Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 25 of 226
Found at i:8759484 original size:36 final size:32
Alignment explanation
Indices: 8759412--8759473 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
8759402 AAAAAACATT
**
8759412 TATATGCATGTATATGTATGAGTTATAAAATA
1 TATATGCATGTATATACATGAGTTATAAAATA
8759444 TATATGCATGTATATACATGTA-TTATAAAA
1 TATATGCATGTATATACATG-AGTTATAAAA
8759474 CGTATGTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 26 0.96
33 1 0.04
ACGTcount: A:0.42, C:0.05, G:0.13, T:0.40
Consensus pattern (32 bp):
TATATGCATGTATATACATGAGTTATAAAATA
Found at i:8759530 original size:20 final size:19
Alignment explanation
Indices: 8759503--8759549 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
8759493 ACATATATGT
8759503 ATATATATAAAGTATATAA
1 ATATATATAAAGTATATAA
* *
8759522 ATA-ATATATAAGTATGTAT
1 ATATATATA-AAGTATATAA
8759541 ATATATATA
1 ATATATATA
8759550 GAAATAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 5 0.21
19 14 0.58
20 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.40
Consensus pattern (19 bp):
ATATATATAAAGTATATAA
Found at i:8759611 original size:26 final size:27
Alignment explanation
Indices: 8759559--8759623 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 27
8759549 AGAAATAAAT
* *
8759559 TAAAAAAATATGTATGTAAGTATATATA
1 TAAACAAA-ATGTATGTAAGTACATATA
8759587 T-AACAAAATGTATGTATA-TACATATA
1 TAAACAAAATGTATGTA-AGTACATATA
8759613 TACAACAAAAT
1 TA-AACAAAAT
8759624 TTGGAATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 17 0.53
27 6 0.19
28 9 0.28
ACGTcount: A:0.54, C:0.06, G:0.08, T:0.32
Consensus pattern (27 bp):
TAAACAAAATGTATGTAAGTACATATA
Found at i:8761179 original size:20 final size:20
Alignment explanation
Indices: 8761154--8761195 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
8761144 GGCTCTATAT
8761154 AAATAACTTA-AAGTTAATTA
1 AAATAACTTAGAA-TTAATTA
8761174 AAATAACTTAGAATTAATTA
1 AAATAACTTAGAATTAATTA
8761194 AA
1 AA
8761196 TTTTTATGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (20 bp):
AAATAACTTAGAATTAATTA
Found at i:8761638 original size:21 final size:21
Alignment explanation
Indices: 8761614--8761694 Score: 58
Period size: 21 Copynumber: 3.9 Consensus size: 21
8761604 AACCCCAAGG
8761614 TTTAGGTTTTGAGATTTAAGA
1 TTTAGGTTTTGAGATTTAAGA
* * * * *
8761635 TTTAGGGTTCGAGGTTCAAGG
1 TTTAGGTTTTGAGATTTAAGA
* *
8761656 TTTAGG-TTTAAGGTTTAAGGA
1 TTTAGGTTTTGAGATTTAA-GA
*
8761677 TTTAGAGTTTAG-GATTTA
1 TTTAG-GTTTTGAGATTTA
8761695 TGTTTAAGGT
Statistics
Matches: 45, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
20 9 0.20
21 28 0.62
22 6 0.13
23 2 0.04
ACGTcount: A:0.26, C:0.02, G:0.28, T:0.43
Consensus pattern (21 bp):
TTTAGGTTTTGAGATTTAAGA
Found at i:8761692 original size:14 final size:14
Alignment explanation
Indices: 8761610--8761694 Score: 59
Period size: 14 Copynumber: 6.1 Consensus size: 14
8761600 ATTGAACCCC
*
8761610 AAGGTTTAGGTTTT
1 AAGGTTTAGGATTT
* * *
8761624 GAGATTTAAGATTT
1 AAGGTTTAGGATTT
* * *
8761638 AGGGTTCGAGG-TTC
1 AAGGTT-TAGGATTT
8761652 AAGGTTTAGG-TTT
1 AAGGTTTAGGATTT
8761665 AAGGTTTAAGGATTT
1 AAGGTTT-AGGATTT
8761680 -AGAGTTTAGGATTT
1 AAG-GTTTAGGATTT
8761694 A
1 A
8761695 TGTTTAAGGT
Statistics
Matches: 53, Mismatches: 13, Indels: 9
0.71 0.17 0.12
Matches are distributed among these distances:
13 12 0.23
14 32 0.60
15 9 0.17
ACGTcount: A:0.27, C:0.02, G:0.29, T:0.41
Consensus pattern (14 bp):
AAGGTTTAGGATTT
Found at i:8780037 original size:35 final size:37
Alignment explanation
Indices: 8779997--8780066 Score: 99
Period size: 35 Copynumber: 1.9 Consensus size: 37
8779987 AAATATAAAT
* * *
8779997 TTTAAATTCAAAGCTATTATTATAAT-TTT-TTTTGC
1 TTTAAAATAAAAGCTATTACTATAATATTTATTTTGC
8780032 TTTAAAATAAAAGCTATTACTATAATATTTATTTT
1 TTTAAAATAAAAGCTATTACTATAATATTTATTTT
8780067 TAGTAATCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
35 23 0.77
36 3 0.10
37 4 0.13
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.51
Consensus pattern (37 bp):
TTTAAAATAAAAGCTATTACTATAATATTTATTTTGC
Found at i:8781217 original size:110 final size:110
Alignment explanation
Indices: 8781097--8781309 Score: 417
Period size: 110 Copynumber: 1.9 Consensus size: 110
8781087 CACCATACCC
*
8781097 ATAGTGTACGTGGAGAAAATAAATATTTGACATATAAATATTATATATAAATAAAATATATTTAA
1 ATAGTATACGTGGAGAAAATAAATATTTGACATATAAATATTATATATAAATAAAATATATTTAA
8781162 CATAATGATAAATATCAATTTTATCAAAAATATATATTATATATA
66 CATAATGATAAATATCAATTTTATCAAAAATATATATTATATATA
8781207 ATAGTATACGTGGAGAAAATAAATATTTGACATATAAATATTATATATAAATAAAATATATTTAA
1 ATAGTATACGTGGAGAAAATAAATATTTGACATATAAATATTATATATAAATAAAATATATTTAA
8781272 CATAATGATAAATATCAATTTTATCAAAAATATATATT
66 CATAATGATAAATATCAATTTTATCAAAAATATATATT
8781310 TTTATTATAT
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 102 1.00
ACGTcount: A:0.51, C:0.05, G:0.07, T:0.37
Consensus pattern (110 bp):
ATAGTATACGTGGAGAAAATAAATATTTGACATATAAATATTATATATAAATAAAATATATTTAA
CATAATGATAAATATCAATTTTATCAAAAATATATATTATATATA
Found at i:8781377 original size:13 final size:13
Alignment explanation
Indices: 8781359--8781383 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8781349 TAAAAGAGTT
8781359 ATTAATTAAAAAG
1 ATTAATTAAAAAG
8781372 ATTAATTAAAAA
1 ATTAATTAAAAA
8781384 TAAAATAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAG
Found at i:8784030 original size:20 final size:20
Alignment explanation
Indices: 8784005--8784043 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8783995 ATTATGCGCA
*
8784005 AAATAAATAAAAAAAATATG
1 AAATAAACAAAAAAAATATG
*
8784025 AAATAAACAAATAAAATAT
1 AAATAAACAAAAAAAATAT
8784044 TCTCTAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (20 bp):
AAATAAACAAAAAAAATATG
Found at i:8787122 original size:21 final size:21
Alignment explanation
Indices: 8787083--8787122 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8787073 GGCTTCAAAG
* * *
8787083 ATTTTGGTTTTTTTTTTTTTA
1 ATTTTGCTTTTCTTCTTTTTA
8787104 ATTTTGCTTTTCTTCTTTT
1 ATTTTGCTTTTCTTCTTTT
8787123 GTGCTTTATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.07, C:0.07, G:0.07, T:0.78
Consensus pattern (21 bp):
ATTTTGCTTTTCTTCTTTTTA
Found at i:8794025 original size:17 final size:17
Alignment explanation
Indices: 8794005--8794041 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
8793995 AATTTTTGAA
*
8794005 TTAGTGAATTCTGTGAT
1 TTAGTGAATTCTATGAT
*
8794022 TTAGTGAATTTTATGAT
1 TTAGTGAATTCTATGAT
8794039 TTA
1 TTA
8794042 AAAAGAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.27, C:0.03, G:0.19, T:0.51
Consensus pattern (17 bp):
TTAGTGAATTCTATGAT
Found at i:8795318 original size:46 final size:46
Alignment explanation
Indices: 8795265--8795358 Score: 163
Period size: 46 Copynumber: 2.0 Consensus size: 46
8795255 CCATGGAAAA
8795265 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAA-GAAAGCCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGGAAA-CCATACTGAG
*
8795311 TTGTGAAAAGTAGGTATGGTGTTTTAGTGAAGGAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGGAAACCATACTGAG
8795357 TT
1 TT
8795359 ATAACATTGT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 42 0.91
47 4 0.09
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.31
Consensus pattern (46 bp):
TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGGAAACCATACTGAG
Found at i:8801102 original size:7 final size:7
Alignment explanation
Indices: 8801090--8801123 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
8801080 AATCTTAGTA
8801090 TAACATT
1 TAACATT
8801097 TAACATT
1 TAACATT
8801104 TAACATT
1 TAACATT
8801111 TAACATT
1 TAACATT
8801118 TAACAT
1 TAACAT
8801124 GTTATGTAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (7 bp):
TAACATT
Found at i:8803760 original size:16 final size:17
Alignment explanation
Indices: 8803739--8803771 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8803729 AATTTTAAAA
*
8803739 AATTCTATTAT-ATATC
1 AATTCTAATATGATATC
8803755 AATTCTAATATGATATC
1 AATTCTAATATGATATC
8803772 TTTAATAGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.39, C:0.12, G:0.03, T:0.45
Consensus pattern (17 bp):
AATTCTAATATGATATC
Found at i:8803873 original size:21 final size:21
Alignment explanation
Indices: 8803849--8803901 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
8803839 CATTGTTTCT
* *
8803849 AATCTCACTGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
8803870 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
8803891 AATCTCACCGC
1 AATCTCACCGC
8803902 CACCGCTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:8821022 original size:5 final size:5
Alignment explanation
Indices: 8821012--8821040 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
8821002 CCTGCCTGCC
8821012 CCACT CCACT CCACT CCACT CCACT CCAC
1 CCACT CCACT CCACT CCACT CCACT CCAC
8821041 CCCCTCCCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.62, G:0.00, T:0.17
Consensus pattern (5 bp):
CCACT
Found at i:8821982 original size:36 final size:35
Alignment explanation
Indices: 8821916--8821986 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 35
8821906 GCATCCCACA
* *
8821916 AAGACTCAATTACTGGATTCTTTAACTTCCCAAGT
1 AAGACTCAATTACCGGATTCTTTAAATTCCCAAGT
*
8821951 AAGACTCAACTTACCGGGTTCTTTAAATTCCCAAGT
1 AAGACTCAA-TTACCGGATTCTTTAAATTCCCAAGT
8821987 TTTTTTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 9 0.28
36 23 0.72
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.32
Consensus pattern (35 bp):
AAGACTCAATTACCGGATTCTTTAAATTCCCAAGT
Found at i:8834368 original size:5 final size:5
Alignment explanation
Indices: 8834358--8834386 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
8834348 CCTGCCTGCC
8834358 CCACT CCACT CCACT CCACT CCACT CCAC
1 CCACT CCACT CCACT CCACT CCACT CCAC
8834387 CCCCTCCCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.62, G:0.00, T:0.17
Consensus pattern (5 bp):
CCACT
Found at i:8835321 original size:36 final size:35
Alignment explanation
Indices: 8835255--8835325 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 35
8835245 GCATCCCACA
* *
8835255 AAGACTCAATTACTGGATTCTTTAACTTCCCAAGT
1 AAGACTCAATTACCGGATTCTTTAAATTCCCAAGT
*
8835290 AAGACTCAACTTACCGGGTTCTTTAAATTCCCAAGT
1 AAGACTCAA-TTACCGGATTCTTTAAATTCCCAAGT
8835326 TTTTTTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 9 0.28
36 23 0.72
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.32
Consensus pattern (35 bp):
AAGACTCAATTACCGGATTCTTTAAATTCCCAAGT
Found at i:8842507 original size:25 final size:25
Alignment explanation
Indices: 8842479--8842562 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 25
8842469 GCAGGTTAAT
* * *
8842479 GGGAAGCTCTTCCGAGCCATATAAC
1 GGGAAGCTCATACGAGCCAAATAAC
* * *
8842504 GGGAAGTTCATATGAGCCAAATATC
1 GGGAAGCTCATACGAGCCAAATAAC
* *
8842529 GGGAAGCTCATAAGAGCTAAATAAC
