Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 226 of 226
Found at i:68034660 original size:18 final size:18
Alignment explanation
Indices: 68034637--68034723 Score: 97
Period size: 18 Copynumber: 4.8 Consensus size: 18
68034627 CGTTTACGGT
68034637 ACTATTCACGTATACTGC
1 ACTATTCACGTATACTGC
*
68034655 ACTATTCACGTATA-TGGT
1 ACTATTCACGTATACT-GC
68034673 ACTATTCACGTATAC-GAC
1 ACTATTCACGTATACTG-C
* * *
68034691 ACTATTCACATATACGGT
1 ACTATTCACGTATACTGC
*
68034709 ACTGTTCACGTATAC
1 ACTATTCACGTATAC
68034724 AGTAGTTGGG
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
17 2 0.03
18 56 0.95
19 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (18 bp):
ACTATTCACGTATACTGC
Found at i:68034681 original size:36 final size:36
Alignment explanation
Indices: 68034631--68034723 Score: 143
Period size: 36 Copynumber: 2.6 Consensus size: 36
68034621 TACGATCGTT
*
68034631 TACGGTACTATTCACGTATACTG-CACTATTCACGTA
1 TACGGTACTATTCACGTATAC-GACACTATTCACATA
*
68034667 TATGGTACTATTCACGTATACGACACTATTCACATA
1 TACGGTACTATTCACGTATACGACACTATTCACATA
*
68034703 TACGGTACTGTTCACGTATAC
1 TACGGTACTATTCACGTATAC
68034724 AGTAGTTGGG
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
35 1 0.02
36 51 0.98
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (36 bp):
TACGGTACTATTCACGTATACGACACTATTCACATA
Found at i:68040976 original size:12 final size:12
Alignment explanation
Indices: 68040954--68040988 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
68040944 CCACATATGA
68040954 ATTAA-TCCTTC
1 ATTAATTCCTTC
68040965 ATTAATTCCTTC
1 ATTAATTCCTTC
68040977 ATTAATTCCTTC
1 ATTAATTCCTTC
68040989 GTTTAAGGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 5 0.22
12 18 0.78
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.49
Consensus pattern (12 bp):
ATTAATTCCTTC
Found at i:68042624 original size:216 final size:216
Alignment explanation
Indices: 68042284--68042722 Score: 792
Period size: 216 Copynumber: 2.0 Consensus size: 216
68042274 TAAGAGATTA
68042284 CAAGGAGGTTGATTTAGAGGGCATGCAATTGGAACCCCTTAAGAATCTCTCTCATTTGAAGATTG
1 CAAGGAGGTTGATTTAGAGGGCATGCAATTGGAACCCCTTAAGAATCTCTCTCATTTGAAGATTG
68042349 ATAATATTCCAAAGCTGGTGTCTCTCCCCATTTGGCTTCAACATCTTGTTCAATTGAAAACATTA
66 ATAATATTCCAAAGCTGGTGTCTCTCCCCATTTGGCTTCAACATCTTGTTCAATTGAAAACATTA
68042414 AAAATTCATAACTGCAATGGATTGAGGTCACT-CTTTCCTGTGTTCCAACATCTCACTTTCCTTG
131 AAAATTCATAACTGCAATGGATTGAGGTCACTGC-TTCCTGTGTTCCAACATCTCACTTTCCTTG
* *
68042478 AAGATTTTGAAGTAAAGGACTG
195 AAAAGTTTGAAGTAAAGGACTG
68042500 CAAGGAGGTTGATTTAGAGGGCATGCAA-TGCGAACCCCTTAAGAATCTCTCTCATTTGAAGATT
1 CAAGGAGGTTGATTTAGAGGGCATGCAATTG-GAACCCCTTAAGAATCTCTCTCATTTGAAGATT
* *
68042564 GATAATATTCCAAAGCTGGTGTCTCTCCCTATTTGGCTTCAACATCTTGTTCAGTTGAAAACATT
65 GATAATATTCCAAAGCTGGTGTCTCTCCCCATTTGGCTTCAACATCTTGTTCAATTGAAAACATT
* *
68042629 AATAATTCATAACTTCAATGGATTGAGGTCACTGCTTCCTGTGTTCCAACATCTCACTTTCCTTG
130 AAAAATTCATAACTGCAATGGATTGAGGTCACTGCTTCCTGTGTTCCAACATCTCACTTTCCTTG
68042694 AAAAGTTTGAAGTAAAGGACTG
195 AAAAGTTTGAAGTAAAGGACTG
68042716 CAAGGAG
1 CAAGGAG
68042723 CTGGAGTTAT
Statistics
Matches: 215, Mismatches: 6, Indels: 4
0.96 0.03 0.02
Matches are distributed among these distances:
215 2 0.01
216 212 0.99
217 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (216 bp):
CAAGGAGGTTGATTTAGAGGGCATGCAATTGGAACCCCTTAAGAATCTCTCTCATTTGAAGATTG
ATAATATTCCAAAGCTGGTGTCTCTCCCCATTTGGCTTCAACATCTTGTTCAATTGAAAACATTA
AAAATTCATAACTGCAATGGATTGAGGTCACTGCTTCCTGTGTTCCAACATCTCACTTTCCTTGA
AAAGTTTGAAGTAAAGGACTG
Found at i:68046025 original size:25 final size:24
Alignment explanation
Indices: 68045997--68046289 Score: 251
Period size: 25 Copynumber: 11.8 Consensus size: 24
68045987 TGATATAAAT
*
68045997 TTATGTA-TTATGTAAATTATGTAA
1 TTATGTAGTTATGTAAGTTATGT-A
*
68046021 GTTATGTA-TTATGTAAGTTGTGTA
1 -TTATGTAGTTATGTAAGTTATGTA
*
68046045 TTATGAAAGTTATGTAAGTTATGTA
1 TTATG-TAGTTATGTAAGTTATGTA
* *
68046070 TTATGAAAGTTATGTAAGTTGTGTA
1 TTATG-TAGTTATGTAAGTTATGTA
68046095 TTATGTAAGTTATGTAAGTTATGTA
1 TTATGT-AGTTATGTAAGTTATGTA
* *
68046120 TTATGAAAGTTATGTAAGTTGTGTA
1 TTATG-TAGTTATGTAAGTTATGTA
68046145 TTATGTAAGTTATGTAAGTTATGTA
1 TTATGT-AGTTATGTAAGTTATGTA
* *
68046170 TTATGTAAGTTATGTAAGTTGTATA
1 TTATGT-AGTTATGTAAGTTATGTA
*
68046195 TTACGTAAGTTATGT-A-TTATGTAA
1 TTATGT-AGTTATGTAAGTTATGT-A
*
68046219 GTTATGTAAGTTGTGT-A-TTATGTAA
1 -TTATGT-AGTTATGTAAGTTATGT-A
* *
68046244 GTTATGTAAGTTGTGT-A-TAATGTAA
1 -TTATGT-AGTTATGTAAGTTATGT-A
68046269 GTTATGTAAGTTATGTAAGTT
1 -TTATGT-AGTTATGTAAGTT
68046290 GTATATAATG
Statistics
Matches: 238, Mismatches: 21, Indels: 16
0.87 0.08 0.06
Matches are distributed among these distances:
23 9 0.04
24 4 0.02
25 223 0.94
26 1 0.00
27 1 0.00
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47
Consensus pattern (24 bp):
TTATGTAGTTATGTAAGTTATGTA
Found at i:68046061 original size:50 final size:50
Alignment explanation
Indices: 68045997--68046285 Score: 361
Period size: 50 Copynumber: 6.0 Consensus size: 50
68045987 TGATATAAAT
68045997 TTATGT-A-TTATGTAAATTATGTAAGTTATGT-A-TTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTAAATTATGT-A-TTATGTAAGTTATGTAAGTTGTGTA
* * *
68046045 TTATGAAAGTTATGTAAGTTATGTATTATGAAAGTTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTAAATTATGTATTATGTAAGTTATGTAAGTTGTGTA
* *
68046095 TTATGTAAGTTATGTAAGTTATGTATTATGAAAGTTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTAAATTATGTATTATGTAAGTTATGTAAGTTGTGTA
*
68046145 TTATGTAAGTTATGTAAGTTATGTATTATGTAAGTTATGTAAG-T-TG--
1 TTATGTAAGTTATGTAAATTATGTATTATGTAAGTTATGTAAGTTGTGTA
* *
68046191 -TA--T-A-TTACGTAAGTTATGTATTATGTAAGTTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTAAATTATGTATTATGTAAGTTATGTAAGTTGTGTA
* * * *
68046236 TTATGTAAGTTATGTAAGTTGTGTATAATGTAAGTTATGTAAGTTATGTA
1 TTATGTAAGTTATGTAAATTATGTATTATGTAAGTTATGTAAGTTGTGTA
68046286 AGTTGTATAT
Statistics
Matches: 218, Mismatches: 10, Indels: 24
