Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 40 of 226
Found at i:13747402 original size:84 final size:82
Alignment explanation
Indices: 13747227--13747558 Score: 367
Period size: 84 Copynumber: 4.0 Consensus size: 82
13747217 TTTTGTATAA
* * * *** ** *
13747227 AAGCGCCACTAAAGAACATGTTCTTTTGCGGCGTTTGTAAAAAATGCCACTAAAGAACATGTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTTAAGCGCCGCTAAAGAACATGTTCT
*******
13747292 TTAGCGGCGATTAGAAAAA
65 TTAGCGGCG-TTTTTTCCT
* *
13747311 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCCTTAAGCGCCGCTAAAGAACATGTTC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTT--TTTAAGCGCCGCTAAAGAACATGTTC
13747376 TTTAGCGGCGTTTTTTCCT
64 TTTAGCGGCGTTTTTTCCT
* * * *
13747395 AAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTACAAACGCCGCTAAAGAACATGTTC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTT--AAGCGCCGCTAAAGAACATGTTC
*
13747460 TTTAGCGGCGTTTTTTTCT
64 TTTAGCGGCGTTTTTTCCT
*
13747479 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGGTC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTT-TAAGCGCCGCTAAAGAACATGTTC
*
13747544 TTTAACGGCGTTTTT
64 TTTAGCGGCGTTTTT
13747559 GTTTGTAAAC
Statistics
Matches: 212, Mismatches: 30, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
82 2 0.01
83 1 0.00
84 172 0.81
85 36 0.17
86 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (82 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTAAGCGCCGCTAAAGAACATGTTCTT
TAGCGGCGTTTTTTCCT
Found at i:13747558 original size:42 final size:42
Alignment explanation
Indices: 13747314--13747558 Score: 359
Period size: 42 Copynumber: 5.8 Consensus size: 42
13747304 AGAAAAAAAA
**
13747314 CGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTCCCTTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTC-TAAG
* *
13747356 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
* * * *
13747398 CGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTAC-AAA
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTT-CTAAG
*
13747440 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
13747482 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
* *
13747524 CGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTT
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
13747559 GTTTGTAAAC
Statistics
Matches: 186, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
41 1 0.01
42 178 0.96
43 7 0.04
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
Found at i:13747558 original size:126 final size:126
Alignment explanation
Indices: 13747311--13747558 Score: 408
Period size: 126 Copynumber: 2.0 Consensus size: 126
13747301 ATTAGAAAAA
*
13747311 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCCTTAAGCGCCGCTAAAGAACATGTTC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCCTTAAGCGCCGCTAAAGAACATGATC
**
13747376 TTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTAC
66 TTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGGTCTTTAACGGCATTTTTTTAC
* **
13747437 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTT-TTTCTAAGCGCCGCTAAAGAACATGAT
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCCT-TAAGCGCCGCTAAAGAACATGAT
* *
13747501 CTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTT
65 CTTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGGTCTTTAACGGCATTTTT
13747559 GTTTGTAAAC
Statistics
Matches: 113, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
125 1 0.01
126 112 0.99
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (126 bp):
AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCCTTAAGCGCCGCTAAAGAACATGATC
TTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGGTCTTTAACGGCATTTTTTTAC
Found at i:13748829 original size:17 final size:19
Alignment explanation
Indices: 13748807--13748845 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
13748797 ACAAGGGCTT
*
13748807 AAATA-TCATTATAAAC-C
1 AAATATTCATTACAAACAC
13748824 AAATATTCATTACAAACAC
1 AAATATTCATTACAAACAC
13748843 AAA
1 AAA
13748846 CAAGTTTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 10 0.53
19 4 0.21
ACGTcount: A:0.56, C:0.18, G:0.00, T:0.26
Consensus pattern (19 bp):
AAATATTCATTACAAACAC
Found at i:13751693 original size:32 final size:32
Alignment explanation
Indices: 13751643--13751705 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
13751633 TGCAATTTTA
*
13751643 GTACCGATTTAAGACTGGAACAGTATGTATTT
1 GTACCGATATAAGACTGGAACAGTATGTATTT
*
13751675 GTACTGATATAAGACTGGAACAGTATGTATT
1 GTACCGATATAAGACTGGAACAGTATGTATT
13751706 AATTTAAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (32 bp):
GTACCGATATAAGACTGGAACAGTATGTATTT
Found at i:13753342 original size:22 final size:22
Alignment explanation
Indices: 13753314--13753357 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
13753304 GAGATTTCAG
*
13753314 GTTTTCAATGTATAAGTCAACC
1 GTTTTCAATGTATAAGCCAACC
13753336 GTTTTCAATGTATAAGCCAACC
1 GTTTTCAATGTATAAGCCAACC
13753358 TTAAAGGGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (22 bp):
GTTTTCAATGTATAAGCCAACC
Found at i:13774935 original size:20 final size:20
Alignment explanation
Indices: 13774907--13774944 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
13774897 TATTTTCCAA
*
13774907 TAAATCATTTTACAGAAAAG
1 TAAAACATTTTACAGAAAAG
*
13774927 TAAAACATTTTCCAGAAA
1 TAAAACATTTTACAGAAA
13774945 TCATTTTACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.08, T:0.29
Consensus pattern (20 bp):
TAAAACATTTTACAGAAAAG
Found at i:13774949 original size:34 final size:35
Alignment explanation
Indices: 13774893--13774959 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
13774883 CAAACACCAG
* *
13774893 AAAATATTTTCCAATAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAAGAAATCATTTTACAGAAAAGT
13774928 AAAACATTTTCC-AGAAATCATTTTACAGAAAA
1 AAAACATTTTCCAAGAAATCATTTTACAGAAAA
13774960 TATTTTATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 19 0.63
35 11 0.37
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAAGAAATCATTTTACAGAAAAGT
Found at i:13777866 original size:3 final size:3
Alignment explanation
Indices: 13777858--13777890 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
13777848 ATCAGTGAGA
13777858 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
13777891 CTTTTCTGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:13809553 original size:25 final size:25
Alignment explanation
Indices: 13809518--13809656 Score: 68
Period size: 25 Copynumber: 5.6 Consensus size: 25
13809508 ACAAGCTGTA
* *
13809518 AACGGAAAGCTCCTCTGAGCTGA-AT
1 AACGGGAAGCTCATCTGAGCT-ATAT
* * *
13809543 AATGGGAAGCTTATGTGAGCTATAT
1 AACGGGAAGCTCATCTGAGCTATAT
*
13809568 AACGGGAAGCTCATGC-GAGCTAAAT
1 AACGGGAAGCTCAT-CTGAGCTATAT
* * * ** *
13809593 ATCCGGAAGTTCATGAGAGCTAAAT
1 AACGGGAAGCTCATCTGAGCTATAT
** * * *
13809618 ATTGTGAAGCTCATGC-AAGCTAAAT
1 AACGGGAAGCTCAT-CTGAGCTATAT
*
13809643 ATCGGGAAGCTCAT
1 AACGGGAAGCTCAT
13809657 GAGAATGGTG
Statistics
Matches: 89, Mismatches: 21, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
24 1 0.01
25 88 0.99
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (25 bp):
AACGGGAAGCTCATCTGAGCTATAT
Found at i:13809601 original size:50 final size:51
Alignment explanation
Indices: 13809547--13809660 Score: 144
Period size: 50 Copynumber: 2.3 Consensus size: 51
13809537 CTGAATAATG
* * *
13809547 GGAAGCTT-ATGTGAGCTATATAACGGGAAGCTCATGCGAGCTAAATATCC
1 GGAAGCTTCATGAGAGCTAAATAACGGGAAGCTCATGCAAGCTAAATATCC
** * *
13809597 GGAAG-TTCATGAGAGCTAAATATTGTGAAGCTCATGCAAGCTAAATATCG
1 GGAAGCTTCATGAGAGCTAAATAACGGGAAGCTCATGCAAGCTAAATATCC
13809647 GGAAGC-TCATGAGA
1 GGAAGCTTCATGAGA
13809661 ATGGTGGTGT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
49 2 0.04
50 53 0.96
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (51 bp):
GGAAGCTTCATGAGAGCTAAATAACGGGAAGCTCATGCAAGCTAAATATCC
Found at i:13809657 original size:25 final size:25
Alignment explanation
Indices: 13809546--13809657 Score: 118
Period size: 25 Copynumber: 4.5 Consensus size: 25
13809536 GCTGAATAAT
* ** * *
13809546 GGGAAGCTTATGTGAGCTATATAAC
1 GGGAAGCTCATGCAAGCTAAATATC
*
13809571 GGGAAGCTCATGCGAGCTAAATATC
1 GGGAAGCTCATGCAAGCTAAATATC
* * *
13809596 CGGAAGTTCATG-AGAGCTAAATATT
1 GGGAAGCTCATGCA-AGCTAAATATC
*
13809621 GTGAAGCTCATGCAAGCTAAATATC
1 GGGAAGCTCATGCAAGCTAAATATC
13809646 GGGAAGCTCATG
1 GGGAAGCTCATG
13809658 AGAATGGTGG
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
25 71 0.99
26 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (25 bp):
GGGAAGCTCATGCAAGCTAAATATC
Found at i:13810186 original size:25 final size:25
Alignment explanation
Indices: 13810158--13810286 Score: 168
Period size: 25 Copynumber: 5.2 Consensus size: 25
13810148 AAGCTCCTCT
*
13810158 GAGCTGAATAACGGGAAGTTCATGC
1 GAGCTGAATAACGGGAAGCTCATGC
13810183 GAGCTGAATAACGGGAAGCTCATGC
1 GAGCTGAATAACGGGAAGCTCATGC
* * * * *
13810208 GAGTTGTATAATGGAAATCTCATGC
1 GAGCTGAATAACGGGAAGCTCATGC
*
13810233 GAGCTGTATAACGGGAAGCTCATGC
1 GAGCTGAATAACGGGAAGCTCATGC
* * *
13810258 GAGCTAAATATCGGGAAGCTCATGA
1 GAGCTGAATAACGGGAAGCTCATGC
13810283 GAGC
1 GAGC
13810287 GGTGGTGTGT
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 90 1.00
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.21
Consensus pattern (25 bp):
GAGCTGAATAACGGGAAGCTCATGC
Found at i:13810280 original size:50 final size:50
Alignment explanation
Indices: 13810134--13810286 Score: 168
Period size: 50 Copynumber: 3.1 Consensus size: 50
13810124 ATGCTCATAT
* * * *
13810134 GAGCTGTA-AACGAGAAGCTCCT-CTGAGCTGAATAACGGGAAGTTCATGC
1 GAGCTGTATAACGGGAAGCTCATGC-GAGCTGAATATCGGGAAGCTCATGC
* * * * *
13810183 GAGCTGAATAACGGGAAGCTCATGCGAGTTGTATAAT-GGAAATCTCATGC
1 GAGCTGTATAACGGGAAGCTCATGCGAGCTGAAT-ATCGGGAAGCTCATGC
* *
13810233 GAGCTGTATAACGGGAAGCTCATGCGAGCTAAATATCGGGAAGCTCATGA
1 GAGCTGTATAACGGGAAGCTCATGCGAGCTGAATATCGGGAAGCTCATGC
13810283 GAGC
1 GAGC
13810287 GGTGGTGTGT
Statistics
Matches: 84, Mismatches: 16, Indels: 7
0.79 0.15 0.07
Matches are distributed among these distances:
49 9 0.11
50 73 0.87
51 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.21
Consensus pattern (50 bp):
GAGCTGTATAACGGGAAGCTCATGCGAGCTGAATATCGGGAAGCTCATGC
Found at i:13815869 original size:11 final size:10
Alignment explanation
Indices: 13815811--13815902 Score: 59
Period size: 10 Copynumber: 9.1 Consensus size: 10
13815801 ATTTTCACAA
13815811 TTTATAATTAT
1 TTTATAATT-T
*
13815822 CTTT-TAAGTT
1 -TTTATAATTT
*
13815832 TTTGTAATTT
1 TTTATAATTT
13815842 GTTTATAA--T
1 -TTTATAATTT
13815851 TTTA-AATTCT
1 TTTATAATT-T
13815861 TTTATAATTT
1 TTTATAATTT
*
13815871 TTTATACAATTA
1 TTTAT--AATTT
*
13815883 TTT-TGATTT
1 TTTATAATTT
13815892 TTTATAATTT
1 TTTATAATTT
13815902 T
1 T
13815903 ATAATTTATA
Statistics
Matches: 64, Mismatches: 7, Indels: 20
0.70 0.08 0.22
Matches are distributed among these distances:
7 2 0.03
8 4 0.06
9 10 0.16
10 23 0.36
11 15 0.23
12 10 0.16
ACGTcount: A:0.28, C:0.03, G:0.04, T:0.64
Consensus pattern (10 bp):
TTTATAATTT
Found at i:13817260 original size:2 final size:2
Alignment explanation
Indices: 13817253--13817280 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
13817243 TCTTTAACTG
13817253 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13817281 CGATCCGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13817389 original size:4 final size:4
Alignment explanation
Indices: 13817380--13817404 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
13817370 TGGTGTTTTG
13817380 CCAC CCAC CCAC CCAC CCAC CCAC C
1 CCAC CCAC CCAC CCAC CCAC CCAC C
13817405 AAATCTCGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.76, G:0.00, T:0.00
Consensus pattern (4 bp):
CCAC
Found at i:13826772 original size:46 final size:44
Alignment explanation
Indices: 13826705--13826976 Score: 225
Period size: 46 Copynumber: 6.6 Consensus size: 44
13826695 TTTGAGTACT
* *
13826705 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC--TAGCTACACTTA