1 GGGAAGCTCATACGAGCCAAATAAC
*
8842554 TGGAAGCTC
1 GGGAAGCTC
8842563 GTGAGAGCCA
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (25 bp):
GGGAAGCTCATACGAGCCAAATAAC
Found at i:8844813 original size:24 final size:26
Alignment explanation
Indices: 8844785--8844839 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
8844775 CACCCGGAAT
**
8844785 AATATA-A-ATCCTCCTTAACACACC
1 AATATACATATCCTCCCAAACACACC
8844809 AATATATCATATCCTCCCAAACACACC
1 AATATA-CATATCCTCCCAAACACACC
8844836 AATA
1 AATA
8844840 AGGCATTAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 6 0.23
26 1 0.04
27 19 0.73
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.24
Consensus pattern (26 bp):
AATATACATATCCTCCCAAACACACC
Found at i:8845118 original size:24 final size:23
Alignment explanation
Indices: 8845087--8845133 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
8845077 TATTCACACG
8845087 TATTCTTA-CTTAATTTCAAATGT
1 TATTCTTACCTTAATTT-AAATGT
*
8845110 TATTACTTACCTTACTTTAAATGT
1 TATT-CTTACCTTAATTTAAATGT
8845134 CCCATGATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 10 0.48
25 7 0.33
ACGTcount: A:0.30, C:0.15, G:0.04, T:0.51
Consensus pattern (23 bp):
TATTCTTACCTTAATTTAAATGT
Found at i:8845425 original size:22 final size:24
Alignment explanation
Indices: 8845382--8845425 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
8845372 TAACTAAGCT
8845382 TACTTACTTTTCTAGCTTAATTCA
1 TACTTACTTTTCTAGCTTAATTCA
8845406 TACTT-CTTTTCTA-CTTAATT
1 TACTTACTTTTCTAGCTTAATT
8845426 TCTTGTCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 8 0.40
24 5 0.25
ACGTcount: A:0.23, C:0.20, G:0.02, T:0.55
Consensus pattern (24 bp):
TACTTACTTTTCTAGCTTAATTCA
Found at i:8845808 original size:22 final size:23
Alignment explanation
Indices: 8845783--8845831 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
8845773 TCTTCCCCTG
* *
8845783 TTTTCGTTTTGTTCTCTT-TTTC
1 TTTTCGTGTTCTTCTCTTGTTTC
* *
8845805 TTTTTGTGTTCTTCTTTTGTTTC
1 TTTTCGTGTTCTTCTCTTGTTTC
8845828 TTTT
1 TTTT
8845832 TCTTTTTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.00, C:0.14, G:0.10, T:0.76
Consensus pattern (23 bp):
TTTTCGTGTTCTTCTCTTGTTTC
Found at i:8845809 original size:17 final size:16
Alignment explanation
Indices: 8845783--8845838 Score: 57
Period size: 17 Copynumber: 3.6 Consensus size: 16
8845773 TCTTCCCCTG
*
8845783 TTTTCGTTTTGTTCTCT
1 TTTTCTTTTTGTT-TCT
8845800 TTTTCTTTTTGTGTTC-
1 TTTTCTTTTTGT-TTCT
8845816 --TTC-TTTTGTTTCT
1 TTTTCTTTTTGTTTCT
8845829 TTTTCTTTTT
1 TTTTCTTTTT
8845839 ATTTACTTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 11
0.73 0.02 0.24
Matches are distributed among these distances:
12 3 0.09
13 6 0.18
14 3 0.09
15 3 0.09
16 4 0.12
17 13 0.39
18 1 0.03
ACGTcount: A:0.00, C:0.14, G:0.09, T:0.77
Consensus pattern (16 bp):
TTTTCTTTTTGTTTCT
Found at i:8845830 original size:29 final size:30
Alignment explanation
Indices: 8845781--8845838 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
8845771 TTTCTTCCCC
8845781 TGTTTTCGTTTTGTTCTCTTTTTCTTTTTG
1 TGTTTTCGTTTTGTTCTCTTTTTCTTTTTG
8845811 TGTTCTTC-TTTTGTT-TCTTTTTCTTTTT
1 TGTT-TTCGTTTTGTTCTCTTTTTCTTTTT
8845839 ATTTACTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 13 0.48
30 11 0.41
31 3 0.11
ACGTcount: A:0.00, C:0.14, G:0.10, T:0.76
Consensus pattern (30 bp):
TGTTTTCGTTTTGTTCTCTTTTTCTTTTTG
Found at i:8852607 original size:25 final size:25
Alignment explanation
Indices: 8852579--8852773 Score: 118
Period size: 25 Copynumber: 7.9 Consensus size: 25
8852569 GAGCTCTTTC
* *
8852579 GAGCCATGTAATGGGAAGCTCATGT
1 GAGCCATATAATGGGAAGCTCATGA
* * *
8852604 GAGCCATATAACGGGAAGCTCTTGC
1 GAGCCATATAATGGGAAGCTCATGA
* *
8852629 GAGCCA-ATTATCAGGAAGCTCAT-A
1 GAGCCATATAAT-GGGAAGCTCATGA
* *
8852653 CGAGCCATA-AATGAGAAGCTCAAGA
1 -GAGCCATATAATGGGAAGCTCATGA
* * *
8852678 AAGCCAAAT-ATCGGGAAGCTCATAA
1 GAGCCATATAAT-GGGAAGCTCATGA
*
8852703 GAG-C-TGTAATCGGGAAGCTCATGTA
1 GAGCCATATAAT-GGGAAGCTCATG-A
* ** *
8852728 -AGCCA-ATATTAAGAAGCTCGTGA
1 GAGCCATATAATGGGAAGCTCATGA
* *
8852751 GAGCCATGTAATGGGATGCTCAT
1 GAGCCATATAATGGGAAGCTCAT
8852774 AAAAGCTAAA
Statistics
Matches: 125, Mismatches: 33, Indels: 24
0.69 0.18 0.13
Matches are distributed among these distances:
23 2 0.02
24 50 0.40
25 72 0.58
26 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (25 bp):
GAGCCATATAATGGGAAGCTCATGA
Found at i:8852731 original size:49 final size:50
Alignment explanation
Indices: 8852592--8852796 Score: 150
Period size: 49 Copynumber: 4.2 Consensus size: 50
8852582 CCATGTAATG
** * ** *
8852592 GGAAGCTCATGTGAGCCATATAA-CGGGAAGCTCTTGCGAGCCAATTATCA
1 GGAAGCTCATAAGAGCCATA-AATCGGGAAGCTCATGAAAGCCAAATATCA
* * * *
8852642 GGAAGCTCATACGAGCCATAAAT-GAGAAGCTCAAGAAAGCCAAATATCG
1 GGAAGCTCATAAGAGCCATAAATCGGGAAGCTCATGAAAGCCAAATATCA
** * *
8852691 GGAAGCTCATAAGAGCTGT-AATCGGGAAGCTCATGTAAGCC-AATATTA
1 GGAAGCTCATAAGAGCCATAAATCGGGAAGCTCATGAAAGCCAAATATCA
* * * * * * * *
8852739 AGAAGCTCGTGAGAGCCATGTAAT-GGGATGCTCATAAAAGCTAAATAACA
1 GGAAGCTCATAAGAGCCAT-AAATCGGGAAGCTCATGAAAGCCAAATATCA
*
8852789 GGACGCTC
1 GGAAGCTC
8852797 TTGCGAGTTG
Statistics
Matches: 120, Mismatches: 30, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
48 22 0.18
49 66 0.55
50 32 0.27
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.20
Consensus pattern (50 bp):
GGAAGCTCATAAGAGCCATAAATCGGGAAGCTCATGAAAGCCAAATATCA
Found at i:8857257 original size:13 final size:13
Alignment explanation
Indices: 8857239--8857263 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8857229 GGCATAATTT
8857239 TTAAAAATTAAAA
1 TTAAAAATTAAAA
8857252 TTAAAAATTAAA
1 TTAAAAATTAAA
8857264 TAAAAAAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TTAAAAATTAAAA
Found at i:8892939 original size:15 final size:15
Alignment explanation
Indices: 8892919--8892959 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
8892909 TTATAATTAT
8892919 TTAAATTCTATCGAA
1 TTAAATTCTATCGAA
*
8892934 TTAAATTCTATCTAA
1 TTAAATTCTATCGAA
8892949 TTAAATTCTAT
1 TTAAATTCTAT
8892960 TTTTTATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.46
Consensus pattern (15 bp):
TTAAATTCTATCGAA
Found at i:8898136 original size:21 final size:21
Alignment explanation
Indices: 8898104--8898151 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 21
8898094 TGTTTGACTT
8898104 GAAATTGTGTTTAAATATGATTTG
1 GAAA-TGT-TTTAAA-ATGATTTG
*
8898128 GAAATGTTTTGAAATGATTTG
1 GAAATGTTTTAAAATGATTTG
8898149 GAA
1 GAA
8898152 CTATAGGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 11 0.48
22 5 0.22
23 3 0.13
24 4 0.17
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (21 bp):
GAAATGTTTTAAAATGATTTG
Found at i:8899160 original size:14 final size:15
Alignment explanation
Indices: 8899141--8899173 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
8899131 GTTTCCATTA
8899141 TCTTTC-TTCTTCCC
1 TCTTTCTTTCTTCCC
8899155 TCTTTCTTTCTTCCC
1 TCTTTCTTTCTTCCC
8899170 -CTTT
1 TCTTT
8899174 AACTGTTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (15 bp):
TCTTTCTTTCTTCCC
Found at i:8899912 original size:186 final size:184
Alignment explanation
Indices: 8899487--8900461 Score: 1582
Period size: 181 Copynumber: 5.3 Consensus size: 184
8899477 CCAGATGTTG
* *
8899487 TGTTTTGAAGAAGAAAAATGGTGTTTGGCAAGAGAGAAAATGAGAGAAAAAAAATGGCAGCCGAC
1 TGTTTTGAAGAAGAAAAATGGTATTTGGCAAGAGAGAAAATGAGAG-AAAAAAATGGTAGCCGAC
* * *
8899552 AGTGGGGGAAAAAAACAATGATTTTAAGTTGAAAGTGTGGTGT-AGATTTACAAAAATTACACAA
65 ATTGGGGGAAAAAAACAATGATTTTAAGCTGAAAGTGTGGTGTGAG-TTTACAAAAATTACTCAA
*
8899616 AAGCATGATTATAATCATGGTAATGGAAATTCTTGTAGATGAAATGAGTCAACCATA
129 AAGCATGATTAT-ATCATGGTAATGGAAATTCTTGTAGATGAAATGAGCCAACCATA
* * *
8899673 TATTTTGAAGAAGAAAAATGGTGTTTGGCAAGAGAGAAAATGAGAGAAAAAAAATGGCAGCCGAC
1 TGTTTTGAAGAAGAAAAATGGTATTTGGCAAGAGAGAAAATGAGAG-AAAAAAATGGTAGCCGAC
* * * *
8899738 AGTGGAGGGAAAAAAACAATGATTTTAAGTTGAAAGTGTGGTGTGGGTTTACAAAAATTACACAA
65 ATTGG-GGGAAAAAAACAATGATTTTAAGCTGAAAGTGTGGTGTGAGTTTACAAAAATTACTCAA
*
8899803 AAGCATGATTATAATCATGGTAATGGAAATTCTTGTAGATGAAATGAGCCAAACATA
129 AAGCATGATTAT-ATCATGGTAATGGAAATTCTTGTAGATGAAATGAGCCAACCATA
*
8899860 TGTTTTGAAGAAAAAAAATGGTATTTGGCAAGAGAGAAAATGAGAGAAAAAAATGGTAGCCGACA
1 TGTTTTGAAGAAGAAAAATGGTATTTGGCAAGAGAGAAAATGAGAGAAAAAAATGGTAGCCGACA
*
8899925 TTGGTGGGAAAAAAATAATGATTTTAAGCTGAAAGTGTGGTGTGAGTTTACAAAAATTACTCAAA
66 TTGG-GGGAAAAAAACAATGATTTTAAGCTGAAAGTGTGGTGTGAGTTTACAAAAATTACTCAAA
8899990 AGCATGATTATATCATGGTAATGGAAATTCTTGTAGATGAAATGAGCCAACCATA
130 AGCATGATTATATCATGGTAATGGAAATTCTTGTAGATGAAATGAGCCAACCATA
* *
8900045 TGTTTTGAAGAAGAAAAATGGTATTTGGCACGAGAGAAAATGAGAGAAAAAAATGGTAGCCGGCA
1 TGTTTTGAAGAAGAAAAATGGTATTTGGCAAGAGAGAAAATGAGAGAAAAAAATGGTAGCCGACA
* * *
8900110 TTGGGGG--GAAAA-AATGATTTTAAGCTAAAAGTGTAGTGTGAGTTTACAAAAATTACTCAAAA
66 TTGGGGGAAAAAAACAATGATTTTAAGCTGAAAGTGTGGTGTGAGTTTACAAAAATTACTCAAAA
8900172 GCATGATTATATCATGGTAATGGAAATTCTTGTAGATGAAATGAGCCAACCATA
131 GCATGATTATATCATGGTAATGGAAATTCTTGTAGATGAAATGAGCCAACCATA
* *
8900226 TGTTTTGAAGGAGAAAAATGGTATTTGGAAAGAGAGAAAATGAGAGAAAAAAATGGTAGCCGACA
1 TGTTTTGAAGAAGAAAAATGGTATTTGGCAAGAGAGAAAATGAGAGAAAAAAATGGTAGCCGACA
*
8900291 TTGGGGG-GAAAAACAATGATTTTAAGCTGAAAGTGTGGTGTGAGTTTACAAAAATTACTCAAAA
66 TTGGGGGAAAAAAACAATGATTTTAAGCTGAAAGTGTGGTGTGAGTTTACAAAAATTACTCAAAA
* * *
8900355 GCATGATTATATCATGGTAATGGAAATTCTTGTCGATGAAATGAGTCAACCATG
131 GCATGATTATATCATGGTAATGGAAATTCTTGTAGATGAAATGAGCCAACCATA
* *
8900409 TGTTTTGAAGAAAAAAAAGTGGTGTTTGGCAAGAGAGAAAATGAGAGAAAAAA
1 TGTTTTGAAGAAGAAAAA-TGGTATTTGGCAAGAGAGAAAATGAGAGAAAAAA
8900462 TTTTGTTAAA
Statistics
Matches: 749, Mismatches: 35, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
181 170 0.23
182 8 0.01
183 115 0.15
184 35 0.05
185 109 0.15
186 157 0.21
187 154 0.21
188 1 0.00
ACGTcount: A:0.42, C:0.08, G:0.25, T:0.25
Consensus pattern (184 bp):
TGTTTTGAAGAAGAAAAATGGTATTTGGCAAGAGAGAAAATGAGAGAAAAAAATGGTAGCCGACA
TTGGGGGAAAAAAACAATGATTTTAAGCTGAAAGTGTGGTGTGAGTTTACAAAAATTACTCAAAA
GCATGATTATATCATGGTAATGGAAATTCTTGTAGATGAAATGAGCCAACCATA
Found at i:8905784 original size:2 final size:2
Alignment explanation
Indices: 8905777--8905802 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8905767 AATACCTAAA
8905777 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8905803 TTTTAGGTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8906978 original size:22 final size:23
Alignment explanation
Indices: 8906934--8906978 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
8906924 GTATTCAAAT
* *
8906934 CTTATTCTATCAATTCTCTCAAC
1 CTTATTCTATCAATTCACACAAC
*
8906957 CTTATTC-ATCTATTCACACAAC
1 CTTATTCTATCAATTCACACAAC
8906979 TATTTTATTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.29, C:0.31, G:0.00, T:0.40
Consensus pattern (23 bp):
CTTATTCTATCAATTCACACAAC