0.87 0.04 0.10
Matches are distributed among these distances:
41 33 0.15
42 2 0.01
43 3 0.01
45 2 0.01
46 2 0.01
48 13 0.06
49 5 0.02
50 158 0.72
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47
Consensus pattern (50 bp):
TTATGTAAGTTATGTAAATTATGTATTATGTAAGTTATGTAAGTTGTGTA
Found at i:68046120 original size:75 final size:74
Alignment explanation
Indices: 68046004--68046285 Score: 350
Period size: 75 Copynumber: 3.9 Consensus size: 74
68045994 AATTTATGTA
* *
68046004 TTATGTAAATTATGTAAGTTATGT-A-TTATGTAAGTTGTGTATTATGAAAGTTATGTAAGTTAT
1 TTATGTAAGTTATGT-A-TTATGTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTT-T
68046067 GTATTATGAAAG
63 GTATTATGAAAG
* * *
68046079 TTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTTATGTATTATGAAAGTTATGTAAGTTGTGT
1 TTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTT-TGT
*
68046144 ATTATGTAAG
65 ATTATGAAAG
* *
68046154 TTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTGTATATTACGTAAG---T-T-A---TGTA
1 TTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTTTGTA
*
68046211 TTATGTAAG
66 TTATGAAAG
* *
68046220 TTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTTGTGTATAATGTAAGTTATGTAAGTTATGT
1 TTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTT-TGT
68046285 A
65 A
68046286 AGTTGTATAT
Statistics
Matches: 182, Mismatches: 14, Indels: 22
0.83 0.06 0.10
Matches are distributed among these distances:
66 59 0.32
69 1 0.01
70 2 0.01
71 2 0.01
72 1 0.01
73 6 0.03
74 2 0.01
75 109 0.60
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.46
Consensus pattern (74 bp):
TTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTTTGTA
TTATGAAAG
Found at i:68046889 original size:19 final size:20
Alignment explanation
Indices: 68046852--68046889 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
68046842 AATTTAATAA
* *
68046852 AAATTTTGATTATGGTGGAC
1 AAATTTTGATTACGATGGAC
68046872 AAATTTT-ATTACGATGGA
1 AAATTTTGATTACGATGGA
68046890 TGACAGTGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 9 0.56
20 7 0.44
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.39
Consensus pattern (20 bp):
AAATTTTGATTACGATGGAC
Found at i:68073513 original size:21 final size:21
Alignment explanation
Indices: 68073487--68073527 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
68073477 ATCTGCTCAA
* *
68073487 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
68073508 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
68073528 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:68093967 original size:31 final size:31
Alignment explanation
Indices: 68093930--68093989 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
68093920 TATATAAATA
68093930 AAATTTTAATTATAATTTAAA-TGTATACAAG
1 AAATTTTAATTATAA-TTAAATTGTATACAAG
* *
68093961 AAATTTTTATTTTAATTAAATTGTATACA
1 AAATTTTAATTATAATTAAATTGTATACA
68093990 TTTATAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 5 0.19
31 21 0.81
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (31 bp):
AAATTTTAATTATAATTAAATTGTATACAAG
Found at i:68095021 original size:19 final size:18
Alignment explanation
Indices: 68094997--68095047 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 18
68094987 CACCTCATTT
68094997 GATCCAATCTCAATGAGTA
1 GATCCAATCTCAATGA-TA
*
68095016 GATCCAATCTC-AT--TT
1 GATCCAATCTCAATGATA
68095031 GATCCAATCTCAATGAT
1 GATCCAATCTCAATGAT
68095048 TAGAGAGCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 12 0.43
16 2 0.07
18 3 0.11
19 11 0.39
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (18 bp):
GATCCAATCTCAATGATA
Found at i:68095036 original size:15 final size:15
Alignment explanation
Indices: 68094990--68095042 Score: 61
Period size: 15 Copynumber: 3.3 Consensus size: 15
68094980 AACAAAACAC
68094990 CTCATTTGATCCAAT
1 CTCATTTGATCCAAT
*
68095005 CTCAATGAGTAGATCCAAT
1 CTC-AT---TTGATCCAAT
68095024 CTCATTTGATCCAAT
1 CTCATTTGATCCAAT
68095039 CTCA
1 CTCA
68095043 ATGATTAGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
15 16 0.50
16 2 0.06
18 2 0.06
19 12 0.38
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.34
Consensus pattern (15 bp):
CTCATTTGATCCAAT
Found at i:68107677 original size:39 final size:39
Alignment explanation
Indices: 68107623--68107700 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
68107613 AATAAAATAA
*
68107623 AAAGTCATGTTGATTGGTGGGAAATGGTCCCTCCATGTT
1 AAAGTAATGTTGATTGGTGGGAAATGGTCCCTCCATGTT
68107662 AAAGTAATGTTGATTGGTGGGAAATGGTCCCTCCATGTT
1 AAAGTAATGTTGATTGGTGGGAAATGGTCCCTCCATGTT
68107701 TACTGTTGGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.33
Consensus pattern (39 bp):
AAAGTAATGTTGATTGGTGGGAAATGGTCCCTCCATGTT
Found at i:68108739 original size:10 final size:10
Alignment explanation
Indices: 68108726--68108767 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
68108716 ATTTTTTTTA
68108726 TTTTTAAAAT
1 TTTTTAAAAT
**
68108736 TTTTTTGAAT
1 TTTTTAAAAT
*
68108746 TTTTT-GAAT
1 TTTTTAAAAT
68108755 TTTTTAAAAT
1 TTTTTAAAAT
68108765 TTT
1 TTT
68108768 AAAAATTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
9 9 0.32
10 19 0.68
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (10 bp):
TTTTTAAAAT
Found at i:68108747 original size:19 final size:18
Alignment explanation
Indices: 68108715--68108771 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
68108705 ATTTTCTTAT
*
68108715 AATTTTTTTTATTTTTAA
1 AATTTTTTTAATTTTTAA
**
68108733 AATTTTTTTGAATTTTTTG
1 AATTTTTTT-AATTTTTAA
* *
68108752 AATTTTTTAAAATTTTAA
1 AATTTTTTTAATTTTTAA
68108770 AA
1 AA
68108772 ATTAATTAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
18 17 0.55
19 14 0.45
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (18 bp):
AATTTTTTTAATTTTTAA
Found at i:68109234 original size:11 final size:11
Alignment explanation
Indices: 68109218--68109257 Score: 80
Period size: 11 Copynumber: 3.6 Consensus size: 11
