Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 23 of 226
Found at i:8155992 original size:100 final size:100
Alignment explanation
Indices: 8155816--8156001 Score: 300
Period size: 100 Copynumber: 1.9 Consensus size: 100
8155806 AATCACCCAG
* * *
8155816 CACTTATTACATGCTCAACTGTAACAACTGTGCATCAATGACGAGCAGTATTAAAGTTCCAAAAT
1 CACTTAATACATGCTCAACTGTAACAACTGAGCATCAATGACGAGCAGTATTAAACTTCCAAAAT
*
8155881 GTATTGCTAAATCCTAGTAAGCAAGTTAGCCAAGC
66 GTATTGATAAATCCTAGTAAGCAAGTTAGCCAAGC
* * *
8155916 CACTTAATACATGCTCAACTGTAATAACTGAGCATCAGTGACGAGCAGTATTAAACTTCCAATAT
1 CACTTAATACATGCTCAACTGTAACAACTGAGCATCAATGACGAGCAGTATTAAACTTCCAAAAT
*
8155981 GTATTGATAAATCTTAGTAAG
66 GTATTGATAAATCCTAGTAAG
8156002 TTAGCCAAGC
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 78 1.00
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (100 bp):
CACTTAATACATGCTCAACTGTAACAACTGAGCATCAATGACGAGCAGTATTAAACTTCCAAAAT
GTATTGATAAATCCTAGTAAGCAAGTTAGCCAAGC
Found at i:8159975 original size:375 final size:375
Alignment explanation
Indices: 8159285--8160037 Score: 1488
Period size: 375 Copynumber: 2.0 Consensus size: 375
8159275 ACCAAGTGAG
8159285 TTAATCCTTGCCTTTTTCTTGAAATTTTTGTGTTGCTAAGACTTTTACAACTAGGTCCTATTACT
1 TTAATCCTTGCCTTTTTCTTGAAATTTTTGTGTTGCTAAGACTTTTACAACTAGGTCCTATTACT
8159350 AAATTCATTAGTTTTTGATTTTATGAATGAAATTGAAAGTTTCTATGAATATGTGCCGGAATTTT
66 AAATTCATTAGTTTTTGATTTTATGAATGAAATTGAAAGTTTCTATGAATATGTGCCGGAATTTT
8159415 ATGATGAAATAGCATGAAATTGAAGCTTTAATTTGTTTATGAGATGATTTTATTAGGTAATTTCA
131 ATGATGAAATAGCATGAAATTGAAGCTTTAATTTGTTTATGAGATGATTTTATTAGGTAATTTCA
8159480 ATAGAAATTGATTTGTAGAACCTAATTGTGAAAAAGTTTGGAATTAAAGTCTAGTGCTAAAATTC
196 ATAGAAATTGATTTGTAGAACCTAATTGTGAAAAAGTTTGGAATTAAAGTCTAGTGCTAAAATTC
8159545 TGATTTCCAAAGGTTATAAAGTAGTTTAAAGTGATAGAATAAAGTGTTAATTTATAAAAATAAGC
261 TGATTTCCAAAGGTTATAAAGTAGTTTAAAGTGATAGAATAAAGTGTTAATTTATAAAAATAAGC
8159610 TCAATTGAGAGGTTAATTAAGTAGGGATGAAATTATCATTTATTGAAAGC
326 TCAATTGAGAGGTTAATTAAGTAGGGATGAAATTATCATTTATTGAAAGC
*
8159660 TTAATCCTTGCCTTTTTCTTGTAATTTTTGTGTTGCTAAGACTTTTACAACTAGGTCCTATTACT
1 TTAATCCTTGCCTTTTTCTTGAAATTTTTGTGTTGCTAAGACTTTTACAACTAGGTCCTATTACT
8159725 AAATTCATTAGTTTTTGATTTTATGAATGAAATTGAAAGTTTCTATGAATATGTGCCGGAATTTT
66 AAATTCATTAGTTTTTGATTTTATGAATGAAATTGAAAGTTTCTATGAATATGTGCCGGAATTTT
8159790 ATGATGAAATAGCATGAAATTGAAGCTTTAATTTGTTTATGAGATGATTTTATTAGGTAATTTCA
131 ATGATGAAATAGCATGAAATTGAAGCTTTAATTTGTTTATGAGATGATTTTATTAGGTAATTTCA
8159855 ATAGAAATTGATTTGTAGAACCTAATTGTGAAAAAGTTTGGAATTAAAGTCTAGTGCTAAAATTC
196 ATAGAAATTGATTTGTAGAACCTAATTGTGAAAAAGTTTGGAATTAAAGTCTAGTGCTAAAATTC
8159920 TGATTTCCAAAGGTTATAAAGTAGTTTAAAGTGATAGAATAAAGTGTTAATTTATAAAAATAAGC
261 TGATTTCCAAAGGTTATAAAGTAGTTTAAAGTGATAGAATAAAGTGTTAATTTATAAAAATAAGC
*
8159985 TCAATTGAGAGGTTAATTAAGTAGGGATGAAATTATCATTTTTTGAAAGC
326 TCAATTGAGAGGTTAATTAAGTAGGGATGAAATTATCATTTATTGAAAGC
8160035 TTA
1 TTA
8160038 GGGGAAAAAT
Statistics
Matches: 376, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
375 376 1.00
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.40
Consensus pattern (375 bp):
TTAATCCTTGCCTTTTTCTTGAAATTTTTGTGTTGCTAAGACTTTTACAACTAGGTCCTATTACT
AAATTCATTAGTTTTTGATTTTATGAATGAAATTGAAAGTTTCTATGAATATGTGCCGGAATTTT
ATGATGAAATAGCATGAAATTGAAGCTTTAATTTGTTTATGAGATGATTTTATTAGGTAATTTCA
ATAGAAATTGATTTGTAGAACCTAATTGTGAAAAAGTTTGGAATTAAAGTCTAGTGCTAAAATTC
TGATTTCCAAAGGTTATAAAGTAGTTTAAAGTGATAGAATAAAGTGTTAATTTATAAAAATAAGC
TCAATTGAGAGGTTAATTAAGTAGGGATGAAATTATCATTTATTGAAAGC
Found at i:8161093 original size:59 final size:59
Alignment explanation
Indices: 8161020--8161157 Score: 267
Period size: 59 Copynumber: 2.3 Consensus size: 59
8161010 TAGGGTCTGA
*
8161020 ATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTGTCATTGCAGGGG
1 ATTTAGCCTGGACTGGTAATTCAAATCCAAGCTCATTAGAGTAATTGTCATTGCAGGGG
8161079 ATTTAGCCTGGACTGGTAATTCAAATCCAAGCTCATTAGAGTAATTGTCATTGCAGGGG
1 ATTTAGCCTGGACTGGTAATTCAAATCCAAGCTCATTAGAGTAATTGTCATTGCAGGGG
8161138 ATTTAGCCTGGACTGGTAAT
1 ATTTAGCCTGGACTGGTAAT
8161158 CCCGCTGTAA
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
59 78 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (59 bp):
ATTTAGCCTGGACTGGTAATTCAAATCCAAGCTCATTAGAGTAATTGTCATTGCAGGGG
Found at i:8163467 original size:14 final size:15
Alignment explanation
Indices: 8163434--8163465 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8163424 TATGCATGTA
*
8163434 AAATATAAAAGACAT
1 AAATAAAAAAGACAT
8163449 AAATAAAAAAGACAT
1 AAATAAAAAAGACAT
8163464 AA
1 AA
8163466 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.72, C:0.06, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATAAAAAAGACAT
Found at i:8163671 original size:28 final size:28
Alignment explanation
Indices: 8163639--8163698 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
8163629 TTTCAACATA
8163639 TCTTATCACATTACATTTACTTAATTAC
1 TCTTATCACATTACATTTACTTAATTAC
8163667 TCTTATCACATTACATTTACTTAATTAC
1 TCTTATCACATTACATTTACTTAATTAC
8163695 TCTT
1 TCTT
8163699 CCTTGCTCGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.30, C:0.22, G:0.00, T:0.48
Consensus pattern (28 bp):
TCTTATCACATTACATTTACTTAATTAC
Found at i:8163679 original size:14 final size:15
Alignment explanation
Indices: 8163638--8163682 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
8163628 ATTTCAACAT
8163638 ATCTTATCACATTAC
1 ATCTTATCACATTAC
*
8163653 AT-TTACTTA-ATTAC
1 ATCTTA-TCACATTAC
8163667 -TCTTATCACATTAC
1 ATCTTATCACATTAC
8163681 AT
1 AT
8163683 TTACTTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 8
0.71 0.06 0.24
Matches are distributed among these distances:
13 3 0.12
14 16 0.67
15 5 0.21
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.44
Consensus pattern (15 bp):
ATCTTATCACATTAC
Found at i:8163693 original size:14 final size:14
Alignment explanation
Indices: 8163648--8163694 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
8163638 ATCTTATCAC
8163648 ATTACATTTACTTA
1 ATTACATTTACTTA
*
8163662 ATTAC-TCTTA-TCA
1 ATTACAT-TTACTTA
8163675 CATTACATTTACTTA
1 -ATTACATTTACTTA
8163690 ATTAC
1 ATTAC
8163695 TCTTCCTTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
13 3 0.11
14 21 0.78
15 3 0.11
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (14 bp):
ATTACATTTACTTA
Found at i:8164024 original size:32 final size:32
Alignment explanation
Indices: 8163983--8164061 Score: 97
Period size: 32 Copynumber: 2.5 Consensus size: 32
8163973 TTTTAACATT
*
8163983 ATATATCATCCACAAAAGA-CTAATCATCAATC
1 ATATCTCATCCACAAAAGATC-AATCATCAATC
* *
8164015 ATATCTCATCCACAAGAGATCAATCATCAATT
1 ATATCTCATCCACAAAAGATCAATCATCAATC
* *
8164047 ATATCCCGTCCACAA
1 ATATCTCATCCACAA
8164062 GGGGCTAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
32 40 0.98
33 1 0.02
ACGTcount: A:0.42, C:0.28, G:0.05, T:0.25
Consensus pattern (32 bp):
ATATCTCATCCACAAAAGATCAATCATCAATC
Found at i:8166783 original size:46 final size:46
Alignment explanation
Indices: 8166720--8166898 Score: 225
Period size: 46 Copynumber: 3.9 Consensus size: 46
8166710 AGTGTGGAAT
* * *
8166720 GTAGGTACGGTAATTCAGTAAAGAAAACCATACTGAGTTATGGAAC
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTATGAAAC
* * * *
8166766 GTAGGTATGGTGTTTCAGTGAAGAAAACTATACTGAGTTGTGAAAC
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTATGAAAC
** * *
8166812 GTAGGTATGGTATTTCAGTAACA-AAAGTCATACTGAGTTGTGAAAA
1 GTAGGTATGGTATTTCAGTAA-AGAAAACCATACTGAGTTATGAAAC
* *
8166858 GTAGGTATGATATTTCAGTGAAGAAAACCATACTGAGTTAT
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTAT
8166899 AGCATTGCAA
Statistics
Matches: 113, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
45 1 0.01
46 111 0.98
47 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.29
Consensus pattern (46 bp):
GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTATGAAAC
Found at i:8166877 original size:92 final size:92
Alignment explanation
Indices: 8166720--8166896 Score: 248
Period size: 92 Copynumber: 1.9 Consensus size: 92
8166710 AGTGTGGAAT
* * * *
8166720 GTAGGTACGGTAATTCAGTAAAGAAAACCATACTGAGTTATGGAACGTAGGTATGGTGTTTCAGT
1 GTAGGTACGGTAATTCAGTAAAGAAAACCATACTGAGTTATGAAAAGTAGGTATGATATTTCAGT
*
8166785 GAAGAAAACTATACTGAGTTGTGAAAC
66 GAAGAAAACCATACTGAGTTGTGAAAC
* * ** *
8166812 GTAGGTATGGTATTTCAGTAACA-AAAGTCATACTGAGTTGTGAAAAGTAGGTATGATATTTCAG
1 GTAGGTACGGTAATTCAGTAA-AGAAAACCATACTGAGTTATGAAAAGTAGGTATGATATTTCAG
8166876 TGAAGAAAACCATACTGAGTT
65 TGAAGAAAACCATACTGAGTT
8166897 ATAGCATTGC
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
92 73 0.99
93 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.29
Consensus pattern (92 bp):
GTAGGTACGGTAATTCAGTAAAGAAAACCATACTGAGTTATGAAAAGTAGGTATGATATTTCAGT
GAAGAAAACCATACTGAGTTGTGAAAC
Found at i:8180008 original size:34 final size:33
Alignment explanation
Indices: 8179969--8180066 Score: 119
Period size: 34 Copynumber: 2.9 Consensus size: 33
8179959 TTTAGGGTTT
**
8179969 TTTTAAAAAAATTAATTAAATTAGATTTTTAAGG-
1 TTTTAAAAAAATTAATTAAATTAG-GGTTT-AGGA
*
8180003 TTTTAAATAAATTAATTAAATTAGGGTTTAGGA
1 TTTTAAAAAAATTAATTAAATTAGGGTTTAGGA
*
8180036 TTTTTAAAAAAA-TAATTAAATTATGGTTTAG
1 -TTTTAAAAAAATTAATTAAATTAGGGTTTAG
8180067 TTTTTTTTTA
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
32 3 0.05
33 21 0.37
34 33 0.58
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.44
Consensus pattern (33 bp):
TTTTAAAAAAATTAATTAAATTAGGGTTTAGGA
Found at i:8180073 original size:33 final size:32
Alignment explanation
Indices: 8179965--8180073 Score: 96
Period size: 33 Copynumber: 3.2 Consensus size: 32
8179955 AAAGTTTAGG
*
8179965 GTTTTTTTAAAAAAATTAATTAAATTAGATTT-
1 GTTTTTTTAAAAAAA-TAATTAAATTAGGTTTA
* *
8179997 -TTAAGGTTTTAAATAAATTAATTAAATTAGGGTTTA
1 GTT---TTTTTAAA-AAAATAATTAAATTA-GGTTTA
**
8180033 GGATTTTTAAAAAAATAATTAAATTATGGTTTA
1 GTTTTTTTAAAAAAATAATTAAATTA-GGTTTA
8180066 GTTTTTTT
1 GTTTTTTT
8180074 TTAAATTTGT
Statistics
Matches: 60, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
31 2 0.03
33 26 0.43
34 25 0.42
35 7 0.12
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (32 bp):
GTTTTTTTAAAAAAATAATTAAATTAGGTTTA
Found at i:8180358 original size:125 final size:125
Alignment explanation
Indices: 8180127--8180522 Score: 497
Period size: 128 Copynumber: 3.1 Consensus size: 125
8180117 AACTTTTGTT
* ** * * * * * * ** *
8180127 TTTTTCTACCGTAGTTTTTGAAAAAGTAATTTTAAGAATACGGTTTTGAAAGGATAATGTAAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTAAAAAAATAGTGTAAAAA
*
8180192 ATGCTTCAAGCAGGATGCACTG-CAGCAAAATTACTGAAAAAAGCTCCCACGTGGGCGCTC
66 ATGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGGCG-TC
* * *
8180252 TTTTTCTACAGTAGTTCCTGAAAAAATGATTTTGAGAAGATGATTCTAAACAAATAGTGTAAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTAAAAAAATAGTGTAAAAA
* * * *
