genome.fa.s24.2.7.7.80.10.50.1000.224.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  224  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67252539--67252678	43	3.3	43	79	6	126	30	25	15	29	1.95
67261910--67261957	16	2.9	16	81	3	60	27	0	4	68	1.07
67262009--67262033	12	2.1	12	100	0	50	52	0	24	24	1.48
67262886--67262912	3	9.0	3	100	0	54	33	33	0	33	1.58
67266638--67266794	81	1.9	80	80	5	181	43	3	14	38	1.64
67271078--67271105	3	9.3	3	100	0	56	67	0	0	32	0.91
67274664--67274756	31	3.1	32	86	9	108	62	9	3	24	1.41
67274670--67274713	22	2.0	23	86	4	63	63	9	4	22	1.42
67274679--67274756	31	2.6	29	90	8	113	65	10	2	21	1.35
67277192--67277231	13	3.1	13	96	0	71	25	7	27	40	1.82
67278868--67278892	3	8.3	3	100	0	50	36	0	0	64	0.94
67279388--67279431	22	2.0	22	100	0	88	59	18	13	9	1.60
67280397--67280430	16	2.1	17	88	5	52	35	0	0	64	0.94
67282440--67282587	33	4.4	34	71	11	106	29	16	26	27	1.97
67282406--67282645	101	2.4	101	90	0	363	32	15	24	27	1.95
67282638--67282684	24	2.0	24	100	0	94	44	4	29	21	1.71
67284466--67284503	19	2.0	19	94	0	67	60	13	5	21	1.52
67285112--67285146	15	2.2	16	90	5	54	42	0	0	57	0.99
67285115--67285168	21	2.4	22	81	12	56	42	0	0	57	0.98
67285663--67285738	38	2.0	38	92	0	125	17	36	10	35	1.84
67287122--67287161	16	2.6	15	84	7	53	37	0	2	60	1.11
67287352--67287391	18	2.4	18	84	12	50	20	15	5	60	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67287700--67287732	16	2.1	16	100	0	66	12	12	18	57	1.64
67303206--67303258	20	2.6	21	76	8	56	24	0	9	66	1.21
67308743--67308793	6	8.3	6	91	4	84	31	0	17	50	1.46
67308951--67308978	2	14.0	2	100	0	56	50	0	50	0	1.00
67309692--67309738	15	3.2	15	79	11	53	61	2	2	34	1.20
67317620--67317913	46	6.3	47	89	7	411	35	14	21	28	1.93
67317877--67317985	37	3.0	37	90	2	177	35	16	22	24	1.95
67319784--67319879	45	2.1	45	80	3	104	43	18	14	22	1.87
67320088--67320175	40	2.2	40	81	6	97	42	21	6	29	1.79
67324429--67324513	26	3.4	25	79	12	86	32	2	5	58	1.35
67324558--67324595	13	2.8	14	84	15	53	63	0	0	36	0.95
67326240--67326286	15	3.0	15	82	14	51	63	2	0	34	1.06
67330337--67330387	22	2.3	23	79	3	59	43	7	23	25	1.81
67333360--67333399	14	2.9	14	84	0	53	37	5	12	45	1.64
67333368--67333434	34	1.9	35	90	3	109	35	7	8	47	1.63
67339060--67339089	16	1.9	15	100	0	51	53	0	0	46	1.00
67339726--67339755	7	4.4	7	95	4	53	60	13	0	26	1.34
67341306--67341358	26	2.0	27	82	10	65	28	1	9	60	1.38
67350518--67350552	6	5.8	6	100	0	70	14	68	0	17	1.21
67370623--67370702	38	2.1	38	84	6	101	40	1	0	58	1.06
67370663--67370719	26	2.1	27	83	3	71	29	1	3	64	1.20
67372025--67372091	30	2.2	29	79	7	71	49	4	2	43	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67374494--67374544	22	2.4	22	80	9	61	49	0	0	50	1.00
67375695--67375722	3	9.3	3	100	0	56	67	0	0	32	0.91
67380655--67380695	21	2.0	21	90	0	64	29	21	29	19	1.98
67395633--67395993	186	1.9	187	83	5	471	29	25	17	27	1.98
67396215--67396239	9	2.8	9	100	0	50	20	24	24	32	1.98
67396526--67396657	66	2.0	65	88	1	192	33	17	26	22	1.96
67404356--67404404	21	2.3	21	82	0	62	40	26	20	12	1.87
67407545--67407599	26	2.1	27	82	3	67	25	7	25	41	1.81
67407627--67407708	33	2.6	30	81	11	85	23	10	18	47	1.80
67410095--67410128	15	2.3	15	90	10	52	79	2	14	2	0.97
67410107--67410163	29	2.0	28	83	16	73	73	10	15	0	1.09
67410098--67410160	22	2.8	22	80	9	65	76	7	14	1	1.08
67410518--67410561	23	1.9	24	90	9	74	54	2	20	22	1.56
67419033--67419255	107	2.1	105	77	12	233	47	9	12	29	1.73
67420416--67420463	18	2.7	18	77	3	53	25	4	2	68	1.18
67445300--67445331	5	6.2	5	96	3	55	40	0	0	59	0.97