68109208 TAAACACAAA
68109218 AAAAATATTTT
1 AAAAATATTTT
68109229 AAAAATATTTT
1 AAAAATATTTT
68109240 AAAAATATTTT
1 AAAAATATTTT
68109251 AAAAATA
1 AAAAATA
68109258 AAAAATAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:68109770 original size:21 final size:22
Alignment explanation
Indices: 68109746--68109800 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 22
68109736 ATTCTTTATT
* *
68109746 TAATTTATAAATAACT-TTTTA
1 TAATTTAAAAATAAATCTTTTA
*
68109767 TAATATAAAAATAAATCTTTTA
1 TAATTTAAAAATAAATCTTTTA
68109789 T-ATTTAAAAATA
1 TAATTTAAAAATA
68109801 GTGAAAACAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 23 0.79
22 6 0.21
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (22 bp):
TAATTTAAAAATAAATCTTTTA
Found at i:68111295 original size:14 final size:15
Alignment explanation
Indices: 68111278--68111308 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
68111268 ATAAGCAAAC
68111278 AATAATAAT-AATAA
1 AATAATAATAAATAA
68111292 AATAATAATAAATAA
1 AATAATAATAAATAA
68111307 AA
1 AA
68111309 CGTAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
AATAATAATAAATAA
Found at i:68111620 original size:15 final size:15
Alignment explanation
Indices: 68111600--68111632 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
68111590 TATAGAAGCT
68111600 AGAAAATATTTAAAA
1 AGAAAATATTTAAAA
68111615 AGAAAATATTTAAAA
1 AGAAAATATTTAAAA
68111630 AGA
1 AGA
68111633 GATATAGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (15 bp):
AGAAAATATTTAAAA
Found at i:68111658 original size:26 final size:25
Alignment explanation
Indices: 68111629--68111678 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
68111619 AATATTTAAA
*
68111629 AAGAGATATAGATATATATACATAAT
1 AAGAGATAAAGATATATATA-ATAAT
* *
68111655 AAGATATAAAGATATTTATAATAA
1 AAGAGATAAAGATATATATAATAA
68111679 GGTATGAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (25 bp):
AAGAGATAAAGATATATATAATAAT
Found at i:68112364 original size:129 final size:129
Alignment explanation
Indices: 68112231--68112644 Score: 607
Period size: 129 Copynumber: 3.2 Consensus size: 129
68112221 TTTCAACCTA
* * * * ** *
68112231 CTCCACTGCAACTTCAGAGAGACAA-AGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGAT
1 CTCCACTGCAACTTCAGGGAGATAAGA-CTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGAT
* *
68112295 AGGATCTGTGGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTGATTTCTTTTGTCTG
65 AAGATCTGTGGTTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATTGATTTCTTTTGTCTG
68112360 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
* *
68112425 ATATATGTGGTTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATTGATTTCTTTTGTCTG
66 AGATCTGTGGTTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATTGATTTCTTTTGTCTG
* ** *
68112489 CTCCACTGTAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTATAACTTCAAAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
** ***
68112554 AGATCTGTGGTTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATT-ATCGGCTTCAATCTG
66 AGATCTGTGGTTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATTGAT-TTCTTTTGTCTG
*
68112618 CTCCACTGCAACCTCAGGGAGATAAGA
1 CTCCACTGCAACTTCAGGGAGATAAGA
68112645 TTTGTCATAT
Statistics
Matches: 259, Mismatches: 24, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
128 2 0.01
129 256 0.99
130 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (129 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
AGATCTGTGGTTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATTGATTTCTTTTGTCTG
Found at i:68112586 original size:44 final size:44
Alignment explanation
Indices: 68112283--68112645 Score: 235
Period size: 44 Copynumber: 8.4 Consensus size: 44
68112273 TCTACTGCAG
* * * *
68112283 CTTCAGAGAGATAGGATCTGTGGTTTTAATCCGCTCCACTACAA
1 CTTCAGGGAGATAAGATCTGTGGTTTTAATCTGCTCCACTATAA
* * ** **
68112327 CTTCAGGGAGATAGGAT-TGAT-TTCTTTTGTCTGCTCCACTGCAA
1 CTTCAGGGAGATAAGATCTG-TGGT-TTTAATCTGCTCCACTATAA
* *** * **
68112371 CTTCAGGGAGATAAGA-C--TGGATGCGATCTGCTCTACTGCAA
1 CTTCAGGGAGATAAGATCTGTGGTTTTAATCTGCTCCACTATAA
* * * *
68112412 CTTCAGAGAGATAATATATGTGGTTTTAATCCGCTCCACTATAA
1 CTTCAGGGAGATAAGATCTGTGGTTTTAATCTGCTCCACTATAA
* * ** *
68112456 CTTCAGGGAGATAGGAT-TGAT-TTCTTTTGTCTGCTCCACTGTAA
1 CTTCAGGGAGATAAGATCTG-TGGT-TTTAATCTGCTCCACTATAA
* *** *
68112500 CTTCAGGGAGATAAGA-C--TGGATGCGATCTGCTCTACTATAA
1 CTTCAGGGAGATAAGATCTGTGGTTTTAATCTGCTCCACTATAA
** *
68112541 CTTCAAAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTATAA
1 CTTCAGGGAGATAAGATCTGTGGTTTTAATCTGCTCCACTATAA
* * * * **
68112585 CTTCAGGGAGATAGGAT-TATCGGCTTCAATCTGCTCCACTGCAA
1 CTTCAGGGAGATAAGATCTGT-GGTTTTAATCTGCTCCACTATAA
*
68112629 CCTCAGGGAGATAAGAT
1 CTTCAGGGAGATAAGAT
68112646 TTGTCATATT
Statistics
Matches: 243, Mismatches: 61, Indels: 30
0.73 0.18 0.09
Matches are distributed among these distances:
41 59 0.24
42 1 0.00
43 8 0.03
44 175 0.72
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.31
Consensus pattern (44 bp):
CTTCAGGGAGATAAGATCTGTGGTTTTAATCTGCTCCACTATAA
Found at i:68112714 original size:45 final size:44
Alignment explanation
Indices: 68112147--68112737 Score: 139
Period size: 44 Copynumber: 13.6 Consensus size: 44
68112137 AGTCTACTCT
* * * * *
68112147 ACTGCAACGTCAGGGAGATAAGACTTGT-TGCTTCAACCTGCCCC
1 ACTGCAACCTCAGGGAGATAAGATTTGTAT-CTTCGATCTGCTCC
* * * * * *
68112191 ATTGCAACTTCATGGG-GATAAGGTTTGTTAT-TTCAACCTACTCC
1 ACTGCAACCTCA-GGGAGATAAGATTTG-TATCTTCGATCTGCTCC
* * * * *
68112235 ACTGCAACTTCAGAGAGACAA-AGTTTG-AT-AT-GATCTGCTCT
1 ACTGCAACCTCAGGGAGATAAGA-TTTGTATCTTCGATCTGCTCC
* * * * * * ** *
68112276 ACTGCAGCTTCAGAGAGATAGGATCTGTGGT-TTTAATCCGCTCC
1 ACTGCAACCTCAGGGAGATAAGATTTGT-ATCTTCGATCTGCTCC
* * * * *
68112320 ACTACAACTTCAGGGAGATAGGA-TTGATTTCTTTTG-TCTGCTCC
1 ACTGCAACCTCAGGGAGATAAGATTTG-TATC-TTCGATCTGCTCC
* * * * *
68112364 ACTGCAACTTCAGGGAGATAAGA-CTGGA--TGCGATCTGCTCT
1 ACTGCAACCTCAGGGAGATAAGATTTGTATCTTCGATCTGCTCC