8180317 ATGCTTCAAGCAGGATGCACTGTTAGCAAAATTACTGAAAAAAGTTCCTACGTGGATGATGTT
66 ATGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGG--G-CGTC
* * * *
8180380 TTTTTTTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGACGATTCTAAAAAAATAGTATCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTAAAAAAATAGTGTAAAAA
* *
8180445 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGTAC
66 ATGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGGCGT-C
*
8180506 TTTTTCTACAATAGTTC
1 TTTTTCTACAGTAGTTC
8180523 TTGTTTGGCC
Statistics
Matches: 231, Mismatches: 35, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
125 74 0.32
126 44 0.19
128 112 0.48
129 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (125 bp):
TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTAAAAAAATAGTGTAAAAA
ATGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGGCGTC
Found at i:8183620 original size:105 final size:105
Alignment explanation
Indices: 8183438--8183706 Score: 475
Period size: 105 Copynumber: 2.6 Consensus size: 105
8183428 TTGTATATAA
**
8183438 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
8183503 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
8183543 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
8183608 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** * *
8183648 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCA
8183707 ATAACGGTTA
Statistics
Matches: 156, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
105 156 1.00
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:8186279 original size:24 final size:24
Alignment explanation
Indices: 8186223--8186279 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
8186213 AAGAACTTCT
*
8186223 ATTTTATTAAAAATATAAAAATAA
1 ATTTTATTAAAAATATAAAAACAA
*
8186247 ATTAGTATT-AAAATATTAAAAACAA
1 ATT-TTATTAAAAATA-TAAAAACAA
*
8186272 CTTTTATT
1 ATTTTATT
8186280 TCTTTAAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
24 13 0.48
25 14 0.52
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (24 bp):
ATTTTATTAAAAATATAAAAACAA
Found at i:8186723 original size:18 final size:18
Alignment explanation
Indices: 8186700--8186737 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
8186690 GGGAAAAGAA
*
8186700 ACATATAAGGGTTAGGAT
1 ACATATAAGGGCTAGGAT
8186718 ACATATAAGGGCTAGGAT
1 ACATATAAGGGCTAGGAT
8186736 AC
1 AC
8186738 GCACCTGGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.11, G:0.26, T:0.24
Consensus pattern (18 bp):
ACATATAAGGGCTAGGAT
Found at i:8188729 original size:18 final size:18
Alignment explanation
Indices: 8188701--8188745 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
8188691 AATCGTTCAT
*
8188701 CTAGGAAACATATAAGGG
1 CTAGGATACATATAAGGG
*
8188719 TTAGGATACATATAAGGG
1 CTAGGATACATATAAGGG
8188737 CTAGGATAC
1 CTAGGATAC
8188746 GCACCTGGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.40, C:0.11, G:0.27, T:0.22
Consensus pattern (18 bp):
CTAGGATACATATAAGGG
Found at i:8190332 original size:22 final size:23
Alignment explanation
Indices: 8190298--8190341 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
8190288 AAAAATTAAC
*
8190298 AAAAATTACATAA-A-TGAAAAA
1 AAAAATTAAATAATATTGAAAAA
8190319 AAAAGATTAAATAATATTGAAAA
1 AAAA-ATTAAATAATATTGAAAA
8190342 TTTAAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.21
22 8 0.42
23 1 0.05
24 6 0.32
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.23
Consensus pattern (23 bp):
AAAAATTAAATAATATTGAAAAA
Found at i:8191896 original size:31 final size:31
Alignment explanation
Indices: 8191849--8191921 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
8191839 ATAACTGCCT
* * **
8191849 AGTGACTTAAACAAAAATTTTTAAATAGTTC
1 AGTGACTCAAATAAAAACATTTAAATAGTTC
* *
8191880 AGTGACTCAAATAAAAACATTTGAATAGTTT
1 AGTGACTCAAATAAAAACATTTAAATAGTTC
8191911 AGTGAC-CAAAT
1 AGTGACTCAAAT
8191922 TGTAACCTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
30 5 0.14
31 31 0.86
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32
Consensus pattern (31 bp):
AGTGACTCAAATAAAAACATTTAAATAGTTC
Found at i:8207269 original size:21 final size:22
Alignment explanation
Indices: 8207245--8207289 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
8207235 TATTTATAAA
8207245 TTTTAGAATTTTATGG-A-TTCT
1 TTTTAGAA-TTTATGGTATTTCT
8207266 TTTTAGAATTTATGGTATTTCT
1 TTTTAGAATTTATGGTATTTCT
8207288 TT
1 TT
8207290 AATAAAAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.32
21 9 0.41
22 6 0.27
ACGTcount: A:0.22, C:0.04, G:0.13, T:0.60
Consensus pattern (22 bp):
TTTTAGAATTTATGGTATTTCT
Found at i:8207290 original size:20 final size:21
Alignment explanation
Indices: 8207246--8207290 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
8207236 ATTTATAAAT
*
8207246 TTTAGAATTTTATGGATTCTT
1 TTTAGAATTTTATGGATTCTC
8207267 TTTAGAA-TTTATGGTATT-TC
1 TTTAGAATTTTATGG-ATTCTC
8207287 TTTA
1 TTTA
8207291 ATAAAAACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.24, C:0.04, G:0.13, T:0.58
Consensus pattern (21 bp):
TTTAGAATTTTATGGATTCTC
Found at i:8217261 original size:21 final size:21
Alignment explanation
Indices: 8217237--8217307 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
8217227 GGCCAGAAGT
8217237 TATTGGTAATGTTTACTGGTC
1 TATTGGTAATGTTTACTGGTC
** * *
8217258 TATTGACAATGGTTGCATAGAAGT-
1 TATTGGTAATGTTTAC-T-G--GTC
8217282 TATTGGTAATGTTTACTGGTC
1 TATTGGTAATGTTTACTGGTC
8217303 TATTG
1 TATTG
8217308 ACAATGGTTG
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
20 2 0.05
21 17 0.46
22 2 0.05
23 2 0.05
24 12 0.32
25 2 0.05
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.44
Consensus pattern (21 bp):
TATTGGTAATGTTTACTGGTC
Found at i:8217295 original size:45 final size:45
Alignment explanation
Indices: 8217231--8217320 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
8217221 GGGTTTGGCC
8217231 AGAAGTTATTGGTAATGTTTACTGGTCTATTGACAATGGTTGCAT
1 AGAAGTTATTGGTAATGTTTACTGGTCTATTGACAATGGTTGCAT
8217276 AGAAGTTATTGGTAATGTTTACTGGTCTATTGACAATGGTTGCAT
1 AGAAGTTATTGGTAATGTTTACTGGTCTATTGACAATGGTTGCAT
8217321 CATGAACTTC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.27, C:0.09, G:0.24, T:0.40
Consensus pattern (45 bp):
AGAAGTTATTGGTAATGTTTACTGGTCTATTGACAATGGTTGCAT
Found at i:8219303 original size:37 final size:37
Alignment explanation
Indices: 8219255--8219382 Score: 220
Period size: 37 Copynumber: 3.5 Consensus size: 37
8219245 GTTAAGTGAT
* *
8219255 AATTAAGATAGAGTTATTAAATGAGAATATTTTATTA
1 AATTAAAATAGAGTTATTAAATGAGAATACTTTATTA
8219292 AATTAAAATAGAGTTATTAAATGAGAATACTTTATTA
1 AATTAAAATAGAGTTATTAAATGAGAATACTTTATTA
* *
8219329 AATTAAAATGGAGTTATTAAATGAGAATAGTTTATTA
1 AATTAAAATAGAGTTATTAAATGAGAATACTTTATTA
8219366 AATTAAAATAGAGTTAT
1 AATTAAAATAGAGTTAT
8219383 CACTTAACTA
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 86 1.00
ACGTcount: A:0.48, C:0.01, G:0.13, T:0.38
Consensus pattern (37 bp):
AATTAAAATAGAGTTATTAAATGAGAATACTTTATTA
Found at i:8219375 original size:18 final size:18
Alignment explanation
Indices: 8219268--8219376 Score: 103
Period size: 18 Copynumber: 5.9 Consensus size: 18
8219258 TAAGATAGAG
* *
8219268 TTATTAAATGAGAATATT
1 TTATTAAATGAAAATAGT
* *
8219286 TTATTAAATTAAAATAGAG
1 TTATTAAATGAAAATAG-T
* *
8219305 TTATTAAATGAGAATACT
1 TTATTAAATGAAAATAGT
*
8219323 TTATTAAATTAAAATGGAG-
1 TTATTAAATGAAAAT--AGT
*
8219342 TTATTAAATGAGAATAGT
1 TTATTAAATGAAAATAGT
*
8219360 TTATTAAATTAAAATAG
1 TTATTAAATGAAAATAG
8219377 AGTTATCACT
Statistics
Matches: 72, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
17 2 0.03
18 42 0.58
19 27 0.38
20 1 0.01
ACGTcount: A:0.48, C:0.01, G:0.12, T:0.39
Consensus pattern (18 bp):
TTATTAAATGAAAATAGT
Found at i:8219955 original size:27 final size:27
Alignment explanation
Indices: 8219914--8219974 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
8219904 CATTTTAGTC
8219914 CATTGGCACCATTGGTGCCGCCAATCT
1 CATTGGCACCATTGGTGCCGCCAATCT
* * *
8219941 CATTGGCACCTTTGGTGCCTCCAATGT
1 CATTGGCACCATTGGTGCCGCCAATCT
*
8219968 GATTGGC
1 CATTGGC
8219975 CTGACCAAGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.16, C:0.30, G:0.25, T:0.30
Consensus pattern (27 bp):
CATTGGCACCATTGGTGCCGCCAATCT
Found at i:8220058 original size:25 final size:27
Alignment explanation
Indices: 8220029--8220091 Score: 94
Period size: 28 Copynumber: 2.4 Consensus size: 27
8220019 TTTTTTTGTT
8220029 ATATTTTGGTAAAT-AAAAAA-TTATA
1 ATATTTTGGTAAATAAAAAAAGTTATA
*
8220054 ATATTTTGATAAATAAAAAAAAGTTATA
1 ATATTTTGGTAAAT-AAAAAAAGTTATA
8220082 ATATTTTGGT
1 ATATTTTGGT
8220092 TATTTTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 13 0.39
27 6 0.18
28 14 0.42
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAGTTATA
Found at i:8220083 original size:28 final size:25
Alignment explanation
Indices: 8220029--8220089 Score: 86
Period size: 25 Copynumber: 2.3 Consensus size: 25
8220019 TTTTTTTGTT
*
8220029 ATATTTTGGTAAATAAAAAATTATA
1 ATATTTTGATAAATAAAAAATTATA
8220054 ATATTTTGATAAATAAAAAAAAGTTATA
1 ATATTTTGATAAAT--AAAAAA-TTATA
8220082 ATATTTTG
1 ATATTTTG
8220090 GTTATTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
25 13 0.41
27 6 0.19
28 13 0.41
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (25 bp):
ATATTTTGATAAATAAAAAATTATA
Found at i:8224708 original size:3 final size:3
Alignment explanation
Indices: 8224702--8224759 Score: 55
Period size: 3 Copynumber: 19.3 Consensus size: 3
8224692 TAATAGCACC
* * * * *
8224702 AAT AAT AAT AAT AAT AGT AAC AAT ACT AAT AAC AAT AAT AAT GAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
8224751 AA- AAT AAT A
1 AAT AAT AAT A
8224760 TTAAACAGTT
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
2 2 0.05
3 39 0.91
4 2 0.05
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:8224725 original size:21 final size:21
Alignment explanation
Indices: 8224689--8224738 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
8224679 TAAATAATTG
*
8224689 TAATAATAGCACCAATAATAA
1 TAATAATAGCAACAATAATAA
* *
8224710 TAATAATAGTAACAATACTAA
1 TAATAATAGCAACAATAATAA
*
8224731 TAACAATA
1 TAATAATA
8224739 ATAATGATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.58, C:0.12, G:0.04, T:0.26
Consensus pattern (21 bp):
TAATAATAGCAACAATAATAA
Found at i:8226610 original size:30 final size:29
Alignment explanation
Indices: 8226576--8226632 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 29
8226566 ACCAATTATA
*
8226576 ATTAAATT-CTAAAATTTGAAAAATAAAAAG
1 ATTAAATTCCTAAAA-GT-AAAAATAAAAAG
8226606 ATTAAATTCCTAAAAGTAAAAATAAAA
1 ATTAAATTCCTAAAAGTAAAAATAAAA
8226633 TAACTAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 10 0.40
30 9 0.36
31 6 0.24
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.28
Consensus pattern (29 bp):
ATTAAATTCCTAAAAGTAAAAATAAAAAG
