCAACATATTATATATATTATAGA
7937677 T-GAAATCTTTTTCCTTCACTAGGATTTTTTTTCC
196 TCGAAATCTTTTTCCTTCACTAGGATTTTTTTTCC
* * *
7937711 CTTAACAAATACATTCAAATAGTCATTTAAAAATCTGGTATTCAAGATTGAATACGTAGAATATG
1 CTTAACAAATACATTCAAATAGTCATTTAAAAATATGATATTCAACATTGAATACGTAGAATATG
*
7937776 AGAAAGTATGTGATATTTTCATAAGGGGGAGTAAATATGCGCTATGCTCTTTTTCCCTTAACCGA
66 AGAAAGTATGTGATATTTTCATAA-GGGGAGTAAATATGCGCTATACTCTTTTTCCCTTAACCGA
** *
7937841 TGTTTT-TTCCCATTAGGTTTTCCT-GATAAGATTTTTAATGAAGCAACATATTATATATATTAT
130 TGTTTTGTT-CCATTAAATTTT-CTAGATAAGATTTTTAAAGAAGCAACATATTATATATATTAT
* *
7937904 AGATATGCGTACTCTTTTTCCTTCACTAGGATTTTTTTT
193 AG--AT-CGAAATCTTTTTCCTTCACTAGGATTTTTTTT
7937943 TCCCACATGA
Statistics
Matches: 201, Mismatches: 22, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
227 84 0.42
228 84 0.42
229 3 0.01
232 1 0.00
234 29 0.14
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (230 bp):
CTTAACAAATACATTCAAATAGTCATTTAAAAATATGATATTCAACATTGAATACGTAGAATATG
AGAAAGTATGTGATATTTTCATAAGGGGAGTAAATATGCGCTATACTCTTTTTCCCTTAACCGAT
GTTTTGTTCCATTAAATTTTCTAGATAAGATTTTTAAAGAAGCAACATATTATATATATTATAGA
TCGAAATCTTTTTCCTTCACTAGGATTTTTTTTCC
Found at i:7943542 original size:21 final size:22
Alignment explanation
Indices: 7943500--7943543 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
7943490 ATCTTCAAAG
*
7943500 TAATATATATTTATATAAATTT
1 TAATATATATTTACATAAATTT
* *
7943522 TAATAT-TTTTTACATAGATTT
1 TAATATATATTTACATAAATTT
7943543 T
1 T
7943544 CACTTCTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (22 bp):
TAATATATATTTACATAAATTT
Found at i:7944173 original size:15 final size:15
Alignment explanation
Indices: 7944153--7944182 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7944143 CAATAAATAA
7944153 TCATAAATTTGAAAT
1 TCATAAATTTGAAAT
*
7944168 TCATAATTTTGAAAT
1 TCATAAATTTGAAAT
7944183 ATAAAATCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (15 bp):
TCATAAATTTGAAAT
Found at i:7944648 original size:20 final size:20
Alignment explanation
Indices: 7944623--7944661 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7944613 ACCCTAAACC
7944623 CTTTAATTGATACTAGTTGG
1 CTTTAATTGATACTAGTTGG
*
7944643 CTTTAATTTATACTAGTTG
1 CTTTAATTGATACTAGTTG
7944662 TTATGATGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.10, G:0.15, T:0.49
Consensus pattern (20 bp):
CTTTAATTGATACTAGTTGG
Found at i:7944849 original size:20 final size:20
Alignment explanation
Indices: 7944824--7944864 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
7944814 CAGTAAAATA
7944824 TTTTTT-GAGAAATGATTTAT
1 TTTTTTGGA-AAATGATTTAT
7944844 TTTTTTGGAAAATGATTTAT
1 TTTTTTGGAAAATGATTTAT
7944864 T
1 T
7944865 GGAAAATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 18 0.90
21 2 0.10
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.56
Consensus pattern (20 bp):
TTTTTTGGAAAATGATTTAT
Found at i:7946227 original size:20 final size:17
Alignment explanation
Indices: 7946187--7946229 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
7946177 TTCATCAAGT
*
7946187 TTAATATTAAATTTAAT
1 TTAATATTAAATTTAAA
7946204 TTAATATTAAATCTATTAAA
1 TTAATATTAAA--T-TTAAA
7946224 TTAATA
1 TTAATA
7946230 GAATAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 11 0.50
19 1 0.05
20 10 0.45
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAATATTAAATTTAAA
Found at i:7981790 original size:20 final size:22
Alignment explanation
Indices: 7981762--7981805 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 22
7981752 TATATAATAT
*
7981762 ATATATTTTA-AAAGTT-TAAA
1 ATATATTTTATAAAATTCTAAA
*
7981782 ATATTTTTTATAAAATTCTAAA
1 ATATATTTTATAAAATTCTAAA
7981804 AT
1 AT
7981806 GTATAATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 9 0.45
21 5 0.25
22 6 0.30
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
ATATATTTTATAAAATTCTAAA
Found at i:7994099 original size:23 final size:23
Alignment explanation
Indices: 7994069--7994117 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
7994059 TTTTATTGAT
7994069 TATATATATTTTCTAAATTTTTA
1 TATATATATTTTCTAAATTTTTA
7994092 TATATATATTTTCTAAATTTTTA
1 TATATATATTTTCTAAATTTTTA
7994115 TAT
1 TAT
7994118 TTTTAATGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (23 bp):
TATATATATTTTCTAAATTTTTA
Found at i:8002685 original size:27 final size:27
Alignment explanation
Indices: 8002613--8002685 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
8002603 GTCGAGTGGC
*
8002613 GCCTCATAGGGAGGCACCATTAAAAGT
1 GCCTCATAGGGAGGCGCCATTAAAAGT
*
8002640 GCCTCATAAGGAGGCGCCATTAAAAGT
1 GCCTCATAGGGAGGCGCCATTAAAAGT
*
8002667 GCCTCATAGGGAGGTGCCA
1 GCCTCATAGGGAGGCGCCA
8002686 ATGGGTAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.30, C:0.23, G:0.29, T:0.18
Consensus pattern (27 bp):
GCCTCATAGGGAGGCGCCATTAAAAGT
Found at i:8002739 original size:19 final size:19
Alignment explanation
Indices: 8002690--8003349 Score: 182
Period size: 19 Copynumber: 32.3 Consensus size: 19
8002680 GTGCCAATGG
*
8002690 GTAATTTTGTATGTATATT
1 GTAATTTTGTATGAATATT
8002709 GTAACTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
*
8002730 ATAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
*
8002749 GTAATTATTTTAT-AATTAATTTT
1 GTAATT-TTGTATGAA-T-A--TT
* * *
8002772 GT-ATTTATAGTTTTGGAT-TA
1 GTAATTT-T-G-TATGAATATT
*
8002792 GT-ATTTTGTATGAATAGT
1 GTAATTTTGTATGAATATT
8002810 GTAATTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
*
8002831 GTAATTATT-T-T--ATAAT
1 GTAATT-TTGTATGAATATT
* *
8002847 -TAATTTTGTATTTATAGTTTTT
1 GTAATTTTGTA-TGA-A--TATT
*
8002869 GATTAGTATTTTGTATGAATGTT
1 G--TA--ATTTTGTATGAATATT
8002892 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
*
8002911 GTAATTATTTTAT-AATTAATT
1 GTAATT-TTGTATGAA-T-ATT
* * * *
8002932 TTATATTTATAGTTTTGGAT-TA
1 GTA-ATTT-T-G-TATGAATATT
*
8002954 GT-ATTTTGTATGAATAGT
1 GTAATTTTGTATGAATATT
8002972 GTAATTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
*
8002993 GTAATTTTTTATGAATATT
1 GTAATTTTGTATGAATATT
*
8003012 GTAATTATTTTAT-AATTAATT
1 GTAATT-TTGTATGAA-T-ATT
* * *
8003033 TTATATTTATAGTTTTTG-AT-TA
1 GTA-ATTT-T-G--TATGAATATT
* *
8003055 GT-ATTTTGTATGAATGTC
1 GTAATTTTGTATGAATATT