* * * * * ** *
68112405 ACTGCAACTTCAGAGAGATAATATATGTGGT-TTTAATCCGCTCC
1 ACTGCAACCTCAGGGAGATAAGATTTGT-ATCTTCGATCTGCTCC
** * * * *
68112449 ACTATAACTTCAGGGAGATAGGA-TTGATTTCTTTTG-TCTGCTCC
1 ACTGCAACCTCAGGGAGATAAGATTTG-TATC-TTCGATCTGCTCC
* * * * * *
68112493 ACTGTAACTTCAGGGAGATAAGA-CTGGA--TGCGATCTGCTCT
1 ACTGCAACCTCAGGGAGATAAGATTTGTATCTTCGATCTGCTCC
** * ** * * ** *
68112534 ACTATAACTTCAAAGAGATAAGATCTGTGGT-TTTAATCCGCTCC
1 ACTGCAACCTCAGGGAGATAAGATTTGT-ATCTTCGATCTGCTCC
** * * * *
68112578 ACTATAACTTCAGGGAGATAGGATTATCG--GCTTCAATCTGCTCC
1 ACTGCAACCTCAGGGAGATAAGATT-T-GTATCTTCGATCTGCTCC
* * *
68112622 ACTGCAACCTCAGGGAGATAAGATTTGTCATATTCGATTTGCCCC
1 ACTGCAACCTCAGGGAGATAAGATTTGT-ATCTTCGATCTGCTCC
* * * *
68112667 ACTGCATCTTCAGGGGGATAAGACTTTGGT-TCTTCGATCTACTCC
1 ACTGCAACCTCAGGGAGATAAGA-TTT-GTATCTTCGATCTGCTCC
* ** *
68112712 ACTGTAATATCAGGGAGATAGGATTT
1 ACTGCAACCTCAGGGAGATAAGATTT
68112738 CCACTGCACC
Statistics
Matches: 411, Mismatches: 105, Indels: 62
0.71 0.18 0.11
Matches are distributed among these distances:
40 4 0.01
41 82 0.20
42 10 0.02
43 11 0.03
44 228 0.55
45 69 0.17
46 5 0.01
47 2 0.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (44 bp):
ACTGCAACCTCAGGGAGATAAGATTTGTATCTTCGATCTGCTCC
Found at i:68112919 original size:50 final size:49
Alignment explanation
Indices: 68112865--68113017 Score: 128
Period size: 50 Copynumber: 3.1 Consensus size: 49
68112855 GTACCGCCTA
*
68112865 GGAGGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAATCGCAATGTCAG
1 GGAGGTAAGATTCGCTGATGTAGCTTTAATCTTTTTAA-CGCAATGTCAG
* * * * * * ** * * *
68112915 GGAGGCAAGATTCAC-CATTGTGGCTTTAGTCTGTTCCACTGCACTGCCTG
1 GGAGGTAAGATTCGCTGA-TGTAGCTTTAATCTTTTTAAC-GCAATGTCAG
* * *
68112965 GGAGATAAGATTTGCTGATGTAGCTTTAATCTTTTTAACCGTAATGTCAG
1 GGAGGTAAGATTCGCTGATGTAGCTTTAATCTTTTTAA-CGCAATGTCAG
68113015 GGA
1 GGA
68113018 AAGCAAGATT
Statistics
Matches: 73, Mismatches: 26, Indels: 8
0.68 0.24 0.07
Matches are distributed among these distances:
49 1 0.01
50 70 0.96
51 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.34
Consensus pattern (49 bp):
GGAGGTAAGATTCGCTGATGTAGCTTTAATCTTTTTAACGCAATGTCAG
Found at i:68112948 original size:100 final size:99
Alignment explanation
Indices: 68112771--68113096 Score: 406
Period size: 100 Copynumber: 3.3 Consensus size: 99
68112761 AGCTTTAATC
* * * **
68112771 AAGATTCACCGATGTGGCTTTAATCTTTTTAACTGCAATGTGGGGGAAGCAAGATTCACCGA-TG
1 AAGATTCGCTGATGTAGCTTTAATCTTTTTAAC-GCAATGTCAGGGAAGCAAGATTCACC-ATTG
*
68112835 TGG-TGTTAATCTGTTCCACTGTACCGCCTAGGAGGT
64 TGGCT-TTAATCTGTTCCACTGCACCGCCTAGGAGGT
* *
68112871 AAGATTCGCTGCTGTAGCTTTAATCTTTTTAATCGCAATGTCAGGGAGGCAAGATTCACCATTGT
1 AAGATTCGCTGATGTAGCTTTAATCTTTTTAA-CGCAATGTCAGGGAAGCAAGATTCACCATTGT
* * * *
68112936 GGCTTTAGTCTGTTCCACTGCACTGCCTGGGAGAT
65 GGCTTTAATCTGTTCCACTGCACCGCCTAGGAGGT
* *
68112971 AAGATTTGCTGATGTAGCTTTAATCTTTTTAACCGTAATGTCAGGGAAAGCAAGATTCACCATTG
1 AAGATTCGCTGATGTAGCTTTAATCTTTTTAA-CGCAATGTCAGGG-AAGCAAGATTCACCATTG
* * *
68113036 TGGCTTTAATCTGCTCCACTGCATCGCTTAGG-GAGT
64 TGGCTTTAATCTGTTCCACTGCACCGCCTAGGAG-GT
*
68113072 AAGATTCGCTGTTGTAGCTTTAATC
1 AAGATTCGCTGATGTAGCTTTAATC
68113097 AAGATTCACC
Statistics
Matches: 195, Mismatches: 26, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
99 1 0.01
100 125 0.64
101 69 0.35
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (99 bp):
AAGATTCGCTGATGTAGCTTTAATCTTTTTAACGCAATGTCAGGGAAGCAAGATTCACCATTGTG
GCTTTAATCTGTTCCACTGCACCGCCTAGGAGGT
Found at i:68113199 original size:125 final size:124
Alignment explanation
Indices: 68112981--68113324 Score: 523
Period size: 125 Copynumber: 2.7 Consensus size: 124
68112971 AAGATTTGCT
* * * *
68112981 GATGTAGCTTTAATCTTTTTAACCGTAATGTCAGGGAAAGCAAGATTCACC-ATTGTGGCT-TTA
1 GATGTGGCTTTAATCTTTTTAACTGCAATGT-AGGGGAAGCAAGATTCACCGA-TGTGG-TGTTA
* * *
68113044 ATCTGCTCCACTGCA-TCGCTTAGGGAGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACC
63 ATCTGTTCCACTGCACT-GCTT-GGGAGTAAGATTCGCTGCTGTAACTTTAATCAAGATTCACC
68113107 GATGTGGCTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCACCGATGTGGTGTTAATC
1 GATGTGGCTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCACCGATGTGGTGTTAATC
68113172 TGTTCCACTGCACTGCTTGGGAGGTAAGATTCGCTGCTGTAACTTTAATCAAGATTCACC
66 TGTTCCACTGCACTGCTTGGGA-GTAAGATTCGCTGCTGTAACTTTAATCAAGATTCACC
*
68113232 GATGTGGCTTTGATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCACCGATGTGGTGTTAATC
1 GATGTGGCTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCACCGATGTGGTGTTAATC
*
68113297 TGTTCCACTGCACTGCCTGGGAAGTAAG
66 TGTTCCACTGCACTGCTTGGG-AGTAAG
68113325 GCTTTGTTTT
Statistics
Matches: 204, Mismatches: 9, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
124 5 0.02
125 168 0.82
126 31 0.15
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.33
Consensus pattern (124 bp):
GATGTGGCTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCACCGATGTGGTGTTAATC
TGTTCCACTGCACTGCTTGGGAGTAAGATTCGCTGCTGTAACTTTAATCAAGATTCACC
Found at i:68114633 original size:24 final size:24
Alignment explanation
Indices: 68114576--68114627 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
68114566 ATATTTTTAA
* *
68114576 ATTTAGTATTTATTAATATAATAT
1 ATTTAGCATTTATTAAGATAATAT
*
68114600 ATTTAGCATTTATTAGGATAATAT
1 ATTTAGCATTTATTAAGATAATAT
68114624 ATTT
1 ATTT
68114628 GACATTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.52
Consensus pattern (24 bp):
ATTTAGCATTTATTAAGATAATAT
Found at i:68114638 original size:24 final size:24
Alignment explanation
Indices: 68114593--68114638 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
68114583 ATTTATTAAT
*
68114593 ATAATATATTTAGCATTTATTAGG
1 ATAATATATTTAGCATTGATTAGG
68114617 ATAATATATTT-GACATTGATTA
1 ATAATATATTTAG-CATTGATTA
68114639 AAATTAGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.39, C:0.04, G:0.11, T:0.46
Consensus pattern (24 bp):
ATAATATATTTAGCATTGATTAGG