13826751 TCTGATCAAGTGACAAAGTGAT-A-----AG-T-GCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTAGCTACACTTA
* **
13826787 TCTGATTAAAAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC--TAGCTACACTTA
*
13826833 TCTGATCAAGTGAAAAAGTGATAA---GT-GCTA--T--ACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTAGCTACACTTA
* *
13826869 TCTGATCAAGTGA-AAA---A-AAGTGATAAG-T-GCTATACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGT-AGCTAGCTACACTTA
*
13826907 TCAGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TAGCTACACTTA
*
13826952 TCTGATC-AGGGACAAA-TGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
13826977 ACCATACGTA
Statistics
Matches: 184, Mismatches: 15, Indels: 57
0.72 0.06 0.22
Matches are distributed among these distances:
31 2 0.01
32 1 0.01
34 1 0.01
35 4 0.02
36 49 0.27
37 2 0.01
38 18 0.10
39 3 0.02
40 4 0.02
42 7 0.04
43 17 0.09
44 9 0.05
45 17 0.09
46 50 0.27
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (44 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTAGCTACACTTA
Found at i:13826782 original size:36 final size:36
Alignment explanation
Indices: 13826741--13826933 Score: 206
Period size: 36 Copynumber: 5.0 Consensus size: 36
13826731 GGTAGCTTTA
13826741 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
* **
13826777 GCTACACTTATCTGATTAAAAGACAAAGTGATAAGTGGTAGCTTT
1 GCTACACTTATCTGATCAAGTGACAAAGTGAT-A-----AG---T
*
13826822 AGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 -GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
* *
13826859 GCTATACTTATCTGATCAAGTGAAAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTG--ACAAAGTGATAAGT
* *
13826897 GCTATACTTATCAGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
13826933 G
1 G
13826934 GTAGCTTAGC
Statistics
Matches: 135, Mismatches: 10, Indels: 24
0.80 0.06 0.14
Matches are distributed among these distances:
36 64 0.47
37 2 0.01
38 35 0.26
40 2 0.01
42 2 0.01
45 2 0.01
46 28 0.21
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.28
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
Found at i:13826842 original size:82 final size:82
Alignment explanation
Indices: 13826705--13826877 Score: 301
Period size: 82 Copynumber: 2.1 Consensus size: 82
13826695 TTTGAGTACT
* * *
13826705 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAAAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
13826770 GATAAGTGCTACACTTA
66 GATAAGTGCTACACTTA
*
13826787 TCTGATTAAAAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAAAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
*
13826852 GATAAGTGCTATACTTA
66 GATAAGTGCTACACTTA
13826869 TCTGATCAA
1 TCTGATCAA
13826878 GTGAAAAAAA
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 85 1.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (82 bp):
TCTGATCAAAAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
GATAAGTGCTACACTTA
Found at i:13826906 original size:74 final size:78
Alignment explanation
Indices: 13826705--13826933 Score: 243
Period size: 82 Copynumber: 2.9 Consensus size: 78
13826695 TTTGAGTACT
* * *
13826705 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAAAGACAAA--GATAAGTGATAG--TTAGCTACACTTATCTGATCAAGTGACAAAGT
13826770 GATAAGTGCTACACTTA
62 GATAAGTGCTACACTTA
* * *
13826787 TCTGATTAAAAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAAAGACAAA--GATAAGTGATAG--TTAGCTACACTTATCTGATCAAGTGACAAAGT
*
13826852 GATAAGTGCTATACTTA
62 GATAAGTGCTACACTTA
** * *
13826869 TCTGATCAAGTGA-AAA-A-AAGTGATAAG-T-GCTATACTTATCAGATCAAGTGACAAAGTGAT
1 TCTGATCAAAAGACAAAGATAAGTGAT-AGTTAGCTACACTTATCTGATCAAGTGACAAAGTGAT
13826929 AAGTG
65 AAGTG
13826934 GTAGCTTAGC
Statistics
Matches: 134, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
74 34 0.25
75 1 0.01
77 6 0.04
78 3 0.02
81 3 0.02
82 87 0.65
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.29
Consensus pattern (78 bp):
TCTGATCAAAAGACAAAGATAAGTGATAGTTAGCTACACTTATCTGATCAAGTGACAAAGTGATA
AGTGCTACACTTA
Found at i:13826933 original size:120 final size:115
Alignment explanation
Indices: 13826741--13826976 Score: 346
Period size: 120 Copynumber: 2.0 Consensus size: 115
13826731 GGTAGCTTTA
* * *
13826741 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGCTACACTTATCTGATTAAAAGACAAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACACTTATCAGATCAAAAGACAAAGT
*
13826806 GATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
66 GATAAGTGGTAGC-TTAGCTACACTTATCTGATC-AGGGAAAAA-TGATAAGT
* * **
13826859 GCTATACTTATCTGATCAAGTGAAAAAAAGTGATAAGTGCTATACTTATCAGATCAAGTGACAAA
1 GCTACACTTATCTGATCAAGTG--AAAAAGTGATAAGTGCTACACTTATCAGATCAAAAGACAAA
*
13826924 GTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGGGACAAATGATAAGT
64 GTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGGGAAAAATGATAAGT
13826976 G
1 G
13826977 ACCATACGTA
Statistics
Matches: 107, Mismatches: 9, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
117 9 0.08
118 28 0.26
119 20 0.19
120 50 0.47
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.28
Consensus pattern (115 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACACTTATCAGATCAAAAGACAAAGT
GATAAGTGGTAGCTTAGCTACACTTATCTGATCAGGGAAAAATGATAAGT
Found at i:13833860 original size:14 final size:15
Alignment explanation
Indices: 13833841--13833877 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
13833831 AATTAATTTT
13833841 TTAAAAATAAA-AAA
1 TTAAAAATAAATAAA
13833855 TTAAAAA-AAATTAAA
1 TTAAAAATAAA-TAAA
13833870 TTAAAAAT
1 TTAAAAAT
13833878 CATTAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 3 0.15
14 7 0.35
15 10 0.50
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
TTAAAAATAAATAAA
Found at i:13836633 original size:21 final size:22
Alignment explanation
Indices: 13836609--13836650 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
13836599 TTTTTTTACT
*
13836609 AATTTTATGT-TTTTTAATTTA
1 AATTTTATATGTTTTTAATTTA
13836630 AATTTTATATGTTTTTAATTT
1 AATTTTATATGTTTTTAATTT
13836651 TTAATTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (22 bp):
AATTTTATATGTTTTTAATTTA
Found at i:13836656 original size:23 final size:21
Alignment explanation
Indices: 13836608--13836657 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
13836598 TTTTTTTTAC
*
13836608 TAATTTTATGTTTTTTAATTT
1 TAATTTTATATTTTTTAATTT
*
13836629 AAATTTTATATGTTTTTAATTTT
1 TAATTTTATAT-TTTTTAA-TTT
13836652 TAATTT
1 TAATTT
13836658 AAACTTTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 9 0.38
22 7 0.29
23 8 0.33
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (21 bp):
TAATTTTATATTTTTTAATTT
Found at i:13836679 original size:29 final size:29
Alignment explanation
Indices: 13836619--13836680 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
13836609 AATTTTATGT
* * **
13836619 TTTTTAATTTAAATTTTATATGTTTTTAA
1 TTTTTAATTTAAACTTTATACGGATTTAA
*
13836648 TTTTTAATTTAAACTTTATACGGATTTCA
1 TTTTTAATTTAAACTTTATACGGATTTAA
13836677 TTTT
1 TTTT
13836681 ATTTTTTGGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.61
Consensus pattern (29 bp):
TTTTTAATTTAAACTTTATACGGATTTAA
Found at i:13838424 original size:28 final size:28
Alignment explanation
Indices: 13838376--13838433 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
13838366 AAAAATGATG
*
13838376 AAAAAATAAAAATTAATTAAAGT-TATA
1 AAAAAATAAAAATTAATTAAAATATATA
*
13838403 AAAAACATAAAATTTTAA-TAAAATATATA
1 AAAAA-ATAAAA-ATTAATTAAAATATATA
13838432 AA
1 AA
13838434 TTATTAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
27 5 0.19
28 11 0.42
29 10 0.38
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (28 bp):
AAAAAATAAAAATTAATTAAAATATATA
Found at i:13838473 original size:22 final size:21
Alignment explanation
Indices: 13838431--13838483 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 21
13838421 TAAAATATAT
13838431 AAATTATTAAAAATTAGAAAA
1 AAATTATTAAAAATTAGAAAA
13838452 CAAATTA-TAAAAATCGTA-AAAA
1 -AAATTATTAAAAAT--TAGAAAA
13838474 AAA-TATTAAA
1 AAATTATTAAA
13838484 TATATAAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
20 2 0.07
21 14 0.50
22 10 0.36
23 2 0.07
ACGTcount: A:0.66, C:0.04, G:0.04, T:0.26
Consensus pattern (21 bp):
AAATTATTAAAAATTAGAAAA
Found at i:13838628 original size:29 final size:29
Alignment explanation
Indices: 13838596--13838657 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
13838586 ATTTATTTAC
* *
13838596 ATTTTTATATTTTTCTTATAA-CTTTATAA
1 ATTTTTATAATTTT-TTACAATCTTTATAA
*
13838625 ATTTTTATAATTTTTTACAATTTTTATAA
1 ATTTTTATAATTTTTTACAATCTTTATAA
13838654 ATTT
1 ATTT
13838658 ATTCTAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 5 0.17
29 24 0.83
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (29 bp):
ATTTTTATAATTTTTTACAATCTTTATAA
Found at i:13838633 original size:10 final size:10
Alignment explanation
Indices: 13838618--13838717 Score: 66
Period size: 10 Copynumber: 10.2 Consensus size: 10
13838608 TTCTTATAAC
13838618 TTTATAAATT
1 TTTATAAATT
13838628 TTTAT-AATT
1 TTTATAAATT
13838637 TTT-TACAATT
1 TTTATA-AATT
13838647 TTTATAAATT
1 TTTATAAATT
*
13838657 TATTCTAAATT
1 T-TTATAAATT
* *
13838668 TTAAT-TATT
1 TTTATAAATT
* *
13838677 TTAATATATT
1 TTTATAAATT
*
13838687 TTTATTAAAAT
1 TTTA-TAAATT
*
13838698 TTAAT-AA-T
1 TTTATAAATT
*
13838706 TTTATAACTT
1 TTTATAAATT
13838716 TT
1 TT
13838718 ATTTATTATA
Statistics
Matches: 72, Mismatches: 10, Indels: 16
0.73 0.10 0.16
Matches are distributed among these distances:
8 6 0.08
9 18 0.25
10 30 0.42
11 18 0.25
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (10 bp):
TTTATAAATT
Found at i:13838638 original size:9 final size:9
Alignment explanation
Indices: 13838596--13838733 Score: 59
Period size: 9 Copynumber: 14.7 Consensus size: 9
13838586 ATTTATTTAC
13838596 ATTTTTATA
1 ATTTTTATA
*
13838605 TTTTTCTTATA
1 -ATTT-TTATA
*
13838616 A-CTTTATAA
1 ATTTTTAT-A
13838625 ATTTTTATA
1 ATTTTTATA
*
13838634 ATTTTTTACA
1 A-TTTTTATA
13838644 ATTTTTATAA
1 ATTTTTAT-A
*
13838654 ATTTATTCTAA
1 ATTT-TTAT-A
* *
13838665 ATTTTAATT
1 ATTTTTATA
*
13838674 ATTTTAATA
1 ATTTTTATA
13838683 TATTTTTATTAA
1 -ATTTTTA-T-A
* *
13838695 AATTTAATA
1 ATTTTTATA
13838704 A-TTTTATA
1 ATTTTTATA
*
13838712 ACTTTTAT-
1 ATTTTTATA
*
13838720 -TTATTATA
1 ATTTTTATA
13838728 ATTTTT
1 ATTTTT
13838734 GTGTCACATG
Statistics
Matches: 98, Mismatches: 18, Indels: 25
0.70 0.13 0.18
Matches are distributed among these distances:
7 5 0.05
8 11 0.11
9 31 0.32
10 30 0.31
11 20 0.20
12 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (9 bp):
ATTTTTATA
Found at i:13838641 original size:20 final size:20
Alignment explanation
Indices: 13838618--13838691 Score: 62
Period size: 19 Copynumber: 3.8 Consensus size: 20
13838608 TTCTTATAAC
13838618 TTTATAAATTTTTATAATTT
1 TTTATAAATTTTTATAATTT
*
13838638 TTTA-CAATTTTTATAAATTT
1 TTTATAAATTTTTAT-AATTT
* * * *
13838658 ATTCTAAATTTTAATTA-TT
1 TTTATAAATTTTTATAATTT
* *
13838677 TTAATATATTTTTAT
1 TTTATAAATTTTTAT
13838692 TAAAATTTAA
Statistics
Matches: 41, Mismatches: 11, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
19 21 0.51
20 12 0.29
21 8 0.20
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTATAAATTTTTATAATTT
Found at i:13838679 original size:48 final size:48
Alignment explanation
Indices: 13838579--13838689 Score: 111
Period size: 48 Copynumber: 2.3 Consensus size: 48
13838569 TTTTTTAGGA
** * *
13838579 ATTTTAT-ATTTATTTACATTTTTATATTTTTCTTATAACTTTATAAAT
1 ATTTTATAATTT-TTTACATTTTTATAAATTTATTATAAATTTATAAAT
* *
13838627 -TTTTATAATTTTTTACAATTTTTATAAATTTATTCTAAATTT-TAATT
1 ATTTTATAATTTTTTAC-ATTTTTATAAATTTATTATAAATTTATAAAT
13838674 ATTTTAATATATTTTT
1 ATTTT-ATA-ATTTTT
13838690 ATTAAAATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
47 15 0.29
48 28 0.54
49 3 0.06
50 6 0.12
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (48 bp):
ATTTTATAATTTTTTACATTTTTATAAATTTATTATAAATTTATAAAT
Found at i:13839266 original size:18 final size:18
Alignment explanation
Indices: 13839225--13839270 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
13839215 TTTTAGTCTC