Found at i:8226742 original size:29 final size:28
Alignment explanation
Indices: 8226710--8226775 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 28
8226700 TCAATTATGT
8226710 TTAAATTTTAAAAAATAAAAATAAAAAGA
1 TTAAATTTT-AAAAATAAAAATAAAAAGA
* *
8226739 TTAAATTCCTAAAAATAAAAATAAAATGA
1 TTAAATT-TTAAAAATAAAAATAAAAAGA
*
8226768 CTAAATTT
1 TTAAATTT
8226776 CAAATGTGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 31 0.97
30 1 0.03
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (28 bp):
TTAAATTTTAAAAATAAAAATAAAAAGA
Found at i:8226784 original size:132 final size:133
Alignment explanation
Indices: 8226429--8226789 Score: 528
Period size: 133 Copynumber: 2.7 Consensus size: 133
8226419 TAGTAGAAAA
* * *
8226429 AGTTACCAATTATATTTAAAATTTAAAATTTGAAAAATAGAAAGATTAAATTCCTAAAAATCAAA
1 AGTTACCAATTATATTTAAATTTTAAAATTTGAAAAATAAAAAGATTAAATTCCTAAAAATAAAA
* * * * * *
8226494 ATAGAATGACTAAATTTCAAACGTGTGAAGATGTCGAACCAATAAATTTAGCAGAGAAATTTAGC
66 ATAAAATGACTAAATTTCAAATGTGTGAAGATGTCAAACAAACAAATTTAGCAGAAAAATTTAGC
*
8226559 TGG
131 TAG
* * *
8226562 AGTTACCAATTATAATTAAATTCTAAAATTTGAAAAATAAAAAGATTAAATTCCTAAAAGTAAAA
1 AGTTACCAATTATATTTAAATTTTAAAATTTGAAAAATAAAAAGATTAAATTCCTAAAAATAAAA
* *
8226627 ATAAAATAACTAAATTTCAAATGTGTGAATATGTCAAACAAACAAATTTAGCAGAAAAATTTAG-
66 ATAAAATGACTAAATTTCAAATGTGTGAAGATGTCAAACAAACAAATTTAGCAGAAAAATTTAGC
8226691 TCAG
131 T-AG
* * **
8226695 AGTTATCAATTATGTTTAAATTTTAAAAAAT-AAAAATAAAAAGATTAAATTCCTAAAAATAAAA
1 AGTTACCAATTATATTTAAATTTTAAAATTTGAAAAATAAAAAGATTAAATTCCTAAAAATAAAA
8226759 ATAAAATGACTAAATTTCAAATGTGTGAAGA
66 ATAAAATGACTAAATTTCAAATGTGTGAAGA
8226790 GTAATAGATT
Statistics
Matches: 203, Mismatches: 24, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
132 62 0.31
133 141 0.69
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.30
Consensus pattern (133 bp):
AGTTACCAATTATATTTAAATTTTAAAATTTGAAAAATAAAAAGATTAAATTCCTAAAAATAAAA
ATAAAATGACTAAATTTCAAATGTGTGAAGATGTCAAACAAACAAATTTAGCAGAAAAATTTAGC
TAG
Found at i:8227012 original size:90 final size:88
Alignment explanation
Indices: 8226868--8227229 Score: 363
Period size: 90 Copynumber: 4.0 Consensus size: 88
8226858 CATAAAAAGT
* * * * *
8226868 CCTCAATTTTTTCAAAAAAAAATTAATTAAG-TCTAGATTTTTTTTTACACTTAATTGGATACTT
1 CCTCAAATTTTTC--AAAAAAAGTAATTAAGCTCT-GCTTTTTTTTTACATTTAATTGGGTACTT
* * *
8226932 AAATTTTCAAAATGTATCAAGAAGGC
63 AAATTTTCAAAATATATCAAAAAGAC
*
8226958 CCTCAAGATTTTTCAAAAAAAGTAATTAAGCTCATGCTTTTTTTTTCCATTTAATTGGGTACTTA
1 CCTCAA-ATTTTTCAAAAAAAGTAATTAAGCTC-TGCTTTTTTTTTACATTTAATTGGGTACTTA
*
8227023 AACTTTCAAAATATATCAAAAAGAC
64 AATTTTCAAAATATATCAAAAAGAC
* *
8227048 CCTCAAAATTTTTCAAAAAAAGTAATTAAGCCCCTGCTTTTTTTTTTACATTCAATTGGGTACTT
1 CCTC-AAATTTTTCAAAAAAAGTAATTAAG-CTCTGC-TTTTTTTTTACATTTAATTGGGTACTT
** *
8227113 GAGCTTTT-AAAATACATCAAAAAGAC
63 -AAATTTTCAAAATATATCAAAAAGAC
* * * * * * *
8227139 CCTCAAATTTTTTCAAAAAAAGCAATTAAGC-CT-CTCATTTTTTAACACTCAATTAGGTACTTC
1 CCTCAAA-TTTTTCAAAAAAAGTAATTAAGCTCTGCT-TTTTTTTTACATTTAATTGGGTACTTA
* ** *
8227202 AATTGTCAAAATGCATCAAAAAAAC
64 AATTTTCAAAATATATCAAAAAGAC
8227227 CCT
1 CCT
8227230 TTGACCGATA
Statistics
Matches: 234, Mismatches: 28, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
87 4 0.02
88 42 0.18
89 17 0.07
90 89 0.38
91 78 0.33
92 4 0.02
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (88 bp):
CCTCAAATTTTTCAAAAAAAGTAATTAAGCTCTGCTTTTTTTTTACATTTAATTGGGTACTTAAA
TTTTCAAAATATATCAAAAAGAC
Found at i:8227132 original size:91 final size:88
Alignment explanation
Indices: 8226883--8227170 Score: 344
Period size: 91 Copynumber: 3.2 Consensus size: 88
8226873 ATTTTTTCAA
* * * * * * *
8226883 AAAAAAATTAATTAAGTCTA-GATTTTTTTTTACACTTAATTGGATACTTAAATTTTCAAAATGT
1 AAAAAAAGTAATTAAGCCCATGCTTTTTTTTTACA-TTAATTGGGTACTTAACTTTT-AAAATAT
* * *
8226947 ATCAAGAAGGCCCTCAAGATTTTTC
64 ATCAAAAAGACCCTCAAAATTTTTC
* * *
8226972 AAAAAAAGTAATTAAGCTCATGCTTTTTTTTTCCATTTAATTGGGTACTTAAACTTTCAAAATAT
1 AAAAAAAGTAATTAAGCCCATGCTTTTTTTTTACA-TTAATTGGGTACTT-AACTTTTAAAATAT
8227037 ATCAAAAAGACCCTCAAAATTTTTC
64 ATCAAAAAGACCCTCAAAATTTTTC
* *
8227062 AAAAAAAGTAATTAAGCCCCTGCTTTTTTTTTTACATTCAATTGGGTACTTGAGCTTTTAAAATA
1 AAAAAAAGTAATTAAGCCCATGC-TTTTTTTTTACATT-AATTGGGTACTT-AACTTTTAAAATA
* *
8227127 CATCAAAAAGACCCTCAAATTTTTTC
63 TATCAAAAAGACCCTCAAAATTTTTC
*
8227153 AAAAAAAGCAATTAAGCC
1 AAAAAAAGTAATTAAGCC
8227171 TCTCATTTTT
Statistics
Matches: 172, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
89 16 0.09
90 76 0.44
91 80 0.47
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.36
Consensus pattern (88 bp):
AAAAAAAGTAATTAAGCCCATGCTTTTTTTTTACATTAATTGGGTACTTAACTTTTAAAATATAT
CAAAAAGACCCTCAAAATTTTTC
Found at i:8240985 original size:29 final size:28
Alignment explanation
Indices: 8240902--8240985 Score: 64
Period size: 29 Copynumber: 2.9 Consensus size: 28
8240892 ATTAACCGTT
8240902 AGACTCAAATTTTGAAATTTGA-AAAGTAAA
1 AGACT-AAATTTT-AAATTT-ACAAAGTAAA
* ** *
8240932 ATGACTAAATTTTTAA-GAACAAAAGTATAG
1 A-GACTAAATTTTAAATTTAC-AAAGTA-AA
8240962 AGACTAAATTTTAAATTTACAAAG
1 AGACTAAATTTTAAATTTACAAAG
8240986 CATGCAAAGA
Statistics
Matches: 42, Mismatches: 7, Indels: 11
0.70 0.12 0.18
Matches are distributed among these distances:
27 1 0.02
29 25 0.60
30 12 0.29
31 4 0.10
ACGTcount: A:0.50, C:0.07, G:0.12, T:0.31
Consensus pattern (28 bp):
AGACTAAATTTTAAATTTACAAAGTAAA
Found at i:8259525 original size:18 final size:18
Alignment explanation
Indices: 8259488--8259523 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8259478 TTATTATTTT
*
8259488 TAAAATTTACTATTAAAA
1 TAAAATTTAATATTAAAA
8259506 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
8259524 TATTTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:8259534 original size:19 final size:19
Alignment explanation
Indices: 8259512--8259585 Score: 53
Period size: 19 Copynumber: 3.8 Consensus size: 19
8259502 AAAATAAAAT
8259512 TTAAATATTAAATATTTTA
1 TTAAATATTAAATATTTTA
* * *
8259531 TTAAA-AATAATAAATTATA
1 TTAAATATTAA-ATATTTTA
*
8259550 TTAATTATATT-AATAATTTA
1 TTAA--ATATTAAATATTTTA
*
8259570 TTATATGATTAAATAT
1 TTAAAT-ATTAAATAT
8259586 AAATAATTAA
Statistics
Matches: 40, Mismatches: 9, Indels: 11
0.67 0.15 0.18
Matches are distributed among these distances:
18 6 0.15
19 18 0.45
20 12 0.30
21 2 0.05
22 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (19 bp):
TTAAATATTAAATATTTTA
Found at i:8270675 original size:4 final size:4
Alignment explanation
Indices: 8270666--8270704 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
8270656 ATTCTTACTT
*
8270666 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TATA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA
8270705 TCAGGCTGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:8277588 original size:16 final size:17
Alignment explanation
Indices: 8277567--8277599 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8277557 AAAAAAGTCC
*
8277567 TCAATT-AGGGGCAAAT
1 TCAATTAAGGGGAAAAT
8277583 TCAATTAAGGGGAAAAT
1 TCAATTAAGGGGAAAAT
8277600 AATAGAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.24
Consensus pattern (17 bp):
TCAATTAAGGGGAAAAT
Found at i:8290346 original size:21 final size:21
Alignment explanation
Indices: 8290320--8290374 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
8290310 AATAGCGGTG
*
8290320 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGGTACTGTA
* *
8290341 GCGGTGAGATTGGGTATTGTA
1 GCGGTGAGATTAGGTACTGTA
*
8290362 GCAGTGAGATTAG
1 GCGGTGAGATTAG
8290375 AAACAACAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.24, C:0.07, G:0.38, T:0.31
Consensus pattern (21 bp):
GCGGTGAGATTAGGTACTGTA
Found at i:8290510 original size:19 final size:18
Alignment explanation
Indices: 8290486--8290541 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 18
8290476 TAGAAATTTT
8290486 TAAAATTATTTAACAATTA
1 TAAAATTA-TTAACAATTA
*
8290505 TAAAATTAATAA-ATGATTA
1 TAAAATTATTAACA--ATTA
8290524 -AAAATTATT-ACAATTA
1 TAAAATTATTAACAATTA
8290540 TA
1 TA
8290542 TTTATTTTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
16 4 0.13
17 3 0.10
18 12 0.39
19 12 0.39
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (18 bp):
TAAAATTATTAACAATTA
Found at i:8297890 original size:15 final size:15
Alignment explanation
Indices: 8297870--8297900 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8297860 CCAACCTTCA
*
8297870 AATTTTAGGTCAATT
1 AATTTTACGTCAATT
8297885 AATTTTACGTCAATT
1 AATTTTACGTCAATT
8297900 A
1 A
8297901 TACATAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (15 bp):
AATTTTACGTCAATT
Found at i:8299883 original size:39 final size:41
Alignment explanation
Indices: 8299840--8299988 Score: 166
Period size: 38 Copynumber: 3.7 Consensus size: 41
8299830 AATACAATAA
* **
8299840 TTTTTTATTTTTTTTTTATTTTTTAA-A-TTTTAAAATACT
1 TTTTTTATTTTTTTTTAATTTTAAAATATTTTTAAAATACT
*
8299879 TTTTTTA-ATTTTTTTAATTTTAAAAATATTTTTAAAATAC-
1 TTTTTTATTTTTTTTTAATTTT-AAAATATTTTTAAAATACT
* *
8299919 --TTTTAATTTTTTTTAATTTTAAAATATTTTTAAAATAAAT
1 TTTTTTATTTTTTTTTAATTTTAAAATATTTTTAAAAT-ACT
8299959 TTTTTTATTTTTGTTTTAATTTTTAAAATA
1 TTTTTTATTTTT-TTTTAA-TTTTAAAATA
8299989 AATTTTTGGT
Statistics
Matches: 93, Mismatches: 7, Indels: 15
0.81 0.06 0.13
Matches are distributed among these distances:
38 33 0.35
39 23 0.25
40 1 0.01
41 11 0.12
42 9 0.10
43 6 0.06
44 10 0.11
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (41 bp):
TTTTTTATTTTTTTTTAATTTTAAAATATTTTTAAAATACT
Found at i:8299884 original size:30 final size:30
Alignment explanation
Indices: 8299848--8299911 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 30
8299838 AATTTTTTAT
*
8299848 TTTTTTTTTATTTTTTAAATTTT-AAAATA
1 TTTTTTTTAATTTTTTAAATTTTAAAAATA
* *
8299877 CTTTTTTTAATTTTTTTAATTTTAAAAATA
1 TTTTTTTTAATTTTTTAAATTTTAAAAATA
8299907 TTTTT
1 TTTTT
8299912 AAAATACTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 20 0.67
30 10 0.33
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.69
Consensus pattern (30 bp):
TTTTTTTTAATTTTTTAAATTTTAAAAATA
Found at i:8300674 original size:11 final size:11
Alignment explanation
Indices: 8300658--8300684 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
8300648 TAGAAATTAG
8300658 TTTGTGAAACT
1 TTTGTGAAACT
8300669 TTTGTGAAACT
1 TTTGTGAAACT
8300680 TTTGT
1 TTTGT
8300685 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:8302188 original size:91 final size:91
Alignment explanation
Indices: 8302065--8302271 Score: 283
Period size: 91 Copynumber: 2.3 Consensus size: 91
8302055 TTGATTTTAG
* * *
8302065 TAAATTCATATAATACCATTTTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAATA-AAATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
* *
8302130 ATTTAAT-ATCAATTATTTTAAATTGTA
65 ATGTAATAAT-AATTATTTTAAATTATA