8003073 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
* *
8003092 TTAATTATT-T-T--ATAAT
1 GTAATT-TTGTATGAATATT
* *
8003108 -TAATTTTGTATTTATAGTTTTT
1 GTAATTTTGTA-TGA-A--TATT
8003130 GATTAGTATTTTGTATGAATATT
1 G--TA--ATTTTGTATGAATATT
* *
8003153 ATAATGTTGTATGAATATT
1 GTAATTTTGTATGAATATT
* *
8003172 ATAATTATTTTAT-AATTAATTTT
1 GTAATT-TTGTATGAA-T-A--TT
* * *
8003195 GT-ATTTATAGTTTTGGAT-TA
1 GTAATTT-T-G-TATGAATATT
8003215 GT-ATTTTGTATGAATATTGTAATTTT
1 GTAATTTTGTATG-A-A---T-A--TT
8003241 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
8003260 GTAATATTGTTTGTATGAATATT
1 GT-A-A-T-TTTGTATGAATATT
*
8003283 GTAATTTTGTATGGATATT
1 GTAATTTTGTATGAATATT
8003302 GTAATATTGTTTGTATGAATATT
1 GT-A-A-T-TTTGTATGAATATT
8003325 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
8003344 GTAATT
1 GTAATT
8003350 ATTTTATAAT
Statistics
Matches: 486, Mismatches: 61, Indels: 188
0.66 0.08 0.26
Matches are distributed among these distances:
14 4 0.01
15 12 0.02
16 11 0.02
17 17 0.03
18 13 0.03
19 162 0.33
20 57 0.12
21 78 0.16
22 30 0.06
23 45 0.09
24 10 0.02
25 13 0.03
26 8 0.02
27 26 0.05
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.56
Consensus pattern (19 bp):
GTAATTTTGTATGAATATT
Found at i:8002953 original size:80 final size:81
Alignment explanation
Indices: 8002715--8003004 Score: 489
Period size: 82 Copynumber: 3.6 Consensus size: 81
8002705 TATTGTAACT
* *
8002715 TTTTGTATGAATATTATAA-TTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTA
1 TTTTGTATGAATAGTGTAATTTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTA
8002779 TAGTTTTGGATTAGTA
66 TAGTTTTGGATTAGTA
8002795 TTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTT
1 TTTTGTATGAATAGTGTAA-TTTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTT
*
8002860 ATAGTTTTTGATTAGTA
65 ATAGTTTTGGATTAGTA
*
8002877 TTTTGTATGAAT-GTTGTAA-TTTTGTATGAATATTGTAATTATTTTATAATTAATTTTATATTT
1 TTTTGTATGAATAG-TGTAATTTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTT
8002940 ATAGTTTTGGATTAGTA
65 ATAGTTTTGGATTAGTA
8002957 TTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTAATT-TTTTAT
1 TTTTGTATGAATAGTGTAA-TTTTTGTATGAATATTGTAATTATTTTAT
8003005 GAATATTGTA
Statistics
Matches: 199, Mismatches: 5, Indels: 11
0.93 0.02 0.05
Matches are distributed among these distances:
80 93 0.47
81 8 0.04
82 98 0.49
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (81 bp):
TTTTGTATGAATAGTGTAATTTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTA
TAGTTTTGGATTAGTA
Found at i:8002982 original size:101 final size:99
Alignment explanation
Indices: 8002876--8003097 Score: 374
Period size: 101 Copynumber: 2.2 Consensus size: 99
8002866 TTTGATTAGT
*
8002876 ATTTTGTATGAATGTTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTATATTTA
1 ATTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTATATTTA
8002941 TAGTTTTGGATTAGTATTTTGTATGAATAGT-GTA
66 TAGTTTTGGATTAGTATTTTGTATGAAT-GTCGTA
*
8002975 ATTTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTATATT
1 A--TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTATATT
*
8003040 TATAGTTTTTGATTAGTATTTTGTATGAATGTCGTA
64 TATAGTTTTGGATTAGTATTTTGTATGAATGTCGTA
*
8003076 ATTTTGTATGAATATTTTAATT
1 ATTTTGTATGAATATTGTAATT
8003098 ATTTTATAAT
Statistics
Matches: 116, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
99 21 0.18
100 2 0.02
101 93 0.80
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.56
Consensus pattern (99 bp):
ATTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTATATTTA
TAGTTTTGGATTAGTATTTTGTATGAATGTCGTA
Found at i:8003020 original size:181 final size:179
Alignment explanation
Indices: 8002794--8003184 Score: 647
Period size: 181 Copynumber: 2.2 Consensus size: 179
8002784 TTGGATTAGT
* *
8002794 ATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATT
1 ATTTTGTATGAATATTGTAA-TTTTT-TATGAATATTGTAATTATTTTATAATTAATTTTATATT
*
8002859 TATAGTTTTTGATTAGTATTTTGTATGAATGTTGTAATTTTGTATGAATATTGTAATTATTTTAT
64 TATAGTTTTTGATTAGTATTTTGTATGAATGTCGTAATTTTGTATGAATATTGTAATTATTTTAT
*
8002924 AATTAATTTTATATTTATAGTTTTGGATTAGTATTTTGTATGAATAGTGTA
129 AATTAATTTTATATTTATAGTTTTGGATTAGTATTTTGTATGAATAGTATA
8002975 ATTTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTATATT
1 A--TTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTATATT
*
8003040 TATAGTTTTTGATTAGTATTTTGTATGAATGTCGTAATTTTGTATGAATATTTTAATTATTTTAT
64 TATAGTTTTTGATTAGTATTTTGTATGAATGTCGTAATTTTGTATGAATATTGTAATTATTTTAT
* * *
8003105 AATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTATA
129 AATTAATTTTATATTTATAGTTTTGGATTAGTATTTTGTATGAATAGTATA
* *
8003156 ATGTTGTATGAATATTATAATTATTTTAT
1 ATTTTGTATGAATATTGTAATT-TTTTAT
8003185 AATTAATTTT
Statistics
Matches: 197, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
179 19 0.10
180 6 0.03
181 149 0.76
182 5 0.03
183 18 0.09
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (179 bp):
ATTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTATATTTA
TAGTTTTTGATTAGTATTTTGTATGAATGTCGTAATTTTGTATGAATATTGTAATTATTTTATAA
TTAATTTTATATTTATAGTTTTGGATTAGTATTTTGTATGAATAGTATA
Found at i:8003080 original size:80 final size:80
Alignment explanation
Indices: 8002978--8003243 Score: 451
Period size: 80 Copynumber: 3.3 Consensus size: 80
8002968 TAGTGTAATT
* * *
8002978 TTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTATATTTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTATAATTATTTTATAATTAATTTTGTATTTAT
8003043 AGTTTTTGATTAGTA
66 AGTTTTTGATTAGTA
* * *
8003058 TTTTGTATGAATGTCGTAATTTTGTATGAATATTTTAATTATTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTATAATTATTTTATAATTAATTTTGTATTTAT
8003123 AGTTTTTGATTAGTA
66 AGTTTTTGATTAGTA
* *
8003138 TTTTGTATGAATATTATAATGTTGTATGAATATTATAATTATTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTATAATTATTTTATAATTAATTTTGTATTTAT
*
8003203 AGTTTTGGATTAGTA
66 AGTTTTTGATTAGTA
8003218 TTTTGTATGAATATTGTAATTTTGTA
1 TTTTGTATGAATATTGTAATTTTGTA
8003244 ATTTTGTATG
Statistics
Matches: 173, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 173 1.00
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.57
Consensus pattern (80 bp):