Found at i:8912836 original size:75 final size:73
Alignment explanation
Indices: 8912584--8912857 Score: 266
Period size: 75 Copynumber: 3.7 Consensus size: 73
8912574 AAAAAGGTTC
* * *
8912584 TCTATTGTATTTTACATCAATAATATACTTATTTACAATCTATGAAAAAAATTTAAAAAAATATT
1 TCTATTGTATTTTATATCAATAATATACTTATTTACAATCTACGAAAAAAA-TTAAAAAATTATT
8912649 GTAT-TGTAT
65 -TATATGTAT
* * * * *
8912658 TTTATTGTATTTTATATCAATAATATATATTTATTTACAATCTATGAAAGAAAATTAAAAATTTG
1 TCTATTGTATTTTATATCAAT-A-ATATACTTATTTACAATCTACGAAA-AAAATTAAAAAATTA
*
8912723 TTTGTATTGTAT
63 TTTATA-TGTAT
* * ** * * *
8912735 TCTATCGCATGCCT-TCTCAATAATATATTTATTTACAATCTACG-AAAAAATCAAAAAATTATT
1 TCTATTGTAT-TTTATATCAATAATATACTTATTTACAATCTACGAAAAAAATTAAAAAATTATT
8912798 TATATAGTAT
65 TATAT-GTAT
* * *
8912808 TCTACTGTATTTTATATCAATAACATATACTTATTTACAATTTACCAAAA
1 TCTATTGTATTTTATATCAAT-A-ATATACTTATTTACAATCTACGAAAA
8912858 TATGAATAAA
Statistics
Matches: 162, Mismatches: 27, Indels: 20
0.78 0.13 0.10
Matches are distributed among these distances:
72 2 0.01
73 34 0.21
74 22 0.14
75 43 0.27
76 38 0.23
77 22 0.14
78 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.43
Consensus pattern (73 bp):
TCTATTGTATTTTATATCAATAATATACTTATTTACAATCTACGAAAAAAATTAAAAAATTATTT
ATATGTAT
Found at i:8913025 original size:150 final size:151
Alignment explanation
Indices: 8912850--8913151 Score: 527
Period size: 151 Copynumber: 2.0 Consensus size: 151
8912840 ATTTACAATT
*
8912850 TACCAAAATATGAATAAATTG-TTTTTTTGTATGCTTATAAAAAAATGAATAAAA-GTTTAATTA
1 TACCAAAAAATGAATAAATTGTTTTTTTTGTATGCTTATAAAAAAATGAATAAAATGTTTAATTA
* *
8912913 AGTCTTCTCCTCAATGTTGCCTCCAAGTGTGGACATGTTGGCTTATTATGTTTTGGGTTCCTACA
66 AGTCTTCTCCTCAATGTTGCCTCCAAGTGTGGACATGTTGGCTT-TTATGTCTTGAGTTCCTACA
8912978 ATAACTGCATAACCTCGATTGG
130 ATAACTGCATAACCTCGATTGG
* *
8913000 TACCAAAAAATGAATAAATTGTTTTTTTTGTATGCTTATAAAAAATTGAATAAAATTTTTAATTA
1 TACCAAAAAATGAATAAATTGTTTTTTTTGTATGCTTATAAAAAAATGAATAAAATGTTTAATTA
8913065 AGTCTTCTCCTCAATGTTGCCTCCAAGTGTGGACATGTTGGCTTTTATGTCTTGAGTTCCTACAA
66 AGTCTTCTCCTCAATGTTGCCTCCAAGTGTGGACATGTTGGCTTTTATGTCTTGAGTTCCTACAA
*
8913130 TAATTGCATAACCTCGATTGG
131 TAACTGCATAACCTCGATTGG
8913151 T
1 T
8913152 CTATCTTCTC
Statistics
Matches: 144, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
150 20 0.14
151 72 0.50
152 52 0.36
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (151 bp):
TACCAAAAAATGAATAAATTGTTTTTTTTGTATGCTTATAAAAAAATGAATAAAATGTTTAATTA
AGTCTTCTCCTCAATGTTGCCTCCAAGTGTGGACATGTTGGCTTTTATGTCTTGAGTTCCTACAA
TAACTGCATAACCTCGATTGG
Found at i:8914781 original size:85 final size:85
Alignment explanation
Indices: 8914635--8914793 Score: 228
Period size: 85 Copynumber: 1.9 Consensus size: 85
8914625 TCACCATAGA
* * * ** * *
8914635 TAAGATAATGTAAGAGATCATGTCAGAATTCAATTTTGAATGATCTTGTGACATACTTGCAACAA
1 TAAGACAATGTAAGAGATCAGGTCAAAATTCAATTTCAAATGATCTTGAGACATACCTGCAACAA
8914700 CACAAGTATTTAGAAATAAG
66 CACAAGTATTTAGAAATAAG
* * *
8914720 TAAGACAATGTTAGAGATTAGGTCAAAATTTAATTTCAAATGATCTTGAGACATACCTGCAACAA
1 TAAGACAATGTAAGAGATCAGGTCAAAATTCAATTTCAAATGATCTTGAGACATACCTGCAACAA
8914785 CACAAGTAT
66 CACAAGTAT
8914794 GTGGAGCGTT
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
85 64 1.00
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.30
Consensus pattern (85 bp):
TAAGACAATGTAAGAGATCAGGTCAAAATTCAATTTCAAATGATCTTGAGACATACCTGCAACAA
CACAAGTATTTAGAAATAAG
Found at i:8915644 original size:49 final size:50
Alignment explanation
Indices: 8915517--8915645 Score: 136
Period size: 49 Copynumber: 2.6 Consensus size: 50
8915507 CTTGAACCTA
* * * * *
8915517 TGACCACATAATCATCGTCAACTGGG-GTCTCAAGTTATACTTGAACTCG
1 TGACCATATAACCATCGTCAACTGGGAGCCTCAAGTTATACTTCAACCCG
* * ** *
8915566 TGACCATATAACTATCTTCAACTAAGAGCCTTAA-TTATACTTCAACCCG
1 TGACCATATAACCATCGTCAACTGGGAGCCTCAAGTTATACTTCAACCCG
* *
8915615 TGACCGTATAACCATCGTGAACTGGGAGCCT
1 TGACCATATAACCATCGTCAACTGGGAGCCT
8915646 GAGTTGCAAT
Statistics
Matches: 63, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
49 58 0.92
50 5 0.08
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (50 bp):
TGACCATATAACCATCGTCAACTGGGAGCCTCAAGTTATACTTCAACCCG
Found at i:8916774 original size:34 final size:38
Alignment explanation
Indices: 8916706--8916774 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 38
8916696 TATAGGTAAG
* *
8916706 TTTTATTATTATTATTATTATTATTTGTTATTTTGCAC
1 TTTTATTATTAATATTATTATTATTGGTTATTTTGCAC
8916744 TTTT-TTATTAATATT-TTATT-TTGGTT-TTTTG
1 TTTTATTATTAATATTATTATTATTGGTTATTTTG
8916775 TGATATGGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 5 0.17
35 5 0.17
36 5 0.17
37 10 0.34
38 4 0.14
ACGTcount: A:0.20, C:0.03, G:0.07, T:0.70
Consensus pattern (38 bp):
TTTTATTATTAATATTATTATTATTGGTTATTTTGCAC
Found at i:8937705 original size:32 final size:33
Alignment explanation
Indices: 8937638--8937713 Score: 93
Period size: 32 Copynumber: 2.3 Consensus size: 33
8937628 ATAAAAAATT
* *
8937638 AATATTTTATAGTGTTTAGATGAATTTATGTAA
1 AATATTTTATAGTGTTTAGATAAATTTATCTAA
* *
8937671 AATACTTTATATTGTTT-GATAAATTT-TCTAAA
1 AATATTTTATAGTGTTTAGATAAATTTATCT-AA
8937703 AATATTTTATA
1 AATATTTTATA
8937714 AAAGTTGTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
31 2 0.05
32 20 0.54
33 15 0.41
ACGTcount: A:0.38, C:0.03, G:0.09, T:0.50
Consensus pattern (33 bp):
AATATTTTATAGTGTTTAGATAAATTTATCTAA
Found at i:8945335 original size:42 final size:42
Alignment explanation
Indices: 8945216--8945362 Score: 150
Period size: 42 Copynumber: 3.4 Consensus size: 42
8945206 TCATTGCCTT
* * *
8945216 CTTCTTCAGCCAAGCCAGTGGCAACTACTGCCTCTGTTCCAT
1 CTTCTCCAGCCAAGACAGTGGCAACTACTGCCTCTGTTCCAA
* * * *
8945258 CTTCCCCAGCCAAGTCCGTGGCAACTACGGCCTCTGTTCCAA
1 CTTCTCCAGCCAAGACAGTGGCAACTACTGCCTCTGTTCCAA
* * * * **
8945300 CTTCTCCAGCCAGGACAGTTGCAACTGCTGTCTCTGCACCAA
1 CTTCTCCAGCCAAGACAGTGGCAACTACTGCCTCTGTTCCAA
8945342 CTTCTTCTCCAGCCAAGACAG
1 ---CTTCTCCAGCCAAGACAG
8945363 CCCCAACTAC
Statistics
Matches: 85, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
42 68 0.80
45 17 0.20
ACGTcount: A:0.20, C:0.37, G:0.18, T:0.24
Consensus pattern (42 bp):
CTTCTCCAGCCAAGACAGTGGCAACTACTGCCTCTGTTCCAA
Found at i:8948687 original size:19 final size:18
Alignment explanation
Indices: 8948665--8948711 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 18
8948655 CATATATGTA
*
8948665 TTATTTTAATAAATGTTTT
1 TTATTTTAATAAAT-TATT
*
8948684 TTATTTTTAATCAATTATT
1 TTA-TTTTAATAAATTATT
8948703 TTATTTTAA
1 TTATTTTAA
8948712 AATATGATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 6 0.24
19 9 0.36
20 10 0.40
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (18 bp):
TTATTTTAATAAATTATT
Found at i:8948693 original size:20 final size:19
Alignment explanation
Indices: 8948668--8948709 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8948658 ATATGTATTA
*
8948668 TTTTAATAAATGTTTTTTAT
1 TTTTAATAAAT-TATTTTAT
*
8948688 TTTTAATCAATTATTTTAT
1 TTTTAATAAATTATTTTAT
8948707 TTT
1 TTT
8948710 AAAATATGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTAATAAATTATTTTAT
Found at i:8950755 original size:19 final size:21
Alignment explanation
Indices: 8950718--8950778 Score: 56
Period size: 20 Copynumber: 3.0 Consensus size: 21
8950708 TATATATAAG
* *
8950718 TTTTAGAATTTTTATAAA-TA
1 TTTTAGAATTTTAAAAAATTA
8950738 TTTT-GAATTTTAAAAAATTA
1 TTTTAGAATTTTAAAAAATTA
* * *
8950758 TTTTTGAAGTTT-GAAAATTA
1 TTTTAGAATTTTAAAAAATTA
8950778 T
1 T
8950779 CTTTGTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 11 0.31
20 18 0.51
21 6 0.17
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.52
Consensus pattern (21 bp):
TTTTAGAATTTTAAAAAATTA
Found at i:8950764 original size:21 final size:20
Alignment explanation
Indices: 8950738--8950783 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
8950728 TTTATAAATA
*
8950738 TTTTGAATTTTAAAAAATTAT
1 TTTTGAAGTTT-AAAAATTAT
*
8950759 TTTTGAAGTTTGAAAATTAT
1 TTTTGAAGTTTAAAAATTAT
*
8950779 CTTTG
1 TTTTG
8950784 TTTTTTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.35, C:0.02, G:0.11, T:0.52
Consensus pattern (20 bp):
TTTTGAAGTTTAAAAATTAT
Found at i:8954533 original size:7 final size:7
Alignment explanation
Indices: 8954517--8954556 Score: 71
Period size: 7 Copynumber: 5.7 Consensus size: 7
8954507 GTTTTTATGG
8954517 GTTGCTT
1 GTTGCTT
*
8954524 GTTGCCT
1 GTTGCTT
8954531 GTTGCTT
1 GTTGCTT
8954538 GTTGCTT
1 GTTGCTT
8954545 GTTGCTT
1 GTTGCTT
8954552 GTTGC
1 GTTGC
8954557 AGTAAACATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.00, C:0.17, G:0.30, T:0.53
Consensus pattern (7 bp):
GTTGCTT
Found at i:8955454 original size:20 final size:20
Alignment explanation
Indices: 8955426--8955464 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8955416 TGTCAATACT
* *
8955426 TTTCTTAAGGTATTGATATA
1 TTTCCTAAGGTATCGATATA
8955446 TTTCCTAAGGTATCGATAT
1 TTTCCTAAGGTATCGATAT
8955465 TTATGCTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.46
Consensus pattern (20 bp):
TTTCCTAAGGTATCGATATA
Found at i:8962033 original size:69 final size:68
Alignment explanation
Indices: 8961881--8962080 Score: 300
Period size: 65 Copynumber: 3.0 Consensus size: 68
8961871 CTTTTATGAG
* *
8961881 TTGTTTTATCTATTTATTTATTTGCTATTCTTTTACTTTTTAAAAATTTAAATTCGATATTATTT
1 TTGTTTTATCTATTTATTTATTTGTTATTCTTTTAC-TTTTAAAAATTTAAATTTGATATTATTT
*
8961946 ATAT
65 AAAT
8961950 TTGTTTTATC----TATTTATTTGTTATTCTTTTACTTTTAAAATATTTAAATTTGATATTATTT
1 TTGTTTTATCTATTTATTTATTTGTTATTCTTTTACTTTTAAAA-ATTTAAATTTGATATTATTT
8962011 AAAT
65 AAAT
* *
8962015 TTGTTTTATCTATTTATTTATTTGTCATTCTTTTACTTTTTAAACATTTAAATTTGATATTATTT
1 TTGTTTTATCTATTTATTTATTTGTTATTCTTTTAC-TTTTAAAAATTTAAATTTGATATTATTT
8962080 A
65 A
8962081 TACTTCCTTT
Statistics
Matches: 120, Mismatches: 5, Indels: 12
0.88 0.04 0.09
Matches are distributed among these distances:
64 8 0.07
65 53 0.44
69 52 0.43
70 7 0.06
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.61
Consensus pattern (68 bp):
TTGTTTTATCTATTTATTTATTTGTTATTCTTTTACTTTTAAAAATTTAAATTTGATATTATTTA
AAT
Found at i:8962115 original size:69 final size:66
Alignment explanation
Indices: 8961896--8962117 Score: 251
Period size: 69 Copynumber: 3.3 Consensus size: 66
8961886 TTATCTATTT
* *
8961896 ATTTATTTG-CTATTCTTTTACTTTTTAAAAATTTAAATTCGATATTATTTATATTTGTT-TTAT
1 ATTTATTTGTCTATTCTTTTACTTTTTAAAAATTTAAATTTGATATTATTTATATTTTTTATTAT
8961959 C
66 C
*
8961960 TATTTATTTGT-TATTCTTTTAC-TTTTAAAATATTTAAATTTGATATTATTTAAATTTGTTTTA
1 -ATTTATTTGTCTATTCTTTTACTTTTTAAAA-ATTTAAATTTGATATTATTTATA-TT-TTTTA
*
8962023 TCTATTT
62 T-TA-TC
*
8962030 ATTTATTTGTC-ATTCTTTTACTTTTTAAACATTTAAATTTGATATTATTTATACTTCCTTTTCA
1 ATTTATTTGTCTATTCTTTTACTTTTTAAAAATTTAAATTTGATATTATTTATA-TT--TTTT-A
8962094 TTATGC
62 TTAT-C
8962100 ATTTATTT-TCT-TTCTTTT
1 ATTTATTTGTCTATTCTTTT
8962118 TTGCCCTTAT
Statistics