* * *
8302157 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAATAAAATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTATA
*
8302222 TGTAATAATTATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
8302248 CAAATTCATA-AATATAATTTATTA
1 TAAATTCATATAATAAAATTTATTA
8302272 GTTATAATTA
Statistics
Matches: 102, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
90 12 0.12
91 74 0.73
92 16 0.16
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAATAAAATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:8302310 original size:17 final size:17
Alignment explanation
Indices: 8302288--8302321 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
8302278 ATTATTTTAA
8302288 ATTTT-ATTAAATCATAT
1 ATTTTAATTAAAT-ATAT
8302305 ATTTTAATTAAATATAT
1 ATTTTAATTAAATATAT
8302322 TTAATATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTTAATTAAATATAT
Found at i:8302441 original size:16 final size:16
Alignment explanation
Indices: 8302420--8302463 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
8302410 TTATTAAATT
*
8302420 ATATATTTTAATTATA
1 ATATATTTTAATAATA
8302436 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
8302451 AT-TATGTTTAATA
1 ATATAT-TTTAATA
8302464 TATTAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:8302544 original size:145 final size:147
Alignment explanation
Indices: 8302395--8302665 Score: 476
Period size: 145 Copynumber: 1.9 Consensus size: 147
8302385 ATAAGAATAT
* *
8302395 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-
1 TAATTATAAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTA
* *
8302459 TAATAT-ATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAA-AATAATTT
66 AAATATGATTAAATTATTTATTATTGATACTAATAATCTTATTAAAATTT-AATAACAATAATTT
8302522 ACCAAAATAAATTTCTGC
130 ACCAAAATAAATTTCTGC
8302540 TAATTATAAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTA
1 TAATTATAAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTA
8302605 AAATATGATTAAATTATTTATTATTGATACTAATAATCTTATTAAAATTTAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATACTAATAATCTTATTAAAATTTAATAACAATAA
8302666 CAATAATCAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
145 62 0.52
146 10 0.08
147 47 0.39
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TAATTATAAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTA
AAATATGATTAAATTATTTATTATTGATACTAATAATCTTATTAAAATTTAATAACAATAATTTA
CCAAAATAAATTTCTGC
Found at i:8302580 original size:18 final size:17
Alignment explanation
Indices: 8302552--8302586 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8302542 ATTATAAAGA
*
8302552 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8302569 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8302587 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8302829 original size:45 final size:43
Alignment explanation
Indices: 8302730--8302839 Score: 120
Period size: 45 Copynumber: 2.6 Consensus size: 43
8302720 TTTTCTATTA
8302730 TGCTATTACACCTCTATT-A-T--ATTCAACCAAACACAGGAT
1 TGCTATTACACCTCTATTCATTACATTCAACCAAACACAGGAT
* * ***
8302769 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATT-CATTACATTCAACCAAACACAGGA-T
8302814 TGCTATTACACCTCTATTTCATTACA
1 TGCTATTACACCTCTA-TTCATTACA
8302840 CCTCTATTCC
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
39 16 0.28
41 1 0.02
42 1 0.02
44 15 0.26
45 22 0.39
46 2 0.04
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCATTACATTCAACCAAACACAGGAT
Found at i:8302839 original size:16 final size:16
Alignment explanation
Indices: 8302818--8302871 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
8302808 TTGATTTGCT
*
8302818 ATTACACCTCTATTTC
1 ATTACACCTCTATTCC
8302834 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
8302850 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
*
8302866 AATACA
1 ATTACA
8302872 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.31, C:0.33, G:0.00, T:0.35
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:8307243 original size:7 final size:7
Alignment explanation
Indices: 8307231--8307285 Score: 58
Period size: 7 Copynumber: 7.9 Consensus size: 7
8307221 TCACTTTAAA
8307231 AAAAAAG
1 AAAAAAG
8307238 AAAAAAG
1 AAAAAAG
*
8307245 AACAAAG
1 AAAAAAG
**
8307252 AAAAATC
1 AAAAAAG
*
8307259 AAAAAAA
1 AAAAAAG
8307266 AAGAAAAG
1 AA-AAAAG
8307274 -AAAAAG
1 AAAAAAG
8307280 AAAAAA
1 AAAAAA
8307286 AAAGGAGGGG
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
6 5 0.13
7 30 0.77
8 4 0.10
ACGTcount: A:0.84, C:0.04, G:0.11, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:8307283 original size:21 final size:21
Alignment explanation
Indices: 8307228--8307289 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
8307218 ACTTCACTTT
*
8307228 AAAA-AAAAAGAAAAAAGAA-
1 AAAAGAAAAAGAAAAAAAAAG
* *
8307247 CAAAGAAAAATCAAAAAAAAAG
1 AAAAGAAAAA-GAAAAAAAAAG
8307269 AAAAGAAAAAGAAAAAAAAAG
1 AAAAGAAAAAGAAAAAAAAAG
8307290 GAGGGGCCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 3 0.09
20 5 0.14
21 18 0.51
22 9 0.26
ACGTcount: A:0.84, C:0.03, G:0.11, T:0.02
Consensus pattern (21 bp):
AAAAGAAAAAGAAAAAAAAAG
Found at i:8308397 original size:44 final size:44
Alignment explanation
Indices: 8308313--8308397 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
8308303 CAAATTATGG
** * **
8308313 CAAATCTTATCTCCTTGAAATTGTAGTGCAGCAGTTTGAAGCCA
1 CAAATCTTATCTCCTTGAAATTACAGCGCAGCAGACTGAAGCCA
* *
8308357 CAAATCTTATCTCCTTGAAGTTACAGCGGAGCAGACTGAAG
1 CAAATCTTATCTCCTTGAAATTACAGCGCAGCAGACTGAAG
8308398 ACAGTGAATC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (44 bp):
CAAATCTTATCTCCTTGAAATTACAGCGCAGCAGACTGAAGCCA
Found at i:8308434 original size:143 final size:142
Alignment explanation
Indices: 8308164--8309059 Score: 918
Period size: 143 Copynumber: 6.3 Consensus size: 142
8308154 GATTGAAGTC
* * * * * * *
8308164 ATTATGGCGGATCTTATATTCCTGAAGTTGTAGAGGAACAAATTGAAGCCACCAG-CTTATCTCT
1 ATTATGGCAGATCTTATCTTCCTGAAGTTGTAG-TGAGCAGATTGAAGCCACAAGTCTTATCTCC
* * * **
8308228 CTGAAGTTGCAGCAGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGGCGTTATAGTGGAACAG
65 CTGAAGTTACAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAG
8308293 ATTAAAGCTACAA
130 ATTAAAGCTACAA
* * * *
8308306 ATTATGGCAAATCTTATC-TCCTTGAAATTGTAGTGCAGCAGTTTGAAGCCACAAATCTTATCTC
1 ATTATGGCAGATCTTATCTTCC-TGAAGTTGTAGTG-AGCAGATTGAAGCCACAAGTCTTATCTC
* * * *
8308370 CTTGAAGTTACAGCGGAGCAGACTGAAGACAGTGAATCTTATTTCCCTGGTGTTGCAGTAGAACA
64 CCTGAAGTTACAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACA
8308435 GATTAAAG-TAACAA
129 GATTAAAGCT-ACAA
* * ** *
8308449 ATTATGG-AGGATCTTATCTTCCTGAAGTTGCAGTTGAGTAGATTGAAGCCATTAGTCATATCTC
1 ATTATGGCA-GATCTTATCTTCCTGAAGTTGTAG-TGAGCAGATTGAAGCCACAAGTCTTATCTC
* *
8308513 CCTGAAGTTACAGCGGAGTAGACTGAATACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACA
64 CCTGAAGTTACAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACA
* *
8308578 GATTAAAACAACAA
129 GATTAAAGCTACAA
** * * * * *
8308592 ATTATAACAGATCTTATCTTCCTAAAGTTGTAGTAGAGCAAATTAAAGCCACCAGCCTTATCTCC
1 ATTATGGCAGATCTTATCTTCCTGAAGTTGTAGT-GAGCAGATTGAAGCCACAAGTCTTATCTCC
* * * * * * *
8308657 CTAAAATTGCGGCGGACCAAACTGAAGACAGCGAATCTTATTTCCCT-GCGTTGCAGTAGAACAG
65 CTGAAGTTACAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAG
8308721 ATTAAAGCTACAA
130 ATTAAAGCTACAA
* * * * * *
8308734 ATTATAGCGGATCTTATCTTCCTGAAGTT-TCAGTGGAACAGATTAAAGCCACCAGCCTTATCTC
1 ATTATGGCAGATCTTATCTTCCTGAAGTTGT-AGT-GAGCAGATTGAAGCCACAAGTCTTATCTC
* * * *
8308798 CCTGAAGTTGA-AGCGGAGCTGACTAAAGACAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAAT
64 CCTGAAGTT-ACAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
8308862 AGATTAAAGCTACAA
128 AGATTAAAGCTACAA
* * * *
8308877 ATTATGGCGGATCTTATC-TCTTTGAAGTTGCAGTGGAGCAGTTTGAAGCCACAAGTCTTATCTC
1 ATTATGGCAGATCTTATCTTC-CTGAAGTTGTAGT-GAGCAGATTGAAGCCACAAGTCTTATCTC
* * ** * * *** * *
8308941 CTTGAAGTTGCAGTC-GAGCAGACTGAAGGTAACAAATCTTATTTCCCTAAAGTTACAGTGGAAT
64 CCTGAAGTTACAG-CGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* *
8309005 AGATTGAAGCTATAA
128 AGATTAAAGCTACAA
**
8309020 ATTA---CAGATCTTATC-TCTCTGAAGTTACAGTAGAGCAGAT
1 ATTATGGCAGATCTTATCTTC-CTGAAGTTGTAGT-GAGCAGAT
8309060 CATATAAAAT
Statistics
Matches: 636, Mismatches: 101, Indels: 36
0.82 0.13 0.05
Matches are distributed among these distances:
140 31 0.05
141 5 0.01
142 166 0.26
143 427 0.67
144 7 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (142 bp):
ATTATGGCAGATCTTATCTTCCTGAAGTTGTAGTGAGCAGATTGAAGCCACAAGTCTTATCTCCC
TGAAGTTACAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGA
TTAAAGCTACAA
Found at i:8308951 original size:44 final size:44
Alignment explanation
Indices: 8308887--8309292 Score: 243
Period size: 44 Copynumber: 9.0 Consensus size: 44
8308877 ATTATGGCGG
* * *
8308887 ATCTTATCTCTTTGAAGTTGCAGTGGAGCAGTTTGAAGCCACAA
1 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAA
* * * *
8308931 GTCTTATCTCCTTGAAGTTGCAGTCGAGCAGACTGAAGGTAACAA
1 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCT-ACAA
* * * * ** *
8308976 ATCTTATTTCCCTAAAGTTACAGTGGAATAGATTGAAGCTATAAATTACAG
1 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGC-------TACAA
* * *
8309027 ATCTTATCT-CTCTGAAGTTACAGTAGAGCAGA-TCATA--TA-AA
1 ATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGATTGA-AGCTACAA
* * *
8309068 ATCTTATCTCCCTAAAGTTGCAGTGGATCAGATTGAAGATAAGCTACAA
1 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATT---G--AAGCTACAA
* * *
8309117 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAG-TCACAAA
1 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCT-AC-AA
* * * * *
8309162 AT-TTATCT-CTCTGAAGTTGCAGTAGAGAAGGTTAAAGTTACAA
1 ATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGATTGAAGCTACAA
** * * * *
8309205 GCCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAGCTACGA
1 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAA
* * * * *
8309249 ATCATATCTCCTTGAAGTTGCATTAGAGCAGATTTAAGCAACAA
1 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAA
8309293 GACGCAGTGG
Statistics
Matches: 275, Mismatches: 61, Indels: 52
0.71 0.16 0.13
Matches are distributed among these distances:
41 26 0.09
42 4 0.01
43 4 0.01
44 133 0.48
45 39 0.14
46 1 0.00
47 1 0.00
48 2 0.01
49 33 0.12
50 3 0.01
51 28 0.10
52 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.30
Consensus pattern (44 bp):
ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAA
Found at i:8308968 original size:285 final size:285
Alignment explanation
Indices: 8308164--8308988 Score: 1025
Period size: 285 Copynumber: 2.9 Consensus size: 285
8308154 GATTGAAGTC
* * * *
8308164 ATTATGGCGGATCTTATATTCCTGAAGTTGT-AGAGGAACAAATTGAAGCCACCAGCTTATCTCT
1 ATTATGGCGGATCTTATCTTCCTGAAGTT-TCAGTGGAACAGATTGAAGCCACCAGCTTATCTCC