TTTTGTATGAATATTGTAATTTTGTATGAATATTATAATTATTTTATAATTAATTTTGTATTTAT
AGTTTTTGATTAGTA
Found at i:8003194 original size:261 final size:262
Alignment explanation
Indices: 8002693--8003288 Score: 953
Period size: 261 Copynumber: 2.2 Consensus size: 262
8002683 CCAATGGGTA
* * * *
8002693 ATTTTGTATGTATATTGTAACTTTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTATT
1 ATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATT
*
8002758 TTATAATTAATTTTGTATTTATAGTTTTGGATTAGTATTTTGTATGAATAGTGTAATTTTTTGTA
66 TTATAATTAATTTTATATTTATAGTTTTGGATTAGTATTTTGTATGAATAGTGTAA-TTTTTGTA
8002823 TGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAA
130 TGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAA
* * * *
8002888 TGTTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTATATTTATAGTTTTGGATT
195 TATTATAATGTTGTATGAATATTATAATTATTTTATAATTAATTTTATATTTATAGTTTTGGATT
8002953 AGT
260 AGT
*
8002956 ATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATT
1 ATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATT
*
8003021 TTATAATTAATTTTATATTTATAGTTTTTGATTAGTATTTTGTATGAAT-GTCGTAA-TTTTGTA
66 TTATAATTAATTTTATATTTATAGTTTTGGATTAGTATTTTGTATGAATAGT-GTAATTTTTGTA
*
8003084 TGAATATTTTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAA
130 TGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAA
*
8003149 TATTATAATGTTGTATGAATATTATAATTATTTTATAATTAATTTTGTATTTATAGTTTTGGATT
195 TATTATAATGTTGTATGAATATTATAATTATTTTATAATTAATTTTATATTTATAGTTTTGGATT
8003214 AGT
260 AGT
8003217 ATTTTGTATGAATATTGTAATTTTGTAATTTTGTATGAATATTGTAATATTGTTTGTATGAATAT
1 ATTTTGTATGAATATTGTAA---T-T--TTTTGTATGAATATTGT-A-ATT-TTT-TATGAATAT
8003282 TGTAATT
56 TGTAATT
8003289 TTGTATGGAT
Statistics
Matches: 308, Mismatches: 14, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
261 153 0.50
262 2 0.01
263 111 0.36
264 1 0.00
265 1 0.00
267 17 0.06
268 1 0.00
269 3 0.01
270 3 0.01
271 16 0.05
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.56
Consensus pattern (262 bp):
ATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATT
TTATAATTAATTTTATATTTATAGTTTTGGATTAGTATTTTGTATGAATAGTGTAATTTTTGTAT
GAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAAT
ATTATAATGTTGTATGAATATTATAATTATTTTATAATTAATTTTATATTTATAGTTTTGGATTA
GT
Found at i:8003247 original size:27 final size:27
Alignment explanation
Indices: 8003217--8003293 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
8003207 TTGGATTAGT
8003217 ATTTTGTATGAATATTGTAATTTTGTA
1 ATTTTGTATGAATATTGTAATTTTGTA
*
8003244 ATTTTGTATGAATATTGTAATATTG--
1 ATTTTGTATGAATATTGTAATTTTGTA
8003269 --TTTGTATGAATATTGTAATTTTGTA
1 ATTTTGTATGAATATTGTAATTTTGTA
8003294 TGGATATTGT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
23 22 0.48
27 24 0.52
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.55
Consensus pattern (27 bp):
ATTTTGTATGAATATTGTAATTTTGTA
Found at i:8003289 original size:42 final size:42
Alignment explanation
Indices: 8003239--8003348 Score: 211
Period size: 42 Copynumber: 2.6 Consensus size: 42
8003229 TATTGTAATT
8003239 TTGTAATTTTGTATGAATATTGTAATATTGTTTGTATGAATA
1 TTGTAATTTTGTATGAATATTGTAATATTGTTTGTATGAATA
*
8003281 TTGTAATTTTGTATGGATATTGTAATATTGTTTGTATGAATA
1 TTGTAATTTTGTATGAATATTGTAATATTGTTTGTATGAATA
8003323 TTGTAATTTTGTATGAATATTGTAAT
1 TTGTAATTTTGTATGAATATTGTAAT
8003349 TATTTTATAA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 66 1.00
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.53
Consensus pattern (42 bp):
TTGTAATTTTGTATGAATATTGTAATATTGTTTGTATGAATA
Found at i:8003412 original size:60 final size:60
Alignment explanation
Indices: 8003342--8003463 Score: 183
Period size: 60 Copynumber: 2.0 Consensus size: 60
8003332 TGTATGAATA
* * * * *
8003342 TTGTAATTATTTTATAA-TTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGT
1 TTGTAATTA-TTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
8003402 TTGTAATTATTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
1 TTGTAATTATTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
8003462 TT
1 TT
8003464 AGTTTAGTAT
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
59 6 0.11
60 50 0.89
ACGTcount: A:0.32, C:0.01, G:0.13, T:0.54
Consensus pattern (60 bp):
TTGTAATTATTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
Found at i:8003617 original size:15 final size:16
Alignment explanation
Indices: 8003581--8003617 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
8003571 CTCATTTAAT
8003581 TTTTATATAATGTAAC
1 TTTTATATAATGTAAC
*
8003597 TTTTATATTATGTAA-
1 TTTTATATAATGTAAC
8003612 TTTTAT
1 TTTTAT
8003618 TTGATTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (16 bp):
TTTTATATAATGTAAC
Found at i:8003708 original size:15 final size:15
Alignment explanation
Indices: 8003688--8003738 Score: 84
Period size: 15 Copynumber: 3.4 Consensus size: 15
8003678 TAATACCATT
*
8003688 GGCGCCTCTCAGATA
1 GGCGCCTCTGAGATA
8003703 GGCGCCTCTGAGATA
1 GGCGCCTCTGAGATA
*
8003718 GGCACCTCTGAGATA
1 GGCGCCTCTGAGATA
8003733 GGCGCC
1 GGCGCC
8003739 AATACTATGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (15 bp):
GGCGCCTCTGAGATA
Found at i:8018214 original size:17 final size:17
Alignment explanation
Indices: 8018188--8018220 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8018178 TTTTTGAAAA
*
8018188 GTTGATAGTTAAATTTG
1 GTTGAAAGTTAAATTTG
8018205 GTTGAAAGTTAAATTT
1 GTTGAAAGTTAAATTT
8018221 AAATAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.45
Consensus pattern (17 bp):
GTTGAAAGTTAAATTTG
Found at i:8018237 original size:18 final size:17
Alignment explanation
Indices: 8018214--8018247 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8018204 GGTTGAAAGT
*
8018214 TAAATTTAAATAAAAAAC
1 TAAATTGAAA-AAAAAAC
8018232 TAAATTGAAAAAAAAA
1 TAAATTGAAAAAAAAA
8018248 TATTTATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (17 bp):
TAAATTGAAAAAAAAAC
Found at i:8019965 original size:69 final size:69
Alignment explanation
Indices: 8019832--8020027 Score: 266
Period size: 69 Copynumber: 2.8 Consensus size: 69
8019822 ATTGAATATA
* *
8019832 AAGGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT
1 AAGGGGGTTGCTAAGTGCTGATTCCCC---T-A--AGAGGTTGCTAAGTGCTGATTCCACCGTAT