Matches: 135, Mismatches: 9, Indels: 22
0.81 0.05 0.13
Matches are distributed among these distances:
64 8 0.06
65 41 0.30
66 2 0.01
67 3 0.02
68 1 0.01
69 56 0.41
70 22 0.16
71 2 0.01
ACGTcount: A:0.26, C:0.09, G:0.04, T:0.61
Consensus pattern (66 bp):
ATTTATTTGTCTATTCTTTTACTTTTTAAAAATTTAAATTTGATATTATTTATATTTTTTATTAT
C
Found at i:8963208 original size:22 final size:21
Alignment explanation
Indices: 8963182--8963270 Score: 79
Period size: 22 Copynumber: 3.9 Consensus size: 21
8963172 ATTTTCACAC
8963182 CAAAATTTGGACAGCATATATA
1 CAAAATTT-GACAGCATATATA
* *
8963204 CAAAATTTGGACTGCATTTATACA
1 CAAAATTT-GACAGCA--TATATA
8963228 TCAAAATTTGACAGCATATACATA
1 -CAAAATTTGACAGCATAT--ATA
* *
8963252 TATAATTTGACAGCATATA
1 CAAAATTTGACAGCATATA
8963271 CATAAATAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
21 1 0.02
22 18 0.32
23 16 0.29
24 13 0.23
25 8 0.14
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.31
Consensus pattern (21 bp):
CAAAATTTGACAGCATATATA
Found at i:8963259 original size:70 final size:70
Alignment explanation
Indices: 8963185--8963475 Score: 261
Period size: 70 Copynumber: 4.2 Consensus size: 70
8963175 TTCACACCAA
*
8963185 AATTTGGACAGCATATATACAAAATTTGGACTGCATTTATACATCAAAATTTGACAGCATATACA
1 AATTTGGACAGCATATACACAAAATTTGGACTGCATTTATACATCAAAATTTGACAGCATATACA
8963250 TATAT
66 TATAT
* * *
8963255 AATTT-GACAGCATATACATAAATAATTGGACTGCATTTGTACATCAAAATTTGACAGCATATAC
1 AATTTGGACAGCATATACACAAA-ATTTGGACTGCATTTATACATCAAAATTTGACAGCATATAC
8963319 ATATAT
65 ATATAT
* * *
8963325 AA-TTGGACTA-CATTTATACATCAAAATTT-GACAGCA--TATACAT-ATATAATTGGACTGCA
1 AATTTGGAC-AGCA--TATACA-CAAAATTTGGACTGCATTTATACATCA-A-AATTTGACAGCA
*
8963384 TTTGTACATCA-A-
60 --TATACAT-ATAT
* * *
8963396 AATTT-G--A-CATATACATATATAA-TTGGACTGCATTTGTACATCAAAATTTGACAGCATATG
1 AATTTGGACAGCATATACACA-A-AATTTGGACTGCATTTATACATCAAAATTTGACAGCATATA
8963456 CATATAT
64 CATATAT
*
8963463 AA-TTGGACTGCAT
1 AATTTGGACAGCAT
8963476 TTGTACATCA
Statistics
Matches: 178, Mismatches: 19, Indels: 48
0.73 0.08 0.20
Matches are distributed among these distances:
65 2 0.01
66 17 0.10
67 11 0.06
68 14 0.08
69 31 0.17
70 71 0.40
71 10 0.06
72 18 0.10
73 4 0.02
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (70 bp):
AATTTGGACAGCATATACACAAAATTTGGACTGCATTTATACATCAAAATTTGACAGCATATACA
TATAT
Found at i:8963308 original size:47 final size:47
Alignment explanation
Indices: 8963255--8963505 Score: 436
Period size: 47 Copynumber: 5.4 Consensus size: 47
8963245 ATACATATAT
*
8963255 AATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATCAA
1 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAA
* *
8963302 AATTTGACAGCATATACATATATAATTGGACTACATTTATACATCAA
1 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAA
8963349 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAA
1 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAA
8963396 AATTTG--A-CATATACATATATAATTGGACTGCATTTGTACATCAA
1 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAA
*
8963440 AATTTGACAGCATATGCATATATAATTGGACTGCATTTGTACATCAA
1 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAA
*
8963487 AATTTGATAGCATATACAT
1 AATTTGACAGCATATACAT
8963506 TCATTTACTC
Statistics
Matches: 193, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
44 43 0.22
45 1 0.01
46 1 0.01
47 148 0.77
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.34
Consensus pattern (47 bp):
AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAA
Found at i:8963460 original size:91 final size:92
Alignment explanation
Indices: 8963255--8963505 Score: 423
Period size: 91 Copynumber: 2.7 Consensus size: 92
8963245 ATACATATAT
*
8963255 AATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATCAAAATTTGACAGCATATACA
1 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAAAATTTG--AGCATATACA
8963320 TATATAATTGGACTACATTTATACATCAA
64 TATATAATTGGACTACATTTATACATCAA
8963349 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAAAATTTGA-CATATACATA
1 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAAAATTTGAGCATATACATA
* *
8963413 TATAATTGGACTGCATTTGTACATCAA
66 TATAATTGGACTACATTTATACATCAA
*
8963440 AATTTGACAGCATATGCATATATAATTGGACTGCATTTGTACATCAAAATTTGATAGCATATACA
1 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAAAATTTG--AGCATATACA
8963505 T
64 T
8963506 TCATTTACTC
Statistics
Matches: 150, Mismatches: 4, Indels: 6
0.94 0.03 0.04
Matches are distributed among these distances:
91 87 0.58
92 1 0.01
93 1 0.01
94 61 0.41
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.34
Consensus pattern (92 bp):
AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAAAATTTGAGCATATACATA
TATAATTGGACTACATTTATACATCAA
Found at i:8963777 original size:15 final size:16
Alignment explanation
Indices: 8963757--8963793 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
8963747 TATATGCATT
8963757 ACCATAT-AAATACTA
1 ACCATATAAAATACTA
8963772 ACCATATAAAATACTA
1 ACCATATAAAATACTA
8963788 ATCCAT
1 A-CCAT
8963794 GATTAAAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 7 0.35
16 9 0.45
17 4 0.20
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (16 bp):
ACCATATAAAATACTA
Found at i:8969726 original size:16 final size:17
Alignment explanation
Indices: 8969695--8969728 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
8969685 AAATGCATCC
*
8969695 TCTTTTCTGTTCTTTTT
1 TCTTTTCTGCTCTTTTT
8969712 TCTTTT-TGCTCTTTTT
1 TCTTTTCTGCTCTTTTT
8969728 T
1 T
8969729 TGTTTGTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.00, C:0.18, G:0.06, T:0.76
Consensus pattern (17 bp):
TCTTTTCTGCTCTTTTT
Found at i:8970030 original size:24 final size:24
Alignment explanation
Indices: 8969993--8970040 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
8969983 GACTATGGAC
*
8969993 ATTTTAAAATTTGGTTTTATTTTT
1 ATTTTAAAATTTGGGTTTATTTTT
8970017 ATTTATAAAA-TTGGGTTTATTTTT
1 ATTT-TAAAATTTGGGTTTATTTTT
8970041 GGTTTGCGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.62
Consensus pattern (24 bp):
ATTTTAAAATTTGGGTTTATTTTT
Found at i:8970474 original size:3 final size:3
Alignment explanation
Indices: 8970466--8970496 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
8970456 ATTTTTAATT
8970466 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
8970497 AAAACAACCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8978069 original size:7 final size:7
Alignment explanation
Indices: 8978059--8978085 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8978049 GAACTCGAAT
8978059 CTTAAAC
1 CTTAAAC
8978066 CTTAAAC
1 CTTAAAC
8978073 CTTAAAC
1 CTTAAAC
8978080 CTTAAA
1 CTTAAA
8978086 TCCCAAACCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.30
Consensus pattern (7 bp):
CTTAAAC
Found at i:8984775 original size:21 final size:22
Alignment explanation
Indices: 8984746--8984792 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
8984736 CAGAAGGAGT
*
8984746 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
8984768 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
8984789 GAGT
1 GAGT
8984793 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:8989870 original size:38 final size:38
Alignment explanation
Indices: 8989819--8989897 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
8989809 GTAAAAGTTG
8989819 AAGCGAATGGGAATTGTTGATAACATGAGCTGCTTTAA
1 AAGCGAATGGGAATTGTTGATAACATGAGCTGCTTTAA
8989857 AAGCGAATGGGAATTGTTGATAACATGAGCTGCTTTAA
1 AAGCGAATGGGAATTGTTGATAACATGAGCTGCTTTAA
8989895 AAG
1 AAG
8989898 GCCATAGATC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.28
Consensus pattern (38 bp):
AAGCGAATGGGAATTGTTGATAACATGAGCTGCTTTAA
Found at i:8993725 original size:23 final size:24
Alignment explanation
Indices: 8993681--8993725 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
8993671 AAAATTTTAT
* *
8993681 ATTGATTTTACAAAATATTTGAAA
1 ATTGATTTTACAAAAAAGTTGAAA
*
8993705 ATTG-TTTTATAAAAAAGTTGA
1 ATTGATTTTACAAAAAAGTTGA
8993726 TTTCGCAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 14 0.78
24 4 0.22
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.42
Consensus pattern (24 bp):
ATTGATTTTACAAAAAAGTTGAAA
Found at i:8995147 original size:57 final size:57
Alignment explanation
Indices: 8995059--8995179 Score: 242
Period size: 57 Copynumber: 2.1 Consensus size: 57
8995049 CTTGAAAAGT
8995059 AATCAAAATGGGACTGAGAAGGGTTAAGCACTAAGACTTAATTTTGGTAAGGCCATA
1 AATCAAAATGGGACTGAGAAGGGTTAAGCACTAAGACTTAATTTTGGTAAGGCCATA
8995116 AATCAAAATGGGACTGAGAAGGGTTAAGCACTAAGACTTAATTTTGGTAAGGCCATA
1 AATCAAAATGGGACTGAGAAGGGTTAAGCACTAAGACTTAATTTTGGTAAGGCCATA
8995173 AATCAAA
1 AATCAAA
8995180 CAAATAAGCA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 64 1.00
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.24
Consensus pattern (57 bp):
AATCAAAATGGGACTGAGAAGGGTTAAGCACTAAGACTTAATTTTGGTAAGGCCATA
Found at i:8996616 original size:25 final size:23
Alignment explanation
Indices: 8996571--8996617 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
8996561 AACAAGATAA
* *
8996571 TATAATATAAAAATTCGCTCCAT
1 TATAATATAAAAACTCACTCCAT
8996594 TATAATAATAAAAACTCAACTCCA
1 TATAAT-ATAAAAACTC-ACTCCA
8996618 CCAAATTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 9 0.45
25 5 0.25
ACGTcount: A:0.49, C:0.19, G:0.02, T:0.30
Consensus pattern (23 bp):
TATAATATAAAAACTCACTCCAT
Found at i:9000642 original size:24 final size:24
Alignment explanation
Indices: 9000606--9000653 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
9000596 ATAGTAATTT
**
9000606 TTTGAATTTTTTTAT-ACTTTTTAA
1 TTTGAATAGTTTTATCA-TTTTTAA
9000630 TTTGAATAGTTTTATCATTTTTAA
1 TTTGAATAGTTTTATCATTTTTAA
9000654 ATTATTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.62
Consensus pattern (24 bp):
TTTGAATAGTTTTATCATTTTTAA
Found at i:9009657 original size:20 final size:20
Alignment explanation
Indices: 9009632--9009670 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
9009622 TTTGAAGATT
9009632 ATTGATAAATATTTTATATA
1 ATTGATAAATATTTTATATA
9009652 ATTGATAAATATTTTATAT
1 ATTGATAAATATTTTATAT
9009671 TTAAGATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
ATTGATAAATATTTTATATA
Found at i:9010689 original size:18 final size:18
Alignment explanation
Indices: 9010666--9010704 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
9010656 TCAAACAAAT
9010666 AATATT-AATTGTTTAAAA
1 AATATTGAA-TGTTTAAAA
*
9010684 AATATTGAATGTTTACAA
1 AATATTGAATGTTTAAAA
9010702 AAT
1 AAT
9010705 TAAATTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.41
Consensus pattern (18 bp):
AATATTGAATGTTTAAAA
Found at i:9012913 original size:61 final size:60
Alignment explanation
Indices: 9012848--9013019 Score: 192
Period size: 61 Copynumber: 2.9 Consensus size: 60
9012838 TTGTTATTAA
* * *
9012848 ATTTTAATAAAATTATTATTAAATATAATTTAATAAAAATAATAATAAATAACTTAATCAT