13839225 AAATTTTATAAATTTATGA
1 AAATTTT-TAAATTTATGA
* *
13839244 AAATTTTTAATTTTATTA
1 AAATTTTTAAATTTATGA
*
13839262 TAATTTTTA
1 AAATTTTTA
13839271 TTAATAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 17 0.71
19 7 0.29
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (18 bp):
AAATTTTTAAATTTATGA
Found at i:13844754 original size:23 final size:23
Alignment explanation
Indices: 13844711--13844754 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
13844701 TTAAAAGTCT
* *
13844711 ATATGTTAAAAAGATCTTTAAGA
1 ATATGTGAAAAAGATCATTAAGA
13844734 ATATGTGAAAAAG-TCAATTAA
1 ATATGTGAAAAAGATC-ATTAA
13844755 ATGTCTACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 16 0.89
ACGTcount: A:0.50, C:0.05, G:0.14, T:0.32
Consensus pattern (23 bp):
ATATGTGAAAAAGATCATTAAGA
Found at i:13844893 original size:9 final size:9
Alignment explanation
Indices: 13844881--13845109 Score: 74
Period size: 9 Copynumber: 23.8 Consensus size: 9
13844871 AAAAATCAGA
13844881 AAAAATTAT
1 AAAAATTAT
*
13844890 AAAAATATCT
1 AAAAAT-TAT
*
13844900 AAAAGGTTTAT
1 AAAA--ATTAT
*
13844911 GAAAATTAT
1 AAAAATTAT
*
13844920 AAAAAGTACT
1 AAAAATTA-T
13844930 AAAAACTT-T
1 AAAAA-TTAT
*
13844939 AAATATTAT
1 AAAAATTAT
13844948 CAAAAATCTA-
1 -AAAAAT-TAT
*
13844958 ATAAATCTA-
1 AAAAAT-TAT
* *
13844967 ATAAATTTT
1 AAAAATTAT
13844976 AATAAATTAT
1 AA-AAATTAT
*
13844986 -AAAATTAAC
1 AAAAATT-AT
*
13844995 AATAAATATTT
1 AA-AAAT-TAT
*
13845006 AAAATTTTAT
1 AAAA-ATTAT
*
13845016 AAAAACGTAT
1 AAAAA-TTAT
*
13845026 AAAAATTCTT
1 AAAAATT-AT
13845036 AAAAAATTTAT
1 -AAAAA-TTAT
*
13845047 AAAAAATCAT
1 -AAAAATTAT
13845057 AAAAATTATT
1 AAAAATTA-T
13845067 AAAAA-TAT
1 AAAAATTAT
*
13845075 -TAAATTGAT
1 AAAAATT-AT
* *
13845084 ATAAACTTAA
1 A-AAAATTAT
13845094 AAAAATTAT
1 AAAAATTAT
13845103 AAAAATT
1 AAAAATT
13845110 TGAATTGGAC
Statistics
Matches: 164, Mismatches: 32, Indels: 48
0.67 0.13 0.20
Matches are distributed among these distances:
7 3 0.02
8 10 0.06
9 64 0.39
10 52 0.32
11 31 0.19
12 4 0.02
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:13845031 original size:21 final size:21
Alignment explanation
Indices: 13845006--13845061 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
13844996 ATAAATATTT
13845006 AAAATT-TTATAAAAACGTATA
1 AAAATTCTTA-AAAAACGTATA
**
13845027 AAAATTCTTAAAAAATTTATA
1 AAAATTCTTAAAAAACGTATA
* *
13845048 AAAAATCATAAAAA
1 AAAATTCTTAAAAA
13845062 TTATTAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 27 0.90
22 3 0.10
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.30
Consensus pattern (21 bp):
AAAATTCTTAAAAAACGTATA
Found at i:13845049 original size:31 final size:31
Alignment explanation
Indices: 13845001--13845071 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
13844991 TAACAATAAA
* * *
13845001 TATTTAAAATTTTATAAAAACGT-ATAAAAAT
1 TATTAAAAAATTTATAAAAA-ATCATAAAAAT
*
13845032 TCTTAAAAAATTTATAAAAAATCATAAAAAT
1 TATTAAAAAATTTATAAAAAATCATAAAAAT
13845063 TATTAAAAA
1 TATTAAAAA
13845072 TATTAAATTG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 1 0.03
31 33 0.97
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.35
Consensus pattern (31 bp):
TATTAAAAAATTTATAAAAAATCATAAAAAT
Found at i:13845900 original size:9 final size:9
Alignment explanation
Indices: 13845628--13845874 Score: 60
Period size: 10 Copynumber: 25.7 Consensus size: 9
13845618 TTTTCATGAT
13845628 ATTTTTAATA
1 ATTTTT-ATA
*
13845638 ATTATTATA
1 ATTTTTATA
*
13845647 ACTTTATATCA
1 A-TTTTTAT-A
*
13845658 ATTTTAAT-
1 ATTTTTATA
13845666 ATTTTTATGA
1 ATTTTTAT-A
*
13845676 TTTTTTATA
1 ATTTTTATA
* * *
13845685 GTTGTTAAGA
1 ATT-TTTATA
*
13845695 ATTTTTTTA
1 ATTTTTATA
*
13845704 CTTTTT-T-
1 ATTTTTATA
*
13845711 A-TTTTAAA
1 ATTTTTATA
13845719 TATGTTTTATTA
1 -AT-TTTTA-TA
*
13845731 A-TTTCATA
1 ATTTTTATA
*
13845739 ATTTATTAAA
1 ATTT-TTATA
*
13845749 ATTTGTTA-G
1 ATTT-TTATA
13845758 ATTTTTAATA
1 ATTTTT-ATA
*
13845768 ATATTTATA
1 ATTTTTATA
13845777 AGTTTTTATTAA
1 A-TTTTTA-T-A
13845789 ATTTTTTTTATA
1 A---TTTTTATA
*
13845801 ATTTTTACA
1 ATTTTTATA
*
13845810 AGTTTATATCA
1 A-TTTTTAT-A
* *
13845821 ATTTTAATT
1 ATTTTTATA
13845830 ATTTTT-TAA
1 ATTTTTAT-A
13845839 ATATTTTA-A
1 AT-TTTTATA
13845848 ATTTTTATAA
1 ATTTTTAT-A
13845858 TGATTTTTATA
1 --ATTTTTATA
13845869 ATTTTT
1 ATTTTT
13845875 TTTTATTTTT
Statistics
Matches: 173, Mismatches: 35, Indels: 59
0.65 0.13 0.22
Matches are distributed among these distances:
6 4 0.02
8 19 0.11
9 55 0.32
10 63 0.36
11 12 0.07
12 13 0.08
13 1 0.01
14 6 0.03
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (9 bp):
ATTTTTATA
Found at i:13870562 original size:26 final size:25
Alignment explanation
Indices: 13870531--13870603 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 25
13870521 ACGAATTTTC
13870531 TCAAAATTTTACTAGGGGTAAAATTG
1 TCAAAATTTTACTA-GGGTAAAATTG
*
13870557 TCAAAATTTTA-TCAAGGTAAAATTG
1 TCAAAATTTTACT-AGGGTAAAATTG
*
13870582 TCAAAAAATTTACTAGGGTAAA
1 TC-AAAATTTTACTAGGGTAAA
13870604 CTTGGGATGA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
25 13 0.32
26 27 0.66
27 1 0.02
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (25 bp):
TCAAAATTTTACTAGGGTAAAATTG
Found at i:13872204 original size:14 final size:14
Alignment explanation
Indices: 13872187--13872232 Score: 83
Period size: 14 Copynumber: 3.3 Consensus size: 14
13872177 TAAAAAAATG
13872187 TTATTAAATTATTA
1 TTATTAAATTATTA
*
13872201 TTATTAAATTAGTA
1 TTATTAAATTATTA
13872215 TTATTAAATTATTA
1 TTATTAAATTATTA
13872229 TTAT
1 TTAT
13872233 ATTTTAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (14 bp):
TTATTAAATTATTA
Found at i:13873571 original size:23 final size:22
Alignment explanation
Indices: 13873544--13873628 Score: 95
Period size: 21 Copynumber: 4.0 Consensus size: 22
13873534 GGCTTTGCCG
* *
13873544 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTCATGTGTCGT-T
*
13873567 ATCAGGCACCTCGTGTGTCG-T
1 ATCAGGCACCTCATGTGTCGTT
*
13873588 ATCAGGCACCTCGTGTGTCGTT
1 ATCAGGCACCTCATGTGTCGTT
*
13873610 -TCAGGCA-CTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
13873629 ATACTGATCA
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
20 10 0.18
21 28 0.50
22 1 0.02
23 17 0.30
ACGTcount: A:0.16, C:0.24, G:0.26, T:0.34
Consensus pattern (22 bp):
ATCAGGCACCTCATGTGTCGTT
Found at i:13873590 original size:21 final size:21
Alignment explanation
Indices: 13873557--13873630 Score: 96
Period size: 21 Copynumber: 3.5 Consensus size: 21
13873547 AGGCACTTTA
13873557 TGTGTCGTATATCAGGCACCTCG
1 TGTGTCG--TATCAGGCACCTCG
13873580 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* **
13873601 TGTGTCGTTTCAGGCA-CTTA
1 TGTGTCGTATCAGGCACCTCG
13873621 TGTGTCGTAT
1 TGTGTCGTAT
13873631 ACTGATCAGG
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
20 11 0.23
21 29 0.62
23 7 0.15
ACGTcount: A:0.15, C:0.23, G:0.27, T:0.35
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:13877043 original size:42 final size:42
Alignment explanation
Indices: 13876985--13877074 Score: 155
Period size: 42 Copynumber: 2.2 Consensus size: 42
13876975 CATCAAGTGT
*
13876985 TTTC-TTCTTGCCTAAAATTGATTGAAGGAGATGACAATCTC
1 TTTCTTTCTTGCCTAAAATTGATTGAAAGAGATGACAATCTC
*
13877026 TTTCTTTCTTTCCTAAAATTGATTGAAAGAGATGACAATCTC
1 TTTCTTTCTTGCCTAAAATTGATTGAAAGAGATGACAATCTC
13877068 TTTCTTT
1 TTTCTTT
13877075 TCACTAAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 4 0.09
42 42 0.91
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (42 bp):
TTTCTTTCTTGCCTAAAATTGATTGAAAGAGATGACAATCTC
Found at i:13906301 original size:6 final size:7
Alignment explanation
Indices: 13906282--13906310 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
13906272 ATCACTCAAG
13906282 ATAAAAA
1 ATAAAAA
13906289 ATAAAAA
1 ATAAAAA
13906296 ATAAAAA
1 ATAAAAA
13906303 ATAAAAA
1 ATAAAAA
13906310 A
1 A
13906311 AGAAGCATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
ATAAAAA
Found at i:13908032 original size:24 final size:25
Alignment explanation
Indices: 13907971--13908032 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 25
13907961 AAAATTCATT
*
13907971 AATATTATGATATATGAAATATATA
1 AATATTATAATATATGAAATATATA
* *
13907996 AAT-TTA-AATTATATTAAGTA-ATA
1 AATATTATAA-TATATGAAATATATA
13908019 AATATTATAATATA
1 AATATTATAATATA
13908033 AGTAATACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
23 7 0.23
24 19 0.61
25 5 0.16
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (25 bp):
AATATTATAATATATGAAATATATA
Found at i:13909041 original size:18 final size:18
Alignment explanation
Indices: 13909018--13909067 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
13909008 TTATAGTCCA
13909018 CCTCCACCACCTTCTTGG
1 CCTCCACCACCTTCTTGG
13909036 CCTCCACCACCTTCTTGG
1 CCTCCACCACCTTCTTGG
*
13909054 CATCCACCACCTTC
1 CCTCCACCACCTTC
13909068 GCCTCCACCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.14, C:0.52, G:0.08, T:0.26
Consensus pattern (18 bp):
CCTCCACCACCTTCTTGG
Found at i:13909074 original size:15 final size:16
Alignment explanation
Indices: 13909018--13909076 Score: 66
Period size: 18 Copynumber: 3.5 Consensus size: 16
13909008 TTATAGTCCA
13909018 CCTCCACCACCTTCTTGG
1 CCTCCACCACCTTC-T-G
13909036 CCTCCACCACCTTCTTGG
1 CCTCCACCACCTTC-T-G
*
13909054 CATCCACCACCTTC-G
1 CCTCCACCACCTTCTG
13909069 CCTCCACC
1 CCTCCACC
13909077 TGTTAGACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
15 8 0.21
18 31 0.79
ACGTcount: A:0.14, C:0.54, G:0.08, T:0.24
Consensus pattern (16 bp):
CCTCCACCACCTTCTG
Found at i:13909598 original size:135 final size:135
Alignment explanation
Indices: 13909356--13909628 Score: 537
Period size: 135 Copynumber: 2.0 Consensus size: 135
13909346 CACGTCCAAG
13909356 ACCGCTAAGGCAGCCAAGTCCAGCTTTAGCAGCACGACCTTTCTTAACATGTACATCACAATCTC
1 ACCGCTAAGGCAGCCAAGTCCAGCTTTAGCAGCACGACCTTTCTTAACATGTACATCACAATCTC
13909421 AAGGGATGGCTGAATCATCAGTGGCACTGGAACTAAACCCTTCTGGTTCTGCGACGCCTTCACAT
66 AAGGGATGGCTGAATCATCAGTGGCACTGGAACTAAACCCTTCTGGTTCTGCGACGCCTTCACAT
13909486 GCAAA
131 GCAAA
*
13909491 ACCGCTAAGGCAGCCAAGTCCAGCTTTAGCAGCACGACCTTTCTTAACATGTATATCACAATCTC
1 ACCGCTAAGGCAGCCAAGTCCAGCTTTAGCAGCACGACCTTTCTTAACATGTACATCACAATCTC
13909556 AAGGGATGGCTGAATCATCAGTGGCACTGGAACTAAACCCTTCTGGTTCTGCGACGCCTTCACAT
66 AAGGGATGGCTGAATCATCAGTGGCACTGGAACTAAACCCTTCTGGTTCTGCGACGCCTTCACAT
13909621 GCAAA
131 GCAAA
13909626 ACC
1 ACC
13909629 TGGTTTGACT
Statistics
Matches: 137, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
135 137 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (135 bp):
ACCGCTAAGGCAGCCAAGTCCAGCTTTAGCAGCACGACCTTTCTTAACATGTACATCACAATCTC
AAGGGATGGCTGAATCATCAGTGGCACTGGAACTAAACCCTTCTGGTTCTGCGACGCCTTCACAT
GCAAA
Found at i:13910915 original size:20 final size:21
Alignment explanation
Indices: 13910880--13910919 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
13910870 GTGTTTTATT
13910880 TAATTTATAAAAATAAAAATC
1 TAATTTATAAAAATAAAAATC
*
13910901 TAATTT-TATAAATAAAAAT
1 TAATTTATAAAAATAAAAAT
13910920 TCATTGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (21 bp):
TAATTTATAAAAATAAAAATC
Found at i:13913315 original size:2 final size:2
Alignment explanation
Indices: 13913308--13913401 Score: 188
Period size: 2 Copynumber: 47.0 Consensus size: 2
13913298 AATTCAAATC
13913308 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
13913350 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
13913392 CA CA CA CA CA
1 CA CA CA CA CA
13913402 TATATATTCA
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 92 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:13913534 original size:48 final size:48
Alignment explanation
Indices: 13913469--13913642 Score: 195
Period size: 48 Copynumber: 3.6 Consensus size: 48
13913459 AAAACAGATT
* * * * * *
13913469 TCTCAGTGGCCTACACACAGTCCGTACCACCTTTGTGTAATAACAGAC
1 TCTCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATAATAACAGAA
**
13913517 TCTCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCTTAACAGAA
1 TCTCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATAATAACAGAA
* * ** *
13913565 TATTGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCTTAATAGAA
1 TCTCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATAATAACAGAA
* * * *
13913613 TATTGGTGACCTGCATACAGTCCGTGCCAC
1 TCTCGGTGGCCTGCACACAGTCCGTGCCAC
13913643 ATATGCGACC
Statistics
Matches: 113, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 113 1.00
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (48 bp):
TCTCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATAATAACAGAA
Found at i:13922450 original size:87 final size:87
Alignment explanation
Indices: 13922299--13922575 Score: 527
Period size: 87 Copynumber: 3.2 Consensus size: 87
13922289 ATACTCGATC
* *
13922299 ACCTTCTCGGTCTCCACCACAAAGTCGTCCACCTATTAGACGTACTCCTTCATATCCACCGCCTC
1 ACCTCCTCGGCCTCCACCACAAAGTCGTCCACCTATTAGACGTACTCCTTCATATCCACCGCCTC
13922364 GTACATTTCCTCCCTCATGTCA
66 GTACATTTCCTCCCTCATGTCA
13922386 ACCTCCTCGGCCTCCACCACAAAGTCGTCCACCTATTAGACGTACTCCTTCATATCCACCGCCTC
1 ACCTCCTCGGCCTCCACCACAAAGTCGTCCACCTATTAGACGTACTCCTTCATATCCACCGCCTC
*
13922451 GTACATTTCCTCCCTCAAGTCA
66 GTACATTTCCTCCCTCATGTCA
13922473 ACCTCCTCGGCCTCCACCACAAAGTCGTCCACCTATTAGACGTACTCCTTCATATCCACCGCCTC
1 ACCTCCTCGGCCTCCACCACAAAGTCGTCCACCTATTAGACGTACTCCTTCATATCCACCGCCTC
13922538 GTACATTTCCTCCCTCATGTCA
66 GTACATTTCCTCCCTCATGTCA
13922560 ACCTCCTCGGCCTCCA
1 ACCTCCTCGGCCTCCA
13922576 ACTCCAACGG
Statistics
Matches: 186, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 186 1.00
ACGTcount: A:0.21, C:0.43, G:0.10, T:0.26
Consensus pattern (87 bp):
ACCTCCTCGGCCTCCACCACAAAGTCGTCCACCTATTAGACGTACTCCTTCATATCCACCGCCTC
GTACATTTCCTCCCTCATGTCA
Found at i:13934100 original size:16 final size:17
Alignment explanation
Indices: 13934068--13934105 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
13934058 CATTGGCTGC
*
13934068 TTCTTTCTTTTTCTTTT
1 TTCTTTCTTTCTCTTTT
13934085 TTCTTT-TTTCTCTTTT
1 TTCTTTCTTTCTCTTTT
13934101 TTCTT
1 TTCTT
13934106 GCAAAGAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (17 bp):
TTCTTTCTTTCTCTTTT
Found at i:13935037 original size:6 final size:6
Alignment explanation
Indices: 13935026--13935238 Score: 127
Period size: 6 Copynumber: 36.8 Consensus size: 6
13935016 CTCTGCAAGA
* * * *
13935026 AGAGAG AGAGAG AGAGAG AGGGAG AGAGAG GGAGAG AGGGAG AGAGGG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * * * * * * * * *
13935074 AGGGAC A-AG-G AGCGGG AGGGAC AGGGAG GGAGAG GGAGAG AGAGGG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * * * * * *
13935120 AGAGAG GGAAAG CGAGAG AGGGAG AGAGAG AGGGAG AGGGAG GGAGAG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * * * * *
13935168 CGAGAG AGAGGG GGAGAG AG-GA- AG-GGG A-AGGG AGAGTG AG-GA-
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
13935210 AGAGAG AGAGAG AGAGAG AGAGAG AGAGA
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGA
13935239 AGCAGCGAAT
Statistics
Matches: 159, Mismatches: 41, Indels: 14
0.74 0.19 0.07
Matches are distributed among these distances:
4 6 0.04
5 12 0.08
6 141 0.89
ACGTcount: A:0.39, C:0.02, G:0.58, T:0.00
Consensus pattern (6 bp):
AGAGAG
Found at i:13935041 original size:10 final size:10
Alignment explanation
Indices: 13935026--13935238 Score: 127
Period size: 10 Copynumber: 22.1 Consensus size: 10
13935016 CTCTGCAAGA
13935026 AGAGAGAGAG
1 AGAGAGAGAG
13935036 AGAGAGAGAG
1 AGAGAGAGAG
*
13935046 GGAGAGAGAG
1 AGAGAGAGAG
* *
13935056 GGAGAGAGGG
1 AGAGAGAGAG
*
13935066 AGAGAGGGAG
1 AGAGAGAGAG
* *
13935076 GGACA-AG-G
1 AGAGAGAGAG
* * *
13935084 AGCGGGAGGG
1 AGAGAGAGAG
* * *
13935094 ACAGGGAGGG
1 AGAGAGAGAG
*
13935104 AGAGGGAGAG
1 AGAGAGAGAG
*
13935114 AGAGGGAGAG
1 AGAGAGAGAG
* * *
13935124 AGGGAAAGCG
1 AGAGAGAGAG
*
13935134 AGAGAGGGAG
1 AGAGAGAGAG
*
13935144 AGAGAGAGGG
1 AGAGAGAGAG
* *
13935154 AGAGGGAGGG
1 AGAGAGAGAG
*
13935164 AGAGCGAGAG
1 AGAGAGAGAG
* *
13935174 AGAGGGGGAG
1 AGAGAGAGAG
13935184 AGAG-GA-AG
1 AGAGAGAGAG
* *
13935192 -GGGA-AGGG
1 AGAGAGAGAG
*
13935200 AGAGTGAG-G
1 AGAGAGAGAG
13935209 A-AGAGAGAG
1 AGAGAGAGAG
13935218 AGAGAGAGAG
1 AGAGAGAGAG
13935228 AGAGAGAGAG
1 AGAGAGAGAG
13935238 A
1 A
13935239 AGCAGCGAAT
Statistics
Matches: 158, Mismatches: 37, Indels: 16
0.75 0.18 0.08
Matches are distributed among these distances:
7 3 0.02
8 10 0.06
9 10 0.06
10 135 0.85
ACGTcount: A:0.39, C:0.02, G:0.58, T:0.00
Consensus pattern (10 bp):
AGAGAGAGAG
Found at i:13935050 original size:16 final size:16
Alignment explanation
Indices: 13935026--13935238 Score: 158
Period size: 16 Copynumber: 13.8 Consensus size: 16
13935016 CTCTGCAAGA
*
13935026 AGAGAGAGAGAGAGAG
1 AGAGAGAGAGAGAGGG
*
13935042 AGAGGGAGAGAGAGGG
1 AGAGAGAGAGAGAGGG
*
13935058 AGAGAGGGAGAGAGGG
1 AGAGAGAGAGAGAGGG
* *
13935074 AGGGACA-AG-GAGCGG
1 AGAGAGAGAGAGAG-GG
* * *
13935089 -GAGGGACAGGGAGGG
1 AGAGAGAGAGAGAGGG
*
13935104 AGAGGGAGAGAGAGGG
1 AGAGAGAGAGAGAGGG
* *
13935120 AGAGAG-G-GAAAGCG
1 AGAGAGAGAGAGAGGG
*
13935134 AGAGAG-G-GAGAGAG
1 AGAGAGAGAGAGAGGG
* *
13935148 AGAGGGAGAGGGAGGG
1 AGAGAGAGAGAGAGGG
*
13935164 AGAGCGAGAGAGAGGG
1 AGAGAGAGAGAGAGGG
*
13935180 GGAGAGAG-GA-AGGG
1 AGAGAGAGAGAGAGGG
* * *
13935194 -GAAGGGAGAGTGAGGA
1 AG-AGAGAGAGAGAGGG
*
13935210 AGAGAGAGAGAGAGAG
1 AGAGAGAGAGAGAGGG
13935226 AGAGAGAGAGAGA
1 AGAGAGAGAGAGA
13935239 AGCAGCGAAT
Statistics
Matches: 156, Mismatches: 31, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
13 1 0.01
14 37 0.24
15 13 0.08
16 104 0.67
17 1 0.01
ACGTcount: A:0.39, C:0.02, G:0.58, T:0.00
Consensus pattern (16 bp):
AGAGAGAGAGAGAGGG
Found at i:13937704 original size:36 final size:35
Alignment explanation
Indices: 13937612--13937704 Score: 98
Period size: 36 Copynumber: 2.6 Consensus size: 35
13937602 ACTCTCTGTT
* **
13937612 TTGGTGTGTTTTGGTTGGACTAGCTCTTTGGAGCCA
1 TTGGTGTGTTTTGGTTGGATTAGCTCTTT-GAAACA
* **
13937648 TTGATGTGTTTTGGAAGGATTAGCTCTTAT-AAACA
1 TTGGTGTGTTTTGGTTGGATTAGCTCTT-TGAAACA
13937683 TCTGGTGTGTTTTGGTTGGATT
1 T-TGGTGTGTTTTGGTTGGATT
13937705 TTCGATGTAC
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
35 4 0.09
36 41 0.89
37 1 0.02
ACGTcount: A:0.16, C:0.10, G:0.30, T:0.44
Consensus pattern (35 bp):
TTGGTGTGTTTTGGTTGGATTAGCTCTTTGAAACA
Found at i:13938608 original size:12 final size:12
Alignment explanation
Indices: 13938591--13938620 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
13938581 TCAGTGAGTT
13938591 ACACAGCCTGGC
1 ACACAGCCTGGC
*
13938603 ACACAGCTTGGC
1 ACACAGCCTGGC
13938615 ACACAG
1 ACACAG
13938621 ACATGTGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.37, G:0.23, T:0.10
Consensus pattern (12 bp):
ACACAGCCTGGC
Found at i:13940472 original size:24 final size:24
Alignment explanation
Indices: 13940422--13940473 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
13940412 AGTCAATGTC
* *
13940422 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
* *
13940446 AAATATGTTATACTAATAAATATT
1 AAATATATTATACTAATAAATACT
13940470 AAAT
1 AAAT
13940474 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:13941727 original size:23 final size:23
Alignment explanation
Indices: 13941697--13941763 Score: 82
Period size: 23 Copynumber: 2.8 Consensus size: 23
13941687 GTTTTTTTTA
*
13941697 TTAAGTTTTGCATCAAGTTCTTT
1 TTAAGTTTTCCATCAAGTTCTTT
*
13941720 TTAAGTTTTTCATCAAG-TCTTT
1 TTAAGTTTTCCATCAAGTTCTTT
13941742 TCATAAAGTTTTCCATCAAGTT
1 T--T-AAGTTTTCCATCAAGTT
13941764 TTTAATCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
22 6 0.16
23 16 0.42
24 1 0.03
25 14 0.37
26 1 0.03
ACGTcount: A:0.25, C:0.15, G:0.10, T:0.49
Consensus pattern (23 bp):
TTAAGTTTTCCATCAAGTTCTTT
Found at i:13941744 original size:13 final size:12
Alignment explanation
Indices: 13941648--13941771 Score: 81
Period size: 12 Copynumber: 9.8 Consensus size: 12
13941638 TCTTCAAGTA
13941648 TTTTTCATCAAG
1 TTTTTCATCAAG
*
13941660 TTCTTTTATCAAG
1 TT-TTTCATCAAG
*
13941673 TTTTTAATTACCAAG
1 TTTTTCA-T--CAAG
* *
13941688 TTTTTTTTATTAAG
1 --TTTTTCATCAAG
*
13941702 TTTTGCATCAAG
1 TTTTTCATCAAG
*
13941714 TTCTTT--TTAAG
1 TT-TTTCATCAAG
13941725 TTTTTCATCAAG
1 TTTTTCATCAAG
*
13941737 TCTTTTCATAAAG
1 T-TTTTCATCAAG
*
13941750 TTTTCCATCAAG
1 TTTTTCATCAAG
*
13941762 TTTTTAATCA
1 TTTTTCATCA
13941772 TTATGTTTTT
Statistics
Matches: 87, Mismatches: 15, Indels: 20
0.71 0.12 0.16
Matches are distributed among these distances:
10 3 0.03
11 6 0.07
12 39 0.45
13 25 0.29
14 3 0.03
15 4 0.05
16 1 0.01
17 6 0.07
ACGTcount: A:0.26, C:0.14, G:0.08, T:0.52
Consensus pattern (12 bp):
TTTTTCATCAAG
Found at i:13946185 original size:17 final size:19
Alignment explanation
Indices: 13946150--13946187 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
13946140 AAATTCCAAA
*
13946150 AATAACAAAGTCCATTTAC
1 AATAACAAAGTCCAATTAC
13946169 AATAA-AAA-TCCAATTAC
1 AATAACAAAGTCCAATTAC
13946186 AA
1 AA
13946188 AGAAATAGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 10 0.56
18 3 0.17
19 5 0.28
ACGTcount: A:0.55, C:0.18, G:0.03, T:0.24
Consensus pattern (19 bp):
AATAACAAAGTCCAATTAC
Found at i:13950032 original size:43 final size:43
Alignment explanation
Indices: 13949967--13950151 Score: 203
Period size: 43 Copynumber: 4.3 Consensus size: 43
13949957 TTTTAGAAAT
* *
13949967 AAACGCCGCTAAAGACCGAGACCTTTAGCGGCACTTTTACAAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCACTTTTCCAAC
* * * *
13950010 AAGCGTCGCTAAAGACCAAGACCTTTAGCGACGCTTTTCCAAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCACTTTTCCAAC
* * * * **
13950053 AAATGCCGCTAAAGACCACGACCTTTAACTGCGTTTTTTCC-AC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGC-ACTTTTCCAAC
* * *
13950096 AAATGCCGCTAAAGACCATGA-CTTATAGCGGCACTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTT-TAGCGGCACTTTTCCAAC
13950139 AAACGCCGCTAAA
1 AAACGCCGCTAAA
13950152 AAAGCATTAC
Statistics
Matches: 118, Mismatches: 21, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
42 9 0.08
43 103 0.87
44 6 0.05
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGGCACTTTTCCAAC
Found at i:13950213 original size:41 final size:42
Alignment explanation
Indices: 13950139--13950249 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 42
13950129 CTTTTCCCAC
* * * *
13950139 AAACGCCGCTAAAAAAGCATTACCTTTAGCGACGCTTTTAGC-A
1 AAACACCGCT-AAAAA-CATAACCTTTACCGACGCTTCTAGCAA
* * *
13950182 CAACACCGCTAAAGA-ATAAACCTTTACCGACGCTTCTCGCAA
1 AAACACCGCTAAAAACAT-AACCTTTACCGACGCTTCTAGCAA
13950224 AAACACCGCTAAAAACATAACCTTTA
1 AAACACCGCTAAAAACATAACCTTTA
13950250 AAAAAATATA
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
40 2 0.04
41 18 0.32
42 26 0.46
43 10 0.18
ACGTcount: A:0.39, C:0.29, G:0.12, T:0.21
Consensus pattern (42 bp):
AAACACCGCTAAAAACATAACCTTTACCGACGCTTCTAGCAA
Found at i:13954598 original size:16 final size:17
Alignment explanation
Indices: 13954562--13954603 Score: 68
Period size: 16 Copynumber: 2.5 Consensus size: 17
13954552 CACTATAATC
13954562 ATTATTTTAATATATTAA
1 ATTA-TTTAATATATTAA
13954580 ATTATTTAATATA-TAA
1 ATTATTTAATATATTAA
13954596 ATTATTTA
1 ATTATTTA
13954604 TAAATAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 11 0.46
17 9 0.38
18 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTATTTAATATATTAA
Found at i:13954814 original size:14 final size:14
Alignment explanation
Indices: 13954797--13954926 Score: 86
Period size: 14 Copynumber: 9.2 Consensus size: 14
13954787 CTTAATCTAT
* *
13954797 AACCTTAAACCATA
1 AACCATAAACCTTA
* *
13954811 AACCATAACCCCTA
1 AACCATAAACCTTA
13954825 AATCC-TAAACCTTA
1 AA-CCATAAACCTTA
13954839 AACCATAAA-CTGTA
1 AACCATAAACCT-TA
* *
13954853 AACCATAACCCCTA
1 AACCATAAACCTTA
* *
13954867 AACCCATAATCCATA
1 AA-CCATAAACCTTA
*
13954882 AACCTTAAA-CTCTA
1 AACCATAAACCT-TA
* * *
13954896 TACCATATACCCTA
1 AACCATAAACCTTA
*
13954910 AACCAAAAACCTTA
1 AACCATAAACCTTA
13954924 AAC
1 AAC
13954927 TATAGAGATA
Statistics
Matches: 89, Mismatches: 20, Indels: 14
0.72 0.16 0.11
Matches are distributed among these distances:
13 5 0.06
14 68 0.76
15 16 0.18
ACGTcount: A:0.46, C:0.32, G:0.01, T:0.21