8019897 TTTAAATCTG
60 TTTAAATCTG
8019907 AAGGGGGTTGCTAAGTGCTGATTCCCCTAAGAGGTTGCTAAGTGCTGATTCCACCGTATTTTAAA
1 AAGGGGGTTGCTAAGTGCTGATTCCCCTAAGAGGTTGCTAAGTGCTGATTCCACCGTATTTTAAA
*
8019972 TGTG
66 TCTG
* * * * *
8019976 AAGGGGGTTGCTAAGTGTTGATTCCCCCAAGGGGTTTCTAAGTGTTGATTCC
1 AAGGGGGTTGCTAAGTGCTGATTCCCCTAAGAGGTTGCTAAGTGCTGATTCC
8020028 CTGAATCATT
Statistics
Matches: 113, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
69 84 0.74
71 1 0.01
72 1 0.01
75 27 0.24
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (69 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCTAAGAGGTTGCTAAGTGCTGATTCCACCGTATTTTAAA
TCTG
Found at i:8024843 original size:15 final size:15
Alignment explanation
Indices: 8024820--8024871 Score: 68
Period size: 15 Copynumber: 3.4 Consensus size: 15
8024810 AAGTTTGCTT
8024820 GATAGAGAATTAAAG
1 GATAGAGAATTAAAG
*
8024835 GATACAGAATTAAAG
1 GATAGAGAATTAAAG
* *
8024850 GGTAGAAAATTAAAAG
1 GATAGAGAATT-AAAG
8024866 GATAGA
1 GATAGA
8024872 AAATATTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
15 22 0.71
16 9 0.29
ACGTcount: A:0.54, C:0.02, G:0.25, T:0.19
Consensus pattern (15 bp):
GATAGAGAATTAAAG
Found at i:8035722 original size:21 final size:21
Alignment explanation
Indices: 8035693--8035807 Score: 81
Period size: 21 Copynumber: 5.5 Consensus size: 21
8035683 AGTCAACTTA
8035693 TATGAGTTTCAGATTAACCCT
1 TATGAGTTTCAGATTAACCCT
* * *
8035714 TATGGGTTTCAG-TTCAGCTCT
1 TATGAGTTTCAGATT-AACCCT
* * *
8035735 TTTGAGCTTCAGTTTAACCCT
1 TATGAGTTTCAGATTAACCCT
* * * * **
8035756 AATGGGTTTCAGTTTAGCTTT
1 TATGAGTTTCAGATTAACCCT
*
8035777 TCTGAGCTTT-AGATTAACCCT
1 TATGAG-TTTCAGATTAACCCT
8035798 TATGAGTTTC
1 TATGAGTTTC
8035808 CGTTCAGCTC
Statistics
Matches: 67, Mismatches: 23, Indels: 8
0.68 0.23 0.08
Matches are distributed among these distances:
20 5 0.07
21 57 0.85
22 5 0.07
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (21 bp):
TATGAGTTTCAGATTAACCCT
Found at i:8035761 original size:42 final size:43
Alignment explanation
Indices: 8035695--8035819 Score: 173
Period size: 42 Copynumber: 3.0 Consensus size: 43
8035685 TCAACTTATA
*
8035695 TGAGTTTCAGATTAACCCTTATGGGTTTCAGTTCAGCTCTTT-
1 TGAGCTTCAGATTAACCCTTATGGGTTTCAGTTCAGCTCTTTC
* * *
8035737 TGAGCTTCAGTTTAACCCTAATGGGTTTCAGTTTAGCT-TTTC
1 TGAGCTTCAGATTAACCCTTATGGGTTTCAGTTCAGCTCTTTC
* * *
8035779 TGAGCTTTAGATTAACCCTTATGAGTTTCCGTTCAGCTCTT
1 TGAGCTTCAGATTAACCCTTATGGGTTTCAGTTCAGCTCTT
8035820 ATGGGTTTCC
Statistics
Matches: 71, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
41 3 0.04
42 66 0.93
43 2 0.03
ACGTcount: A:0.19, C:0.20, G:0.18, T:0.42
Consensus pattern (43 bp):
TGAGCTTCAGATTAACCCTTATGGGTTTCAGTTCAGCTCTTTC
Found at i:8035820 original size:21 final size:21
Alignment explanation
Indices: 8035796--8035855 Score: 86
Period size: 21 Copynumber: 2.9 Consensus size: 21
8035786 TAGATTAACC
8035796 CTTATGAGTTTCCGTTCAGCT
1 CTTATGAGTTTCCGTTCAGCT
*
8035817 CTTATGGGTTTCCGTTCAGCT
1 CTTATGAGTTTCCGTTCAGCT
*
8035838 CCTATGAGCTTT-CGTTCA
1 CTTATGAG-TTTCCGTTCA
8035856 ACATTTAAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
21 32 0.91
22 3 0.09
ACGTcount: A:0.13, C:0.25, G:0.20, T:0.42
Consensus pattern (21 bp):
CTTATGAGTTTCCGTTCAGCT
Found at i:8035894 original size:21 final size:19
Alignment explanation
Indices: 8035868--8035916 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
8035858 ATTTAAGGGT
*
8035868 TTCTGTTTAGCACTTATGTGA
1 TTCTGTTTAGC-CTT-TGGGA
**
8035889 TTCTGTGCAGCCTTTGGGA
1 TTCTGTTTAGCCTTTGGGA
8035908 TTCTGTTTA
1 TTCTGTTTA
8035917 CGATGTACTC
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 11 0.48
20 3 0.13
21 9 0.39
ACGTcount: A:0.14, C:0.16, G:0.22, T:0.47
Consensus pattern (19 bp):
TTCTGTTTAGCCTTTGGGA
Found at i:8050594 original size:18 final size:18
Alignment explanation
Indices: 8050571--8050605 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8050561 CCATAGCCAC
8050571 CTTCAC-CAATCACATTCT
1 CTTCACACAATC-CATTCT
8050589 CTTCACACAATCCATTC
1 CTTCACACAATCCATTC
8050606 GTAGCTAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.29, C:0.40, G:0.00, T:0.31
Consensus pattern (18 bp):
CTTCACACAATCCATTCT
Found at i:8053196 original size:34 final size:35
Alignment explanation
Indices: 8053158--8053225 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 35
8053148 CAGTAAAATG
* *
8053158 TTTTCTGTAAAATGATTT-TTGGAAAATATTTTCC
1 TTTTCTGTAAAATGATTTACTAGAAAATATTTTCC
8053192 TTTTCTGTAAAATGATTTACTAGAAAATATTTTC
1 TTTTCTGTAAAATGATTTACTAGAAAATATTTTC
8053226 TGCTATTTGG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 18 0.58
35 13 0.42
ACGTcount: A:0.32, C:0.09, G:0.10, T:0.49
Consensus pattern (35 bp):
TTTTCTGTAAAATGATTTACTAGAAAATATTTTCC
Found at i:8053840 original size:5 final size:5
Alignment explanation
Indices: 8053832--8053860 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
8053822 TGAGATGGTA
8053832 AGGTG AGGTG AGGTG AGGTG AGG-G AGGTG
1 AGGTG AGGTG AGGTG AGGTG AGGTG AGGTG
8053861 GTGGGTGACT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.21, C:0.00, G:0.62, T:0.17
Consensus pattern (5 bp):
AGGTG
Found at i:8061573 original size:11 final size:11
Alignment explanation
Indices: 8061550--8061580 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8061540 GTATTTTATA
8061550 AAAATAATA-C
1 AAAATAATATC
8061560 AAAATAATATC
1 AAAATAATATC
8061571 AAAATAATAT
1 AAAATAATAT
8061581 ATAAAAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (11 bp):
AAAATAATATC
Found at i:8061972 original size:152 final size:151
Alignment explanation
Indices: 8061697--8062513 Score: 1099
Period size: 155 Copynumber: 5.3 Consensus size: 151
8061687 CAATTGTTCG
*
8061697 TATTTCGGCTC-TTTATTCGTATTTTTTTCTCTA-ATTTTATTACTTTTAAAAAATATACTATTT
1 TATTTCGGC-CATTTGTTCGTATTTTTTTC-C-AGATTTTATTACTTTTAAAAAATATACTATTT
*
8061760 TGTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTT
63 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTT
* *
8061825 TTTAAATAAA-TTAAAAAAAATAT
128 TTTAAATAAATTTAAAAAAACTCT
* *
8061848 TATTTCAGCTC-TTTGTTCGTATTTTTTTCCTAGGATTTTATTTCTTTTAAAAAATATACTATTT