1 ATTTTAATAAAATTATTATTAAATATAATTTAATAAAAAT-ATAATATATAACTTAATAAC
* * *
9012909 ATTTTAA-AACAATTATTATTAAATACAATTAAAT-AAAAT-T-ATATATAATTTAATAAC
1 ATTTTAATAA-AATTATTATTAAATATAATTTAATAAAAATATAATATATAACTTAATAAC
*
9012966 ATTCTTAATATAATTATTATTAAAATATGAA-TTAATAAAAATCATAATATATAA
1 ATT-TTAATAAAATTATTATT-AAATAT-AATTTAATAAAAAT-ATAATATATAA
9013020 TGTTATAAAA
Statistics
Matches: 93, Mismatches: 9, Indels: 16
0.79 0.08 0.14
Matches are distributed among these distances:
57 16 0.17
58 15 0.16
59 10 0.11
60 14 0.15
61 29 0.31
62 1 0.01
63 8 0.09
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.41
Consensus pattern (60 bp):
ATTTTAATAAAATTATTATTAAATATAATTTAATAAAAATATAATATATAACTTAATAAC
Found at i:9016464 original size:33 final size:33
Alignment explanation
Indices: 9016427--9016517 Score: 94
Period size: 33 Copynumber: 2.8 Consensus size: 33
9016417 TTTTAAATGT
*
9016427 AAGACCATAGCTGGGCTATGGCATTTT-AATGAA
1 AAGACCATAGCTGGGCTATGGCATTTTGAACG-A
* *** * *
9016460 AAGACCATAACTGAATTATGACATTTTGAACGT
1 AAGACCATAGCTGGGCTATGGCATTTTGAACGA
*
9016493 AAGACCATGGCTGGGCTATGGCATT
1 AAGACCATAGCTGGGCTATGGCATT
9016518 CTGATGATAA
Statistics
Matches: 44, Mismatches: 13, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
33 41 0.93
34 3 0.07
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.27
Consensus pattern (33 bp):
AAGACCATAGCTGGGCTATGGCATTTTGAACGA
Found at i:9016561 original size:66 final size:66
Alignment explanation
Indices: 9016421--9016581 Score: 171
Period size: 66 Copynumber: 2.4 Consensus size: 66
9016411 GGAAATTTTT
* * * *
9016421 AAATGTAAGACCATAGCTGGGCTATGGCATTTTAATGAAAAGACCATAACTGAATTATGACATTT
1 AAATGTAAGACCATGGCTGGGCTATGGCATTCTAATGAAAAGACCATAACTGAATTATGACACTA
*
9016486 T
66 C
* * * * * * ** *
9016487 GAACGTAAGACCATGGCTGGGCTATGGCATTCTGATGATAATACCATAATTGGGTTATGGCACTA
1 AAATGTAAGACCATGGCTGGGCTATGGCATTCTAATGAAAAGACCATAACTGAATTATGACACTA
9016552 C
66 C
*
9016553 AAATGTAAGACCATGG-TAGGGCCATGGCA
1 AAATGTAAGACCATGGCT-GGGCTATGGCA
9016582 ATGCATGTGT
Statistics
Matches: 77, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
65 1 0.01
66 76 0.99
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.27
Consensus pattern (66 bp):
AAATGTAAGACCATGGCTGGGCTATGGCATTCTAATGAAAAGACCATAACTGAATTATGACACTA
C
Found at i:9018177 original size:12 final size:12
Alignment explanation
Indices: 9018160--9018188 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
9018150 GTCCAAAGTG
9018160 CCTCCGGTAGCA
1 CCTCCGGTAGCA
9018172 CCTCCGGTAGCA
1 CCTCCGGTAGCA
9018184 CCTCC
1 CCTCC
9018189 ACCTCCTCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.14, C:0.48, G:0.21, T:0.17
Consensus pattern (12 bp):
CCTCCGGTAGCA
Found at i:9022994 original size:42 final size:42
Alignment explanation
Indices: 9022947--9023108 Score: 238
Period size: 42 Copynumber: 3.9 Consensus size: 42
9022937 CAAACGAAAA
*
9022947 CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
*
9022989 CGCCGCTAAAGAACATGATT-TTTAGCGGTGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATG-TTCTTTAGCGGCGTTTTTTTCTAAG
* *
9023031 CGCCTCTAAAGAACATGTTCTTTAGCGGC-ATTTTTTCTTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTC-TAAG
* *
9023073 CGCCGCTAAAGAACATGTTCGTTAGCAGCGTTTTTT
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTT
9023109 ACAAAAACGC
Statistics
Matches: 107, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
41 9 0.08
42 91 0.85
43 7 0.07
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.36
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
Found at i:9028959 original size:25 final size:25
Alignment explanation
Indices: 9028896--9029034 Score: 147
Period size: 25 Copynumber: 5.5 Consensus size: 25
9028886 ATTCTTTAAG
* **
9028896 AATTATGTAACTGCTGTATTATGAA
1 AATTATGTAAGTTATGTATTATGAA
*
9028921 GAATTATGTTAGTTATGTATTATGAA
1 -AATTATGTAAGTTATGTATTATGAA
*
9028947 AATTATGTAAGTTGTGTACTGTAT--A
1 AATTATGTAAGTTATGTA-T-TATGAA
* * *
9028972 AGTTATGTAAGTTTTATATTATGAA
1 AATTATGTAAGTTATGTATTATGAA
**
9028997 AATTAAATAAGTTATGTATTATGAA
1 AATTATGTAAGTTATGTATTATGAA
9029022 AATTATGTAAGTT
1 AATTATGTAAGTT
9029035 CAATATTATG
Statistics
Matches: 93, Mismatches: 16, Indels: 9
0.79 0.14 0.08
Matches are distributed among these distances:
23 3 0.03
24 1 0.01
25 64 0.69
26 22 0.24
27 3 0.03
ACGTcount: A:0.37, C:0.02, G:0.17, T:0.44
Consensus pattern (25 bp):
AATTATGTAAGTTATGTATTATGAA
Found at i:9028992 original size:50 final size:49
Alignment explanation
Indices: 9028896--9029055 Score: 144
Period size: 50 Copynumber: 3.2 Consensus size: 49
9028886 ATTCTTTAAG
* ** * *
9028896 AATTATGTAACTGCTGTATTATGAAGAATTATGTTAGTTATGTATTATGAA
1 AATTATGTAAGTTATGTATTAT-AA-AATTATGTAAGTTATATATTATGAA
* * *
9028947 AATTATGTAAGTTGTGTACTGTAT-AAGTTATGTAAGTTTTATATTATGAA
1 AATTATGTAAGTTATGTA-T-TATAAAATTATGTAAGTTATATATTATGAA
** *
9028997 AATTAAATAAGTTATGTATTATGAAAATTATGTAAGTTCA-ATATTATGTA
1 AATTATGTAAGTTATGTATTAT-AAAATTATGTAAGTT-ATATATTATGAA
*
9029047 AGTTATGTA
1 AATTATGTA
9029056 TTACGAAAAT
Statistics
Matches: 88, Mismatches: 16, Indels: 11
0.77 0.14 0.10
Matches are distributed among these distances:
48 3 0.03
49 1 0.01
50 64 0.73
51 16 0.18
52 1 0.01
53 3 0.03
ACGTcount: A:0.38, C:0.03, G:0.16, T:0.44
Consensus pattern (49 bp):
AATTATGTAAGTTATGTATTATAAAATTATGTAAGTTATATATTATGAA
Found at i:9029041 original size:25 final size:24
Alignment explanation
Indices: 9028911--9029055 Score: 116
Period size: 25 Copynumber: 5.8 Consensus size: 24
9028901 TGTAACTGCT
*
9028911 GTATTATGAAGAATTATGTTAGTTA
1 GTATTATGAA-AATTATGTAAGTTA
9028936 TGTATTATGAAAATTATGTAAGTT-
1 -GTATTATGAAAATTATGTAAGTTA
* *
9028960 GT-GTACTGTATAAGTTATGTAAGTTTTA
1 GTATTA-TG-A-AAATTATGTAAG--TTA
**
9028988 -TATTATGAAAATTAAATAAGTTA
1 GTATTATGAAAATTATGTAAGTTA
9029011 TGTATTATGAAAATTATGTAAGTTCA
1 -GTATTATGAAAATTATGTAAGTT-A
* * *
9029037 ATATTATGTAAGTTATGTA
1 GTATTATGAAAATTATGTA
9029056 TTACGAAAAT
Statistics
Matches: 97, Mismatches: 12, Indels: 21
0.75 0.09 0.16
Matches are distributed among these distances:
22 2 0.02
23 7 0.07
24 1 0.01
25 68 0.70
26 12 0.12
27 5 0.05
28 2 0.02
ACGTcount: A:0.38, C:0.01, G:0.17, T:0.44
Consensus pattern (24 bp):
GTATTATGAAAATTATGTAAGTTA
Found at i:9029178 original size:25 final size:25
Alignment explanation
Indices: 9029141--9029201 Score: 104
Period size: 25 Copynumber: 2.4 Consensus size: 25
9029131 GTTATGTAGG
* *
9029141 TTATGAAAATTATGTAAGTTCAATA
1 TTATGTAAGTTATGTAAGTTCAATA
9029166 TTATGTAAGTTATGTAAGTTCAATA
1 TTATGTAAGTTATGTAAGTTCAATA
9029191 TTATGTAAGTT
1 TTATGTAAGTT
9029202 CAATATTATG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (25 bp):
TTATGTAAGTTATGTAAGTTCAATA
Found at i:9029190 original size:151 final size:151
Alignment explanation
Indices: 9028990--9029499 Score: 704
Period size: 151 Copynumber: 3.3 Consensus size: 151
9028980 AAGTTTTATA
** * * *
9028990 TTATGAAAATTAAATAAGTT-ATGTATTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATG
1 TTATGAAAATTATGTAAGTTCA-ATATTATGTAAGTTATGTAAGTTCAATATTATGTAAGTTATG
9029054 TATTACGAAAATTATGTAAGTTCAAAAATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTG
65 TATTACGAAAATTATGTAAGTTCAAAAATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTG
*
9029119 TGTATTGTATAGGTTATGTAGG
130 TGTATTGTATAAGTTATGTAGG
*
9029141 TTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAAGTTCAATATTATGTAAGTTCA-A
1 TTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAAGTTCAATATTATGTAAGTT-ATG
* * *
9029205 TATTATGTAAGTTATGT-A-TTACGAAAATTATGTAAGTTCAAAAATTATGTAAGCTATGTATTA
65 TATTACGAAAATTATGTAAGTT-C---AA--A---AA-TT-----A-T--GTAAGCTATGTATTA
9029268 TGAAATTTAAGTAAGCTGTGTATTGTATAAGTTATGTAGG
112 TGAAATTTAAGTAAGCTGTGTATTGTATAAGTTATGTAGG
9029308 TTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAAGTTCAATATTATGTAAGTTATGT
1 TTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAAGTTCAATATTATGTAAGTTATGT
* *
9029373 ATTACGAAAATTATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGT
66 ATTACGAAAATTATGTAAGTTCAAAAATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGT
9029438 GTATTGTATAAGTTATGTAGG
131 GTATTGTATAAGTTATGTAGG
9029459 TTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTA
1 TTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTA
9029500 CTATGAAAAT
Statistics
Matches: 320, Mismatches: 16, Indels: 46
0.84 0.04 0.12
Matches are distributed among these distances:
149 2 0.01
150 2 0.01
151 164 0.51
152 2 0.01
153 3 0.01
154 1 0.00
155 1 0.00
158 2 0.01
159 4 0.01
160 1 0.00
163 1 0.00
164 1 0.00
165 2 0.01
166 1 0.00
167 129 0.40
168 2 0.01
169 2 0.01
ACGTcount: A:0.38, C:0.04, G:0.17, T:0.41
Consensus pattern (151 bp):
TTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAAGTTCAATATTATGTAAGTTATGT
ATTACGAAAATTATGTAAGTTCAAAAATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGT
GTATTGTATAAGTTATGTAGG
Found at i:9029213 original size:167 final size:165
Alignment explanation
Indices: 9028922--9029561 Score: 860
Period size: 167 Copynumber: 4.0 Consensus size: 165
9028912 TATTATGAAG
* * * * * * *
9028922 AATTATGTTAGTTATGTATTATGAAAATTATGTAAGTTGTGTACTGTATAAGTTATGTAAGTT-T
1 AATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAAGTTATGTAGGTTAT
* * * * *
9028986 -TATATTATGAAAATTAAATAAGTTATGT-A-TTATG--A---AAATTATGTAAGTTCAATATTA
66 GAAAATTATGTAAGTTCAAT-A-TTATGTAAGTTATGTAAGTTAAATTATGTAAGTTCAATATTA
9029043 TGTAAGTTATGTATTACGAAAATTATGTAAGTTCAAA
129 TGTAAGTTATGTATTACGAAAATTATGTAAGTTCAAA
*
9029080 AATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAGGTTATGTAGGTTAT
1 AATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAAGTTATGTAGGTTAT
9029145 GAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAAGTTCAATATTATGTAAGTTCAATATTA
66 GAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAAGTT-AA-ATTATGTAAGTTCAATATTA
9029210 TGTAAGTTATGTATTACGAAAATTATGTAAGTTCAAA
129 TGTAAGTTATGTATTACGAAAATTATGTAAGTTCAAA
9029247 AATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAAGTTATGTAGGTTAT
1 AATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAAGTTATGTAGGTTAT
9029312 GAAAATTATGTAAGTTC---A--A--T-A-TTATGTAAG-----TTATGTAAGTTCAATATTATG
66 GAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAAGTTAAATTATGTAAGTTCAATATTATG
*
9029363 TAAGTTATGTATTACGAAAATTATGTAAGTTCCAA
131 TAAGTTATGTATTACGAAAATTATGTAAGTTCAAA
*
9029398 TATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAAGTTATGTAGGTTAT
1 AATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAAGTTATGTAGGTTAT
*
9029463 GAAAATTATGTAAGTTCAATATTATGTAAGTTATGTACTA-TGAAAATTATGTAAGTTCAATATT
66 GAAAATTATGTAAGTTCAATATTATGTAAGTTATGTA--AGT-TAAATTATGTAAGTTCAATATT
* * **
9029527 ATGTAAGCTGTGTATTATAAACAATTATGTAAGTT
128 ATGTAAGTTATGTATTACGAA-AATTATGTAAGTT
9029562 GTGTATTGAA
Statistics
Matches: 433, Mismatches: 20, Indels: 48