Consensus pattern (14 bp):
AACCATAAACCTTA
Found at i:13954826 original size:21 final size:21
Alignment explanation
Indices: 13954797--13954926 Score: 102
Period size: 21 Copynumber: 6.1 Consensus size: 21
13954787 CTTAATCTAT
*
13954797 AACCTTAAACCATAAACCATA
1 AACCCTAAACCATAAACCATA
* *
13954818 ACCCCTAAATCC-TAAACCTTA
1 AACCCTAAA-CCATAAACCATA
* **
13954839 AACCATAAACTGTAAACCATA
1 AACCCTAAACCATAAACCATA
* *
13954860 ACCCCTAAACCCATAATCCATA
1 AACCCTAAA-CCATAAACCATA
* *
13954882 AACCTTAAACTC-TATACCATA
1 AACCCTAAAC-CATAAACCATA
* * *
13954903 TACCCTAAACCAAAAACCTTA
1 AACCCTAAACCATAAACCATA
13954924 AAC
1 AAC
13954927 TATAGAGATA
Statistics
Matches: 82, Mismatches: 22, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
20 2 0.02
21 61 0.74
22 19 0.23
ACGTcount: A:0.46, C:0.32, G:0.01, T:0.21
Consensus pattern (21 bp):
AACCCTAAACCATAAACCATA
Found at i:13954867 original size:35 final size:35
Alignment explanation
Indices: 13954797--13954926 Score: 100
Period size: 35 Copynumber: 3.7 Consensus size: 35
13954787 CTTAATCTAT
* * *
13954797 AACCTTAAACCATAAACCATAACCCCTAAATCCTA
1 AACCTTAAACCATAAACCATAAACCATAAACCCTA
** *
13954832 AACCTTAAACCATAAACTGTAAACCATAACCCCTA
1 AACCTTAAACCATAAACCATAAACCATAAACCCTA
* * * * *
13954867 AACCCATAATCCATAAACCTTAAACTC-TATACCATA
1 AA-CCTTAAACCATAAACCATAAAC-CATAAACCCTA
* * * *
13954903 TACCCTAAACCAAAAACCTTAAAC
1 AACCTTAAACCATAAACCATAAAC
13954927 TATAGAGATA
Statistics
Matches: 76, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
35 50 0.66
36 25 0.33
37 1 0.01
ACGTcount: A:0.46, C:0.32, G:0.01, T:0.21
Consensus pattern (35 bp):
AACCTTAAACCATAAACCATAAACCATAAACCCTA
Found at i:13954926 original size:7 final size:7
Alignment explanation
Indices: 13954768--13954891 Score: 58
Period size: 7 Copynumber: 17.7 Consensus size: 7
13954758 CCCTAACCCC
13954768 TAAACCT
1 TAAACCT
13954775 TAAACCT
1 TAAACCT
* *
13954782 CAACCCT
1 TAAACCT
*
13954789 T-AATC-
1 TAAACCT
13954794 TATAACCT
1 TA-AACCT
*
13954802 TAAACCA
1 TAAACCT
*
13954809 TAAACCA
1 TAAACCT
* *
13954816 TAACCCC
1 TAAACCT
13954823 TAAATCC-
1 TAAA-CCT
13954830 TAAACCT
1 TAAACCT
*
13954837 TAAACCA
1 TAAACCT
13954844 TAAA-CT
1 TAAACCT
*
13954850 GTAAACCA
1 -TAAACCT
* *
13954858 TAACCCC
1 TAAACCT
*
13954865 TAAACCCA
1 TAAA-CCT
* *
13954873 TAATCCA
1 TAAACCT
13954880 TAAACCT
1 TAAACCT
13954887 TAAAC
1 TAAAC
13954892 TCTATACCAT
Statistics
Matches: 89, Mismatches: 20, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
5 1 0.01
6 5 0.06
7 73 0.82
8 10 0.11
ACGTcount: A:0.44, C:0.32, G:0.01, T:0.23
Consensus pattern (7 bp):
TAAACCT
Found at i:13955348 original size:41 final size:41
Alignment explanation
Indices: 13955245--13955473 Score: 361
Period size: 41 Copynumber: 5.6 Consensus size: 41
13955235 GGTGCTTTTA
* * *
13955245 CAAAAACGCCGCTAAAG-CCTGAGCATAAGCGGCGCTTTTT
1 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCTC
* *
13955285 CAAAAACGCCGCTAAATCCCCTGAGCATTAGCGGCGCTTTTC
1 CAAAAACGCCGCTAAA-GCCCTGAGCATTAGCGGCGCTTCTC
13955327 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCTC
1 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCTC
*
13955368 CAAAAACGTCGCTAAAGCCCCTGAGCATTAGCGGCGCTTCTC
1 CAAAAACGCCGCTAAAG-CCCTGAGCATTAGCGGCGCTTCTC
*
13955410 CAAAAACACCGCTAAAGCCCTGAGCATTAGCGGCGCTTCTC
1 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCTC
*
13955451 CAAAAACGCCGCTAAAGGCCTGA
1 CAAAAACGCCGCTAAAGCCCTGA
13955474 AAGGTAAAAA
Statistics
Matches: 176, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
40 16 0.09
41 84 0.48
42 76 0.43
ACGTcount: A:0.29, C:0.32, G:0.21, T:0.18
Consensus pattern (41 bp):
CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCTC
Found at i:13955381 original size:83 final size:83
Alignment explanation
Indices: 13955233--13955467 Score: 382
Period size: 83 Copynumber: 2.8 Consensus size: 83
13955223 AAATGTTTTT
* * * * *
13955233 GCGGTGCTTTTACAAAAACGCCGCTAAAG-CCTGAGCATAAGCGGCGCTTTTTCAAAAACGCCGC
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCTCCAAAAACGCCGC
*
13955297 TAAATCCCCTGAGCATTA
66 TAAAGCCCCTGAGCATTA
*
13955315 GCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCTCCAAAAACGTCGC
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCTCCAAAAACGCCGC
13955380 TAAAGCCCCTGAGCATTA
66 TAAAGCCCCTGAGCATTA
* *
13955398 GCGGCGCTTCTCCAAAAACACCGCTAAAGCCCTGAGCATTAGCGGCGCTTCTCCAAAAACGCCGC
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCTCCAAAAACGCCGC
13955463 TAAAG
66 TAAAG
13955468 GCCTGAAAGG
Statistics
Matches: 142, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
82 27 0.19
83 115 0.81
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.19
Consensus pattern (83 bp):
GCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCTCCAAAAACGCCGC
TAAAGCCCCTGAGCATTA
Found at i:13955568 original size:40 final size:40
Alignment explanation
Indices: 13955511--13955640 Score: 208
Period size: 40 Copynumber: 3.2 Consensus size: 40
13955501 TAGGTTTTTT
* *
13955511 GCGGCGTTTTCCT-TAAAGCGCCGCTAATGCTCGATCTTCA
1 GCGGCGTTTT-ATATAAAGCGCCGCTAATGCTCGATCTTTA
13955551 GCGGCGTTTTATATAAAGCGCCGCTAATGCTCGATCTTTA
1 GCGGCGTTTTATATAAAGCGCCGCTAATGCTCGATCTTTA
* *
13955591 GCTGCGTTTTATATAAAGCGCCGCTAATGCTCGATTTTTA
1 GCGGCGTTTTATATAAAGCGCCGCTAATGCTCGATCTTTA
13955631 GCGGCGTTTT
1 GCGGCGTTTT
13955641 TTATTCAAAC
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
39 1 0.01
40 83 0.99
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (40 bp):
GCGGCGTTTTATATAAAGCGCCGCTAATGCTCGATCTTTA
Found at i:13964077 original size:45 final size:45
Alignment explanation
Indices: 13964014--13964100 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
13964004 TTTTATTCAT
* * * *
13964014 TTTTGTATTTTGGTAAAATACGCCATCTTGATTAATTTATTCTCA
1 TTTTGTATTCTAGCAAAATACGCCATCTTGATTAATTCATTCTCA
** *
13964059 TTTTGTATTCTAGCAAAATTTGCTATCTTGATTAATTCATTC
1 TTTTGTATTCTAGCAAAATACGCCATCTTGATTAATTCATTC
13964101 ATTCCGAGCT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.26, C:0.14, G:0.10, T:0.49
Consensus pattern (45 bp):
TTTTGTATTCTAGCAAAATACGCCATCTTGATTAATTCATTCTCA
Found at i:13965097 original size:100 final size:100
Alignment explanation
Indices: 13964977--13966403 Score: 1417
Period size: 100 Copynumber: 14.3 Consensus size: 100
13964967 ATTACAGTGG
* * * * * *
13964977 AATAAATTGAAGTTATAACGGCGAATCTTACCTCCCTAGTAGTGTAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTA
* * *
13965042 CGACGTCGAATCTTGTTTCCCCGACATTACAGGTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* *
13965077 AATAGATTGAAGTTACAACGGCGAATCTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTA
* * * *
13965142 TGATGGCGAATCTTGTTTTCCCGATATTGCAGTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * * * *
13965177 AATAGATTGAAGCTACAACAGCGAGTCTTACCTCCCTGGCGGTGTAGTGGAACAAATTGAAGCTA
1 AATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTA
*
13965242 CGATGGCGAATCTTGTTTCCCCGACATTGCAGTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * *
13965277 AATAGATTGAAGCTACAATGGCGAACCTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTA
* **
13965342 CGACGACGAATCTTGTTTCCATGACATTGCAGTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* *
13965377 AATAGATTGAAGCTACAACGGCGAATCTTACTTCTCTGGTGGTGTCGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTA
*** * * * ** * **
13965442 CGACAATGAATCTTGCTTCCCTGGCGGTGTAGTGG
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * ** ****** * ** *
13965477 AACATATTGAAGCTACAACGGCGAATCTTGTTTCCCCAACATTGCAGTTAAATAGATTGAAGCTA
1 AATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTA
* *** * * * **
13965542 -GACGGCAAATCTTACCTCCCTGGCGA-TGTAGTGG
66 CGACGGCGAATCTTGTTTCCCCGAC-ATTGCAGTTA
* * * ** *
13965576 AACAGACTGAAGCTACGACGGCGAATCTTGTTTCCCTGGTGGTGTAGTGGAATAGATTGAAGCTA
1 AATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTA
*
13965641 CGATGGCGAATCTTGTTTCCCCGACATTGCAGTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * *
13965676 AATAGATTGAAGCTACAATGGCGAACCTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTA
* **
13965741 CGACGACGAATCTTGTTTCCATGACATTGCAGTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* *
13965776 AATAGATTGAAGCTACAACGGCGAATCTTACTTCTCTGGTGGTGTCGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTA
*** * * * ** * **
13965841 CGACAATGAATCTTGCTTCCCTGGCGGTGTAGTGG
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * ** ****** ** ** *
13965876 AACATATTGAAGCTACAACGGCGAATCTTGTTTCCCCAACATTGCGGTTAAATAGATTGAAGCTA
1 AATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTA
* *** * * * **
13965941 -GACGGCAAATCTTACCTCCCTGGCGA-TGTAGTGG
66 CGACGGCGAATCTTGTTTCCCCGAC-ATTGCAGTTA
* * * ** *
13965975 AACAGACTGAAGCTACGACGGCGAATCTTGTTTCCCTGGTGGTGTAGTGGAATAGATTGAAGCTA
1 AATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTA
13966040 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * * * * *
13966075 AATATATTGAAGCTATAACGGCCAATCTTACTTACCTGGCGGTGTAATGGAACAGATTGAAGCTA
1 AATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTA
* * *
13966140 CGACAGTGAATCTTGTTTTCCCGACATTGCAGTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * * * * *
13966175 AA-ATATTGAAGCTATAACAGCGAATCTTACTTACCTGGCGGTGTAGTGGAACAGATTGATGCTA
1 AATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTA
* *
13966239 CGACGGTGAATCTTGTTTCCCCGACATTGTAGTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * * ** * **** * * *
13966274 AATAAATTGAAACTACAATGATGAATCTTA-TCTCCTTGAAATTGCAGTAGAGCAGATTGAAGCT
1 AATAGATTGAAGCTACAACGGCGAATCTTACT-TCCCTGGTGGTGTAGTGGAACAGATTGAAGCT
* *
13966338 ATGACGGCGAATCTTGTTTCCCCGACATTACAGTTA
65 ACGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
*
13966374 AATAGATTGAAGCTACAATGGCGAATCTTA
1 AATAGATTGAAGCTACAACGGCGAATCTTA
13966404 TCTCCCTAAA
Statistics
Matches: 1110, Mismatches: 209, Indels: 16
0.83 0.16 0.01
Matches are distributed among these distances:
99 252 0.23
100 858 0.77
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (100 bp):
AATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTA
CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
Found at i:13965721 original size:399 final size:399
Alignment explanation
Indices: 13965209--13966259 Score: 1822
Period size: 399 Copynumber: 2.6 Consensus size: 399
13965199 GAGTCTTACC
* * *
13965209 TCCCTGGCGGTGTAGTGGAACAAATTGAAGCTACGATGGCGAATCTTGTTTCCCCGACATTGCAG
1 TCCCTGGTGGTGTAGTGGAATAGATTGAAGCTACGATGGCGAATCTTGTTTCCCCGACATTGCAG
13965274 TTAAATAGATTGAAGCTACAATGGCGAACCTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAG
66 TTAAATAGATTGAAGCTACAATGGCGAACCTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAG
13965339 CTACGACGACGAATCTTGTTTCCATGACATTGCAGTTAAATAGATTGAAGCTACAACGGCGAATC
131 CTACGACGACGAATCTTGTTTCCATGACATTGCAGTTAAATAGATTGAAGCTACAACGGCGAATC
13965404 TTACTTCTCTGGTGGTGTCGTGGAACAGATTGAAGCTACGACAATGAATCTTGCTTCCCTGGCGG
196 TTACTTCTCTGGTGGTGTCGTGGAACAGATTGAAGCTACGACAATGAATCTTGCTTCCCTGGCGG
13965469 TGTAGTGGAACATATTGAAGCTACAACGGCGAATCTTGTTTCCCCAACATTGCAGTTAAATAGAT
261 TGTAGTGGAACATATTGAAGCTACAACGGCGAATCTTGTTTCCCCAACATTGCAGTTAAATAGAT
13965534 TGAAGCTAGACGGCAAATCTTACCTCCCTGGCGATGTAGTGGAACAGACTGAAGCTACGACGGCG
326 TGAAGCTAGACGGCAAATCTTACCTCCCTGGCGATGTAGTGGAACAGACTGAAGCTACGACGGCG
13965599 AATCTTGTT
391 AATCTTGTT
13965608 TCCCTGGTGGTGTAGTGGAATAGATTGAAGCTACGATGGCGAATCTTGTTTCCCCGACATTGCAG
1 TCCCTGGTGGTGTAGTGGAATAGATTGAAGCTACGATGGCGAATCTTGTTTCCCCGACATTGCAG
13965673 TTAAATAGATTGAAGCTACAATGGCGAACCTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAG
66 TTAAATAGATTGAAGCTACAATGGCGAACCTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAG
13965738 CTACGACGACGAATCTTGTTTCCATGACATTGCAGTTAAATAGATTGAAGCTACAACGGCGAATC
131 CTACGACGACGAATCTTGTTTCCATGACATTGCAGTTAAATAGATTGAAGCTACAACGGCGAATC
13965803 TTACTTCTCTGGTGGTGTCGTGGAACAGATTGAAGCTACGACAATGAATCTTGCTTCCCTGGCGG
196 TTACTTCTCTGGTGGTGTCGTGGAACAGATTGAAGCTACGACAATGAATCTTGCTTCCCTGGCGG
*
13965868 TGTAGTGGAACATATTGAAGCTACAACGGCGAATCTTGTTTCCCCAACATTGCGGTTAAATAGAT
261 TGTAGTGGAACATATTGAAGCTACAACGGCGAATCTTGTTTCCCCAACATTGCAGTTAAATAGAT