Found at i:68122720 original size:15 final size:15
Alignment explanation
Indices: 68122702--68122736 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
68122692 TGGTTTAAAT
68122702 TTATATATTATCATC
1 TTATATATTATCATC
*
68122717 TTATATATTATTATC
1 TTATATATTATCATC
68122732 -TATAT
1 TTATAT
68122737 TAAAATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATATATTATCATC
Found at i:68124382 original size:3 final size:3
Alignment explanation
Indices: 68124374--68124408 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
68124364 GATTTAGTCC
68124374 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
68124409 CCTATTTGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:68140405 original size:106 final size:106
Alignment explanation
Indices: 68140156--68140458 Score: 401
Period size: 106 Copynumber: 2.8 Consensus size: 106
68140146 TTATCTAAAT
** * ** * * * *
68140156 AAGGCAATATTTTGTTTTTGGAAAATCGAGAAAATATACCCTAACGTACTGGGTTTTGATTTCTT
1 AAGGCAATATTTTGCATTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
68140221 GTTCGACCAAATAGCTAAATATCCTTTCAATAATTTCAAAAC
66 GTTCGACCAAATAGC-AAATATCCTTTCAATAATTTCAAAAC
* * * * *
68140263 AAGGCAATATTTCGCGTTTGGAAATTTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTACTC
1 AAGGCAATATTTTGCATTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* *
68140328 GTTTGACCAAATAGTCAAATATCCTTTCGA-AATTTCAAAAC
66 GTTCGACCAAATAG-CAAATATCCTTTCAATAATTTCAAAAC
* *
68140369 GAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
1 AAGGCAATATTTTGCATTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
*
68140434 GTTCGACTAAATAGCCAAATATCCT
66 GTTCGACCAAATAG-CAAATATCCT
68140459 CTTAAATCTC
Statistics
Matches: 170, Mismatches: 25, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
106 91 0.54
107 78 0.46
108 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (106 bp):
AAGGCAATATTTTGCATTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
GTTCGACCAAATAGCAAATATCCTTTCAATAATTTCAAAAC
Found at i:68145691 original size:33 final size:34
Alignment explanation
Indices: 68145649--68145723 Score: 102
Period size: 33 Copynumber: 2.2 Consensus size: 34
68145639 TTAACATTAC
*
68145649 TTTTATCAAGAATTA-T-ATTTTTATGATAA-AAAG
1 TTTTATCAAGAATTATTAATGTTTAT--TAACAAAG
68145682 TTTTATCAAGAATTATTAATGTTTATTAACAAAG
1 TTTTATCAAGAATTATTAATGTTTATTAACAAAG
68145716 TTTTATCA
1 TTTTATCA
68145724 TTATTGATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
33 18 0.47
34 13 0.34
35 7 0.18
ACGTcount: A:0.40, C:0.05, G:0.08, T:0.47
Consensus pattern (34 bp):
TTTTATCAAGAATTATTAATGTTTATTAACAAAG
Found at i:68152615 original size:47 final size:49
Alignment explanation
Indices: 68152515--68152615 Score: 118
Period size: 49 Copynumber: 2.1 Consensus size: 49
68152505 TAAAATATTT
* * * **
68152515 TAATATAAATATATTTGTAAAAATATTAAGATGATTAGATATAAAATTT
1 TAATAAAAATATATATGTAAAAATATTAAGATGATTAAATATAAAATAA
*
68152564 TAATAAAAATATATATGTAAAATTATTAA-AT-ATTAAAT-TAAAAATAA
1 TAATAAAAATATATATGTAAAAATATTAAGATGATTAAATAT-AAAATAA
68152611 TAATA
1 TAATA
68152616 TGGACAAGTT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
46 1 0.02
47 16 0.36
48 2 0.04
49 26 0.58
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (49 bp):
TAATAAAAATATATATGTAAAAATATTAAGATGATTAAATATAAAATAA
Found at i:68152952 original size:3 final size:3
Alignment explanation
Indices: 68152940--68152975 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
68152930 TGCTATTTTG
68152940 TTA TTA -TA TTA TTA TTA TTA TTA TT- TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
68152976 GTTTAGATAG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 4 0.13
3 27 0.87
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:68152959 original size:14 final size:13
Alignment explanation
Indices: 68152933--68152974 Score: 57
Period size: 14 Copynumber: 3.1 Consensus size: 13
68152923 GTTTTACTGC
*
68152933 TATTTTGTTATTA
1 TATTTTATTATTA
68152946 TATTATTATTATTA
1 TATT-TTATTATTA
68152960 TTATTTTATTATTA
1 -TATTTTATTATTA
68152974 T
1 T
68152975 TGTTTAGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
13 5 0.19
14 17 0.65
15 4 0.15
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (13 bp):
TATTTTATTATTA
Found at i:68152962 original size:17 final size:17
Alignment explanation
Indices: 68152940--68152975 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
68152930 TGCTATTTTG
68152940 TTATTATATTATTATTA
1 TTATTATATTATTATTA
*
68152957 TTATTATTTTATTATTA
1 TTATTATATTATTATTA
68152974 TT
1 TT
68152976 GTTTAGATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTATTATATTATTATTA
Found at i:68153641 original size:44 final size:44
Alignment explanation
Indices: 68153578--68153690 Score: 199
Period size: 44 Copynumber: 2.6 Consensus size: 44
68153568 CGTTACACGG
*
68153578 TGGAATCAGCACTTAGCAACCACCTCATGTTCAAAGGATCCCAC
1 TGGAATCAGCACTTAGCAACCACCTCATGTTCAAAGGATCCCAA
68153622 TGGAATCAGCACTTAGCAACCACCTCATGTTCAAAGGATCCCAA
1 TGGAATCAGCACTTAGCAACCACCTCATGTTCAAAGGATCCCAA
* *
68153666 TGGAATCAACACTTAGAAACCACCT
1 TGGAATCAGCACTTAGCAACCACCT
68153691 TATAATCAAT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 66 1.00
ACGTcount: A:0.35, C:0.30, G:0.15, T:0.20
Consensus pattern (44 bp):
TGGAATCAGCACTTAGCAACCACCTCATGTTCAAAGGATCCCAA
Found at i:68153776 original size:84 final size:83
Alignment explanation
Indices: 68153666--68153857 Score: 280
Period size: 84 Copynumber: 2.3 Consensus size: 83
68153656 AGGATCCCAA
* *
68153666 TGGAATCAACACTTAGAAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCCT
1 TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCCT
68153731 TTCACAATCAAGGATACGG
66 TT-ACAATCAAGGATACGG
*
68153750 TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGTAACCCCT
1 TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCCT
*** * *
68153815 TTTTGATCAATGATTCGG
66 TTACAATCAAGGATACGG
*
68153833 -GGAATCTGCACTTAGCAACC-CCTTA