* * * * **
8308228 CTGAAGTTGCAGCAGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGGCGTTATAGTGGAACAG
65 CTGAAGTTGAAGCGGAGCTGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAG
* * * *
8308293 ATTAAAGCTACAAATTATGGCAAATCTTATCTCCTTGAAATTGTAGTGCAGCAGTTTGAAGCCAC
130 ATTAAAGCTACAAATTATGGCAGATCTTATCTCTTTGAAGTTGTAGTGGAGCAGTTTGAAGCCAC
* * * *
8308358 AAATCTTATCTCCTTGAAGTTACAGCGGAGCAGACTGAAGACAGTGAATCTTATTTCCCTGGTGT
195 AAGTCTTATCTCCTTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGT
8308423 TGCAGTAGAACAGATTAAAGTAACAA
260 TGCAGTAGAACAGATTAAAGTAACAA
* * * ** ** *
8308449 ATTATGGAGGATCTTATCTTCCTGAAGTTGCAGTTGAGTAGATTGAAGCCATTAGTCATATCTCC
1 ATTATGGCGGATCTTATCTTCCTGAAGTTTCAGTGGAACAGATTGAAGCCACCAG-CTTATCTCC
*
8308514 CTGAAGTT-ACAGCGGAG-TAGACTGAATACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
65 CTGAAGTTGA-AGCGGAGCT-GACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * ** * * * ** *
8308577 AGATTAAAACAACAAATTATAACAGATCTTATCT-TCCTAAAGTTGTAGTAGAGCAAATTAAAGC
128 AGATTAAAGCTACAAATTATGGCAGATCTTATCTCT-TTGAAGTTGTAGTGGAGCAGTTTGAAGC
* * * * * * * *
8308641 CACCAGCCTTATCTCCCTAAAATTGCGGCGGACCAAACTGAAGACAGCGAATCTTATTTCCCT-G
192 CACAAGTCTTATCTCCTTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGG
8308705 CGTTGCAGTAGAACAGATTAAAGCT-ACAA
257 CGTTGCAGTAGAACAGATTAAAG-TAACAA
* *
8308734 ATTATAGCGGATCTTATCTTCCTGAAGTTTCAGTGGAACAGATTAAAGCCACCAGCCTTATCTCC
1 ATTATGGCGGATCTTATCTTCCTGAAGTTTCAGTGGAACAGATTGAAGCCACCAG-CTTATCTCC
* * *
8308799 CTGAAGTTGAAGCGGAGCTGACTAAAGACAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAATAG
65 CTGAAGTTGAAGCGGAGCTGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAG
* *
8308864 ATTAAAGCTACAAATTATGGCGGATCTTATCTCTTTGAAGTTGCAGTGGAGCAGTTTGAAGCCAC
130 ATTAAAGCTACAAATTATGGCAGATCTTATCTCTTTGAAGTTGTAGTGGAGCAGTTTGAAGCCAC
** * *
8308929 AAGTCTTATCTCCTTGAAGTTGCAGTC-GAGCAGACTGAAGGTAACAAATCTTATTTCCCT
195 AAGTCTTATCTCCTTGAAGTTGCAG-CGGAGCAGACTGAAGACAGCGAATCTTATTTCCCT
8308989 AAAGTTACAG
Statistics
Matches: 446, Mismatches: 84, Indels: 20
0.81 0.15 0.04
Matches are distributed among these distances:
285 279 0.63
286 167 0.37
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (285 bp):
ATTATGGCGGATCTTATCTTCCTGAAGTTTCAGTGGAACAGATTGAAGCCACCAGCTTATCTCCC
TGAAGTTGAAGCGGAGCTGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGA
TTAAAGCTACAAATTATGGCAGATCTTATCTCTTTGAAGTTGTAGTGGAGCAGTTTGAAGCCACA
AGTCTTATCTCCTTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTT
GCAGTAGAACAGATTAAAGTAACAA
Found at i:8308981 original size:428 final size:428
Alignment explanation
Indices: 8308173--8308988 Score: 1058
Period size: 428 Copynumber: 1.9 Consensus size: 428
8308163 CATTATGGCG
* * * * *
8308173 GATCTTATATTCCTGAAGTTGTAGAGGAACAAATTGAAGCCACCAGCTTATCTCTCTGAAGTTGC
1 GATCTTATATTCCTAAAGTTGTAGAGGAACAAATTAAAGCCACCAGCTTATCTCCCTAAAATTGC
* * * * *
8308238 AGCAGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGGCGTTATAGTGGAACAGATTAAAGCTA
66 AGCAGACCAAACTGAAGACAGCGAATCTTATTTCCCTGGCGTTACAGTAGAACAGATTAAAGCTA
* * * * *
8308303 CAAATTATGGCAAATCTTATCTCCTTGAAATTGTAGTGCAGCAGTTTGAAGCCACAAATCTTATC
131 CAAATTATAGCAAATCTTATCTCCTTGAAATTGTAGTGCAACAGATTAAAGCCACAAACCTTATC
* * * * *
8308368 TCCTTGAAGTTACAGCGGAGCAGACTGAAGACAGTGAATCTTATTTCCCTGGTGTTGCAGTAGAA
196 TCCCTGAAGTTACAGCGGAGCAGACTAAAGACAGCGAATCTTATTTCCCTAGCGTTGCAGTAGAA
* *
8308433 CAGATTAAAGTAACAAATTATGGAGGATCTTATCTTCCTGAAGTTGCAGTTGAGTAGATTGAAGC
261 CAGATTAAAGTAACAAATTATGGAGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGC
** * *
8308498 CATTAGTCATATCTCCCTGAAGTTACAGCGGAGTAGACTGAATACAGCGAATCTTATTTCCCTGG
326 CACAAGTCATATCTCCCTGAAGTTACAGCGGAGCAGACTGAATACAGCAAATCTTATTTCCCTGG
8308563 CGTTGCAGTGGAACAGATTAAAACAACAAATTATAACA
391 CGTTGCAGTGGAACAGATTAAAACAACAAATTATAACA
* *
8308601 GATCTTATCTTCCTAAAGTTGTAGTA-GAGCAAATTAAAGCCACCAGCCTTATCTCCCTAAAATT
1 GATCTTATATTCCTAAAGTTGTAG-AGGAACAAATTAAAGCCACCAG-CTTATCTCCCTAAAATT
* * *
8308665 GCGGCGGACCAAACTGAAGACAGCGAATCTTATTTCCCT-GCGTTGCAGTAGAACAGATTAAAGC
64 GCAGCAGACCAAACTGAAGACAGCGAATCTTATTTCCCTGGCGTTACAGTAGAACAGATTAAAGC
** * * * *
8308729 TACAAATTATAGCGGATCTTATCTTCC-TGAAGTT-TCAGTGGAACAGATTAAAGCCACCAGCCT
129 TACAAATTATAGCAAATCTTATC-TCCTTGAAATTGT-AGTGCAACAGATTAAAGCCACAAACCT
*
8308792 TATCTCCCTGAAGTTGA-AGCGGAGCTGACTAAAGACAGCGAATCTTATTTCCCTAGCGTTGCAG
192 TATCTCCCTGAAGTT-ACAGCGGAGCAGACTAAAGACAGCGAATCTTATTTCCCTAGCGTTGCAG
* * * * *
8308856 TGGAATAGATTAAAGCT-ACAAATTATGGCGGATCTTATC-TCTTTGAAGTTGCAGTGGAGCAGT
256 TAGAACAGATTAAAG-TAACAAATTATGGAGGATCTTATCTTC-CTGAAGTTGCAGTGGAGCAGA
* * *
8308919 TTGAAGCCACAAGTCTTATCTCCTTGAAGTTGCAGTC-GAGCAGACTGAAGGTA-A-CAAATCTT
319 TTGAAGCCACAAGTCATATCTCCCTGAAGTTACAG-CGGAGCAGACTGAA--TACAGCAAATCTT
8308981 ATTTCCCT
381 ATTTCCCT
8308989 AAAGTTACAG
Statistics
Matches: 332, Mismatches: 46, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
427 3 0.01
428 271 0.82
429 56 0.17
430 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (428 bp):
GATCTTATATTCCTAAAGTTGTAGAGGAACAAATTAAAGCCACCAGCTTATCTCCCTAAAATTGC
AGCAGACCAAACTGAAGACAGCGAATCTTATTTCCCTGGCGTTACAGTAGAACAGATTAAAGCTA
CAAATTATAGCAAATCTTATCTCCTTGAAATTGTAGTGCAACAGATTAAAGCCACAAACCTTATC
TCCCTGAAGTTACAGCGGAGCAGACTAAAGACAGCGAATCTTATTTCCCTAGCGTTGCAGTAGAA
CAGATTAAAGTAACAAATTATGGAGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGC
CACAAGTCATATCTCCCTGAAGTTACAGCGGAGCAGACTGAATACAGCAAATCTTATTTCCCTGG
CGTTGCAGTGGAACAGATTAAAACAACAAATTATAACA
Found at i:8309093 original size:92 final size:90
Alignment explanation
Indices: 8308974--8309149 Score: 255
Period size: 90 Copynumber: 1.9 Consensus size: 90
8308964 TGAAGGTAAC
* * * *
8308974 AAATCTTATTTCCCTAAAGTTACAGTGGAAT-AGATTGAAGCTATAAATTACAGATCTTATCTCT
1 AAATCTTATCTCCCTAAAGTTACAGTGG-ATCAGATTGAAG--ATAAACTACAAATCTTATCTCC
8309038 CTGAAGTTACAGTAGAGCAGATCATATA
63 CTGAAGTTACAGTAGAGCAGATCATATA
* *
8309066 AAATCTTATCTCCCTAAAGTTGCAGTGGATCAGATTGAAGATAAGCTACAAATCTTATCTCCCTG
1 AAATCTTATCTCCCTAAAGTTACAGTGGATCAGATTGAAGATAAACTACAAATCTTATCTCCCTG
*
8309131 AAGTTACAGTGGAGCAGAT
66 AAGTTACAGTAGAGCAGAT
8309150 TAAAGTCACA
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
90 39 0.51
91 2 0.03
92 35 0.46
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (90 bp):
AAATCTTATCTCCCTAAAGTTACAGTGGATCAGATTGAAGATAAACTACAAATCTTATCTCCCTG
AAGTTACAGTAGAGCAGATCATATA
Found at i:8309480 original size:14 final size:15
Alignment explanation
Indices: 8309458--8309491 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
8309448 TCTCCGGGCC
8309458 TAAAACCAAAA-AAA
1 TAAAACCAAAACAAA
*
8309472 TAAAGCCAAAACAAA
1 TAAAACCAAAACAAA
8309487 TAAAA
1 TAAAA
8309492 AAGTCCAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.74, C:0.15, G:0.03, T:0.09
Consensus pattern (15 bp):
TAAAACCAAAACAAA
Found at i:8310886 original size:25 final size:25
Alignment explanation
Indices: 8310829--8310879 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
8310819 TTATAATTGG
*
8310829 TTTGTTTTATTTTTATTTCTTTCAT
1 TTTGTTTTATTTTTATTTATTTCAT
8310854 TTTGTTTTATTTTTATTTATTTCAT
1 TTTGTTTTATTTTTATTTATTTCAT
8310879 T
1 T
8310880 ATTTTTTTGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.14, C:0.06, G:0.04, T:0.76
Consensus pattern (25 bp):
TTTGTTTTATTTTTATTTATTTCAT
Found at i:8313923 original size:42 final size:42
Alignment explanation
Indices: 8313874--8314032 Score: 167
Period size: 42 Copynumber: 3.8 Consensus size: 42
8313864 AGGCTAAATA
* *
8313874 GAAGCTCATGAGAATTAAACAGAAACCCATAAGGGTTGAACG
1 GAAGCTCATAAGAGTTAAACAGAAACCCATAAGGGTTGAACG
* * * * *
8313916 GAAGCTCATAAGAGCTGAAC-GAAAACTCATAAGGGTTAAACA
1 GAAGCTCATAAGAGTTAAACAG-AAACCCATAAGGGTTGAACG
* * * *
8313958 GAAGCTCAAAAGAGTTGAACGGAAACCCATTAGGGTTGAACG
1 GAAGCTCATAAGAGTTAAACAGAAACCCATAAGGGTTGAACG
* * * *
8314000 GAAACTCATATGAGTTAAACAGAAGCTCATAAG
1 GAAGCTCATAAGAGTTAAACAGAAACCCATAAG
8314033 AGCTAAACGG
Statistics
Matches: 94, Mismatches: 21, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
41 1 0.01
42 92 0.98
43 1 0.01
ACGTcount: A:0.43, C:0.16, G:0.23, T:0.18
Consensus pattern (42 bp):
GAAGCTCATAAGAGTTAAACAGAAACCCATAAGGGTTGAACG
Found at i:8313927 original size:21 final size:21
Alignment explanation
Indices: 8313895--8314045 Score: 131
Period size: 21 Copynumber: 7.2 Consensus size: 21
8313885 GAATTAAACA
* *
8313895 GAAACCCATAAGGGTTGAACG
1 GAAACTCATAAGAGTTGAACG
* *
8313916 GAAGCTCATAAGAGCTGAACG
1 GAAACTCATAAGAGTTGAACG
* * * *
8313937 AAAACTCATAAGGGTTAAACA
1 GAAACTCATAAGAGTTGAACG
* *
8313958 GAAGCTCAAAAGAGTTGAACG
1 GAAACTCATAAGAGTTGAACG
* * *
8313979 GAAACCCATTAGGGTTGAACG
1 GAAACTCATAAGAGTTGAACG
* * *
8314000 GAAACTCATATGAGTTAAACA
1 GAAACTCATAAGAGTTGAACG
* * *
8314021 GAAGCTCATAAGAGCTAAACG
1 GAAACTCATAAGAGTTGAACG
8314042 GAAA
1 GAAA
8314046 GTAAACACGA
Statistics
Matches: 98, Mismatches: 32, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 98 1.00
ACGTcount: A:0.43, C:0.17, G:0.24, T:0.17
Consensus pattern (21 bp):
GAAACTCATAAGAGTTGAACG
Found at i:8313977 original size:63 final size:63
Alignment explanation
Indices: 8313878--8314045 Score: 192
Period size: 63 Copynumber: 2.7 Consensus size: 63
8313868 TAAATAGAAG
* * * * * * *
8313878 CTCATGAGAATTAAACAGAAACCCATAAGGGTTGAACGGAAGCTCATAAGAGCTGAACGAAAA
1 CTCATAAGAGTTAAACAGAAGCTCATAAGAGTTGAACGGAAACCCATAAGAGCTGAACGAAAA
* * * * * *
8313941 CTCATAAGGGTTAAACAGAAGCTCAAAAGAGTTGAACGGAAACCCATTAGGGTTGAACGGAAA
1 CTCATAAGAGTTAAACAGAAGCTCATAAGAGTTGAACGGAAACCCATAAGAGCTGAACGAAAA
* * *
8314004 CTCATATGAGTTAAACAGAAGCTCATAAGAGCTAAACGGAAA
1 CTCATAAGAGTTAAACAGAAGCTCATAAGAGTTGAACGGAAA
8314046 GTAAACACGA
Statistics
Matches: 87, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
63 87 1.00
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.17
Consensus pattern (63 bp):
CTCATAAGAGTTAAACAGAAGCTCATAAGAGTTGAACGGAAACCCATAAGAGCTGAACGAAAA
Found at i:8315316 original size:42 final size:42
Alignment explanation
Indices: 8315253--8315351 Score: 144
Period size: 42 Copynumber: 2.4 Consensus size: 42
8315243 TCGATATTTA
* * *
8315253 GCACTAAGTGTGCGAAGTTAAAATAATGATGTTGGATAATAG
1 GCACTAAGTGTGCGAAATTAAAATAATGATGTTGAATAACAG
* * *
8315295 GCACTAAGTGTGTGAAATTAAAATGATGATGTTGAATAACGG
1 GCACTAAGTGTGCGAAATTAAAATAATGATGTTGAATAACAG
8315337 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
8315352 TACTAAGAGC
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.27
Consensus pattern (42 bp):
GCACTAAGTGTGCGAAATTAAAATAATGATGTTGAATAACAG
Found at i:8327469 original size:54 final size:54
Alignment explanation
Indices: 8327366--8327471 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 54
8327356 AATAAATTAT
* *
8327366 TTAAAACTTTATTTCTAAAATTAAAATTTATTATATACATTATTTCTAAAATCA
1 TTAAAACTTTATTTCTAAAATTAAAATTTATTATAAACATTATTCCTAAAATCA
* * * *