1 TATTTCGGC-CATTTGTTCGTATTTTTTTCC-A-GATTTTATTACTTTTAAAAAATATACTATTT
* *
8061912 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTCT
63 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTT
**
8061977 TTTATTTAAATTTTTAAAAAAACTCT
128 TTTAAATAAA--TTTAAAAAAACTCT
* * * *
8062003 TATTTCGGTCC-TTTGTTCATTTTTTTTTCC-GAACTTTATTACTTTTAATAAAAATATATTATT
1 TATTTCGG-CCATTTGTTCGTATTTTTTTCCAG-ATTTTATTACTTTT-A-AAAAATATACTATT
* * *
8062066 TT-TGTATTTTATTATTTTACATTACTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGT
62 TTCT-AATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGT
* *
8062130 TTTTTAAATAAATTTTTAAAAAACCCT
126 TTTTTAAATAAA-TTTAAAAAAACTCT
* *
8062157 TATTTCGGCCATTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTCAATAAGAATATATTATTT
1 TATTTCGGCCATTTGTTCGTATTTTTTT-CCAGATTTTATTACTTTTAA-AA-AATATACTATTT
*
8062222 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTT
63 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTT
*
8062287 TTTAAATAAATTTAGTAAAAAACCCT
128 TTTAAATAAATTTA--AAAAAACTCT
* * *
8062313 TATTTCGGCCATTTGTTCATATTTTTTTTCCAGATTTTATTACTTTAAAAAAATATAATATTTTC
1 TATTTCGGCCATTTGTTCGTA-TTTTTTTCCAGATTTTATTACTTTTAAAAAATATACTATTTTC
*
8062378 TAAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
65 T-AATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTT
*
8062443 TTAAATAAATTTTAAAAAAAACTAT
129 TTAAATAAA-TTT-AAAAAAACTCT
* *
8062468 TATTTCGGCCATTTGTTCGCATTTTTTTACCGGATTTTATTACTTT
1 TATTTCGGCCATTTGTTCGTATTTTTTT-CCAGATTTTATTACTTT
8062514 CAATAAAAAA
Statistics
Matches: 601, Mismatches: 42, Indels: 42
0.88 0.06 0.06
Matches are distributed among these distances:
150 3 0.00
151 27 0.04
152 100 0.17
153 15 0.02
154 65 0.11
155 328 0.55
156 55 0.09
157 8 0.01
ACGTcount: A:0.30, C:0.09, G:0.08, T:0.53
Consensus pattern (151 bp):
TATTTCGGCCATTTGTTCGTATTTTTTTCCAGATTTTATTACTTTTAAAAAATATACTATTTTCT
AATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTTTT
AAATAAATTTAAAAAAACTCT
Found at i:8062826 original size:40 final size:40
Alignment explanation
Indices: 8062782--8062857 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
8062772 GCGTTTGGAT
* *
8062782 AAAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTTAC
1 AAAAAACGCCGCCAAAAATCAAGCATTAGCGGCGCTTTAC
* *
8062822 AAAAAATGCCGCCAAAGATCAAGCATTAGCGGCGCT
1 AAAAAACGCCGCCAAAAATCAAGCATTAGCGGCGCT
8062858 ACTAAAAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.16
Consensus pattern (40 bp):
AAAAAACGCCGCCAAAAATCAAGCATTAGCGGCGCTTTAC
Found at i:8062991 original size:41 final size:41
Alignment explanation
Indices: 8062926--8063080 Score: 193
Period size: 41 Copynumber: 3.8 Consensus size: 41
8062916 ACACCTTTCG
* *
8062926 GGGCTTTAGCGGCATTTTTAGAGAAGCGCCGCTAATGCTCT
1 GGGCTTTAACGGCATTTTTAGAGAAGCGCCGCTAATGCTCC
* ** *
8062967 GGTCTTTAACGGTGTTTTTGGAGAAGCGCCGCTAATGCTCC
1 GGGCTTTAACGGCATTTTTAGAGAAGCGCCGCTAATGCTCC
* *
8063008 GGGCTTTAGCGGCATTTTTAGAGAAGCGCCGCTAATGCTCA
1 GGGCTTTAACGGCATTTTTAGAGAAGCGCCGCTAATGCTCC
* * * * *
8063049 GGGATTTAGCGGCGTTTTTAAAAAAGCGCCGC
1 GGGCTTTAACGGCATTTTTAGAGAAGCGCCGC
8063081 AAAAACATTT
Statistics
Matches: 98, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 98 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (41 bp):
GGGCTTTAACGGCATTTTTAGAGAAGCGCCGCTAATGCTCC
Found at i:8063076 original size:82 final size:82
Alignment explanation
Indices: 8062926--8063080 Score: 238
Period size: 82 Copynumber: 1.9 Consensus size: 82
8062916 ACACCTTTCG
* ** * ** *
8062926 GGGCTTTAGCGGCATTTTTAGAGAAGCGCCGCTAATGCTCTGGTCTTTAACGGTGTTTTTGGAGA
1 GGGCTTTAGCGGCATTTTTAGAGAAGCGCCGCTAATGCTCAGGGATTTAACGGCGTTTTTAAAAA
8062991 AGCGCCGCTAATGCTCC
66 AGCGCCGCTAATGCTCC
*
8063008 GGGCTTTAGCGGCATTTTTAGAGAAGCGCCGCTAATGCTCAGGGATTTAGCGGCGTTTTTAAAAA
1 GGGCTTTAGCGGCATTTTTAGAGAAGCGCCGCTAATGCTCAGGGATTTAACGGCGTTTTTAAAAA
8063073 AGCGCCGC
66 AGCGCCGC
8063081 AAAAACATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
82 65 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (82 bp):
GGGCTTTAGCGGCATTTTTAGAGAAGCGCCGCTAATGCTCAGGGATTTAACGGCGTTTTTAAAAA
AGCGCCGCTAATGCTCC
Found at i:8063752 original size:7 final size:7
Alignment explanation
Indices: 8063729--8063773 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
8063719 TAAATAAGGT
8063729 TTAGGGG
1 TTAGGGG
**
8063736 TTAGTAG
1 TTAGGGG
8063743 TTAGGGG
1 TTAGGGG
8063750 TTAGGGG
1 TTAGGGG
*
8063757 TTAGGGC
1 TTAGGGG
*
8063764 TTAGAGG
1 TTAGGGG
8063771 TTA
1 TTA
8063774 AGAGTTAGTA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.20, C:0.02, G:0.44, T:0.33
Consensus pattern (7 bp):
TTAGGGG
Found at i:8063767 original size:21 final size:21
Alignment explanation
Indices: 8063729--8063783 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
8063719 TAAATAAGGT
*
8063729 TTAGGGGTTAGTAGTTAGGGG
1 TTAGGGGTTAGTAGTTAGAGG
*
8063750 TTAGGGGTTAG-GGCTTAGAGG
1 TTAGGGGTTAGTAG-TTAGAGG
* *
8063771 TTAAGAGTTAGTA
1 TTAGGGGTTAGTA
8063784 ATTTAGGGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
20 1 0.04
21 26 0.96
ACGTcount: A:0.24, C:0.02, G:0.42, T:0.33
Consensus pattern (21 bp):
TTAGGGGTTAGTAGTTAGAGG
Found at i:8068170 original size:43 final size:43
Alignment explanation
Indices: 8068122--8068542 Score: 427
Period size: 43 Copynumber: 9.8 Consensus size: 43
8068112 TGATAACATG
* * *
8068122 TAAGACCATGTTTGGGACATTGGTATTG-TACTGTGATTACGTA
1 TAAGACCATGTCTGGGACATTGGCATCGATA-TGTGATTACGTA
* * * *
8068165 TAAGACCATGTCTGGGACATTGGCATCGTTATATGATTTCGCA
1 TAAGACCATGTCTGGGACATTGGCATCGATATGTGATTACGTA
* * * * *
8068208 TAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATAACATG
1 TAAGACCATGTCTGGGACATTGGCATCGATATGTGATTACGTA
* * *
8068251 TAAGACCATGTTTGGGACATTGACATTG-TAATGTGATTACGTA
1 TAAGACCATGTCTGGGACATTGGCATCGAT-ATGTGATTACGTA
* ** * * *
8068294 TAAGACCCTGTCTGGGACGGTGGCATCGATATGTGATAACATG
1 TAAGACCATGTCTGGGACATTGGCATCGATATGTGATTACGTA
* *
8068337 TAAGATCATGTCTGGGACATTGGCATTG-TACTGTGATTACGTA
1 TAAGACCATGTCTGGGACATTGGCATCGATA-TGTGATTACGTA
* * * * * *
8068380 TAAGACCTTATCTGGGACAGTGGCATCGATATGTGATAACATG
1 TAAGACCATGTCTGGGACATTGGCATCGATATGTGATTACGTA
* *
8068423 TAAGACCATGTTTGGGACATTGGCATTG-TACTGTGATTACGTA