13965933 TGAAGCTAGACGGCAAATCTTACCTCCCTGGCGATGTAGTGGAACAGACTGAAGCTACGACGGCG
326 TGAAGCTAGACGGCAAATCTTACCTCCCTGGCGATGTAGTGGAACAGACTGAAGCTACGACGGCG
13965998 AATCTTGTT
391 AATCTTGTT
*
13966007 TCCCTGGTGGTGTAGTGGAATAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGCAG
1 TCCCTGGTGGTGTAGTGGAATAGATTGAAGCTACGATGGCGAATCTTGTTTCCCCGACATTGCAG
* * * * * * * * *
13966072 TTAAATATATTGAAGCTATAACGGCCAATCTTACTTACCTGGCGGTGTAATGGAACAGATTGAAG
66 TTAAATAGATTGAAGCTACAATGGCGAACCTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAG
* * * * *
13966137 CTACGAC-AGTGAATCTTGTTTTCC-CGACATTGCAGTTAAA-ATATTGAAGCTATAACAGCGAA
131 CTACGACGA-CGAATCTTG-TTTCCATGACATTGCAGTTAAATAGATTGAAGCTACAACGGCGAA
* * * ** *
13966199 TCTTACTTAC-CTGGCGGTGTAGTGGAACAGATTGATGCTACGACGGTGAATCTTGTTTCCC
194 TCTTACTT-CTCTGGTGGTGTCGTGGAACAGATTGAAGCTACGACAATGAATCTTGCTTCCC
13966260 CGACATTGTA
Statistics
Matches: 624, Mismatches: 25, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
398 73 0.12
399 546 0.88
400 5 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (399 bp):
TCCCTGGTGGTGTAGTGGAATAGATTGAAGCTACGATGGCGAATCTTGTTTCCCCGACATTGCAG
TTAAATAGATTGAAGCTACAATGGCGAACCTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAG
CTACGACGACGAATCTTGTTTCCATGACATTGCAGTTAAATAGATTGAAGCTACAACGGCGAATC
TTACTTCTCTGGTGGTGTCGTGGAACAGATTGAAGCTACGACAATGAATCTTGCTTCCCTGGCGG
TGTAGTGGAACATATTGAAGCTACAACGGCGAATCTTGTTTCCCCAACATTGCAGTTAAATAGAT
TGAAGCTAGACGGCAAATCTTACCTCCCTGGCGATGTAGTGGAACAGACTGAAGCTACGACGGCG
AATCTTGTT
Found at i:13966054 original size:50 final size:50
Alignment explanation
Indices: 13964994--13966259 Score: 845
Period size: 50 Copynumber: 25.4 Consensus size: 50
13964984 TGAAGTTATA
* * * **
13964994 ACGGCGAATCTTACCTCCCTAGTAGTGTAGTGGAACAGATTGAAGCTACG
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * * * * ** * * *
13965044 ACGTCGAATCTTGTTTCCCCGAC-AT-TACAGGTAAATAGATTGAAGTTACA
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGG--AACAGATTGAAGCTACG
* * * *
13965094 ACGGCGAATCTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTATG
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * **** * ** * *
13965144 ATGGCGAATCTTGTTTTCCC-GATATTGCAGTTAAATAGATTGAAGCTACA
1 ACGGCGAATCTTG-CTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * * * *
13965194 ACAGCGAGTCTTACCTCCCTGGCGGTGTAGTGGAACAAATTGAAGCTACG
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * * * ** * ** * *
13965244 ATGGCGAATCTTGTTTCCCCGACATTGCAGTTAAATAGATTGAAGCTACA
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * * * *
13965294 ATGGCGAACCTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTACG
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * * * ** * ** * *
13965344 ACGACGAATCTTGTTTCCATGACATTGCAGTTAAATAGATTGAAGCTACA
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * * *
13965394 ACGGCGAATCTTACTTCTCTGGTGGTGTCGTGGAACAGATTGAAGCTACG
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
*** * *
13965444 ACAATGAATCTTGCTTCCCTGGCGGTGTAGTGGAACATATTGAAGCTACA
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* *** ** * ** *
13965494 ACGGCGAATCTTGTTTCCCCAACATTGCAGTTAAATAGATTGAAGCTA-G
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * * * *
13965543 ACGGCAAATCTTACCTCCCTGGCGATGTAGTGGAACAGACTGAAGCTACG
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * *
13965593 ACGGCGAATCTTGTTTCCCTGGTGGTGTAGTGGAATAGATTGAAGCTACG
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * * * ** * ** * *
13965643 ATGGCGAATCTTGTTTCCCCGACATTGCAGTTAAATAGATTGAAGCTACA
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * * * *
13965693 ATGGCGAACCTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTACG
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * * * ** * ** * *
13965743 ACGACGAATCTTGTTTCCATGACATTGCAGTTAAATAGATTGAAGCTACA
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * * *
13965793 ACGGCGAATCTTACTTCTCTGGTGGTGTCGTGGAACAGATTGAAGCTACG
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
*** * *
13965843 ACAATGAATCTTGCTTCCCTGGCGGTGTAGTGGAACATATTGAAGCTACA
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* *** ** ** ** *
13965893 ACGGCGAATCTTGTTTCCCCAACATTGCGGTTAAATAGATTGAAGCTA-G
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * * * *
13965942 ACGGCAAATCTTACCTCCCTGGCGATGTAGTGGAACAGACTGAAGCTACG
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * *
13965992 ACGGCGAATCTTGTTTCCCTGGTGGTGTAGTGGAATAGATTGAAGCTACG
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * * ** * ** * * **
13966042 ACGGCGAATCTTGTTTCCCCGACATTGCAGTTAAATATATTGAAGCTATA
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * * *
13966092 ACGGCCAATCTTACTTACCTGGCGGTGTAATGGAACAGATTGAAGCTACG
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * * * ** * * * * **
13966142 ACAGTGAATCTTGTTTTCCC-GACATTGCAGT-TAAAATATTGAAGCTATA
1 ACGGCGAATCTTG-CTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* * * *
13966191 ACAGCGAATCTTACTTACCTGGCGGTGTAGTGGAACAGATTGATGCTACG
1 ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* *
13966241 ACGGTGAATCTTGTTTCCC
1 ACGGCGAATCTTGCTTCCC
13966260 CGACATTGTA
Statistics
Matches: 876, Mismatches: 329, Indels: 22
0.71 0.27 0.02
Matches are distributed among these distances:
48 8 0.01
49 103 0.12
50 752 0.86
51 9 0.01
52 4 0.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.28
Consensus pattern (50 bp):
ACGGCGAATCTTGCTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
Found at i:13966270 original size:50 final size:50
Alignment explanation
Indices: 13965019--13966402 Score: 822
Period size: 50 Copynumber: 27.7 Consensus size: 50
13965009 TCCCTAGTAG
* * *
13965019 TGTAGTGGAACAGATTGAAGCTACGACGTCGAATCTTGTTTCCCCGACAT
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
** * * * * *** ***
13965069 TACAG-GTAAATAGATTGAAGTTACAACGGCGAATCTTACCTCCCTGGTGG
1 TGTAGTG-GAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* * **
13965119 TGTAGTGGAACAGATTGAAGCTATGATGGCGAATCTTGTTTTCCC-GATAT
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTG-TTTCCCTGGCAT
* ** * * * * *** **
13965169 TGCAGTTAAATAGATTGAAGCTACAACAGCGAGTCTTACCTCCCTGGCGG
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* * * *
13965219 TGTAGTGGAACAAATTGAAGCTACGATGGCGAATCTTGTTTCCCCGACAT
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* ** * * * * *** ***
13965269 TGCAGTTAAATAGATTGAAGCTACAATGGCGAACCTTACCTCCCTGGTGG
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* * *
13965319 TGTAGTGGAACAGATTGAAGCTACGACGACGAATCTTGTTTCCATGACAT
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* ** * * ** * ***
13965369 TGCAGTTAAATAGATTGAAGCTACAACGGCGAATCTTACTTCTCTGGTGG
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* *** * **
13965419 TGTCGTGGAACAGATTGAAGCTACGACAATGAATCTTGCTTCCCTGGCGG
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* * ***
13965469 TGTAGTGGAACATATTGAAGCTACAACGGCGAATCTTGTTTCCCCAACAT
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* ** * * ***
13965519 TGCAGTTAAATAGATTGAAGCTA-GACGGCAAATCTTACCTCCCTGGCGA-
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGC-AT
* ***
13965568 TGTAGTGGAACAGACTGAAGCTACGACGGCGAATCTTGTTTCCCTGGTGG
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* * * *
13965618 TGTAGTGGAATAGATTGAAGCTACGATGGCGAATCTTGTTTCCCCGACAT
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* ** * * * * *** ***
13965668 TGCAGTTAAATAGATTGAAGCTACAATGGCGAACCTTACCTCCCTGGTGG
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* * *
13965718 TGTAGTGGAACAGATTGAAGCTACGACGACGAATCTTGTTTCCATGACAT
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* ** * * ** * ***
13965768 TGCAGTTAAATAGATTGAAGCTACAACGGCGAATCTTACTTCTCTGGTGG
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* *** * **
13965818 TGTCGTGGAACAGATTGAAGCTACGACAATGAATCTTGCTTCCCTGGCGG
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* * ***
13965868 TGTAGTGGAACATATTGAAGCTACAACGGCGAATCTTGTTTCCCCAACAT
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
** ** * * ***
13965918 TGCGGTTAAATAGATTGAAGCTA-GACGGCAAATCTTACCTCCCTGGCGA-
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGC-AT
* ***
13965967 TGTAGTGGAACAGACTGAAGCTACGACGGCGAATCTTGTTTCCCTGGTGG
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* * *
13966017 TGTAGTGGAATAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGACAT
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* ** * * ** * ** * **
13966067 TGCAGTTAAATATATTGAAGCTATAACGGCCAATCTTACTTACCTGGCGG
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* * * *
13966117 TGTAATGGAACAGATTGAAGCTACGACAGTGAATCTTGTTTTCCC-GACAT
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTG-TTTCCCTGGCAT
* * * * ** * ** * **
13966167 TGCAGT-TAAAATATTGAAGCTATAACAGCGAATCTTACTTACCTGGCGG
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* * * *
13966216 TGTAGTGGAACAGATTGATGCTACGACGGTGAATCTTGTTTCCCCGACAT
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
** * * * * * ** * * * **
13966266 TGTAGTTAAATAAATTGAAACTACAATGATGAATCTTATCTCCTTGAAAT
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
* * * * * *
13966316 TGCAGTAGAGCAGATTGAAGCTATGACGGCGAATCTTGTTTCCCCGACAT
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
** ** * * *
13966366 TACAGTTAAATAGATTGAAGCTACAATGGCGAATCTT
1 TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTT
13966403 ATCTCCCTAA
Statistics
Matches: 959, Mismatches: 362, Indels: 26
0.71 0.27 0.02
Matches are distributed among these distances:
48 4 0.00
49 103 0.11
50 843 0.88
51 9 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (50 bp):
TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGGCAT
Found at i:13966387 original size:399 final size:399
Alignment explanation
Indices: 13964977--13966402 Score: 1695
Period size: 399 Copynumber: 3.6 Consensus size: 399
13964967 ATTACAGTGG
* * * * * * *
13964977 AATAAATTGAAGTTATAACGGCGAATCTTACCTCCCTAGTAGTGTAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCTACAACGGCGAATCTTACTTCTCTGGTGGTGTAGTGGAACAGATTGAAGCTA
* * * ** * * *
13965042 CGAC-GTCGAATCTTGTTTCCCCGACATTACAG-GTAAATAGATTGAAGTTACAACGGCGAATCT
66 CGACAAT-GAATCTTGCTTCCCCGACAGTGTAGTG-AAACATATTGAAGCTACAACGGCGAATCT
* ****** * ** * * *** * *
13965105 TACCTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTATGATGGCGAATCTTGTTTTCCCGA-TAT
129 TATCTCCCCAACATTGCAGTTAAACAGATTGAAGCTA-GACGGCAAATCTTACCTCCCCGACGA-
* * * * * * *** * * *
13965169 TGCAGTTAAATAGATTGAAGCTACAACAGCGAGTCTTACCTCCCTGGCGGTGTAGTGGAACAAAT
192 TGTAGTGAAACAGACTGAAGCTACAACGGCGAATCTTGTTTCCCTGGTGGTGTAGTGGAATAGAT
13965234 TGAAGCTACGATGGCGAATCTTGTTTCCCCGACATTGCAGTTAAATAGATTGAAGCTACAATGGC
257 TGAAGCTACGATGGCGAATCTTGTTTCCCCGACATTGCAGTTAAATAGATTGAAGCTACAATGGC
13965299 GAACCTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTACGACGACGAATCTTGTTTCCAT
322 GAACCTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTACGACGACGAATCTTGTTTCCAT
13965364 GACATTGCAGTTA
387 GACATTGCAGTTA
*
13965377 AATAGATTGAAGCTACAACGGCGAATCTTACTTCTCTGGTGGTGTCGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCTACAACGGCGAATCTTACTTCTCTGGTGGTGTAGTGGAACAGATTGAAGCTA
* * * * *
13965442 CGACAATGAATCTTGCTTCCCTGGCGGTGTAGTGGAACATATTGAAGCTACAACGGCGAATCTTG
66 CGACAATGAATCTTGCTTCCCCGACAGTGTAGTGAAACATATTGAAGCTACAACGGCGAATCTTA
* * * *
13965507 TTTCCCCAACATTGCAGTTAAATAGATTGAAGCTAGACGGCAAATCTTACCTCCCTGGCGATGTA
131 TCTCCCCAACATTGCAGTTAAACAGATTGAAGCTAGACGGCAAATCTTACCTCCCCGACGATGTA
* *
13965572 GTGGAACAGACTGAAGCTACGACGGCGAATCTTGTTTCCCTGGTGGTGTAGTGGAATAGATTGAA
196 GTGAAACAGACTGAAGCTACAACGGCGAATCTTGTTTCCCTGGTGGTGTAGTGGAATAGATTGAA
13965637 GCTACGATGGCGAATCTTGTTTCCCCGACATTGCAGTTAAATAGATTGAAGCTACAATGGCGAAC
261 GCTACGATGGCGAATCTTGTTTCCCCGACATTGCAGTTAAATAGATTGAAGCTACAATGGCGAAC
13965702 CTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTACGACGACGAATCTTGTTTCCATGACA
326 CTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTACGACGACGAATCTTGTTTCCATGACA
13965767 TTGCAGTTA
391 TTGCAGTTA
*