8327420 TTAAAACTTTTTTTCTAAAATT-TAATATTATT-TAAAACTTTGTTCCTAAAAT
1 TTAAAACTTTATTTCTAAAATTAAAAT-TTATTAT-AAACATTATTCCTAAAAT
8327472 AAAAAATAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
53 4 0.09
54 40 0.91
ACGTcount: A:0.42, C:0.09, G:0.01, T:0.48
Consensus pattern (54 bp):
TTAAAACTTTATTTCTAAAATTAAAATTTATTATAAACATTATTCCTAAAATCA
Found at i:8336057 original size:20 final size:20
Alignment explanation
Indices: 8336032--8336071 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8336022 GGACAAGCAC
*
8336032 CATTAGGAATGTGATGTCGT
1 CATTAGGAATCTGATGTCGT
8336052 CATTAGGAATCTGATGTCGT
1 CATTAGGAATCTGATGTCGT
8336072 TTGTCACCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.12, G:0.28, T:0.35
Consensus pattern (20 bp):
CATTAGGAATCTGATGTCGT
Found at i:8336607 original size:20 final size:20
Alignment explanation
Indices: 8336579--8336622 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
8336569 ATTTTAACTT
* * *
8336579 AAATTTTAACATTATCCTTG
1 AAATATTAACATTAACCTTA
*
8336599 AAATATTAACCTTAACCTTA
1 AAATATTAACATTAACCTTA
8336619 AAAT
1 AAAT
8336623 TTTTTATTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.39
Consensus pattern (20 bp):
AAATATTAACATTAACCTTA
Found at i:8349022 original size:12 final size:12
Alignment explanation
Indices: 8349005--8349031 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8348995 TAGTCTAGTC
8349005 ATTTAGTATAAA
1 ATTTAGTATAAA
8349017 ATTTAGTATAAA
1 ATTTAGTATAAA
8349029 ATT
1 ATT
8349032 CTATAGAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (12 bp):
ATTTAGTATAAA
Found at i:8351453 original size:22 final size:21
Alignment explanation
Indices: 8351425--8351484 Score: 86
Period size: 22 Copynumber: 2.9 Consensus size: 21
8351415 GGGGTTTGAG
8351425 TTTTTTTCTATATTTTTTAAGT
1 TTTTTTTCTATATTTTTT-AGT
*
8351447 TTTTTTTCTATATTCTTTAGT
1 TTTTTTTCTATATTTTTTAGT
*
8351468 TTTTTTTATA-ATTTTTT
1 TTTTTTTCTATATTTTTT
8351485 TAGATGTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
20 6 0.17
21 12 0.34
22 17 0.49
ACGTcount: A:0.17, C:0.05, G:0.03, T:0.75
Consensus pattern (21 bp):
TTTTTTTCTATATTTTTTAGT
Found at i:8351486 original size:21 final size:20
Alignment explanation
Indices: 8351423--8351487 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 20
8351413 TAGGGGTTTG
*
8351423 AGTTTTTTTCTATATTTTTTA
1 AGTTTTTTT-TATATTTTTTT
* *
8351444 AGTTTTTTTTCTATATTCTTT
1 AGTTTTTTTTATAT-TTTTTT
8351465 AGTTTTTTTTATAATTTTTTT
1 AGTTTTTTTTAT-ATTTTTTT
8351486 AG
1 AG
8351488 ATGTAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 4 0.11
21 31 0.84
22 2 0.05
ACGTcount: A:0.18, C:0.05, G:0.06, T:0.71
Consensus pattern (20 bp):
AGTTTTTTTTATATTTTTTT
Found at i:8353722 original size:15 final size:14
Alignment explanation
Indices: 8353698--8353731 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
8353688 TACCTACGTA
*
8353698 TATATGTACATATTT
1 TATATATACATA-TT
8353713 TATATATACATATT
1 TATATATACATATT
8353727 TATAT
1 TATAT
8353732 GTTCTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (14 bp):
TATATATACATATT
Found at i:8360125 original size:16 final size:16
Alignment explanation
Indices: 8360104--8360151 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
8360094 TCCATGTCAG
8360104 GATTTGTGTTTTAATT
1 GATTTGTGTTTTAATT
* *
8360120 GATTTGGAGTTTGAATT
1 GATTT-GTGTTTTAATT
*
8360137 AATTTGTGTTTTAAT
1 GATTTGTGTTTTAAT
8360152 GTTATAGGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
16 13 0.50
17 13 0.50
ACGTcount: A:0.23, C:0.00, G:0.21, T:0.56
Consensus pattern (16 bp):
GATTTGTGTTTTAATT
Found at i:8364254 original size:43 final size:43
Alignment explanation
Indices: 8364193--8364277 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
8364183 TTCAAATCTG
* * *
8364193 CATATATAAACCAACATTAATTTAATTGTTCAGATGGAATAGA
1 CATATAGAAACCAACATTAATTTAATTGCTCAAATGGAATAGA
8364236 CATATAGAAACCAACATTAATTTAATTGCTCAAATGGAATAG
1 CATATAGAAACCAACATTAATTTAATTGCTCAAATGGAATAG
8364278 GAGGAGGAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.31
Consensus pattern (43 bp):
CATATAGAAACCAACATTAATTTAATTGCTCAAATGGAATAGA
Found at i:8366141 original size:49 final size:49
Alignment explanation
Indices: 8366043--8366142 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 49
8366033 ACCTCCTGGG
8366043 TTTTGCCTATAAAACGCTGTCGTTAATTAGTAGGGGAACTTTGCAGGGT
1 TTTTGCCTATAAAACGCTGTCGTTAATTAGTAGGGGAACTTTGCAGGGT
*
8366092 TTTTGCCTATAAAAACGCTGTCGTTAATTCGTAGGGGAACTTTGC-GGGT
1 TTTTGCCTAT-AAAACGCTGTCGTTAATTAGTAGGGGAACTTTGCAGGGT
8366141 TT
1 TT
8366143 GGGCCTAATA
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
49 16 0.33
50 33 0.67
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (49 bp):
TTTTGCCTATAAAACGCTGTCGTTAATTAGTAGGGGAACTTTGCAGGGT
Found at i:8369264 original size:22 final size:22
Alignment explanation
Indices: 8369239--8369282 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
8369229 TCTCCAAACT
8369239 TTAAAACATTCTAA-TTATATCA
1 TTAAAACATTC-AAGTTATATCA
**
8369261 TTAAATTATTCAAGTTATATCA
1 TTAAAACATTCAAGTTATATCA
8369283 ATTAGGTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.43
Consensus pattern (22 bp):
TTAAAACATTCAAGTTATATCA
Found at i:8371603 original size:17 final size:17
Alignment explanation
Indices: 8371581--8371614 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8371571 TTTTATTTTT
*
8371581 ATATAAAAAATTAAAAA
1 ATATAAAAAATCAAAAA
*
8371598 ATATAATAAATCAAAAA
1 ATATAAAAAATCAAAAA
8371615 CACTAAAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (17 bp):
ATATAAAAAATCAAAAA
Found at i:8372012 original size:20 final size:20
Alignment explanation
Indices: 8371987--8372026 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8371977 AATTTTAATA
8371987 TATTTTAAAAATAATTTTTT
1 TATTTTAAAAATAATTTTTT
*
8372007 TATTTTTAAAATAATTTTTT
1 TATTTTAAAAATAATTTTTT
8372027 GGTGTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTTTAAAAATAATTTTTT
Found at i:8372034 original size:20 final size:20
Alignment explanation
Indices: 8371994--8372034 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8371984 ATATATTTTA
* *
8371994 AAAATAATTTTTTTATTTTT
1 AAAATAATTTTTTGATGTTT
*
8372014 AAAATAATTTTTTGGTGTTT
1 AAAATAATTTTTTGATGTTT
8372034 A
1 A
8372035 TTAAAAGAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (20 bp):
AAAATAATTTTTTGATGTTT
Found at i:8372640 original size:31 final size:31
Alignment explanation
Indices: 8372602--8372663 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
8372592 TAAATAAATT
8372602 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
8372633 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
8372664 TAATTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:8373231 original size:19 final size:19
Alignment explanation
Indices: 8373209--8373252 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
8373199 AAAAAAACAG
8373209 AAAAAAGCAAAAAGCGCAA
1 AAAAAAGCAAAAAGCGCAA
8373228 AAAAAAGCAAAAAGCGCAA
1 AAAAAAGCAAAAAGCGCAA
8373247 AAAAAA
1 AAAAAA
8373253 AAGTTGCCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.73, C:0.14, G:0.14, T:0.00
Consensus pattern (19 bp):
AAAAAAGCAAAAAGCGCAA
Found at i:8375475 original size:41 final size:41
Alignment explanation
Indices: 8375425--8375600 Score: 280
Period size: 41 Copynumber: 4.3 Consensus size: 41
8375415 AATTCATCAT
* *
8375425 ATTCGGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
8375466 ATTCAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
8375507 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
8375548 ATTTAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
8375589 ATTCATATCACC
1 ATTCAGATCACC
8375601 AATTCCAAAC
Statistics
Matches: 123, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 123 1.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
Found at i:8375568 original size:82 final size:82
Alignment explanation
Indices: 8375431--8375600 Score: 331
Period size: 82 Copynumber: 2.1 Consensus size: 82
8375421 TCATATTCGG
8375431 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
8375496 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
*
8375513 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTTAGATCACCGGCACTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
8375578 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
8375595 ATCACC
1 ATCACC
8375601 AATTCCAAAC
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 87 1.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (82 bp):
ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
TTTATAACCTGATTCAT
Found at i:8383106 original size:41 final size:41
Alignment explanation
Indices: 8383056--8383231 Score: 280
Period size: 41 Copynumber: 4.3 Consensus size: 41
8383046 AATTCATCAT
* *
8383056 ATTCGGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
8383097 ATTCAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
8383138 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
8383179 ATTTAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
8383220 ATTCATATCACC
1 ATTCAGATCACC
8383232 AATTCCAAAC
Statistics
Matches: 123, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 123 1.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
Found at i:8383199 original size:82 final size:82
Alignment explanation
Indices: 8383062--8383231 Score: 331
Period size: 82 Copynumber: 2.1 Consensus size: 82
8383052 TCATATTCGG
8383062 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
8383127 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
*
8383144 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTTAGATCACCGGCACTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
8383209 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
8383226 ATCACC
1 ATCACC
8383232 AATTCCAAAC
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 87 1.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (82 bp):
ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
TTTATAACCTGATTCAT
Found at i:8391892 original size:34 final size:35
Alignment explanation
Indices: 8391834--8391900 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
8391824 CAAACACCAG
*
8391834 AAAATATTTTCCAATAAATCATTTTACAAAAAAGT
1 AAAATATTTTCCAAGAAATCATTTTACAAAAAAGT
*
8391869 AAAATATTTTCC-AGAAATCATTTTACGAAAAA
1 AAAATATTTTCCAAGAAATCATTTTACAAAAAA
8391901 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 18 0.60
35 12 0.40
ACGTcount: A:0.51, C:0.12, G:0.04, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAAGAAATCATTTTACAAAAAAGT
Found at i:8401528 original size:18 final size:18
Alignment explanation
Indices: 8401505--8401542 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
8401495 GTGGCTTTAT
8401505 GTGATTACTTCAACTCCG
1 GTGATTACTTCAACTCCG
8401523 GTGATTACTTCAACTCCG