0.86 0.04 0.10
Matches are distributed among these distances:
151 136 0.31
154 1 0.00
156 1 0.00
158 71 0.16
159 5 0.01
160 27 0.06
162 3 0.01
164 1 0.00
166 2 0.00
167 173 0.40
168 13 0.03
ACGTcount: A:0.38, C:0.04, G:0.17, T:0.42
Consensus pattern (165 bp):
AATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAAGTTATGTAGGTTAT
GAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAAGTTAAATTATGTAAGTTCAATATTATG
TAAGTTATGTATTACGAAAATTATGTAAGTTCAAA
Found at i:9029225 original size:16 final size:16
Alignment explanation
Indices: 9029149--9029217 Score: 89
Period size: 16 Copynumber: 4.8 Consensus size: 16
9029139 GGTTATGAAA
9029149 ATTATGTAAGTTCAAT
1 ATTATGTAAGTTCAAT
9029165 ATTATGTAAG------
1 ATTATGTAAGTTCAAT
9029175 -TTATGTAAGTTCAAT
1 ATTATGTAAGTTCAAT
9029190 ATTATGTAAGTTCAAT
1 ATTATGTAAGTTCAAT
9029206 ATTATGTAAGTT
1 ATTATGTAAGTT
9029218 ATGTATTACG
Statistics
Matches: 46, Mismatches: 0, Indels: 14
0.77 0.00 0.23
Matches are distributed among these distances:
9 9 0.20
16 37 0.80
ACGTcount: A:0.36, C:0.04, G:0.14, T:0.45
Consensus pattern (16 bp):
ATTATGTAAGTTCAAT
Found at i:9029345 original size:25 final size:25
Alignment explanation
Indices: 9029308--9029373 Score: 114
Period size: 25 Copynumber: 2.6 Consensus size: 25
9029298 GTTATGTAGG
* *
9029308 TTATGAAAATTATGTAAGTTCAATA
1 TTATGTAAGTTATGTAAGTTCAATA
9029333 TTATGTAAGTTATGTAAGTTCAATA
1 TTATGTAAGTTATGTAAGTTCAATA
9029358 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
9029374 TTACGAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (25 bp):
TTATGTAAGTTATGTAAGTTCAATA
Found at i:9029376 original size:16 final size:16
Alignment explanation
Indices: 9029316--9029368 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 16
9029306 GGTTATGAAA
9029316 ATTATGTAAGTTCAAT
1 ATTATGTAAGTTCAAT
9029332 ATTATGTAAG------
1 ATTATGTAAGTTCAAT
9029342 -TTATGTAAGTTCAAT
1 ATTATGTAAGTTCAAT
9029357 ATTATGTAAGTT
1 ATTATGTAAGTT
9029369 ATGTATTACG
Statistics
Matches: 30, Mismatches: 0, Indels: 14
0.68 0.00 0.32
Matches are distributed among these distances:
9 9 0.30
16 21 0.70
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (16 bp):
ATTATGTAAGTTCAAT
Found at i:9029385 original size:25 final size:25
Alignment explanation
Indices: 9029308--9029393 Score: 104
Period size: 25 Copynumber: 3.4 Consensus size: 25
9029298 GTTATGTAGG
* * *
9029308 TTATGAAAATTATGTAAGTTCAATA
1 TTATGTAAGTTATGTAAGTTCAAAA
*
9029333 TTATGTAAGTTATGTAAGTTCAATA
1 TTATGTAAGTTATGTAAGTTCAAAA
9029358 TTATGTAAGTTATGT-A-TTACGAAAA
1 TTATGTAAGTTATGTAAGTT-C-AAAA
9029383 TTATGTAAGTT
1 TTATGTAAGTT
9029394 CCAATATTAT
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
23 2 0.04
24 2 0.04
25 52 0.93
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.43
Consensus pattern (25 bp):
TTATGTAAGTTATGTAAGTTCAAAA
Found at i:9029554 original size:151 final size:148
Alignment explanation
Indices: 9029003--9029568 Score: 516
Period size: 151 Copynumber: 3.8 Consensus size: 148
9028993 TGAAAATTAA
*
9029003 ATAAGTTATGTATTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTATTACGAAAATTA
1 ATAAGTTATGTATTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTATTATGAAAATTA
* * * * *
9029068 TGTAAGTTCAAAAATTATGTAAGCTATGTATT-ATGAAATTTAAGTAAGCTGTGTATTGT-ATAG
66 TGTAAGTTCAAAAATTATGTAAGCTATGTATTCA--AAAATTATGTAAGCTATGTATTATGA-AA
* * * * * * *
9029131 GTTATGTAGGTTATGAAAATTAT
128 TTTAAGTAAGCTGTG--TATTGT
* * * * * * *
9029154 GTAAGTTCA-ATATTATGTAAGTTATGTAAGTTCAATATTATGTAAGTTCA-ATATTATGTAAGT
1 ATAAGTT-ATGTATTATGAAAATTATGTAAGTTCAATATTATGTAAGTT-ATGTATTATGAAAAT
*
9029217 TATGT-A-TTACGAAAATTATGT-A---A-G--TTCAAAAATTATGTAAGCTATGTATTATGAAA
64 TATGTAAGTT-CAAAAATTATGTAAGCTATGTATTCAAAAATTATGTAAGCTATGTATTATGAAA
9029273 TTTAAGTAAGCTGTGTATTGT
128 TTTAAGTAAGCTGTGTATTGT
* * *
9029294 ATAAGTTATGTAGGTTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAAGT-TCAATA
1 ATAAGTTATGTA--TTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGT-ATTATGAAAA
*** * * ** * *
9029358 TTATGTAAGTT-ATGTATTACGAAAATTATGTAAGTTCCAATATTATGTAAGCTATGTATTATGA
63 TTATGTAAGTTCAAAAATTATGTAAGCTATGT-A-TTCAAAAATTATGTAAGCTATGTATTATGA
9029422 AATTTAAGTAAGCTGTGTATTGT
126 AATTTAAGTAAGCTGTGTATTGT
*
9029445 ATAAGTTATGTAGGTTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTACTATGAAAAT
1 ATAAGTTATGTA--TTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTATTATGAAAAT
* * * * *
9029510 TATGTAAGTTC-AATATTATGTAAGCTGTGTATTATAAACAATTATGTAAGTTGTGTATT
64 TATGTAAGTTCAAAAATTATGTAAGCTATGTATT-CAAA-AATTATGTAAGCTATGTATT
9029569 GAATAAGTTA
Statistics
Matches: 336, Mismatches: 54, Indels: 50
0.76 0.12 0.11
Matches are distributed among these distances:
139 1 0.00
140 12 0.04
141 1 0.00
142 79 0.24
143 7 0.02
144 3 0.01
145 1 0.00
146 2 0.01
147 1 0.00
149 5 0.01
150 17 0.05
151 205 0.61
152 2 0.01
ACGTcount: A:0.37, C:0.04, G:0.17, T:0.42
Consensus pattern (148 bp):
ATAAGTTATGTATTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTATTATGAAAATTA
TGTAAGTTCAAAAATTATGTAAGCTATGTATTCAAAAATTATGTAAGCTATGTATTATGAAATTT
AAGTAAGCTGTGTATTGT
Found at i:9029559 original size:126 final size:126
Alignment explanation
Indices: 9029333--9029604 Score: 438
Period size: 126 Copynumber: 2.2 Consensus size: 126
9029323 AAGTTCAATA
* * *
9029333 TTATGTAAGTTATGTAAGTTCAATATTATGTAAGTTATGTATTACGAAAATTATGTAAGTTCCAA
1 TTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTACTACGAAAATTATGTAAGTTCCAA
* * *
9029398 TATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAAGTTATGTAGG
66 TATTATGTAAGCTATGTATTATAAAAATTAAGTAAGCTGTGTATTGAATAAGTTATGTAGG
*
9029459 TTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTACTATGAAAATTATGTAAGTT-CAA
1 TTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTACTACGAAAATTATGTAAGTTCCAA
* * *
9029523 TATTATGTAAGCTGTGTATTATAAACAATTATGTAAGTTGTGTATTGAATAAGTTATGTAGG
66 TATTATGTAAGCTATGTATTATAAA-AATTAAGTAAGCTGTGTATTGAATAAGTTATGTAGG
9029585 TTATGAAAATTATGTAAGTT
1 TTATGAAAATTATGTAAGTT
9029605 ATGTACTGTG
Statistics
Matches: 135, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
125 26 0.19
126 109 0.81
ACGTcount: A:0.36, C:0.04, G:0.18, T:0.42
Consensus pattern (126 bp):
TTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTACTACGAAAATTATGTAAGTTCCAA
TATTATGTAAGCTATGTATTATAAAAATTAAGTAAGCTGTGTATTGAATAAGTTATGTAGG
Found at i:9029622 original size:25 final size:25
Alignment explanation
Indices: 9029588--9029672 Score: 73
Period size: 25 Copynumber: 3.3 Consensus size: 25
9029578 ATGTAGGTTA
9029588 TGAAAATTATGTAAGTTATGTACTG
1 TGAAAATTATGTAAGTTATGTACTG
* * *
9029613 TGAAAATTATTATTAAAGTTAAGTA-AG
1 TGAAAATTA-T-GT-AAGTTATGTACTG
* * *
9029640 TTCAATATTATGTAAGTTATGTACTA
1 -TGAAAATTATGTAAGTTATGTACTG
9029666 TGAAAAT
1 TGAAAAT
9029673 CTAAAAAAGT
Statistics
Matches: 44, Mismatches: 11, Indels: 10
0.68 0.17 0.15
Matches are distributed among these distances:
25 23 0.52
26 2 0.05
27 3 0.07
28 16 0.36
ACGTcount: A:0.41, C:0.04, G:0.15, T:0.40
Consensus pattern (25 bp):
TGAAAATTATGTAAGTTATGTACTG
Found at i:9030948 original size:39 final size:38
Alignment explanation
Indices: 9030905--9030983 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 38
9030895 CTAAAGAAAT
9030905 TGTGCCAAAACAGA-ATACCAAAAAAAGAATACCAAGTAA
1 TGTGCCAAAACA-ACATACC-AAAAAAGAATACCAAGTAA
* *
9030944 TGTGCCAAAACAATCCTACCAAAACAGAATACCAAGTAA
1 TGTGCCAAAACAA-CATACCAAAAAAGAATACCAAGTAA
9030983 T
1 T
9030984 CTACAAAGTC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
38 1 0.03
39 31 0.86
40 4 0.11
ACGTcount: A:0.52, C:0.22, G:0.11, T:0.15
Consensus pattern (38 bp):
TGTGCCAAAACAACATACCAAAAAAGAATACCAAGTAA
Found at i:9032324 original size:12 final size:12
Alignment explanation
Indices: 9032307--9032333 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
9032297 AAATTATGAC
9032307 ATTATTAATATT
1 ATTATTAATATT
9032319 ATTATTAATATT
1 ATTATTAATATT
9032331 ATT
1 ATT
9032334 TAAAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTATTAATATT
Found at i:9032876 original size:7 final size:7
Alignment explanation
Indices: 9032864--9032924 Score: 63
Period size: 7 Copynumber: 8.9 Consensus size: 7
9032854 ACTAAAGCGA
9032864 CCCAAAC
1 CCCAAAC
9032871 CCCAAA-
1 CCCAAAC
9032877 CCCAAAC
1 CCCAAAC
9032884 CCCAAAC
1 CCCAAAC
**
9032891 CTTAAAC
1 CCCAAAC
9032898 CCCAAAC
1 CCCAAAC
9032905 ACCC-AAC
1 -CCCAAAC
* *
9032912 CCCTAAG
1 CCCAAAC
9032919 CCCAAA
1 CCCAAA
9032925 ATACTAAACC
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
6 9 0.20
7 33 0.73
8 3 0.07
ACGTcount: A:0.43, C:0.51, G:0.02, T:0.05
Consensus pattern (7 bp):
CCCAAAC
Found at i:9032899 original size:14 final size:13
Alignment explanation
Indices: 9032863--9032924 Score: 70
Period size: 14 Copynumber: 4.5 Consensus size: 13
9032853 GACTAAAGCG
9032863 ACCCAAACCCCAA
1 ACCCAAACCCCAA
9032876 ACCCAAACCCCAA
1 ACCCAAACCCCAA
*
9032889 ACCTTAAACCCCAA
1 ACC-CAAACCCCAA
*
9032903 ACACCCAACCCCTAA
1 AC-CCAAACCCC-AA
*
9032918 GCCCAAA
1 ACCCAAA
9032925 ATACTAAACC
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
13 16 0.39
14 21 0.51
15 4 0.10
ACGTcount: A:0.44, C:0.50, G:0.02, T:0.05
Consensus pattern (13 bp):
ACCCAAACCCCAA
Found at i:9033423 original size:114 final size:113
Alignment explanation
Indices: 9033210--9033899 Score: 720
Period size: 114 Copynumber: 6.1 Consensus size: 113
9033200 AAACCTACAT
* * * * * * *
9033210 GCGTTTTTACATAAGCGCCACTAATTCTAATATACATCAAGACCAAACGCTGTGTTTTGGTTAAG
1 GCGTTTTTCCGTAACCGCCACTAATTCTTATATACATCAAGACAAAACGATGCGTTTTGGTTAAG
* * ** * *
9033275 ATATTTTGCGGCGATTCTTACAAAGCATCTCTAATACTCTGCTTTAGTG
66 ATATTTTGCGGCG-TTTTTACAAAACGCCGCTAATACTCTGCTTTAGCG
* * *
9033324 GCCTTTTTCCGTAACCGCCACTAATTCTTATATACCTCAAGATAAAACGATGCGTTTTGGTTAAG
1 GCGTTTTTCCGTAACCGCCACTAATTCTTATATACATCAAGACAAAACGATGCGTTTTGGTTAAG
* * * *
9033389 ATATTTTACGGCATTTTATACAAAACGCCGCTAATACTGTGCTATAGCG
66 ATATTTTGCGGCGTTTT-TACAAAACGCCGCTAATACTCTGCTTTAGCG
** * * * *
9033438 GCGTTTTTCCACAATCGCCACTAATTCTAATATACATTAAGACCAAAA-GCTGCGTTTTGGTTAA
1 GCGTTTTTCCGTAACCGCCACTAATTCTTATATACATCAAGA-CAAAACGATGCGTTTTGGTTAA
* * * * *
9033502 GATAATTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTATCCTTTAGCG
65 GATATTTTGCGGCGTTT-TTACAAAACGCCGCTAATACTCTGCTTTAGCG
* * *
9033552 GCGTTTTTCCGTAACCGCCACAAATTCTTATATACCTCAAGACAAAACGATGCATTTTGGTTAAG
1 GCGTTTTTCCGTAACCGCCACTAATTCTTATATACATCAAGACAAAACGATGCGTTTTGGTTAAG
* * * *
9033617 ATATTTTGCGGCGTTTCGTATAAAACGCCGCTAATACTGTGCTATAGCG
66 ATATTTTGCGGCGTTT-TTACAAAACGCCGCTAATACTCTGCTTTAGCG
** ** * * *
9033666 GCGTTTTTCCACAAGTGCCACTAATTCTGT-TATACATTAAGACAAAACGCTACGTTTTGGTTAA
1 GCGTTTTTCCGTAACCGCCACTAATTCT-TATATACATCAAGACAAAACGATGCGTTTTGGTTAA
* * * * * * *
9033730 GATAATTAGCAGCGTTTCTTACAAAGCCCCTCTAATACTCT-CATTTAGCA
65 GATATTTTGCGGCGTTT-TTACAAAACGCCGCTAATACTCTGC-TTTAGCG