67445354--67445419	21	3.0	21	69	18	62	63	13	22	0	1.29
67445342--67445445	44	2.3	44	85	9	140	64	8	26	0	1.22
67445342--67445441	40	2.3	42	83	10	123	64	9	27	0	1.23
67445340--67445445	45	2.4	45	82	7	135	64	8	27	0	1.22
67446636--67446747	37	2.9	39	73	8	111	22	20	27	29	1.98
67457766--67457851	45	1.9	45	100	0	172	45	16	9	29	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67457886--67458055	87	2.0	87	97	0	322	31	5	28	34	1.81
67464894--67464930	18	2.1	18	89	0	56	29	5	2	62	1.31
67474615--67474648	18	1.9	18	88	5	52	29	2	0	67	1.05
67476849--67476887	13	2.9	13	88	11	53	84	0	7	7	0.77
67476852--67476891	15	2.7	15	88	0	62	82	0	7	10	0.84
67479952--67479991	11	3.5	11	80	6	53	70	5	0	25	1.08
67479955--67479994	12	3.4	12	79	6	55	67	5	0	27	1.11
67479950--67479995	23	2.0	23	100	0	92	65	8	0	26	1.21
67483464--67483505	15	2.8	15	80	20	52	45	2	2	50	1.27
67502179--67502213	17	2.1	17	100	0	70	42	5	22	28	1.76
67517788--67517831	18	2.4	19	81	7	56	40	0	2	56	1.11
67523816--67523973	77	2.1	77	95	0	280	35	18	23	22	1.96
67524156--67524230	21	3.4	21	78	10	71	42	1	0	56	1.08
67524148--67524232	22	3.8	22	74	12	75	43	1	0	55	1.07
67524928--67524987	28	2.1	28	81	6	68	65	1	0	33	1.03
67535457--67535568	57	2.0	57	100	0	224	46	14	10	28	1.78
67538018--67538093	19	3.9	18	69	17	55	30	3	2	63	1.26
67543090--67543163	18	4.2	17	84	8	103	33	12	22	31	1.91
67543086--67543160	36	2.1	36	92	0	123	33	13	21	32	1.92
67553196--67553247	27	1.9	27	96	0	95	15	32	23	28	1.95
67553307--67553369	28	2.3	27	91	2	99	47	0	9	42	1.36
67554023--67554062	16	2.5	16	83	0	53	40	35	2	22	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67554110--67554194	43	2.0	43	100	0	170	18	30	16	34	1.93
67554597--67554665	9	7.4	9	82	6	84	26	8	26	39	1.85
67554599--67554638	20	2.0	20	90	0	62	22	10	25	42	1.84
67554597--67554665	29	2.5	27	92	4	111	26	8	26	39	1.85
67556362--67556417	28	2.0	28	96	0	103	46	12	17	23	1.82
67559250--67559315	33	2.0	33	96	0	123	27	15	25	31	1.95
67561496--67561554	31	1.9	31	82	6	75	33	11	11	42	1.78
67563117--67563352	22	11.1	21	72	20	102	30	1	12	55	1.45
67563119--67563300	61	3.0	60	71	20	171	30	1	13	54	1.46
67563238--67563399	76	2.2	70	87	7	200	31	0	12	54	1.43
67563159--67563312	80	1.9	82	84	7	208	30	0	13	55	1.38
67563248--67563403	27	6.1	27	81	13	195	32	0	12	54	1.42
67563248--67563379	49	2.7	49	90	1	210	32	0	11	55	1.41
67563346--67563390	8	5.2	8	80	15	54	31	0	11	57	1.33
67563115--67563355	19	12.5	19	71	19	153	31	1	12	54	1.46
67563419--67563459	21	1.9	22	95	5	75	36	0	7	56	1.27
67563444--67563565	60	2.0	60	85	6	167	31	0	13	54	1.44
67563599--67563680	38	2.2	38	95	0	146	54	2	2	40	1.26
67564952--67565017	24	2.8	24	77	15	66	68	0	1	30	0.99
67564959--67565011	22	2.5	21	81	9	63	66	0	0	33	0.92
67575879--67575922	22	2.0	22	82	8	54	65	0	0	34	0.93
67579291--67579351	32	1.9	32	83	6	79	11	4	21	62	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67588412--67588570	77	2.1	77	93	2	275	32	20	24	22	1.98
67589445--67589513	25	2.8	24	76	8	68	63	0	0	36	0.94
67591576--67591891	153	2.1	152	95	0	569	26	20	22	29	1.99
67606533--67606778	32	8.0	31	71	14	161	30	8	13	47	1.72
67606505--67606808	152	2.0	152	98	0	590	29	8	13	49	1.71
67606689--67606782	31	3.0	31	95	3	170	31	9	14	43	1.78
67617494--67617549	28	2.0	28	96	0	103	44	10	19	25	1.83
67624517--67624544	1	28.0	1	100	0	56	100	0	0	0	0.00
67624721--67624745	13	1.9	13	100	0	50	24	8	28	40	1.83
67625355--67625448	44	2.1	44	98	0	179	42	5	13	38	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226