1 TAAGACCATGTCTGGGACATTGGCATCGATA-TGTGATTACGTA
* * * * **
8068466 TAAGACCATGTTTGGGACATTGACATCGTTATATGATTTTGTA
1 TAAGACCATGTCTGGGACATTGGCATCGATATGTGATTACGTA
* *
8068509 TAAGACCCTGTCTGGGACAGTGGCATCGATATGT
1 TAAGACCATGTCTGGGACATTGGCATCGATATGT
8068543 AATAACATGT
Statistics
Matches: 304, Mismatches: 67, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
42 5 0.02
43 292 0.96
44 7 0.02
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATTGGCATCGATATGTGATTACGTA
Found at i:8068224 original size:86 final size:86
Alignment explanation
Indices: 8068122--8068534 Score: 497
Period size: 86 Copynumber: 4.8 Consensus size: 86
8068112 TGATAACATG
* * * * * * *
8068122 TAAGACCATGTTTGGGACATTGGTATTG-TACTGTGATTACGTATAAGACCATGTCTGGGACATT
1 TAAGACCATGTCTGGGACAGTGGCATCGATA-TGTGATAACATGTAAGACCATGTCTGGGACATT
* * * *
8068186 GGCATCGTTA-TATGATTTCGCA
65 GGCATTG-TACTGTGATTACGTA
* *
8068208 TAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATAACATGTAAGACCATGTTTGGGACATTG
1 TAAGACCATGTCTGGGACAGTGGCATCGATATGTGATAACATGTAAGACCATGTCTGGGACATTG
* *
8068273 ACATTGTAATGTGATTACGTA
66 GCATTGTACTGTGATTACGTA
* * *
8068294 TAAGACCCTGTCTGGGACGGTGGCATCGATATGTGATAACATGTAAGATCATGTCTGGGACATTG
1 TAAGACCATGTCTGGGACAGTGGCATCGATATGTGATAACATGTAAGACCATGTCTGGGACATTG
8068359 GCATTGTACTGTGATTACGTA
66 GCATTGTACTGTGATTACGTA
* * *
8068380 TAAGACCTTATCTGGGACAGTGGCATCGATATGTGATAACATGTAAGACCATGTTTGGGACATTG
1 TAAGACCATGTCTGGGACAGTGGCATCGATATGTGATAACATGTAAGACCATGTCTGGGACATTG
8068445 GCATTGTACTGTGATTACGTA
66 GCATTGTACTGTGATTACGTA
* * * * * **** * * *
8068466 TAAGACCATGTTTGGGACATTGACATCGTTATATGATTTTGTATAAGACCCTGTCTGGGACAGTG
1 TAAGACCATGTCTGGGACAGTGGCATCGATATGTGATAACATGTAAGACCATGTCTGGGACATTG
8068531 GCAT
66 GCAT
8068535 CGATATGTAA
Statistics
Matches: 286, Mismatches: 39, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
85 2 0.01
86 282 0.99
87 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (86 bp):
TAAGACCATGTCTGGGACAGTGGCATCGATATGTGATAACATGTAAGACCATGTCTGGGACATTG
GCATTGTACTGTGATTACGTA
Found at i:8072205 original size:27 final size:27
Alignment explanation
Indices: 8072175--8072230 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
8072165 AATTTCGAGG
*
8072175 TTTACAATTTT-TAATTTTTATTAATTA
1 TTTAC-ATTTTCTAACTTTTATTAATTA
* *
8072202 TTTACGTTTTCTCACTTTTATTAATTA
1 TTTACATTTTCTAACTTTTATTAATTA
8072229 TT
1 TT
8072231 ATTATTTAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.27, C:0.09, G:0.02, T:0.62
Consensus pattern (27 bp):
TTTACATTTTCTAACTTTTATTAATTA
Found at i:8072570 original size:43 final size:43
Alignment explanation
Indices: 8072456--8072672 Score: 229
Period size: 43 Copynumber: 5.0 Consensus size: 43
8072446 AAAGGTTTGT
** * *
8072456 TCTATAGCGGCGTTTGTGATAAAAAGCGCCGCTAAAGGTCATGT
1 TCTATAGCGGCGTTTGTG-GGAAAAGCGCCGCTAAAAGTCATGG
* ** ** *
8072500 TCTTTAGCGGCGGCGTTTGTGACAAAAGTTCTGCTAAAAGTCATGG
1 TCTATA---GCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGG
*
8072546 TCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGG
1 TCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGG
* * * *
8072589 TCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAAATCGTGG
1 TCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGG
* * *
8072632 TCTATAGCGGCGTTTGTGGG-AAAGTGCTGCTAAAGGTCATG
1 TCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATG
8072673 ACTTTTAGCG
Statistics
Matches: 143, Mismatches: 27, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
42 16 0.11
43 87 0.61
44 5 0.03
46 23 0.16
47 12 0.08
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (43 bp):
TCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGG
Found at i:8072638 original size:86 final size:86
Alignment explanation
Indices: 8072456--8072688 Score: 292
Period size: 86 Copynumber: 2.7 Consensus size: 86
8072446 AAAGGTTTGT
** *
8072456 TCTATAGCGGCGTTTGTGATAAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGGCGTTTGTG
1 TCTATAGCGGCGTTTGTG-GGAAAAGCGCCGCTAAAGGTCATGGTCTTTA---GCGGCGTTTGTG
** * *
8072521 ACAAAAGTTCTGCTAAAAGTCATGG
62 ACAAAAGCGCCGCTAAAAATCATGG
8072546 TCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGA-A
1 TCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGT-GACA
*
8072610 AAAGCGCCGCTAAAAATCGTGG
65 AAAGCGCCGCTAAAAATCATGG
* * *
8072632 TCTATAGCGGCGTTTGTGGG-AAAGTGCTGCTAAAGGTCAT-GACTTTTAGCGGCGTTT
1 TCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC-TTTAGCGGCGTTT
8072689 ATTTCTAAAA
Statistics
Matches: 130, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
84 2 0.02
85 31 0.24
86 49 0.38
87 2 0.02
89 28 0.22
90 18 0.14
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (86 bp):
TCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGACAA
AAGCGCCGCTAAAAATCATGG
Found at i:8096049 original size:29 final size:29
Alignment explanation
Indices: 8096017--8096074 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
8096007 CACCTTGACA
* *
8096017 TTTAAATATAAATGACTAAAACGTAACAT
1 TTTAAACATAAATAACTAAAACGTAACAT
*
8096046 TTTAAACATAAATAACTAAAATGTAACAT
1 TTTAAACATAAATAACTAAAACGTAACAT
8096075 GAGACAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.53, C:0.10, G:0.05, T:0.31
Consensus pattern (29 bp):
TTTAAACATAAATAACTAAAACGTAACAT
Found at i:8105283 original size:6 final size:6
Alignment explanation
Indices: 8105274--8105301 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
8105264 ATTTTAAATT
8105274 TAATGA TAATGA TAATGA TAATGA TAAT
1 TAATGA TAATGA TAATGA TAATGA TAAT
8105302 TTTTAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (6 bp):
TAATGA
Found at i:8110789 original size:47 final size:50
Alignment explanation
Indices: 8110691--8110799 Score: 134
Period size: 47 Copynumber: 2.2 Consensus size: 50
8110681 CATGACAATA
* *
8110691 TGTGATATGTGATTTCCGTATAAGACCATAGTTGGGCTATGGCATC-A-G
1 TGTGATATGTGACTTCCGTATAAGAACATAGTTGGGCTATGGCATCGATG
* * * * *
8110739 TGTGATATGTG-CTTCCGTGTAAGAACATGGTTGGGCTATGGCTTTGGTG
1 TGTGATATGTGACTTCCGTATAAGAACATAGTTGGGCTATGGCATCGATG
8110788 TGTGATATGTGA
1 TGTGATATGTGA
8110800 TTATATGCAA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
47 28 0.55
48 11 0.22
49 12 0.24