1 TGGAATCAGCACTTAGCAACCACCTTA
68153858 CATTCAAAGA
Statistics
Matches: 99, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
81 5 0.05
82 19 0.19
83 11 0.11
84 64 0.65
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.23
Consensus pattern (83 bp):
TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCCT
TTACAATCAAGGATACGG
Found at i:68153824 original size:41 final size:41
Alignment explanation
Indices: 68153667--68153856 Score: 222
Period size: 41 Copynumber: 4.6 Consensus size: 41
68153657 GGATCCCAAT
* * *
68153667 GGAATCAACACTTAGAAACCACC-TTATAATCAATGATACGG
1 GGAATCAGCACATAGCAACC-CCTTTATAATCAATGATACGG
* *
68153708 GGAATCAGCACATAGCAACCCCTTTCACAATCAAGGATACGG
1 GGAATCAGCACATAGCAACCCCTTT-ATAATCAATGATACGG
*
68153750 TGGAATCAGCACTTAGCAACCACC-TTATAATCAATGATACGG
1 -GGAATCAGCACATAGCAACC-CCTTTATAATCAATGATACGG
* * * *
68153792 GGAATCAGCACATAGTAACCCCTTTTTGATCAATGATTCGG
1 GGAATCAGCACATAGCAACCCCTTTATAATCAATGATACGG
* *
68153833 GGAATCTGCACTTAGCAACCCCTT
1 GGAATCAGCACATAGCAACCCCTT
68153857 ACATTCAAAG
Statistics
Matches: 128, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
40 4 0.03
41 73 0.57
42 28 0.22
43 21 0.16
44 2 0.02
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.23
Consensus pattern (41 bp):
GGAATCAGCACATAGCAACCCCTTTATAATCAATGATACGG
Found at i:68171878 original size:3 final size:3
Alignment explanation
Indices: 68171870--68171918 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
68171860 TTAGTATGGA
68171870 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
68171918 A
1 A
68171919 CGACGACAAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.35, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:68172831 original size:144 final size:144
Alignment explanation
Indices: 68172588--68172870 Score: 469
Period size: 144 Copynumber: 2.0 Consensus size: 144
68172578 GCCTCAAAAA
*
68172588 ATTAACAATAGGAGATTGCAAGGAGGTTGATTTCGAGGGCATGCAATGGGAACTCCTTAAGAATC
1 ATTAACAATAGGAGATTGCAAGGAGGTTGATTTAGAGGGCATGCAATGGGAACTCCTTAAGAATC
* ** * *
68172653 TCTCTCATTTGGAGATTAATAATAATCCGCAGCTGGTGTCTCTCCCCTTTTGGCTTCAACATCTT
66 TCTCTCATTTGGAGATTAAGAATAATCCAAAGCTGGTGTCTCTCCCCATTGGGCTTCAACATCTT
68172718 GTTCAATTGAAAGG
131 GTTCAATTGAAAGG
*
68172732 ATTAACAGTAGGAGATTGCAAGGAGGTTGATTTAGAGGGCATGCAATGGGAAGC-CCTTAAGAAT
1 ATTAACAATAGGAGATTGCAAGGAGGTTGATTTAGAGGGCATGCAATGGGAA-CTCCTTAAGAAT
* *
68172796 CTCTCTCGTTTGGAGATTAAGAATATTCCAAAGCTGGTGTCTCTCCCCATTGGGCTTCAACATCT
65 CTCTCTCATTTGGAGATTAAGAATAATCCAAAGCTGGTGTCTCTCCCCATTGGGCTTCAACATCT
68172861 TGTTCAATTG
130 TGTTCAATTG
68172871 GAAACATTAG
Statistics
Matches: 129, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
144 128 0.99
145 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (144 bp):
ATTAACAATAGGAGATTGCAAGGAGGTTGATTTAGAGGGCATGCAATGGGAACTCCTTAAGAATC
TCTCTCATTTGGAGATTAAGAATAATCCAAAGCTGGTGTCTCTCCCCATTGGGCTTCAACATCTT
GTTCAATTGAAAGG
Found at i:68176576 original size:29 final size:29
Alignment explanation
Indices: 68176534--68176598 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
68176524 TATCATTTAA
*
68176534 TGAAGGCGCTTCAGTACCTAATGACTGAT
1 TGAATGCGCTTCAGTACCTAATGACTGAT
68176563 TGAATGCGCTTCAGTACCTAATGACTGAT
1 TGAATGCGCTTCAGTACCTAATGACTGAT
68176592 TGAATGC
1 TGAATGC
68176599 TTAGCTTAGC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (29 bp):
TGAATGCGCTTCAGTACCTAATGACTGAT
Found at i:68179013 original size:17 final size:18
Alignment explanation
Indices: 68178991--68179024 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
68178981 TTAAGGGTTC
68178991 AATTTAAAT-TAGTTTTT
1 AATTTAAATCTAGTTTTT
*
68179008 AATTTAATTCTAGTTTT
1 AATTTAAATCTAGTTTT
68179025 CGATTTCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.59
Consensus pattern (18 bp):
AATTTAAATCTAGTTTTT
Found at i:68185440 original size:19 final size:19
Alignment explanation
Indices: 68185416--68185475 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
68185406 ATTGAAGAGC
68185416 AGAAGCAATTTATGCCAAA
1 AGAAGCAATTTATGCCAAA
* * **
68185435 AGAAGC-ATTGAAG--AGC
1 AGAAGCAATTTATGCCAAA
*
68185451 GGAAGCAATTTATGCCAAA
1 AGAAGCAATTTATGCCAAA
68185470 AGAAGC
1 AGAAGC
68185476 TAAGGCAAAA
Statistics
Matches: 28, Mismatches: 10, Indels: 6
0.64 0.23 0.14
Matches are distributed among these distances:
16 6 0.21
17 5 0.18
18 5 0.18
19 12 0.43
ACGTcount: A:0.45, C:0.15, G:0.23, T:0.17
Consensus pattern (19 bp):
AGAAGCAATTTATGCCAAA
Found at i:68185456 original size:35 final size:35
Alignment explanation
Indices: 68185406--68185475 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
68185396 CAAGGCACCA
68185406 ATTGAAGAGCAGAAGCAATTTATGCCAAAAGAAGC
1 ATTGAAGAGCAGAAGCAATTTATGCCAAAAGAAGC
*
68185441 ATTGAAGAGCGGAAGCAATTTATGCCAAAAGAAGC
1 ATTGAAGAGCAGAAGCAATTTATGCCAAAAGAAGC
68185476 TAAGGCAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.44, C:0.14, G:0.24, T:0.17
Consensus pattern (35 bp):
ATTGAAGAGCAGAAGCAATTTATGCCAAAAGAAGC
Found at i:68189600 original size:14 final size:12
Alignment explanation
Indices: 68189564--68189591 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
68189554 ATATATATTT
68189564 AAAAATAATATA
1 AAAAATAATATA
68189576 AAAAATAATATA
1 AAAAATAATATA
68189588 AAAA
1 AAAA
68189592 TTTTAATATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAAATAATATA
Found at i:68193899 original size:20 final size:20
Alignment explanation
Indices: 68193876--68193913 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
68193866 CACGTGTATT
68193876 AAATAAAAATTTAATAATTA
1 AAATAAAAATTTAATAATTA
*
68193896 AAATATAAATTTAATAAT
1 AAATAAAAATTTAATAAT
68193914 AATTTAGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
AAATAAAAATTTAATAATTA
Found at i:68201418 original size:22 final size:23
Alignment explanation
Indices: 68201374--68201418 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
68201364 CAATGTTATG
**
68201374 TTTATATTTAAAATATATTATAT