* * *
9033780 GCGTTTTTCCGTAACCGCCACTAATTCTTATATACCTCAAGACCAAACGATGCATTTTGGTTAAG
1 GCGTTTTTCCGTAACCGCCACTAATTCTTATATACATCAAGACAAAACGATGCGTTTTGGTTAAG
* * * * * * *
9033845 ATATTTTGCGGCGTTTACTAAAAAATGCCGCTAATAATATACTATAGCG
66 ATATTTTGCGGCGTTT-TTACAAAACGCCGCTAATACTCTGCTTTAGCG
9033894 GCGTTT
1 GCGTTT
9033900 ATCATAAACG
Statistics
Matches: 469, Mismatches: 99, Indels: 16
0.80 0.17 0.03
Matches are distributed among these distances:
113 10 0.02
114 452 0.96
115 7 0.01
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (113 bp):
GCGTTTTTCCGTAACCGCCACTAATTCTTATATACATCAAGACAAAACGATGCGTTTTGGTTAAG
ATATTTTGCGGCGTTTTTACAAAACGCCGCTAATACTCTGCTTTAGCG
Found at i:9033612 original size:228 final size:227
Alignment explanation
Indices: 9033210--9033927 Score: 1001
Period size: 228 Copynumber: 3.2 Consensus size: 227
9033200 AAACCTACAT
* * * * * *
9033210 GCGTTTTTACATAAGCGCCACTAATTCTAATATACATCAAGACCAAACGCTGTGTTTTGGTTAAG
1 GCGTTTTTCCACAATCGCCACTAATTCTAATATACATTAAGACCAAAAGCTGCGTTTTGGTTAAG
* * * * * *
9033275 ATATTTTGCGGCGATTCTTACAAAGCATCTCTAATACTCTGCTTTAGTGGCCTTTTTCCGTAACC
66 ATAATTTGCGGCGTTTCTTACAAAGCACCTCTAATACTCTCCTTTAGCGGCGTTTTTCCGTAACC
* * *
9033340 GCCACTAATTCTTATATACCTCAAGATAAAACGATGCGTTTTGGTTAAGATATTTTACGGCATTT
131 GCCACTAATTCTTATATACCTCAAGACAAAACGATGCATTTTGGTTAAGATATTTTGCGGC-TTT
*
9033405 TATACAAAACGCCGCTAATACTGTGCTATAGCG
195 TATAAAAAACGCCGCTAATACTGTGCTATAGCG
9033438 GCGTTTTTCCACAATCGCCACTAATTCTAATATACATTAAGACCAAAAGCTGCGTTTTGGTTAAG
1 GCGTTTTTCCACAATCGCCACTAATTCTAATATACATTAAGACCAAAAGCTGCGTTTTGGTTAAG
* *
9033503 ATAATTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTATCCTTTAGCGGCGTTTTTCCGTAACC
66 ATAATTTGCGGCGTTTCTTACAAAGCACCTCTAATACTCTCCTTTAGCGGCGTTTTTCCGTAACC
*
9033568 GCCACAAATTCTTATATACCTCAAGACAAAACGATGCATTTTGGTTAAGATATTTTGCGGCGTTT
131 GCCACTAATTCTTATATACCTCAAGACAAAACGATGCATTTTGGTTAAGATATTTTGCGGC-TTT
** *
9033633 CGTATAAAACGCCGCTAATACTGTGCTATAGCG
195 TATAAAAAACGCCGCTAATACTGTGCTATAGCG
** *
9033666 GCGTTTTTCCACAAGT-GCCACTAATTCTGTTATACATTAAGA-CAAAACGCTACGTTTTGGTTA
1 GCGTTTTTCCACAA-TCGCCACTAATTCTAATATACATTAAGACCAAAA-GCTGCGTTTTGGTTA
* * * * *
9033729 AGATAATTAGCAGCGTTTCTTACAAAGCCCCTCTAATACTCTCATTTAGCAGCGTTTTTCCGTAA
64 AGATAATTTGCGGCGTTTCTTACAAAGCACCTCTAATACTCTCCTTTAGCGGCGTTTTTCCGTAA
* *
9033794 CCGCCACTAATTCTTATATACCTCAAGACCAAACGATGCATTTTGGTTAAGATATTTTGCGGCGT
129 CCGCCACTAATTCTTATATACCTCAAGACAAAACGATGCATTTTGGTTAAGATATTTTGCGGCTT
* * * *
9033859 TTACTAAAAAATGCCGCTAATAATATACTATAGCG
194 TTA-TAAAAAACGCCGCTAATACTGTGCTATAGCG
* * * * *
9033894 GCGTTTAT-CATAAACGCCACCAAGTCTAATATAC
1 GCGTTTTTCCACAATCGCCACTAATTCTAATATAC
9033928 CTCGGGAACA
Statistics
Matches: 438, Mismatches: 48, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
227 26 0.06
228 411 0.94
229 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (227 bp):
GCGTTTTTCCACAATCGCCACTAATTCTAATATACATTAAGACCAAAAGCTGCGTTTTGGTTAAG
ATAATTTGCGGCGTTTCTTACAAAGCACCTCTAATACTCTCCTTTAGCGGCGTTTTTCCGTAACC
GCCACTAATTCTTATATACCTCAAGACAAAACGATGCATTTTGGTTAAGATATTTTGCGGCTTTT
ATAAAAAACGCCGCTAATACTGTGCTATAGCG
Found at i:9033840 original size:342 final size:341
Alignment explanation
Indices: 9033210--9033930 Score: 813
Period size: 342 Copynumber: 2.1 Consensus size: 341
9033200 AAACCTACAT
* * * * * **
9033210 GCGTTTTTACATAAGCGCCACTAATTCTAATATACATCAAGACCAAACGCTGTGTTTTGGTTAAG
1 GCGTTTTT-CATAAACGCCACAAATTCTAATATACCTCAAGACAAAACGATGCATTTTGGTTAAG
* * * * * * **
9033275 ATATTTTGCGGCGATTCTTACAAAGCATCTCTAATACTCTGCTTTAGTGGCCTTTTTCCGTAACC
65 ATATTTTGCGGCGATTCGTACAAAACACCGCTAATACTCTGCTATAGCGGCCTTTTTCCACAACC
* * * * *
9033340 GCCACTAATTCTTATATACCTCAAGATAAAACGATGCGTTTTGGTTAAGATATTTTACGGCATTT
130 GCCACTAATTCTTATATACATCAAGACAAAACGATACGTTTTGGTTAAGATATATTACAGCATTT
* * * *
9033405 TATACAAAACGCCGCTAATACTGTGCTATAGCGGCGTTTTTCCACAATCGCCACTAATTCTAATA
195 TATACAAAACCCCGCTAATACTCTGCTATAGCAGCGTTTTTCCACAACCGCCACTAATTCTAATA
* * * * * *
9033470 TACATTAAGACCAAAAGCTGCGTTTTGGTTAAGATAATTTGCGGCGTTT-CTTACAAAGCGCCTC
260 TACATCAAGACCAAAAGATGCATTTTGGTTAAGATAATTTGCGGCGTTTAC-TAAAAAACGCCGC
* * *
9033534 TAATACTATCCTTTAGCG
324 TAATAATATACTATAGCG
* * *
9033552 GCGTTTTTCCGTAACCGCCACAAATTCTTATATACCTCAAGACAAAACGATGCATTTTGGTTAAG
1 GCGTTTTT-CATAAACGCCACAAATTCTAATATACCTCAAGACAAAACGATGCATTTTGGTTAAG
* * * * * **
9033617 ATATTTTGCGGCGTTTCGTATAAAACGCCGCTAATACTGTGCTATAGCGGCGTTTTTCCACAAGT
65 ATATTTTGCGGCGATTCGTACAAAACACCGCTAATACTCTGCTATAGCGGCCTTTTTCCACAACC
* * *
9033682 GCCACTAATTCTGT-TATACATTAAGACAAAACGCTACGTTTTGGTTAAGATA-ATTAGCAGCGT
130 GCCACTAATTCT-TATATACATCAAGACAAAACGATACGTTTTGGTTAAGATATATTA-CAGCAT
* * * **
9033745 TTCT-TACAAAGCCCCTCTAATACTCT-CATTTAGCAGCGTTTTTCCGTAACCGCCACTAATTCT
193 TT-TATACAAAACCCCGCTAATACTCTGC-TATAGCAGCGTTTTTCCACAACCGCCACTAATTCT
* * * * *
9033808 TATATACCTCAAGACCAAACGATGCATTTTGGTTAAGATATTTTGCGGCGTTTACTAAAAAATGC
256 AATATACATCAAGACCAAAAGATGCATTTTGGTTAAGATAATTTGCGGCGTTTACTAAAAAACGC
9033873 CGCTAATAATATACTATAGCG
321 CGCTAATAATATACTATAGCG
* * *
9033894 GCGTTTATCATAAACGCCACCAAGTCTAATATACCTC
1 GCGTTTTTCATAAACGCCACAAATTCTAATATACCTC
9033931 GGGAACAAAC
Statistics
Matches: 312, Mismatches: 62, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
341 28 0.09
342 281 0.90
343 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (341 bp):
GCGTTTTTCATAAACGCCACAAATTCTAATATACCTCAAGACAAAACGATGCATTTTGGTTAAGA
TATTTTGCGGCGATTCGTACAAAACACCGCTAATACTCTGCTATAGCGGCCTTTTTCCACAACCG
CCACTAATTCTTATATACATCAAGACAAAACGATACGTTTTGGTTAAGATATATTACAGCATTTT
ATACAAAACCCCGCTAATACTCTGCTATAGCAGCGTTTTTCCACAACCGCCACTAATTCTAATAT
ACATCAAGACCAAAAGATGCATTTTGGTTAAGATAATTTGCGGCGTTTACTAAAAAACGCCGCTA
ATAATATACTATAGCG
Found at i:9039422 original size:43 final size:43
Alignment explanation
Indices: 9039300--9039569 Score: 217
Period size: 43 Copynumber: 6.3 Consensus size: 43
9039290 TTTCTCACAA
* * * * *
9039300 AAACACCGCTATAGAACATGACCTTTAACGGCGTTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCTGCGCTTTTCCCAC
* ** * *
9039343 AAATGCTACTAAAGAACATGACCTATATC-GACGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCTG-CGCTTTTCCCAC
* * *
9039386 AAATGCCGCTAAAGAACATGACCTTTAGCTGTGCTTTTCTCC-T
1 AAACGCCGCTAAAGAACATGACCTTTAGCTGCGCTTTTC-CCAC
* * *
9039429 AAACACCGCTAAAGAACATGACTTTTAGTTGCGCTTTTCCC-C
1 AAACGCCGCTAAAGAACATGACCTTTAGCTGCGCTTTTCCCAC
* * * *
9039471 AAACACCGTTAAAGAATATTGACCTTTAG-TAGCGCTTTT-CCAA
1 AAACGCCGCTAAAGAACA-TGACCTTTAGCT-GCGCTTTTCCCAC
* ** * * * * *
9039514 AAATGCTTCTAAAGAACATGACATTTAGCGGTGTTTTTCCCAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCTGCGCTTTTCCCAC
9039557 AAACGCCGCTAAA
1 AAACGCCGCTAAA
9039570 AGTCATGTTC
Statistics
Matches: 182, Mismatches: 37, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
42 37 0.20
43 142 0.78
44 3 0.02
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCTGCGCTTTTCCCAC
Found at i:9040254 original size:33 final size:33
Alignment explanation
Indices: 9040217--9040301 Score: 120
Period size: 33 Copynumber: 2.6 Consensus size: 33
9040207 AGAAATAAAG
*
9040217 GGATTTGGGAAATTGGGAATTTTGATCAGAAAA
1 GGATTTGGGAAGTTGGGAATTTTGATCAGAAAA
*
9040250 GGATTTGGGAAGTTGAGG-ATTTTGATCAGAAAG
1 GGATTTGGGAAGTTG-GGAATTTTGATCAGAAAA
9040283 GGATTAT-GGAAGTTGGGAA
1 GGATT-TGGGAAGTTGGGAA
9040302 ATTGGGGAAG
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
32 2 0.04
33 42 0.89
34 3 0.06
ACGTcount: A:0.33, C:0.02, G:0.35, T:0.29
Consensus pattern (33 bp):
GGATTTGGGAAGTTGGGAATTTTGATCAGAAAA
Found at i:9041289 original size:54 final size:56
Alignment explanation
Indices: 9041185--9041296 Score: 158
Period size: 54 Copynumber: 2.0 Consensus size: 56
9041175 TTTTTATTTT
* * *
9041185 ATTTAAAATTGATCTTTTTAATTAATAATTTTTTATTTATATAAATAAAATAATAA
1 ATTTAAAATTGATCTTTTTAATTAATAATTATTTATTTATACAAACAAAATAATAA
*
9041241 ATTTAAAA-T-AT-TTTTTAATTAATAAATTATTTATTTATCCAAACAAAATAATAA
1 ATTTAAAATTGATCTTTTTAATTAAT-AATTATTTATTTATACAAACAAAATAATAA
9041295 AT
1 AT
9041297 ATGTAGTTAT
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
53 12 0.24
54 30 0.59
55 1 0.02
56 8 0.16
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (56 bp):
ATTTAAAATTGATCTTTTTAATTAATAATTATTTATTTATACAAACAAAATAATAA
Found at i:9041973 original size:18 final size:19
Alignment explanation
Indices: 9041950--9041989 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
9041940 CATAATGATA
9041950 TATATAATGTA-AT-TTTAT
1 TATATAAT-TACATATTTAT
9041968 TATATAATTACATATTTAT
1 TATATAATTACATATTTAT
9041987 TAT
1 TAT
9041990 TTTATTTCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 2 0.10
18 10 0.50
19 8 0.40
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (19 bp):
TATATAATTACATATTTAT
Found at i:9041994 original size:95 final size:100
Alignment explanation
Indices: 9041826--9042025 Score: 304
Period size: 95 Copynumber: 2.0 Consensus size: 100
9041816 TTTAAAATAT
9041826 AAAATATATTTAACATAATGATAAATATCACATATATAATTTTTCATTATATAATTACATATTTA
1 AAAATATATTTAACATAATGAT-AATATCACATATATAATTTTTCATTATATAATTACATATTTA
*
9041891 TTGATTTATTTATATAAATAAAAGAGTTATTAATTA
65 TTGATTTATTTATATAAATAAAAAAGTTATTAATTA
* *
9041927 AAAATATATTTAACATAATGAT-ATAT-ATA-ATGTAA-TTTT-ATTATATAATTACATATTTAT
1 AAAATATATTTAACATAATGATAATATCACATATATAATTTTTCATTATATAATTACATATTTAT
*
9041987 T-ATTTTATTTCTATAAATAAAAAAGTTATTAATTA
66 TGA-TTTATTTATATAAATAAAAAAGTTATTAATTA
9042022 AAAA
1 AAAA
9042026 GATGAATTAA
Statistics
Matches: 94, Mismatches: 4, Indels: 8
0.89 0.04 0.08
Matches are distributed among these distances:
94 1 0.01
95 56 0.60
96 4 0.04
97 5 0.05
98 2 0.02
99 4 0.04
101 22 0.23
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (100 bp):
AAAATATATTTAACATAATGATAATATCACATATATAATTTTTCATTATATAATTACATATTTAT
TGATTTATTTATATAAATAAAAAAGTTATTAATTA
Found at i:9042199 original size:16 final size:15
Alignment explanation
Indices: 9042164--9042202 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
9042154 TATATTAAAG
9042164 AAAAACACATTTTTC
1 AAAAACACATTTTTC
9042179 AAAAATCAC-TTTTTC
1 AAAAA-CACATTTTTC
9042194 AAAAA-ACAT
1 AAAAACACAT
9042203 CCCTCTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 2 0.09
14 1 0.05
15 16 0.73
16 3 0.14
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (15 bp):
AAAAACACATTTTTC
Found at i:9042516 original size:24 final size:24
Alignment explanation
Indices: 9042489--9042540 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
9042479 CAAAGTATAA
*
9042489 AGAGAGAAAAAAAAGTAGAATG-TT
1 AGAGAGAAAAAAAAG-AGAAAGATT
* *
9042513 AGAGAGTAATAAAAGAGAAAGATT
1 AGAGAGAAAAAAAAGAGAAAGATT
9042537 AGAG
1 AGAG
9042541 TGCAATTGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.58, C:0.00, G:0.27, T:0.15
Consensus pattern (24 bp):
AGAGAGAAAAAAAAGAGAAAGATT
Found at i:9068350 original size:24 final size:23
Alignment explanation
Indices: 9068318--9068390 Score: 74