13965776 AATAGATTGAAGCTACAACGGCGAATCTTACTTCTCTGGTGGTGTCGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCTACAACGGCGAATCTTACTTCTCTGGTGGTGTAGTGGAACAGATTGAAGCTA
* * * * *
13965841 CGACAATGAATCTTGCTTCCCTGGCGGTGTAGTGGAACATATTGAAGCTACAACGGCGAATCTTG
66 CGACAATGAATCTTGCTTCCCCGACAGTGTAGTGAAACATATTGAAGCTACAACGGCGAATCTTA
* * * * *
13965906 TTTCCCCAACATTGCGGTTAAATAGATTGAAGCTAGACGGCAAATCTTACCTCCCTGGCGATGTA
131 TCTCCCCAACATTGCAGTTAAACAGATTGAAGCTAGACGGCAAATCTTACCTCCCCGACGATGTA
* *
13965971 GTGGAACAGACTGAAGCTACGACGGCGAATCTTGTTTCCCTGGTGGTGTAGTGGAATAGATTGAA
196 GTGAAACAGACTGAAGCTACAACGGCGAATCTTGTTTCCCTGGTGGTGTAGTGGAATAGATTGAA
* * * * * *
13966036 GCTACGACGGCGAATCTTGTTTCCCCGACATTGCAGTTAAATATATTGAAGCTATAACGGCCAAT
261 GCTACGATGGCGAATCTTGTTTCCCCGACATTGCAGTTAAATAGATTGAAGCTACAATGGCGAAC
* * * * * *
13966101 CTTACTTACCTGGCGGTGTAATGGAACAGATTGAAGCTACGAC-AGTGAATCTTGTTTTCC-CGA
326 CTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTACGACGA-CGAATCTTG-TTTCCATGA
13966164 CATTGCAGTTA
389 CATTGCAGTTA
* * * * *
13966175 AA-ATATTGAAGCTATAACAGCGAATCTTACTTAC-CTGGCGGTGTAGTGGAACAGATTGATGCT
1 AATAGATTGAAGCTACAACGGCGAATCTTACTT-CTCTGGTGGTGTAGTGGAACAGATTGAAGCT
** * * * * * * * **
13966238 ACGACGGTGAATCTTGTTTCCCCGACATTGTAGTTAAATAAATTGAAACTACAATGATGAATCTT
65 ACGACAATGAATCTTGCTTCCCCGACAGTGTAGTGAAACATATTGAAGCTACAACGGCGAATCTT
** * * ***
13966303 ATCTCCTTGAA-ATTGCAG-TAGAGCAGATTGAAGCTATGACGGCGAATCTTGTTTCCCCGAC-A
130 ATCTCC-CCAACATTGCAGTTA-AACAGATTGAAGCTA-GACGGCAAATCTTACCTCCCCGACGA
* * * *
13966365 T-TACAGTTAAATAGATTGAAGCTACAATGGCGAATCTT
192 TGT--AGTGAAACAGACTGAAGCTACAACGGCGAATCTT
13966403 ATCTCCCTAA
Statistics
Matches: 906, Mismatches: 109, Indels: 23
0.87 0.11 0.02
Matches are distributed among these distances:
397 3 0.00
398 129 0.14
399 638 0.70
400 134 0.15
401 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (399 bp):
AATAGATTGAAGCTACAACGGCGAATCTTACTTCTCTGGTGGTGTAGTGGAACAGATTGAAGCTA
CGACAATGAATCTTGCTTCCCCGACAGTGTAGTGAAACATATTGAAGCTACAACGGCGAATCTTA
TCTCCCCAACATTGCAGTTAAACAGATTGAAGCTAGACGGCAAATCTTACCTCCCCGACGATGTA
GTGAAACAGACTGAAGCTACAACGGCGAATCTTGTTTCCCTGGTGGTGTAGTGGAATAGATTGAA
GCTACGATGGCGAATCTTGTTTCCCCGACATTGCAGTTAAATAGATTGAAGCTACAATGGCGAAC
CTTACCTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTACGACGACGAATCTTGTTTCCATGACA
TTGCAGTTA
Found at i:13966431 original size:50 final size:48
Alignment explanation
Indices: 13966296--13966571 Score: 160
Period size: 44 Copynumber: 5.9 Consensus size: 48
13966286 CTACAATGAT
* * * * *
13966296 GAATCTTATCTCCTTGAAATTGCAGTAGAGCAGATTGAAGCTATGACGGC
1 GAATCTTATCTCCCTAAAATTGCAGTGGAGCAGATTGAAGCTA-CA-AGC
* * ** * * ** **
13966346 GAATCTTGTTTCCCCGACATTACAGTTAAATAGATTGAAGCTACAATGGC
1 GAATCTTATCTCCCTAAAATTGCAGTGGAGCAGATTGAAGCTACAA--GC
*
13966396 GAATCTTATCTCCCTAAAATTGCAATGGAGCAGATTGAAGC--C-A-C
1 GAATCTTATCTCCCTAAAATTGCAGTGGAGCAGATTGAAGCTACAAGC
* * * * *
13966440 TAATCTTATCCCCCTAAAGTTGCAGTGGGGCAGATTGAAGATACAA--
1 GAATCTTATCTCCCTAAAATTGCAGTGGAGCAGATTGAAGCTACAAGC
* * * *
13966486 G--TCTTATCTCCCTAAAGTTGCAGTGGAGCAAACTGAAG--A-TAGC
1 GAATCTTATCTCCCTAAAATTGCAGTGGAGCAGATTGAAGCTACAAGC
* * * * * *
13966529 AAATCTTATTTCCTTGAAGTTGCAGTGGAACAGATTGAAGCTA
1 GAATCTTATCTCCCTAAAATTGCAGTGGAGCAGATTGAAGCTA
13966572 AATAACAGAT
Statistics
Matches: 173, Mismatches: 42, Indels: 25
0.72 0.17 0.10
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
44 69 0.40
45 31 0.18
46 1 0.01
47 3 0.02
48 1 0.01
49 1 0.01
50 65 0.38
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (48 bp):
GAATCTTATCTCCCTAAAATTGCAGTGGAGCAGATTGAAGCTACAAGC
Found at i:13966568 original size:45 final size:44
Alignment explanation
Indices: 13966397--13966691 Score: 227
Period size: 44 Copynumber: 6.6 Consensus size: 44
13966387 TACAATGGCG
* * ** *
13966397 AATCTTATCTCCCTAAAATTGCAATGGAGCAGATTGAAGCCACT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATACA
* *
13966441 AATCTTATCCCCCTAAAGTTGCAGTGGGGCAGATTGAAGATACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATACA
* * *
13966485 AGTCTTATCTCCCTAAAGTTGCAGTGGAGCAAACTGAAGATAGCA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * *
13966530 AATCTTATTTCCTTGAAGTTGCAGTGGAACAGATTGAAGCTAAATAACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAG----AT-ACA
* * ** * * * * * *
13966579 GATCTTATCTCTCTGGAGTTGTAGTAGAACGGA-T-CATAT-CA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * * *
13966620 AACCTTATCTCCCTAAAGTTGTAGTGGAACAGGTTGAAGCTACT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATACA
* *
13966664 AATCCTATCTCCCTGAAGTTGCAGTGGA
1 AATCTTATCTCCCTAAAGTTGCAGTGGA
13966692 TTGGATTAAA
Statistics
Matches: 197, Mismatches: 45, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
41 27 0.14
42 1 0.01
43 4 0.02
44 99 0.50
45 34 0.17
47 1 0.01
48 1 0.01
49 29 0.15
50 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATACA
Found at i:13968183 original size:13 final size:13
Alignment explanation
Indices: 13968167--13968191 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13968157 AGTTATTAAT
13968167 TTTATTTTATTTA
1 TTTATTTTATTTA
13968180 TTTATTTTATTT
1 TTTATTTTATTT
13968192 TATATTCGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:13968186 original size:18 final size:18
Alignment explanation
Indices: 13968159--13968194 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
13968149 TTAAAAATAG
13968159 TTATTAATTTTATTTTAT
1 TTATTAATTTTATTTTAT
*
13968177 TTATTTATTTTATTTTAT
1 TTATTAATTTTATTTTAT
13968195 ATTCGTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (18 bp):
TTATTAATTTTATTTTAT
Found at i:13973427 original size:40 final size:40
Alignment explanation
Indices: 13973381--13973460 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
13973371 AGTTTTTCTT
13973381 TTCAAGAATTTCTCTTGAGTTTCTTTTAGAAGAGTTTTAA
1 TTCAAGAATTTCTCTTGAGTTTCTTTTAGAAGAGTTTTAA
*
13973421 TTCAAGAATTTCTCTTGAGTTTCTTTTAGAATAGTTTTAA
1 TTCAAGAATTTCTCTTGAGTTTCTTTTAGAAGAGTTTTAA
13973461 CAATCTTTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.49
Consensus pattern (40 bp):
TTCAAGAATTTCTCTTGAGTTTCTTTTAGAAGAGTTTTAA
Found at i:13973691 original size:13 final size:13
Alignment explanation
Indices: 13973646--13973691 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
13973636 TAATCTTTGA
*
13973646 TTTATTATTTTAT
1 TTTATTTTTTTAT
* *
13973659 TTTAGTTATTTAT
1 TTTATTTTTTTAT
13973672 TTTATTTTTTTAT
1 TTTATTTTTTTAT
*
13973685 TTGATTT
1 TTTATTT
13973692 GGATTCAATT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.20, C:0.00, G:0.04, T:0.76
Consensus pattern (13 bp):
TTTATTTTTTTAT
Found at i:13974257 original size:4 final size:4
Alignment explanation
Indices: 13974248--13974386 Score: 235
Period size: 4 Copynumber: 34.8 Consensus size: 4
13974238 CACAACAAGG
* * *
13974248 ACAT ACAT ACGT ACAT ACAT GCA- AGCAT GCAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT A-CAT ACAT ACAT ACAT ACAT ACAT
13974296 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
13974344 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA
13974387 ACAATTCAAG
Statistics
Matches: 127, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
4 127 1.00
ACGTcount: A:0.48, C:0.25, G:0.03, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:13975078 original size:22 final size:22
Alignment explanation
Indices: 13975039--13975080 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
13975029 AAATCAAATC
*
13975039 TCTAAAATTATAGAATCATACT
1 TCTAAAATTATACAATCATACT
13975061 TCTAAAATT-TACATATCATA
1 TCTAAAATTATACA-ATCATA
13975081 TCTAAGATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.38
Consensus pattern (22 bp):
TCTAAAATTATACAATCATACT
Found at i:13976009 original size:4 final size:4
Alignment explanation
Indices: 13976000--13976110 Score: 204
Period size: 4 Copynumber: 27.8 Consensus size: 4
13975990 CACAACGAGG
*
13976000 ACAT ACAT ACAT ACAT ACAT ACAT ATAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
13976048 ACAT ACAT ACAT ACAT ACAT ACAT ATAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
13976096 ACAT ACAT ACAT ACA
1 ACAT ACAT ACAT ACA
13976111 GCAATTCAAA
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 103 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ACAT
Found at i:13978121 original size:11 final size:11
Alignment explanation
Indices: 13978090--13978114 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
13978080 TTCAAGAAAA
13978090 TTTAGTATATT
1 TTTAGTATATT
13978101 TTTAGTATATT
1 TTTAGTATATT
13978112 TTT
1 TTT
13978115 TTTATATAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (11 bp):
TTTAGTATATT
Found at i:13978212 original size:17 final size:17
Alignment explanation
Indices: 13978174--13978217 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
13978164 CGGCCTATTC
*
13978174 AAATATATAATGTTATA
1 AAATATATTATGTTATA
13978191 AAATATATTATGTTA-A
1 AAATATATTATGTTATA
13978207 ATAATA-ATTAT
1 A-AATATATTAT
13978218 ATATTTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 7 0.28
17 18 0.72
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (17 bp):
AAATATATTATGTTATA
Found at i:13978923 original size:30 final size:31
Alignment explanation
Indices: 13978882--13978943 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
13978872 TTGGACTTAT
13978882 TTGTGTAACCCTA-TTTCAAATTGCACACGG
1 TTGTGTAACCCTATTTTCAAATTGCACACGG
* * *
13978912 TTGTGTGACCCTATTTTCGAATTGTACACGG
1 TTGTGTAACCCTATTTTCAAATTGCACACGG
13978943 T
1 T
13978944 CTGATCACAC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 12 0.43
31 16 0.57
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (31 bp):
TTGTGTAACCCTATTTTCAAATTGCACACGG
Found at i:13983177 original size:20 final size:19
Alignment explanation
Indices: 13983151--13983199 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 19
13983141 TTACAAAAAT
13983151 ATTCAAAATAAATTTCAAA
1 ATTCAAAATAAATTTCAAA
* *
13983170 AGTTCAAAACAAATTTTAAA
1 A-TTCAAAATAAATTTCAAA
13983190 ATTCAAAATA
1 ATTCAAAATA
13983200 TTTATAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATTCAAAATAAATTTCAAA
Found at i:13983209 original size:19 final size:17
Alignment explanation
Indices: 13983180--13983222 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
13983170 AGTTCAAAAC
*
13983180 AAATTT-TAAAATTCAAA
1 AAATTTATAAAAAT-AAA
*
13983197 ATATTTATAAAAATAAA
1 AAATTTATAAAAATAAA
13983214 AAATTTATA
1 AAATTTATA
13983223 TTTTATAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
AAATTTATAAAAATAAA
Found at i:13989408 original size:33 final size:33
Alignment explanation
Indices: 13989366--13989432 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 33
13989356 CGTAAATATT
*
13989366 AGGGTTGGATAAATAACTAAATTAAAGAA-TCTA
1 AGGGTTGGATAAATAACCAAATTAAA-AATTCTA
13989399 AGGGTTGGATAAATAACCAAATTAAAAATTCTA
1 AGGGTTGGATAAATAACCAAATTAAAAATTCTA
13989432 A
1 A
13989433 TCTTAATCTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 2 0.06
33 30 0.94
ACGTcount: A:0.49, C:0.07, G:0.16, T:0.27
Consensus pattern (33 bp):
AGGGTTGGATAAATAACCAAATTAAAAATTCTA
Found at i:13996591 original size:34 final size:35
Alignment explanation
Indices: 13996547--13996613 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
13996537 CAGTAAAATG
13996547 TTTTCCGTAAAATGATTT-CTGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
13996581 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
13996614 CTGGTGTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:14004971 original size:18 final size:18
Alignment explanation
Indices: 14004948--14004991 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
14004938 CTTCGAAACA
*
14004948 GGAAAGGG-AAGAGGTAGG
1 GGAAAGGGAAAGA-GAAGG
14004966 GGAAAGGGAAAGAGAAGG
1 GGAAAGGGAAAGAGAAGG
14004984 GGAAAGGG
1 GGAAAGGG
14004992 GAGAAGAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 20 0.83
19 4 0.17
ACGTcount: A:0.43, C:0.00, G:0.55, T:0.02
Consensus pattern (18 bp):
GGAAAGGGAAAGAGAAGG
Found at i:14004999 original size:18 final size:18
Alignment explanation
Indices: 14004948--14004999 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