1 GTGATTACTTCAACTCCG
8401541 GT
1 GT
8401543 AACCCTGAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (18 bp):
GTGATTACTTCAACTCCG
Found at i:8403779 original size:29 final size:30
Alignment explanation
Indices: 8403721--8403780 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 30
8403711 ATCAAATTAT
* **
8403721 AAAATTTTAAGAGAATTTTATAATTTTTTA
1 AAAATTTGAAGAGAATTTTATAATAATTTA
8403751 AAAATTTGAA-AGAATTTTA-AAGTAATTTA
1 AAAATTTGAAGAGAATTTTATAA-TAATTTA
8403780 A
1 A
8403781 TCAAATTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 2 0.08
29 15 0.58
30 9 0.35
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.43
Consensus pattern (30 bp):
AAAATTTGAAGAGAATTTTATAATAATTTA
Found at i:8431175 original size:23 final size:22
Alignment explanation
Indices: 8431149--8431203 Score: 76
Period size: 23 Copynumber: 2.5 Consensus size: 22
8431139 AAAAATTAAT
8431149 ATAAATTAAATAAAATTTATTTA
1 ATAAATTAAATAAAATTT-TTTA
*
8431172 ATAAAATAAATAAAATTTTTTA
1 ATAAATTAAATAAAATTTTTTA
*
8431194 A-AATTTAAAT
1 ATAAATTAAAT
8431204 TCTTCTGTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 7 0.24
22 5 0.17
23 17 0.59
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
ATAAATTAAATAAAATTTTTTA
Found at i:8431786 original size:24 final size:26
Alignment explanation
Indices: 8431743--8431796 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 26
8431733 TGAGTTAGTG
8431743 ATTTAATATAAATATATAAT-T-ATT
1 ATTTAATATAAATATATAATATAATT
*
8431767 ATTTAATATATATA-ATTAATATAATT
1 ATTTAATATAAATATA-TAATATAATT
8431793 ATTT
1 ATTT
8431797 CTTATAACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 1 0.04
24 17 0.65
25 1 0.04
26 7 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (26 bp):
ATTTAATATAAATATATAATATAATT
Found at i:8444896 original size:18 final size:20
Alignment explanation
Indices: 8444860--8444897 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
8444850 GATGTTACTG
*
8444860 AATATTATTTATATGATTAT
1 AATATTATTAATATGATTAT
8444880 AATATT-TTAATAT-ATTAT
1 AATATTATTAATATGATTAT
8444898 CTTGTTAGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 6 0.35
20 6 0.35
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
AATATTATTAATATGATTAT
Found at i:8454527 original size:21 final size:21
Alignment explanation
Indices: 8454498--8454538 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8454488 ATCTGCTCAA
* *
8454498 ACTCTACCTGTTTTGGAGTAC
1 ACTCCACCTGTTGTGGAGTAC
8454519 ACTCCACCTGTTGTGGAGTA
1 ACTCCACCTGTTGTGGAGTA
8454539 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (21 bp):
ACTCCACCTGTTGTGGAGTAC
Found at i:8457219 original size:52 final size:49
Alignment explanation
Indices: 8457134--8457500 Score: 440
Period size: 46 Copynumber: 7.6 Consensus size: 49
8457124 TTTGAGTACT
* **
8457134 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
8457180 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
8457232 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
8457278 TCTGATCAAGTGAC---AAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
8457324 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
8457376 TCTGATCAAGTGATAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* **
8457428 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
8457474 TCTGATCAAGTGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
8457501 GCTACACTTA
Statistics
Matches: 289, Mismatches: 18, Indels: 28
0.86 0.05 0.08
Matches are distributed among these distances:
46 154 0.53
48 1 0.00
49 2 0.01
50 1 0.00
52 131 0.45
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:8457254 original size:98 final size:97
Alignment explanation
Indices: 8457134--8457500 Score: 501
Period size: 98 Copynumber: 3.7 Consensus size: 97
8457124 TTTGAGTACT
* *
8457134 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-
*
8457199 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
65 GAAAGTGATAAGTGATAGCTTCGGCTATACTTA
* *
8457232 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
8457292 AAAGTGATAAGTGATAGCTTCAGCTACACTTA
66 AAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
8457324 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTG---A-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
*
8457389 TAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
60 CAAGTG-AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* * *
8457428 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGT
8457493 GATAAGTG
65 GA-AAGTG
8457501 GCTACACTTA
Statistics
Matches: 239, Mismatches: 16, Indels: 27
0.85 0.06 0.10
Matches are distributed among these distances:
92 41 0.17
95 1 0.00
96 1 0.00
98 144 0.60
99 10 0.04
101 1 0.00
104 41 0.17
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (97 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:8457395 original size:7 final size:7
Alignment explanation
Indices: 8457378--8457411 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
8457368 TACACTTATC
8457378 TGATCAAG
1 TGAT-AAG
8457386 TGATAAG
1 TGATAAG
*
8457393 TGAAAAG
1 TGATAAG
8457400 TGATAAG
1 TGATAAG
8457407 TGATA
1 TGATA
8457412 GCTTCGGCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.44, C:0.03, G:0.26, T:0.26
Consensus pattern (7 bp):
TGATAAG
Found at i:8457482 original size:196 final size:196
Alignment explanation
Indices: 8457148--8457500 Score: 607
Period size: 196 Copynumber: 1.8 Consensus size: 196
8457138 ATCAAGTGAT
* * *
8457148 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
* * * *
8457213 ATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
8457278 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
131 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
8457343 G
196 G
* * *
8457344 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGATAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
*
8457409 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
8457474 TCTGATCAAGTGACAAAGTGATAAGTG
131 TCTGATCAAGTGACAAAGTGATAAGTG
8457501 GCTACACTTA
Statistics
Matches: 146, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
196 146 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (196 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
G
Found at i:8457508 original size:37 final size:37
Alignment explanation
Indices: 8457464--8457574 Score: 204
Period size: 37 Copynumber: 3.0 Consensus size: 37
8457454 GATAGCTTTA
**
8457464 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
8457501 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
8457538 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
8457575 ATCATACGTA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:8457537 original size:150 final size:150
Alignment explanation
Indices: 8457134--8457489 Score: 487
Period size: 150 Copynumber: 2.4 Consensus size: 150
8457124 TTTGAGTACT
* * * *
8457134 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* * * *
8457199 GAAAGTGATAAGTAATAGCTTC-G---GCTATACTTATC---TGATCAAGTGATAAAGTGATAAG
66 GAAAGTGATAACT-ATAGCTTCAGCAAACTAAACTGATCAAGTGATCAAGTGATAAAGTGATAAG
8457257 TGATAGCTTCGGCTATACTTA
130 TGATAGCTTCGGCTATACTTA
*
8457278 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* * * * *
8457343 GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAT-AAGTGA-AAAGTGATAA
66 GAAAGTGATAACT-ATAGCTTCAGC-AAACTAAACTGATCAAGTGATCAAGTGATAAAGTGATAA
8457406 GTGATAGCTTCGGCTATACTTA
129 GTGATAGCTTCGGCTATACTTA
*
8457428 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAA
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAA
8457490 AGTGATAAGT
Statistics
Matches: 193, Mismatches: 11, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
144 83 0.43
145 1 0.01
149 7 0.04
150 92 0.48
151 6 0.03
152 4 0.02
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (150 bp):
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAACTATAGCTTCAGCAAACTAAACTGATCAAGTGATCAAGTGATAAAGTGATAAGT
GATAGCTTCGGCTATACTTA
Found at i:8467761 original size:21 final size:21
Alignment explanation
Indices: 8467737--8467802 Score: 64
Period size: 20 Copynumber: 3.2 Consensus size: 21
8467727 ATTTTCATAA
8467737 TTTTAATAT-TTTTTGATAATT
1 TTTTAATATCTTTTTG-TAATT
**
8467758 TTTTCTTATCTTTTTGTAATT
1 TTTTAATATCTTTTTGTAATT
* * *
8467779 TTTT-ATTTCTTTTTCTGATT
1 TTTTAATATCTTTTTGTAATT
8467799 TTTT
1 TTTT
8467803 TATTTGAAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
20 16 0.42
21 16 0.42
22 6 0.16
ACGTcount: A:0.17, C:0.06, G:0.05, T:0.73
Consensus pattern (21 bp):
TTTTAATATCTTTTTGTAATT
Found at i:8467789 original size:20 final size:20
Alignment explanation
Indices: 8467746--8467807 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 20
8467736 ATTTTAATAT
*
8467746 TTTTTGATAATTTTTTCTTATC
1 TTTTTG-TAATTTTTTATT-TC
8467768 TTTTTGTAATTTTTTATTTC
1 TTTTTGTAATTTTTTATTTC
* *
8467788 TTTTTCTGATTTTTTTATTT
1 TTTTTGT-AATTTTTTATTT
8467808 GAAATTTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 8 0.22
21 22 0.61
22 6 0.17
ACGTcount: A:0.15, C:0.06, G:0.05, T:0.74
Consensus pattern (20 bp):
TTTTTGTAATTTTTTATTTC
Found at i:8470952 original size:21 final size:22
Alignment explanation
Indices: 8470928--8470977 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
8470918 TTATGTGTCC
*
8470928 ATATTATATATT-ATAAAAATA
1 ATATTATATATTCATAAAAAAA
8470949 ATA-TACT-TATTCATAAAAAAA
1 ATATTA-TATATTCATAAAAAAA
8470970 ATATTATA
1 ATATTATA
8470978 GTGTTTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
20 6 0.25
21 16 0.67
22 2 0.08
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (22 bp):
ATATTATATATTCATAAAAAAA
Found at i:8473678 original size:21 final size:22
Alignment explanation
Indices: 8473653--8473696 Score: 70
Period size: 24 Copynumber: 1.9 Consensus size: 22
8473643 CACTCTTCCT
8473653 TTTCTTCATCGATTATTGCAGG
1 TTTCTTCATCGATTATTGCAGG
8473675 TTCTTCTTCATCGATTATTGCA
1 -T-TTCTTCATCGATTATTGCA
8473697 CTGTTCACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (22 bp):
TTTCTTCATCGATTATTGCAGG
Found at i:8473711 original size:24 final size:24
Alignment explanation
Indices: 8473660--8473714 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
8473650 CCTTTTCTTC
* *
8473660 ATCGATTATTGCAGGTTCTTCTTC
1 ATCGATTATTGCAGGTTCTACTTA
*
8473684 ATCGATTATTGCACTGTTC-ACTTA
1 ATCGATTATTGCA-GGTTCTACTTA
8473708 ATCGATT
1 ATCGATT
8473715 TCCCTTTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.44
Consensus pattern (24 bp):
ATCGATTATTGCAGGTTCTACTTA
Found at i:8474605 original size:17 final size:18
Alignment explanation
Indices: 8474583--8474627 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
8474573 AATTCAGACA
8474583 GTTTTTTGATAGTCTGCT
1 GTTTTTTGATAGTCTGCT
8474601 GTTTTTTGATAGTCTGCT
1 GTTTTTTGATAGTCTGCT
8474619 GTTTTTTGA
1 GTTTTTTGA