ACGTcount: A:0.21, C:0.12, G:0.31, T:0.36
Consensus pattern (50 bp):
TGTGATATGTGACTTCCGTATAAGAACATAGTTGGGCTATGGCATCGATG
Found at i:8111370 original size:25 final size:25
Alignment explanation
Indices: 8111342--8111403 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
8111332 ACCTTAGCGC
*
8111342 GCTCTCTGATTATTAGCA-GATCAGT
1 GCTCTCTGATTATTAACACG-TCAGT
*
8111367 GCTCTCTGATTATTAACACGTTAGT
1 GCTCTCTGATTATTAACACGTCAGT
*
8111392 GCTCTCCGATTA
1 GCTCTCTGATTA
8111404 GCACATCTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 32 0.97
26 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.37
Consensus pattern (25 bp):
GCTCTCTGATTATTAACACGTCAGT
Found at i:8111437 original size:22 final size:23
Alignment explanation
Indices: 8111364--8111444 Score: 78
Period size: 22 Copynumber: 3.5 Consensus size: 23
8111354 TTAGCAGATC
*
8111364 AGTGCTCTCTGATTATTAACACGTT
1 AGTGCTCTCTG--TATTAACACTTT
* * *
8111389 AGTGCTCTCCG-ATTAGCACATCT
1 AGTGCTCTCTGTATTAACAC-TTT
8111412 -GTGCTCTCTGTA-TAACACTTT
1 AGTGCTCTCTGTATTAACACTTT
8111433 AGTGCTCTCTGT
1 AGTGCTCTCTGT
8111445 TCATTAGTGC
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
21 2 0.04
22 32 0.70
23 2 0.04
25 10 0.22
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (23 bp):
AGTGCTCTCTGTATTAACACTTT
Found at i:8111451 original size:47 final size:48
Alignment explanation
Indices: 8111342--8111451 Score: 129
Period size: 47 Copynumber: 2.3 Consensus size: 48
8111332 ACCTTAGCGC
*
8111342 GCTCTCTGATTATTAGCAGATCAGTGCTCTCTGATTATTAACACGTTAGT
1 GCTCTCTG-TTATTAGCACATCAGTGCTCTCTGA-TATTAACACGTTAGT
* * *
8111392 GCTCTCCG--ATTAGCACATCTGTGCTCTCTG-TA-TAACACTTTAGT
1 GCTCTCTGTTATTAGCACATCAGTGCTCTCTGATATTAACACGTTAGT
8111436 GCTCTCTGTTCATTAG
1 GCTCTCTGTT-ATTAG
8111452 TGCATAATAA
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
44 18 0.35
45 2 0.04
47 25 0.48
50 7 0.13
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (48 bp):
GCTCTCTGTTATTAGCACATCAGTGCTCTCTGATATTAACACGTTAGT
Found at i:8114596 original size:28 final size:28
Alignment explanation
Indices: 8114561--8114631 Score: 126
Period size: 28 Copynumber: 2.6 Consensus size: 28
8114551 ATAAAAAATA
*
8114561 ACCAAAATATTATAACTTTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTTATTT
8114589 ACCAAAATATTATAAATTTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTTATTT
8114617 ACCAAAATA-TATAAA
1 ACCAAAATATTATAAA
8114632 AAAAAAAAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 6 0.14
28 36 0.86
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (28 bp):
ACCAAAATATTATAAATTTTTTTTATTT
Found at i:8114720 original size:27 final size:27
Alignment explanation
Indices: 8114690--8114768 Score: 122
Period size: 27 Copynumber: 2.9 Consensus size: 27
8114680 GGCCAATCAC
*
8114690 ATTGGCGGCACCAAAGGTGCCAAAGAG
1 ATTGGCGGCACCAATGGTGCCAAAGAG
* *
8114717 ATTGGCGGCACCAATGGTGCCAATGTG
1 ATTGGCGGCACCAATGGTGCCAAAGAG
*
8114744 ATTGGTGGCACCAATGGTGCCAAAG
1 ATTGGCGGCACCAATGGTGCCAAAG
8114769 GACTAAAATG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.28, C:0.22, G:0.33, T:0.18
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAAAGAG
Found at i:8115098 original size:19 final size:19
Alignment explanation
Indices: 8115074--8115139 Score: 91
Period size: 19 Copynumber: 3.5 Consensus size: 19
8115064 ATTAAAATAG
8115074 TTTAATTTAATAACTCTAT
1 TTTAATTTAATAACTCTAT
* *
8115093 TTTAATGTAATAA-ACTAT
1 TTTAATTTAATAACTCTAT
8115111 TCTT-ATTTAATAACTCTAT
1 T-TTAATTTAATAACTCTAT
8115130 TTTAATTTAA
1 TTTAATTTAA
8115140 AAAAATTAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
18 15 0.38
19 25 0.62
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.52
Consensus pattern (19 bp):
TTTAATTTAATAACTCTAT
Found at i:8115405 original size:18 final size:19
Alignment explanation
Indices: 8115366--8115462 Score: 117
Period size: 18 Copynumber: 5.2 Consensus size: 19
8115356 ATTTTATATT
8115366 TTAAATGAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
* *
8115385 TTAAATGAGAATAG-TTTA
1 TTAAATGAAAATAGAGTTA
*
8115403 TTAAATTAAAATATGAGTTA
1 TTAAATGAAAATA-GAGTTA
* *
8115423 TTAAATGAGAATAG-TTTA
1 TTAAATGAAAATAGAGTTA
*
8115441 TTAAATTAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
8115460 TTA
1 TTA
8115463 CTTAATTAGA
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
18 29 0.45
19 21 0.33
20 14 0.22
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.38
Consensus pattern (19 bp):
TTAAATGAAAATAGAGTTA
Found at i:8115428 original size:38 final size:37
Alignment explanation
Indices: 8115366--8115462 Score: 176
Period size: 38 Copynumber: 2.6 Consensus size: 37
8115356 ATTTTATATT
*
8115366 TTAAATGAAAATAGAGTTATTAAATGAGAATAGTTTA
1 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
8115403 TTAAATTAAAATATGAGTTATTAAATGAGAATAGTTTA
1 TTAAATTAAAATA-GAGTTATTAAATGAGAATAGTTTA
8115441 TTAAATTAAAATAGAGTTATTA
1 TTAAATTAAAATAGAGTTATTA
8115463 CTTAATTAGA
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
37 21 0.36
38 37 0.64
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.38
Consensus pattern (37 bp):
TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
Found at i:8116117 original size:27 final size:27
Alignment explanation
Indices: 8116036--8116118 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 27
8116026 TAGTCCTTTC
* *
8116036 GCACCATTGGTGCTGCCAATCACATTG
1 GCACCATTGGTGCCGCCAATCTCATTG
*
8116063 GCACCATTGGTGCCGCCAATCTCTTTG
1 GCACCATTGGTGCCGCCAATCTCATTG
* * *
8116090 GCACCTTTGGTGCCGCCAATGTGATTG
1 GCACCATTGGTGCCGCCAATCTCATTG
8116117 GC
1 GC
8116119 CTGATCAGGC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.17, C:0.30, G:0.25, T:0.28
Consensus pattern (27 bp):
GCACCATTGGTGCCGCCAATCTCATTG
Found at i:8116197 original size:27 final size:27
Alignment explanation
Indices: 8116167--8116230 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
8116157 TTTTTTTAGT
8116167 ATATTTTGGTAAATAAAAAAAATTATA
1 ATATTTTGGTAAATAAAAAAAATTATA
*
8116194 ATATTTTGGTAAATAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAATTATA
8116221 ATATTTTGGT
1 ATATTTTGGT
8116231 TATTTTTTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAATTATA
Found at i:8123795 original size:25 final size:24
Alignment explanation
Indices: 8123755--8123823 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 24
8123745 CCTATACGAG
* * *
8123755 CATATAATTGGGAAGCTCTTTTGATC
1 CATATAA-AGGGAAGCTCTGTT-AGC
8123781 CATATAAAGGGAAGCTCATGTTAGC
1 CATATAAAGGGAAGCTC-TGTTAGC
* *
8123806 CATGTAACGGGAAGCTCT
1 CATATAAAGGGAAGCTCT
8123824 AGAGAGCCAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 1 0.03
25 26 0.70
26 10 0.27
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (24 bp):
CATATAAAGGGAAGCTCTGTTAGC
Found at i:8123925 original size:25 final size:24
Alignment explanation
Indices: 8123851--8123956 Score: 90
Period size: 25 Copynumber: 4.4 Consensus size: 24
8123841 AGGTTCAAGC
8123851 GAGCCAATATCGAGAAGCTCCGAA
1 GAGCCAATATCGAGAAGCTCCGAA
* * * **
8123875 AAGCCATTAACG-GAAAGCTCATAA
1 GAGCCAATATCGAG-AAGCTCCGAA
* * *
8123899 GAGCCATTGATCGGGAAGCTCTGAA
1 GAGCCAAT-ATCGAGAAGCTCCGAA
*
8123924 GACCCAAATATCGAGAAGCTCCGAA
1 GAGCC-AATATCGAGAAGCTCCGAA
8123949 GAG-CAATA
1 GAGCCAATA
8123957 AATGAGAAGC
Statistics
Matches: 64, Mismatches: 14, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
23 5 0.08
24 25 0.39
25 31 0.48
26 3 0.05
ACGTcount: A:0.39, C:0.23, G:0.24, T:0.15
Consensus pattern (24 bp):
GAGCCAATATCGAGAAGCTCCGAA
Found at i:8123967 original size:74 final size:75
Alignment explanation
Indices: 8123856--8123995 Score: 185
Period size: 74 Copynumber: 1.9 Consensus size: 75
8123846 CAAGCGAGCC
* * * * *
8123856 AATATCGAGAAGCTCCGAAAAGCCATTAACGGAAAGCTCATAAG-AGCCATTGATCGGGAAGCTC
1 AATATCGAGAAGCTCCGAAAAGCAATAAACGGAAAGCTCAAAAGAAGCCATTAATCAGGAAGCTC
8123920 TGAAGACCCA
66 TGAAGACCCA
* *
8123930 AATATCGAGAAGCTCCGAAGAGCAATAAA-TGAGAAGCTCAAAAGAAAGCCATTAATCAGGAAGC
1 AATATCGAGAAGCTCCGAAAAGCAATAAACGGA-AAGCTCAAAAG-AAGCCATTAATCAGGAAGC
8123994 TC
64 TC
8123996 GCAAGAATCA
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
73 2 0.04
74 36 0.64
76 18 0.32
ACGTcount: A:0.41, C:0.21, G:0.22, T:0.16
Consensus pattern (75 bp):
AATATCGAGAAGCTCCGAAAAGCAATAAACGGAAAGCTCAAAAGAAGCCATTAATCAGGAAGCTC
TGAAGACCCA
Found at i:8132304 original size:25 final size:25
Alignment explanation
Indices: 8132272--8132390 Score: 91
Period size: 25 Copynumber: 4.8 Consensus size: 25
8132262 AGCTCTCTCT
8132272 TGAGCCATATAACAGGAAGCTCATA
1 TGAGCCATATAACAGGAAGCTCATA
* * * *
8132297 TGAGCCATGTAACGGGAAGCTTATC
1 TGAGCCATATAACAGGAAGCTCATA
* * ** *
8132322 CGGGCTGTATAACGGGAAGCTCATA
1 TGAGCCATATAACAGGAAGCTCATA
* * *
8132347 AGAGCCATA-ATCAGGAAGCTCATGC
1 TGAGCCATATAACAGGAAGCTCAT-A
*
8132372 T-AGCCA-ATAACAGGTAGCT
1 TGAGCCATATAACAGGAAGCT
8132391 TCGAAGAGCC
Statistics
Matches: 71, Mismatches: 21, Indels: 5
0.73 0.22 0.05
Matches are distributed among these distances:
23 1 0.01
24 26 0.37
25 44 0.62
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (25 bp):
TGAGCCATATAACAGGAAGCTCATA
Found at i:8132367 original size:24 final size:24
Alignment explanation
Indices: 8132336--8132548 Score: 73
Period size: 25 Copynumber: 8.7 Consensus size: 24
8132326 CTGTATAACG
8132336 GGAAGCTCATAAGAGCCATAATCA
1 GGAAGCTCATAAGAGCCATAATCA
***
8132360 GGAAGCTCATGCTAGCCAATAA-CA
1 GGAAGCTCATAAGAGCC-ATAATCA
* *
8132384 GGTAGCTTC-GAAGAGCCATTAATC-
1 GGAAGC-TCATAAGAGCCA-TAATCA
* *
8132408 GAGAAACTC-TGAATAGCCATATATC-
1 G-GAAGCTCAT-AAGAGCCATA-ATCA
* **
8132433 GAGAAGTTCATGCGAGCCAT-ATC-
1 G-GAAGCTCATAAGAGCCATAATCA
***
8132456 GGAAGCTCCGGAGAGCCAATAATCA
1 GGAAGCTCATAAGAGCC-ATAATCA
* * **
8132481 GGAAGCTCACAAAGAGCCTTTAATTG
1 GGAAGCTCA-TAAGAGCC-ATAATCA
* *
8132507 GGAAACTCACGAAGAGCCATATATCA
1 GGAAGCTCA-TAAGAGCCATA-ATCA
*
8132533 -GAACACTCATAAGAGC
1 GGAA-GCTCATAAGAGC
8132549 TGCGGTGTGT
Statistics
Matches: 141, Mismatches: 34, Indels: 27
0.70 0.17 0.13
Matches are distributed among these distances:
22 12 0.09
23 7 0.05
24 36 0.26
25 52 0.37
26 34 0.24
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (24 bp):
GGAAGCTCATAAGAGCCATAATCA
Found at i:8132450 original size:98 final size:98
Alignment explanation
Indices: 8132348--8132535 Score: 220
Period size: 98 Copynumber: 1.9 Consensus size: 98
8132338 AAGCTCATAA
* ** * * *
8132348 GAGCCATAATCAGGAAGCTCATGCTAGCCAATAA-CAGGTAGCT-TCGAAGAGCCATTAATCGAG
1 GAGCCAT-ATC-GGAAGCTCAGGAGAGCCAATAATCAGGAAGCTCACAAAGAGCCATTAATCGAG
* *
8132411 AAACTC-TGAATAGCCATATATCGAGAAGTTCATGC
64 AAACTCACGAAGAGCCATATATC-AGAAGTTCATGC
* * * *
8132446 GAGCCATATCGGAAGCTCCGGAGAGCCAATAATCAGGAAGCTCACAAAGAGCCTTTAATTGGGAA
1 GAGCCATATCGGAAGCTCAGGAGAGCCAATAATCAGGAAGCTCACAAAGAGCCATTAATCGAGAA
8132511 ACTCACGAAGAGCCATATATCAGAA
66 ACTCACGAAGAGCCATATATCAGAA
8132536 CACTCATAAG
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
96 18 0.24
97 11 0.15
98 32 0.43
99 14 0.19
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (98 bp):
GAGCCATATCGGAAGCTCAGGAGAGCCAATAATCAGGAAGCTCACAAAGAGCCATTAATCGAGAA
ACTCACGAAGAGCCATATATCAGAAGTTCATGC
Found at i:8132504 original size:26 final size:26
Alignment explanation
Indices: 8132475--8132524 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
8132465 GGAGAGCCAA
*
8132475 TAATCAGGAAGCTCACAAAGAGCCTT
1 TAATCAGGAAACTCACAAAGAGCCTT
** *
8132501 TAATTGGGAAACTCACGAAGAGCC
1 TAATCAGGAAACTCACAAAGAGCC
8132525 ATATATCAGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
TAATCAGGAAACTCACAAAGAGCCTT
Found at i:8151694 original size:13 final size:13
Alignment explanation
Indices: 8151673--8151710 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
8151663 ACACTCAAAA
*
8151673 TTCTCAAAAGTAC
1 TTCTCAAAAGCAC
*
8151686 TTCTGAAAAGCAC
1 TTCTCAAAAGCAC
8151699 TTCTCAAAAGCA
1 TTCTCAAAAGCA
8151711 ATGAAGAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.26
Consensus pattern (13 bp):
TTCTCAAAAGCAC
Found at i:8152732 original size:14 final size:14
Alignment explanation
Indices: 8152705--8152742 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
8152695 TTTTAATTTA
* *
8152705 ATATGCAATCATAT
1 ATATGAAATTATAT
8152719 ATATGAAATTATAT
1 ATATGAAATTATAT
8152733 ATATGAAATT
1 ATATGAAATT
8152743 CTAATTGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.39
Consensus pattern (14 bp):
ATATGAAATTATAT
Done.