Period size: 24 Copynumber: 3.1 Consensus size: 23
9068308 TACGGGTTGT
*
9068318 ATAACGGGAAGCTCATAAGAGCC
1 ATAATGGGAAGCTCATAAGAGCC
**
9068341 ATAATTGGGAAGCTCATGTGAGCC
1 ATAA-TGGGAAGCTCATAAGAGCC
* **
9068365 AATAATGGGCAGCTCCGAAGAGCC
1 -ATAATGGGAAGCTCATAAGAGCC
9068389 AT
1 AT
9068391 TAATCGAGAA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
23 6 0.15
24 30 0.75
25 4 0.10
ACGTcount: A:0.34, C:0.21, G:0.27, T:0.18
Consensus pattern (23 bp):
ATAATGGGAAGCTCATAAGAGCC
Found at i:9068460 original size:23 final size:23
Alignment explanation
Indices: 9068375--9068463 Score: 63
Period size: 25 Copynumber: 3.7 Consensus size: 23
9068365 AATAATGGGC
9068375 AGCTCC-GAAGAGCCATTAATCGAGA
1 AGCTCCAG-AGAGCCA-T-ATCGAGA
* * *
9068400 AACTCCAGATAGCCATATATCGGGA
1 AGCTCCAGAGAGCC--ATATCGAGA
* * *
9068425 AGTTCAAGCGAGCCATATCGAGA
1 AGCTCCAGAGAGCCATATCGAGA
*
9068448 AGCTCCGGAGAGCCAT
1 AGCTCCAGAGAGCCAT
9068464 TAATCAGGAA
Statistics
Matches: 48, Mismatches: 13, Indels: 8
0.70 0.19 0.12
Matches are distributed among these distances:
23 20 0.42
25 25 0.52
26 2 0.04
27 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.25, T:0.17
Consensus pattern (23 bp):
AGCTCCAGAGAGCCATATCGAGA
Found at i:9068486 original size:26 final size:26
Alignment explanation
Indices: 9068456--9068515 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
9068446 GAAGCTCCGG
*
9068456 AGAGCCATTAATCAGGAAGATCACAA
1 AGAGCCATTAAACAGGAAGATCACAA
* * *
9068482 AGAGCCTTTAAACGGGAAGCTCACAA
1 AGAGCCATTAAACAGGAAGATCACAA
9068508 AGAGCCAT
1 AGAGCCAT
9068516 ATATCGGGAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.42, C:0.22, G:0.22, T:0.15
Consensus pattern (26 bp):
AGAGCCATTAAACAGGAAGATCACAA
Found at i:9075061 original size:20 final size:19
Alignment explanation
Indices: 9075036--9075083 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
9075026 AAAACAACTG
* *
9075036 TTGTTTTCTTGCATTTTTTA
1 TTGTTTTCTT-AATATTTTA
9075056 TTGTTTTGC-TAATATTTTA
1 TTGTTTT-CTTAATATTTTA
9075075 TTGTTTTCT
1 TTGTTTTCT
9075084 CACTACTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 1 0.04
19 14 0.58
20 8 0.33
21 1 0.04
ACGTcount: A:0.12, C:0.08, G:0.10, T:0.69
Consensus pattern (19 bp):
TTGTTTTCTTAATATTTTA
Found at i:9079543 original size:17 final size:17
Alignment explanation
Indices: 9079521--9079554 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9079511 ATCCACTAAT
*
9079521 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
9079538 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
9079555 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:9084179 original size:17 final size:17
Alignment explanation
Indices: 9084157--9084190 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9084147 ATCCACTAAT
*
9084157 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
9084174 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
9084191 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:9084273 original size:20 final size:20
Alignment explanation
Indices: 9084248--9084297 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
9084238 TGGCTTAAAA
9084248 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
9084268 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
9084285 GTGGTAGTGGATT
1 TTGGTAGTGGATT
9084298 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:9088911 original size:20 final size:20
Alignment explanation
Indices: 9088886--9088935 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
9088876 TGGCTTAAAA
9088886 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
9088906 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
9088923 GTGGTAGTGGATT
1 TTGGTAGTGGATT
9088936 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:9094513 original size:30 final size:31
Alignment explanation
Indices: 9094468--9094526 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
9094458 ATATTTAGGG
*
9094468 TAAAAAAACACAACAATCACTAAA-TTTGGT
1 TAAAAAAACAAAACAATCACTAAACTTTGGT
*
9094498 TAAAATAACAAAACAATCACTAAACTTTG
1 TAAAAAAACAAAACAATCACTAAACTTTG
9094527 AAAAGTTACA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.54, C:0.17, G:0.05, T:0.24
Consensus pattern (31 bp):
TAAAAAAACAAAACAATCACTAAACTTTGGT
Found at i:9094574 original size:30 final size:29
Alignment explanation
Indices: 9094514--9094576 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 29
9094504 AACAAAACAA
* *
9094514 TCACTAAACTTTGAAAAGTTACAACTTAG
1 TCACTAAACTTTGAAAAATAACAACTTAG
*
9094543 TCACTGAACTTTAGAAAAATAACAAGC-TAG
1 TCACTAAACTTT-GAAAAATAACAA-CTTAG
9094573 TCAC
1 TCAC
9094577 CAATAACCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 11 0.38
30 17 0.59
31 1 0.03
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.27
Consensus pattern (29 bp):
TCACTAAACTTTGAAAAATAACAACTTAG
Found at i:9100625 original size:37 final size:37
Alignment explanation
Indices: 9100560--9100668 Score: 168
Period size: 37 Copynumber: 3.0 Consensus size: 37
9100550 TACGTATAAT
* *
9100560 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
9100595 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
9100632 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
9100669 AGAAGCTATC
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
35 10 0.15
36 3 0.04
37 55 0.81
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:9100685 original size:46 final size:46
Alignment explanation
Indices: 9100632--9100756 Score: 160
Period size: 52 Copynumber: 2.6 Consensus size: 46
9100622 TAAGTGTAGC
*
9100632 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCAGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCAGAAGCTAT
* *
9100678 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCAGAAGCTAT
*
9100730 CACCTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
9100757 AGTACTCAAA
Statistics
Matches: 69, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
46 26 0.38
48 1 0.01
50 1 0.01
52 41 0.59
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCAGAAGCTAT
Found at i:9100711 original size:52 final size:52
Alignment explanation
Indices: 9100643--9100742 Score: 164
Period size: 52 Copynumber: 1.9 Consensus size: 52
9100633 ACTTATCACT
* *
9100643 TTGTCTCTTGATCAGATAAGTATAGCAGAAGCTATCACTTATCACTTTCCAC
1 TTGTCACTTGATCAGATAAGTATAGCAGAAGCTATCACCTATCACTTTCCAC
* *
9100695 TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACCTATCACTTT
1 TTGTCACTTGATCAGATAAGTATAGCAGAAGCTATCACCTATCACTTT
9100743 GTCACTTGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (52 bp):
TTGTCACTTGATCAGATAAGTATAGCAGAAGCTATCACCTATCACTTTCCAC
Found at i:9103747 original size:16 final size:16
Alignment explanation
Indices: 9103726--9103759 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9103716 GACTTAAAAG
9103726 TTAAAACTAATTCTTA
1 TTAAAACTAATTCTTA
* *
9103742 TTAAAATTAATTGTTA
1 TTAAAACTAATTCTTA
9103758 TT
1 TT
9103760 GAATTTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.06, G:0.03, T:0.50
Consensus pattern (16 bp):
TTAAAACTAATTCTTA
Found at i:9103860 original size:25 final size:25
Alignment explanation
Indices: 9103830--9103877 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
9103820 AAGATTACTT
9103830 ATTTGAATTTAATTACAAACAATTA
1 ATTTGAATTTAATTACAAACAATTA
9103855 ATTTGAATTTAATTACAAACAAT
1 ATTTGAATTTAATTACAAACAAT
9103878 CAAATCTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (25 bp):
ATTTGAATTTAATTACAAACAATTA
Found at i:9104674 original size:9 final size:9
Alignment explanation
Indices: 9104662--9104698 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
9104652 ATCATCATCA
9104662 TCATCGTCC
1 TCATCGTCC
9104671 TCATCGTCGC
1 TCATCGTC-C
9104681 -CATCGTCC
1 TCATCGTCC
9104689 TCATCGTCC
1 TCATCGTCC
9104698 T
1 T
9104699 TTTTGCAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 1 0.04
9 24 0.92
10 1 0.04
ACGTcount: A:0.11, C:0.43, G:0.14, T:0.32
Consensus pattern (9 bp):
TCATCGTCC
Found at i:9107159 original size:13 final size:13
Alignment explanation
Indices: 9107141--9107274 Score: 103
Period size: 13 Copynumber: 10.2 Consensus size: 13
9107131 AATTTAAAAG
*
9107141 TTAAAACATTATA
1 TTAAAACAGTATA
*
9107154 TTAAAACAATATAA
1 TTAAAACAGTAT-A
*
9107168 TTATAACAGTATA
1 TTAAAACAGTATA
*
9107181 TTAAAACAATATA
1 TTAAAACAGTATA
*
9107194 TTAAAAAAGTATA
1 TTAAAACAGTATA
* *
9107207 TTTATAATAGTATA
1 -TTAAAACAGTATA
*
9107221 TTAAAATAGTATA
1 TTAAAACAGTATA
* * *
9107234 TTATAA-ATTTTA
1 TTAAAACAGTATA
*
9107246 -TAACAATA-TATTA
1 TTAA-AACAGTA-TA
9107259 TTAAAACAGTATA
1 TTAAAACAGTATA
9107272 TTA
1 TTA
9107275 CATTTAAAAT
Statistics
Matches: 98, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
11 2 0.02
12 7 0.07
13 62 0.63
14 27 0.28
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (13 bp):
TTAAAACAGTATA
Found at i:9107175 original size:27 final size:27
Alignment explanation
Indices: 9107109--9107208 Score: 105
Period size: 27 Copynumber: 3.7 Consensus size: 27
9107099 AAATTAAATG
* **
9107109 TATATTTATAACAGTATATTAAAA-TT
1 TATAATTATAACAGTATATTAAAACAA
* * *
9107135 TAAAAGTTAAAACATTATATTAAAACAA
1 TATAA-TTATAACAGTATATTAAAACAA
9107163 TATAATTATAACAGTATATTAAAACAA
1 TATAATTATAACAGTATATTAAAACAA
* *
9107190 TAT-ATTAAAAAAGTATATT
1 TATAATTATAACAGTATATT
9107209 TATAATAGTA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
26 17 0.28
27 40 0.66
28 4 0.07
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.37
Consensus pattern (27 bp):
TATAATTATAACAGTATATTAAAACAA
Found at i:9107186 original size:40 final size:40
Alignment explanation
Indices: 9107141--9107236 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
9107131 AATTTAAAAG
*
9107141 TTAAAACATTATATTAAAACAA-TATAATTATAACAGTATA
1 TTAAAACAATATATTAAAA-AAGTATAATTATAACAGTATA
* *
9107181 TTAAAACAATATATTAAAAAAGTATATTTATAATAGTATA
1 TTAAAACAATATATTAAAAAAGTATAATTATAACAGTATA
* *
9107221 TTAAAATAGTATATTA
1 TTAAAACAATATATTA
9107237 TAAATTTTAT
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
39 2 0.04
40 48 0.96
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (40 bp):
TTAAAACAATATATTAAAAAAGTATAATTATAACAGTATA
Found at i:9108996 original size:38 final size:38
Alignment explanation
Indices: 9108912--9109028 Score: 139
Period size: 38 Copynumber: 3.1 Consensus size: 38
9108902 ACATTAACAG
* * * *
9108912 AACACCATTAACAGCAAAAATAAAAAACA-CA-ACCATT
1 AACAACATTAACAGC-AAAATCAAAATCAGAACACCATT
* * *
9108949 AACAGCATTAAGAGCAAACTCAAAATCAGAACACCATT
1 AACAACATTAACAGCAAAATCAAAATCAGAACACCATT
*
9108987 AACAACATTAACAGCAAAATCAAAATCAGAGCACCATT
1 AACAACATTAACAGCAAAATCAAAATCAGAACACCATT
9109025 AACA
1 AACA
9109029 GCAAAAATCA
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
36 10 0.15
37 14 0.21
38 44 0.65
ACGTcount: A:0.55, C:0.24, G:0.07, T:0.15
Consensus pattern (38 bp):
AACAACATTAACAGCAAAATCAAAATCAGAACACCATT
Done.