8474628 AAGAGTTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.11, C:0.09, G:0.22, T:0.58
Consensus pattern (18 bp):
GTTTTTTGATAGTCTGCT
Found at i:8477355 original size:37 final size:37
Alignment explanation
Indices: 8477290--8477398 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
8477280 TACGTATGAT
* *
8477290 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8477325 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8477362 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8477399 TAAAGCTATC
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
35 10 0.14
36 3 0.04
37 56 0.81
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:8477426 original size:14 final size:14
Alignment explanation
Indices: 8477407--8477445 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
8477397 GCTAAAGCTA
*
8477407 TCACTTATCACTTT
1 TCACTTATCACTTG
*
8477421 TCACTTGTCACTTG
1 TCACTTATCACTTG
8477435 TCACTTGATCA
1 TCACTT-ATCA
8477446 GATAAGTGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 18 0.86
15 3 0.14
ACGTcount: A:0.21, C:0.28, G:0.08, T:0.44
Consensus pattern (14 bp):
TCACTTATCACTTG
Found at i:8477455 original size:59 final size:60
Alignment explanation
Indices: 8477362--8477479 Score: 186
Period size: 59 Copynumber: 2.0 Consensus size: 60
8477352 TAAGTGTAGC
* *
8477362 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAG-CTAAAGCTATCACTTATCACTTTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAA-CTATCACTTATCACTTTT
*
8477422 CACTTGTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAACTATCACTTATCACTTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAACTATCACTTATCACTTT
8477480 GTCTCTTGAT
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
59 41 0.76
60 13 0.24
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (60 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAACTATCACTTATCACTTTT
Found at i:8477469 original size:52 final size:51
Alignment explanation
Indices: 8477412--8477629 Score: 329
Period size: 52 Copynumber: 4.3 Consensus size: 51
8477402 AGCTATCACT
* *
8477412 TATCACTTTTCACTTGTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAAC
1 TATCACTTATCACTT-TCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
* *
8477464 TATCACTTATCAC--T---TTGTCTCTTGATCAGATAAGTATAGCCGAAGC
1 TATCACTTATCACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
8477510 TATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
1 TATCACTTATCACTTT-CACTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
8477562 TATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
1 TATCACTTATCACTTT-CACTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
*
8477614 TATCACCTATCACTTT
1 TATCACTTATCACTTT
8477630 GTCACTTGAT
Statistics
Matches: 153, Mismatches: 7, Indels: 12
0.89 0.04 0.07
Matches are distributed among these distances:
46 42 0.27
48 1 0.01
49 1 0.01
52 109 0.71
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.34
Consensus pattern (51 bp):
TATCACTTATCACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
Found at i:8477483 original size:105 final size:104
Alignment explanation
Indices: 8477362--8477637 Score: 384
Period size: 105 Copynumber: 2.6 Consensus size: 104
8477352 TAAGTGTAGC
**
8477362 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTTCACTT
8477427 GTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAACTAT
66 G-CACTTGTCACTTGATCAGATAAGTGTAGCCGAAACTAT
*
8477467 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCAC-TTT--C--
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTTCACTT
*
8477527 -CACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
66 GCACTTGTCACTTGATCAGATAAGTGTAGCCGAAACTAT
* *
8477565 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACCTATCACTTT
1 CACTTATCAC--T----TTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
8477630 GTCACTTG
60 -TCACTTG
8477638 ATCAGAAGTA
Statistics
Matches: 151, Mismatches: 7, Indels: 20
0.85 0.04 0.11
Matches are distributed among these distances:
98 47 0.31
100 1 0.01
102 1 0.01
104 45 0.30
105 55 0.36
106 1 0.01
108 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (104 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTTCACTT
GCACTTGTCACTTGATCAGATAAGTGTAGCCGAAACTAT
Found at i:8477583 original size:45 final size:45
Alignment explanation
Indices: 8477517--8477643 Score: 132
Period size: 52 Copynumber: 2.6 Consensus size: 45
8477507 AGCTATCACT
8477517 TATCACTT-TCCACTTGT-CACTTGATCAGATAAGTGTAGCCGAAGC
1 TATCACTTAT-CACTT-TCCACTTGATCAGATAAGTGTAGCCGAAGC
8477562 TATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
1 TATCACTTATCACTTT---C----CACTTGATCAGATAAGTGTAGCCGAAGC
* *
8477614 TATCACCTATCACTTTGTCACTTGATCAGA
1 TATCACTTATCACTTT-CCACTTGATCAGA
8477644 AGTACTCAAA
Statistics
Matches: 70, Mismatches: 3, Indels: 17
0.78 0.03 0.19
Matches are distributed among these distances:
44 1 0.01
45 13 0.19
46 13 0.19
52 43 0.61
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (45 bp):
TATCACTTATCACTTTCCACTTGATCAGATAAGTGTAGCCGAAGC
Found at i:8482037 original size:88 final size:91
Alignment explanation
Indices: 8481862--8482069 Score: 325
Period size: 88 Copynumber: 2.3 Consensus size: 91
8481852 TATTATGATT
* * * *
8481862 TTAT-TAAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAA
1 TTATATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAAATATATATCATTATAAAA
* *
8481926 TTATATTTAATATTAATTGTTTTAAA
66 TTATATTTAATAATAATTATTTTAAA
8481952 TTATATAAATTCATATAAGAAAATTTATTATCAAGAATTTTAT-AAAAT-TATAT-ATTATAAAA
1 TTATATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAAATATATATCATTATAAAA
8482014 TTATATTTAATAATAATTATTTTAAA
66 TTATATTTAATAATAATTATTTTAAA
*
8482040 TTATACAAATTCATATAAGAAAATTTATTA
1 TTATATAAATTCATATAAGAAAATTTATTA
8482070 GTAATAATTA
Statistics
Matches: 110, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
88 61 0.55
89 5 0.05
90 8 0.07
91 36 0.33
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (91 bp):
TTATATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAAATATATATCATTATAAAA
TTATATTTAATAATAATTATTTTAAA
Found at i:8482038 original size:15 final size:14
Alignment explanation
Indices: 8481990--8482037 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 14
8481980 TATCAAGAAT
8481990 TTTATAAAATTATA
1 TTTATAAAATTATA
8482004 TATTATAAAATTATA
1 T-TTATAAAATTATA
8482019 TTTAATAATAATTAT-
1 TTT-ATAA-AATTATA
8482034 TTTA
1 TTTA
8482038 AATTATACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
14 4 0.13
15 21 0.68
16 6 0.19
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTATAAAATTATA
Found at i:8482101 original size:47 final size:50
Alignment explanation
Indices: 8481978--8482135 Score: 128
Period size: 47 Copynumber: 3.1 Consensus size: 50
8481968 AAGAAAATTT
* * *
8481978 ATTATCAAGAATTTTATAAAATTATATATTATAAAATTATATTTAATAATA
1 ATTATTAAGAATTTTATAAAATCATATA-TAGAAAATTATATTTAATAATA
* * * * *
8482029 ATTATTTTA-AATTATACAAATTCATATA-AGAAAATT-TA-TTAGTAATA
1 ATTA-TTAAGAATTTTATAAAATCATATATAGAAAATTATATTTAATAATA
* *
8482076 ATTATTAAGAATTTTATTAAATCATATATTTTA-ATTAAAATATATTTAATAATA
1 ATTATTAAGAATTTTATAAAATCATATA---TAGA--AAATTATATTTAATAATA
8482130 ATTATT
1 ATTATT
8482136 TCAAATTATA
Statistics
Matches: 82, Mismatches: 15, Indels: 17
0.72 0.13 0.15
Matches are distributed among these distances:
46 3 0.04
47 27 0.33
48 2 0.02
49 7 0.09
50 1 0.01
51 20 0.24
52 6 0.07
53 2 0.02
54 14 0.17
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (50 bp):
ATTATTAAGAATTTTATAAAATCATATATAGAAAATTATATTTAATAATA
Found at i:8482207 original size:120 final size:120
Alignment explanation
Indices: 8482076--8482374 Score: 580
Period size: 120 Copynumber: 2.5 Consensus size: 120
8482066 ATTAGTAATA
8482076 ATTATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAA
1 ATTATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAA
*
8482141 TTATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTG
66 TTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTG
8482196 ATTATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAA
1 ATTATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAA
8482261 TTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTG
66 TTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTG
*
8482316 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 ATTATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT
8482375 GTTAAAATAT
Statistics
Matches: 177, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 177 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (120 bp):
ATTATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAA
TTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTG
Found at i:8482220 original size:61 final size:61
Alignment explanation
Indices: 8482155--8482345 Score: 194
Period size: 61 Copynumber: 3.2 Consensus size: 61
8482145 ATTTTATAGT
*
8482155 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
* * * * * * * * * * *
8482216 ATCATATATTTTAATTAAAATATATTTA-ATAATAATTATTTCA-AATT-A-TATTTTA-TAGT
1 ATCATATATTATGATTTAAGTAAATTCATATAAGAA-TA-TTGATTATTAAGAATTTTATTA-A
*
8482275 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
*
8482336 ATTATATATT
1 ATCATATATT
8482346 TTAATTAAAA
Statistics
Matches: 97, Mismatches: 25, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
58 5 0.05
59 32 0.33
60 14 0.14
61 41 0.42
62 5 0.05
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (61 bp):
ATCATATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
Found at i:8482354 original size:18 final size:17
Alignment explanation
Indices: 8482326--8482360 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8482316 ATTATTAAGA
*
8482326 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8482343 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8482361 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8483258 original size:24 final size:24
Alignment explanation
Indices: 8483209--8483260 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
8483199 AAGTTCAAGC
8483209 GAGCAATAACGGGAAGCTCATAAA
1 GAGCAATAACGGGAAGCTCATAAA
* *
8483233 GAGCCATATACGGGACGCTCAT-AA
1 GAGCAATA-ACGGGAAGCTCATAAA
8483257 GAGC
1 GAGC
8483261 TGTAGTGGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 13 0.52
25 12 0.48
ACGTcount: A:0.38, C:0.21, G:0.27, T:0.13
Consensus pattern (24 bp):
GAGCAATAACGGGAAGCTCATAAA
Found at i:8486132 original size:22 final size:22
Alignment explanation
Indices: 8486107--8486150 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8486097 TAGTTATATA
8486107 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
8486129 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
8486151 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Done.