1 TTTATATTTAAAATATAAAATAT
*
68201397 TTTATA-TTAAATTATAAAATAT
1 TTTATATTTAAAATATAAAATAT
68201419 ACATAAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
TTTATATTTAAAATATAAAATAT
Found at i:68203306 original size:17 final size:17
Alignment explanation
Indices: 68203284--68203317 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
68203274 ATCCACTAAT
*
68203284 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
68203301 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
68203318 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:68207935 original size:17 final size:17
Alignment explanation
Indices: 68207913--68207946 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
68207903 ATCCACTAAT
*
68207913 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
68207930 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
68207947 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:68218208 original size:68 final size:68
Alignment explanation
Indices: 68218061--68218197 Score: 274
Period size: 68 Copynumber: 2.0 Consensus size: 68
68218051 ATATTCCAGC
68218061 AAAACAAAAATGGTAATATATGTCATCAGTTTCATTATAATTTCCAATTGATCGGATATAAATTA
1 AAAACAAAAATGGTAATATATGTCATCAGTTTCATTATAATTTCCAATTGATCGGATATAAATTA
68218126 TAT
66 TAT
68218129 AAAACAAAAATGGTAATATATGTCATCAGTTTCATTATAATTTCCAATTGATCGGATATAAATTA
1 AAAACAAAAATGGTAATATATGTCATCAGTTTCATTATAATTTCCAATTGATCGGATATAAATTA
68218194 TAT
66 TAT
68218197 A
1 A
68218198 TATGCCAAAT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.36
Consensus pattern (68 bp):
AAAACAAAAATGGTAATATATGTCATCAGTTTCATTATAATTTCCAATTGATCGGATATAAATTA
TAT
Found at i:68218527 original size:3 final size:3
Alignment explanation
Indices: 68218519--68218546 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
68218509 TACCATTACA
68218519 GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT G
68218547 CTCAATGTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:68221024 original size:18 final size:20
Alignment explanation
Indices: 68221003--68221043 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
68220993 AAATTTATCG
68221003 TTTTAGTAAAAT-A-TAATT
1 TTTTAGTAAAATAATTAATT
*
68221021 TTTTATTAAAATAATTAATT
1 TTTTAGTAAAATAATTAATT
68221041 TTT
1 TTT
68221044 GAGGTAACCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 11 0.55
19 1 0.05
20 8 0.40
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
TTTTAGTAAAATAATTAATT
Found at i:68222786 original size:17 final size:17
Alignment explanation
Indices: 68222764--68222797 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
68222754 ATCCACTAAT
*
68222764 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
68222781 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
68222798 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:68227426 original size:17 final size:17
Alignment explanation
Indices: 68227404--68227437 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
68227394 ATCCACTAAT
*
68227404 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
68227421 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
68227438 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:68233396 original size:24 final size:24
Alignment explanation
Indices: 68233350--68233396 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
68233340 GTACACGCTA
*
68233350 TTATTTTATTTTTCATTTCATTTT
1 TTATTTTATTTTTCAATTCATTTT
*
68233374 TTATTTATATTTTT-AATTGATTT
1 TTATTT-TATTTTTCAATTCATTT
68233397 AAGGAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.72
Consensus pattern (24 bp):
TTATTTTATTTTTCAATTCATTTT
Found at i:68238640 original size:29 final size:30
Alignment explanation
Indices: 68238597--68238660 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
68238587 AATTTGGAAT
*
68238597 TTTAGTCATTATACTTTT-A-TTTTCAAGAA
1 TTTAGTCATTATACTTTTCAGATTTCAA-AA
* *
68238626 TTTAGTTATTTTACTTTTCAGATTTCAAAA
1 TTTAGTCATTATACTTTTCAGATTTCAAAA
68238656 TTTAG
1 TTTAG
68238661 GCCCAATTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 16 0.53
30 8 0.27
31 6 0.20
ACGTcount: A:0.30, C:0.09, G:0.08, T:0.53
Consensus pattern (30 bp):
TTTAGTCATTATACTTTTCAGATTTCAAAA
Found at i:68241751 original size:76 final size:76
Alignment explanation
Indices: 68241660--68241812 Score: 306
Period size: 76 Copynumber: 2.0 Consensus size: 76
68241650 GAGCCTGGAA
68241660 ATTATAAATGCCAACATGGAATATGTTAAAATTGATGTCATTTAGACTGAGCAGTGTCCAAAGTG
1 ATTATAAATGCCAACATGGAATATGTTAAAATTGATGTCATTTAGACTGAGCAGTGTCCAAAGTG
68241725 TAGAAACACTT
66 TAGAAACACTT
68241736 ATTATAAATGCCAACATGGAATATGTTAAAATTGATGTCATTTAGACTGAGCAGTGTCCAAAGTG
1 ATTATAAATGCCAACATGGAATATGTTAAAATTGATGTCATTTAGACTGAGCAGTGTCCAAAGTG
68241801 TAGAAACACTT
66 TAGAAACACTT
68241812 A
1 A
68241813 CTGTTGCTAA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 77 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (76 bp):
ATTATAAATGCCAACATGGAATATGTTAAAATTGATGTCATTTAGACTGAGCAGTGTCCAAAGTG
TAGAAACACTT
Found at i:68244226 original size:29 final size:28
Alignment explanation
Indices: 68244194--68244265 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 28
68244184 TATAGACTGT
*
68244194 ATCAAATTAGTCC-ATTTGTTATTAAATGA
1 ATCAAATTAGTCCGA--TATTATTAAATGA
*
68244223 ATCAACTTAGTTCCGATATTATTAAATGA
1 ATCAAATTAG-TCCGATATTATTAAATGA
*
68244252 ATTAAATTAGTCCG
1 ATCAAATTAGTCCG
68244266 CATAATTAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 4 0.11
29 29 0.78
30 3 0.08
31 1 0.03
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39
Consensus pattern (28 bp):
ATCAAATTAGTCCGATATTATTAAATGA
Found at i:68269020 original size:29 final size:32
Alignment explanation
Indices: 68268987--68269057 Score: 76
Period size: 33 Copynumber: 2.2 Consensus size: 32
68268977 ATACATAAAT
*
68268987 TTTGATTTGGTGCA-AT-TATCCATATGAAAC
1 TTTGATTTGGTGCATATATATACATATGAAAC
* *
68269017 -TTGAATTGTGGTTCATATATATATATATGAAAC
1 TTTG-ATT-TGGTGCATATATATACATATGAAAC
68269050 TTTGATTT
1 TTTGATTT
68269058 TCATTCAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
29 3 0.09
30 3 0.09
31 6 0.18
32 3 0.09
33 15 0.45
34 3 0.09
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.45
Consensus pattern (32 bp):
TTTGATTTGGTGCATATATATACATATGAAAC
Found at i:68272353 original size:19 final size:21
Alignment explanation
Indices: 68272329--68272369 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
68272319 ACACTTCACT
68272329 TTCTTTGC-TTTC-TTTTCTC
1 TTCTTTGCTTTTCATTTTCTC
*
68272348 TTCTTTTCTTTTCATTTTCTC
1 TTCTTTGCTTTTCATTTTCTC
68272369 T
1 T
68272370 CGATTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 4 0.21
21 8 0.42
ACGTcount: A:0.02, C:0.24, G:0.02, T:0.71
Consensus pattern (21 bp):
TTCTTTGCTTTTCATTTTCTC
Found at i:68273121 original size:29 final size:29
Alignment explanation
Indices: 68273089--68273165 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 29
68273079 CAAATTTGGG
* *
68273089 AAATTCTCATTAAGCCTTCAAT-TTTTTGA
1 AAATTTTCATTAAGCCCTCAATCTTTTT-A
* *
68273118 AAATTTTAATTAAACTCCTCAATCTTTTTA
1 AAATTTTCATTAAGC-CCTCAATCTTTTTA
*
68273148 AAATTTTCACTAAGCCCT
1 AAATTTTCATTAAGCCCT
68273166 TTAATAGTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
29 15 0.38
30 19 0.49
31 5 0.13
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (29 bp):
AAATTTTCATTAAGCCCTCAATCTTTTTA
Found at i:68275848 original size:120 final size:120
Alignment explanation
Indices: 68275635--68275880 Score: 465
Period size: 120 Copynumber: 2.0 Consensus size: 120
68275625 CGTTGGAATC
* * *
68275635 ATCATCGATTGGTTTTGTCGTCCTCCACCAACTCTTCATATTCGGACAGTCCCAGAGCCAAAGTT
1 ATCATCAATTGGTTTTGCCGTCCTCCACCAACTCTTCATATTCGGACAGTCCCAGAGCCAAAGAT
68275700 GCTTAAGTGATGGGAAGAATGATTGTGGTTCTCCTTGACTTCCTTTTGGGCTATT
66 GCTTAAGTGATGGGAAGAATGATTGTGGTTCTCCTTGACTTCCTTTTGGGCTATT
68275755 ATCATCAATTGGTTTTGCCGTCCTCCACCAACTCTTCATATTCGGACAGTCCCAGAGCCAAAGAT
1 ATCATCAATTGGTTTTGCCGTCCTCCACCAACTCTTCATATTCGGACAGTCCCAGAGCCAAAGAT
68275820 GCTTAAGTGATGGGAAGAATGATTGTGGTTCTCCTTGACTTCCTTTTGGGCTATT
66 GCTTAAGTGATGGGAAGAATGATTGTGGTTCTCCTTGACTTCCTTTTGGGCTATT
68275875 ATCATC
1 ATCATC
68275881 CATGTACTCC
Statistics
Matches: 123, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 123 1.00
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (120 bp):
ATCATCAATTGGTTTTGCCGTCCTCCACCAACTCTTCATATTCGGACAGTCCCAGAGCCAAAGAT
GCTTAAGTGATGGGAAGAATGATTGTGGTTCTCCTTGACTTCCTTTTGGGCTATT
Found at i:68279550 original size:21 final size:18
Alignment explanation
Indices: 68279526--68279573 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 18
68279516 TTTCTTATAA
68279526 TTTTTTTAATTTTTAAAATAT
1 TTTTTTTAATTTTT--AAT-T
*
68279547 TTTTTTGAATTTTTAATT
1 TTTTTTTAATTTTTAATT
68279565 TTTTTTTAA
1 TTTTTTTAA
68279574 AAATAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 9 0.36
19 3 0.12
21 13 0.52
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (18 bp):
TTTTTTTAATTTTTAATT
Found at i:68280160 original size:20 final size:20
Alignment explanation
Indices: 68280137--68280184 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
68280127 TTTAATTTAT
*
68280137 AAATAAT-TTTTATAATATAA
1 AAATAATCTATTAT-ATATAA
*
68280157 AAATAAATCTATTATATTTAA
1 AAAT-AATCTATTATATATAA
68280178 AAATAAT
1 AAATAAT
68280185 GAAAATAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 7 0.29
21 12 0.50
22 5 0.21
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (20 bp):
AAATAATCTATTATATATAA
Found at i:68296353 original size:31 final size:30
Alignment explanation
Indices: 68296317--68296389 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 30
68296307 ATTAATAATG
*
68296317 ATAAAATTATAATTTAA-TCCTCTAAAAATTT
1 ATAAAAATATAATTTAACT-CTCTAAAAA-TT
* *
68296348 ATAAAAAAATTAATTTAACTCTTTAAAAATT
1 ATAAAAATA-TAATTTAACTCTCTAAAAATT
68296379 ATAAAAATATA
1 ATAAAAATATA
68296390 CTACTATAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
30 2 0.06
31 17 0.47
32 16 0.44
33 1 0.03
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (30 bp):
ATAAAAATATAATTTAACTCTCTAAAAATT
Found at i:68296364 original size:32 final size:31
Alignment explanation
Indices: 68296326--68296385 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
68296316 GATAAAATTA
68296326 TAATTTAA-TCCTCTAAAAATTTATAAAAAAAT
1 TAATTTAACT-CTCTAAAAA-TTATAAAAAAAT
*
68296358 TAATTTAACTCTTTAAAAATTATAAAAA
1 TAATTTAACTCTCTAAAAATTATAAAAA
68296386 TATACTACTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 9 0.35
32 16 0.62
33 1 0.04
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.38
Consensus pattern (31 bp):
TAATTTAACTCTCTAAAAATTATAAAAAAAT
Found at i:68303279 original size:9 final size:9
Alignment explanation
Indices: 68303265--68303291 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
68303255 TTTCTTATTA
68303265 TTTTTTAAT
1 TTTTTTAAT
68303274 TTTTTTAAT
1 TTTTTTAAT
68303283 TTTTTTAAT
1 TTTTTTAAT
68303292 GTTTAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTTTAAT
Found at i:68303304 original size:20 final size:21
Alignment explanation
Indices: 68303281--68303321 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
68303271 AATTTTTTTA
*
68303281 ATTTTTTTAATG-TTTAAAAT
1 ATTTTTTAAATGTTTTAAAAT
68303301 ATTTTTTAAATGTTTTAAAAT
1 ATTTTTTAAATGTTTTAAAAT
68303322 TTTAAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.59
Consensus pattern (21 bp):
ATTTTTTAAATGTTTTAAAAT
Found at i:68304923 original size:15 final size:15
Alignment explanation
Indices: 68304903--68304935 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
68304893 AATTCTAATG
68304903 TAATAAA-AGTAAAAA
1 TAATAAAGA-TAAAAA
68304918 TAATAAAGATAAAAA
1 TAATAAAGATAAAAA
68304933 TAA
1 TAA
68304936 GCAAAAAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 16 0.94
16 1 0.06
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (15 bp):
TAATAAAGATAAAAA
Done.