14004938 CTTCGAAACA
* * *
14004948 GGAAAGGGAAGAGGTAGG
1 GGAAAGGGGAGAAGAAGG
*
14004966 GGAAA-GGGAAAGAGAAGG
1 GGAAAGGGGAGA-AGAAGG
14004984 GGAAAGGGGAGAAGAA
1 GGAAAGGGGAGAAGAA
14005000 TGGGTCATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
17 4 0.15
18 18 0.67
19 5 0.19
ACGTcount: A:0.46, C:0.00, G:0.52, T:0.02
Consensus pattern (18 bp):
GGAAAGGGGAGAAGAAGG
Found at i:14010315 original size:491 final size:491
Alignment explanation
Indices: 14009393--14010367 Score: 1941
Period size: 491 Copynumber: 2.0 Consensus size: 491
14009383 TTTTTTAAAG
14009393 AATCAGGGATTGAACACCAGCTCACCAACACCTACACACCTCAGCAAAATGGTGTATGTAATACC
1 AATCAGGGATTGAACACCAGCTCACCAACACCTACACACCTCAGCAAAATGGTGTATGTAATACC
14009458 CCTAACCCATATCCGTCACTAGAACATGGTTATGGCCAAACTATAGATTATGTCCGCCAATAGCC
66 CCTAACCCATATCCGTCACTAGAACATGGTTATGGCCAAACTATAGATTATGTCCGCCAATAGCC
14009523 GGCTTAGAGAGAATGAGGCATTGGCCTCGCCAACTAAGTTGTGAATCCTCTTACGAAATCTAAGA
131 GGCTTAGAGAGAATGAGGCATTGGCCTCGCCAACTAAGTTGTGAATCCTCTTACGAAATCTAAGA
14009588 AGTTTAATTTTGGGCCTAAAATCTCATTTTCTTAATATTTAAGCAATCTTCCATGAATTTTATGT
196 AGTTTAATTTTGGGCCTAAAATCTCATTTTCTTAATATTTAAGCAATCTTCCATGAATTTTATGT
14009653 ATAGATCTCACTAAGCTCTTTTGAATTTATAAAATTATTGCTTGAGTGCAGGGTAGATGAAGATT
261 ATAGATCTCACTAAGCTCTTTTGAATTTATAAAATTATTGCTTGAGTGCAGGGTAGATGAAGATT
14009718 TAAAAATCAAGAGGAGGGACAAAGCCAAGCTCCACCAGTGTTAGTGGTGGGCACGATAGTTGTTT
326 TAAAAATCAAGAGGAGGGACAAAGCCAAGCTCCACCAGTGTTAGTGGTGGGCACGATAGTTGTTT
14009783 CATGTATATAGAAGGGTTTCCTTGGAGGCCACGCCTTAGGGTTTAAGTGATTATGTCAGTAACTG
391 CATGTATATAGAAGGGTTTCCTTGGAGGCCACGCCTTAGGGTTTAAGTGATTATGTCAGTAACTG
*
14009848 GATTTTATTTTGAAACTTTTAACTAGATACGGGCAT
456 GATTTTATTTTGAAACTTTTAAATAGATACGGGCAT
14009884 AATCAGGGATTGAACACCAGCTCACCAACACCTACACACCTCAGCAAAATGGTGTATGTAATACC
1 AATCAGGGATTGAACACCAGCTCACCAACACCTACACACCTCAGCAAAATGGTGTATGTAATACC
14009949 CCTAACCCATATCCGTCACTAGAACATGGTTATGGCCAAACTATAGATTATGTCCGCCAATAGCC
66 CCTAACCCATATCCGTCACTAGAACATGGTTATGGCCAAACTATAGATTATGTCCGCCAATAGCC
14010014 GGCTTAGAGAGAATGAGGCATTGGCCTCGCCAACTAAGTTGTGAATCCTCTTACGAAATCTAAGA
131 GGCTTAGAGAGAATGAGGCATTGGCCTCGCCAACTAAGTTGTGAATCCTCTTACGAAATCTAAGA
14010079 AGTTTAATTTTGGGCCTAAAATCTCATTTTCTTAATATTTAAGCAATCTTCCATGAATTTTATGT
196 AGTTTAATTTTGGGCCTAAAATCTCATTTTCTTAATATTTAAGCAATCTTCCATGAATTTTATGT
14010144 ATAGATCTCACTAAGCTCTTTTGAATTTATAAAATTATTGCTTGAGTGCAGGGTAGATGAAGATT
261 ATAGATCTCACTAAGCTCTTTTGAATTTATAAAATTATTGCTTGAGTGCAGGGTAGATGAAGATT
14010209 TAAAAATCAAGAGGAGGGACAAAGCCAAGCTCCACCAGTGTTAGTGGTGGGCACGATAGTTGTTT
326 TAAAAATCAAGAGGAGGGACAAAGCCAAGCTCCACCAGTGTTAGTGGTGGGCACGATAGTTGTTT
14010274 CATGTATATAGAAGGGTTTCCTTGGAGGCCACGCCTTAGGGTTTAAGTGATTATGTCAGTAACTG
391 CATGTATATAGAAGGGTTTCCTTGGAGGCCACGCCTTAGGGTTTAAGTGATTATGTCAGTAACTG
14010339 GATTTTATTTTGAAACTTTTAAATAGATA
456 GATTTTATTTTGAAACTTTTAAATAGATA
14010368 TGGGAATCAA
Statistics
Matches: 483, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
491 483 1.00
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (491 bp):
AATCAGGGATTGAACACCAGCTCACCAACACCTACACACCTCAGCAAAATGGTGTATGTAATACC
CCTAACCCATATCCGTCACTAGAACATGGTTATGGCCAAACTATAGATTATGTCCGCCAATAGCC
GGCTTAGAGAGAATGAGGCATTGGCCTCGCCAACTAAGTTGTGAATCCTCTTACGAAATCTAAGA
AGTTTAATTTTGGGCCTAAAATCTCATTTTCTTAATATTTAAGCAATCTTCCATGAATTTTATGT
ATAGATCTCACTAAGCTCTTTTGAATTTATAAAATTATTGCTTGAGTGCAGGGTAGATGAAGATT
TAAAAATCAAGAGGAGGGACAAAGCCAAGCTCCACCAGTGTTAGTGGTGGGCACGATAGTTGTTT
CATGTATATAGAAGGGTTTCCTTGGAGGCCACGCCTTAGGGTTTAAGTGATTATGTCAGTAACTG
GATTTTATTTTGAAACTTTTAAATAGATACGGGCAT
Found at i:14011128 original size:57 final size:58
Alignment explanation
Indices: 14011035--14011157 Score: 178
Period size: 57 Copynumber: 2.1 Consensus size: 58
14011025 ATAGAAATTG
*
14011035 TGAAAATGGATAAATGAAAAACATTTAAAAATGAATGT-GATTTTCTCCAAAATAAAAA
1 TGAAAATGGAGAAATGAAAAACATTTAAAAATGAATGTAG-TTTTCTCCAAAATAAAAA
* * * *
14011093 TGAAAATGGAGAAATG-GAATCATTTGAAAATGAATGTAGTTTTCTCCAAAATGAAAA
1 TGAAAATGGAGAAATGAAAAACATTTAAAAATGAATGTAGTTTTCTCCAAAATAAAAA
14011150 TGAAAATG
1 TGAAAATG
14011158 ACCTGGAAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
57 43 0.73
58 16 0.27
ACGTcount: A:0.50, C:0.07, G:0.16, T:0.28
Consensus pattern (58 bp):
TGAAAATGGAGAAATGAAAAACATTTAAAAATGAATGTAGTTTTCTCCAAAATAAAAA
Found at i:14014771 original size:13 final size:13
Alignment explanation
Indices: 14014753--14014798 Score: 83
Period size: 13 Copynumber: 3.5 Consensus size: 13
14014743 TTCTTCATTA
14014753 CTTTTGAGAAGTG
1 CTTTTGAGAAGTG
14014766 CTTTTGAGAAGTG
1 CTTTTGAGAAGTG
*
14014779 CTTTTCAGAAGTG
1 CTTTTGAGAAGTG
14014792 CTTTTGA
1 CTTTTGA
14014799 TAAATTTGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.22, C:0.11, G:0.26, T:0.41
Consensus pattern (13 bp):
CTTTTGAGAAGTG
Found at i:14025819 original size:17 final size:17
Alignment explanation
Indices: 14025793--14025826 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14025783 TAAGAAATCT
14025793 TAAATTT-AAAATAATA
1 TAAATTTAAAAATAATA
14025809 TAAATTTTAAAAATAATA
1 TAAA-TTTAAAAATAATA
14025827 ATATGAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 3 0.19
18 9 0.56
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TAAATTTAAAAATAATA
Found at i:14033983 original size:30 final size:30
Alignment explanation
Indices: 14033920--14033983 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
14033910 ATGTTAATGG
*
14033920 GTGATTGATTTGTCACTTTTCGATACGTTA
1 GTGATTGATTTGTCACTTTTCGATAAGTTA
* *
14033950 GTGATTGATTTGTTATTTTTCGA-AAGTTGA
1 GTGATTGATTTGTCACTTTTCGATAAGTT-A
14033980 GTGA
1 GTGA
14033984 CTAAATTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 4 0.13
30 26 0.87
ACGTcount: A:0.22, C:0.08, G:0.23, T:0.47
Consensus pattern (30 bp):
GTGATTGATTTGTCACTTTTCGATAAGTTA
Found at i:14034353 original size:15 final size:17
Alignment explanation
Indices: 14034333--14034365 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
14034323 TTATTTTTAA
14034333 AAATATA-TAA-AATAT
1 AAATATAGTAAGAATAT
14034348 AAATATAGTAAGAATAT
1 AAATATAGTAAGAATAT
14034365 A
1 A
14034366 TAAATTTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 3 0.19
17 6 0.38
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (17 bp):
AAATATAGTAAGAATAT
Found at i:14036399 original size:22 final size:22
Alignment explanation
Indices: 14036360--14036401 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
14036350 CAAAGCTCAT
* *
14036360 TTATATTTGATGATAATTAAAA
1 TTATATTTGATAACAATTAAAA
*
14036382 TTATATTTTATAACAATTAA
1 TTATATTTGATAACAATTAA
14036402 CAAGGAAGTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (22 bp):
TTATATTTGATAACAATTAAAA
Found at i:14038469 original size:23 final size:22
Alignment explanation
Indices: 14038424--14038517 Score: 67
Period size: 19 Copynumber: 4.5 Consensus size: 22
14038414 AAAAGGTATC
* *
14038424 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
*
14038445 TACAAAATCATATCTTCTAATAT
1 TAC-AAATCATATCTTCTAAGAT
*
14038468 TACATATCATA---TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
* *
14038487 TGCATATCATA---TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
*
14038506 TACATATCATAT
1 TACAAATCATAT
14038518 ATAATATTGC
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
19 35 0.56
21 3 0.05
22 15 0.24
23 10 0.16
ACGTcount: A:0.43, C:0.16, G:0.04, T:0.37
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:14038492 original size:19 final size:19
Alignment explanation
Indices: 14038437--14038534 Score: 106
Period size: 19 Copynumber: 4.9 Consensus size: 19
14038427 AAATTAAATC
*
14038437 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
*
14038457 TCTTCTAATATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
14038479 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
14038498 TCTAAGATTACATATCATA
1 TCTAAGATTACATATCATA
* * *
14038517 TATAATATTGCATATCAT
1 TCTAAGATTACATATCAT
14038535 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
19 50 0.75
22 7 0.10
23 10 0.15
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.39
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:14038508 original size:38 final size:37
Alignment explanation
Indices: 14038453--14038543 Score: 123
Period size: 38 Copynumber: 2.5 Consensus size: 37
14038443 ATTACAAAAT
* *
14038453 CATATC-TTCTAATATTACATATCATATCTAAGATTG
1 CATATCATTCTAAGATTACATATCATATATAAGATTG
*
14038489 CATATCATATCTAAGATTACATATCATATATAATATTG
1 CATATCAT-TCTAAGATTACATATCATATATAAGATTG
*
14038527 CATATCATT-GAAGATTA
1 CATATCATTCTAAGATTA
14038544 TGTTTCCATA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
36 13 0.27
37 2 0.04
38 34 0.69
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.40
Consensus pattern (37 bp):
CATATCATTCTAAGATTACATATCATATATAAGATTG
Found at i:14040565 original size:110 final size:106
Alignment explanation
Indices: 14040268--14040749 Score: 524
Period size: 110 Copynumber: 4.4 Consensus size: 106
14040258 AAAAAATTTA
****
14040268 TTTTATTTTTTTTCGTGTCAGAATCAGATAAAAAATACGAAAAAAATTTAAAAAATTTTTTTTGG
1 TTTTA-TTTTTTTCGTGTCAGAATCAGATAAAAAATACGAAAAAAA--TAAAAAAAAAATTTT-G
14040333 GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGA-
62 GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAA-AT
*** ***** *
14040378 -AAAAAAAAATTCGTGTCAGAATCAGATAAAAAAATACGAAAAAAATTAAAAAAAAATTTTGGGT
1 TTTTATTTTTTTCGTGTCAGAATCAGAT-AAAAAATACGAAAAAAATAAAAAAAAAATTTTGGGT
**
14040442 GCTGGCCTGTCAATGGCCGGCACCCAGTACGTAGTACAAAATTTTT
65 GCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAA----T
* *
14040488 TTTTATTTTTTTTGTATCAGAATCAGATAAAAAATACGAAAAAAATAAAAAAAAAATTTTGGGTG
1 TTTTATTTTTTTCGTGTCAGAATCAGATAAAAAATACGAAAAAAATAAAAAAAAAATTTTGGGTG
*
14040553 CTGGCCTATCAATGGCCGGCACCCAGTACACAGTAC-AAAT
66 CTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAAT
**** ****
14040593 AAAAAAAAATTTCGTGTCAGAATCAGATAAAAAATACGAAAAAAAT-AAAAAAAAA-TTTGGGTG
1 TTTTATTTTTTTCGTGTCAGAATCAGATAAAAAATACGAAAAAAATAAAAAAAAAATTTTGGGTG
*
14040656 CTGACCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAAAT
66 CTGGCCTGTCAATGGCCGGCACCCAGTACACAGTAC-------AAAAT
14040704 TTTTATTTTTTTCGTGTCAGAATCAGATAAAAAAATACGAAAAAAA
1 TTTTATTTTTTTCGTGTCAGAATCAGAT-AAAAAATACGAAAAAAA
14040750 AAATTATATC
Statistics
Matches: 307, Mismatches: 49, Indels: 30
0.80 0.13 0.08
Matches are distributed among these distances:
103 42 0.14
104 9 0.03
105 38 0.12
106 42 0.14
107 10 0.03
108 18 0.06
109 21 0.07
110 69 0.22
111 41 0.13
112 17 0.06
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.26
Consensus pattern (106 bp):
TTTTATTTTTTTCGTGTCAGAATCAGATAAAAAATACGAAAAAAATAAAAAAAAAATTTTGGGTG
CTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAAT
Found at i:14040599 original size:216 final size:216
Alignment explanation
Indices: 14040258--14040749 Score: 738
Period size: 216 Copynumber: 2.3 Consensus size: 216
14040248 AAAAAAGAAA
*
14040258 AAAAAATTTATTTTATTTTTTTTCGTGTCAGAATCAGATAAAAAATACGAAAAAAATTTAAAAAA
1 AAAAAATTTTTTTTATTTTTTTT-GTGTCAGAATCAGATAAAAAATACGAAAAAAA-TTAAAAAA
**** *
14040323 TTTTTTTTGGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAAAAAAT
64 AAAATTTTGGGGTGCTGGCCTATCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAAAAAAT
*
14040388 TCGTGTCAGAATCAGATAAAAAAATACGAAAAAAATTAAAAAAAAATTTTGGGTGCTGGCCTGTC
129 TCGTGTCAGAATCAGAT-AAAAAATACGAAAAAAA-TAAAAAAAAA-TTTGGGTGCTGACCTGTC
**
14040453 AATGGCCGGCACCCAGTACGTAGTAC
191 AATGGCCGGCACCCAGTACACAGTAC
* *
14040479 -AAAATTTTTTTTTATTTTTTTTGTATCAGAATCAGATAAAAAATACGAAAAAAA-TAAAAAAAA
1 AAAAAATTTTTTTTATTTTTTTTGTGTCAGAATCAGATAAAAAATACGAAAAAAATTAAAAAAAA
* *
14040542 AATTTT-GGGTGCTGGCCTATCAATGGCCGGCACCCAGTACACAGTACAAATAAAAAAAAATTTC
66 AATTTTGGGGTGCTGGCCTATCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAAAAAATTC
14040606 GTGTCAGAATCAGATAAAAAATACGAAAAAAATAAAAAAAAATTTGGGTGCTGACCTGTCAATGG
131 GTGTCAGAATCAGATAAAAAATACGAAAAAAATAAAAAAAAATTTGGGTGCTGACCTGTCAATGG
14040671 CCGGCACCCAGTACACAGTAC
196 CCGGCACCCAGTACACAGTAC
*** *
14040692 AAAGAAAAAAATTTTTATTTTTTTCGTGTCAGAATCAGATAAAAAAATACGAAAAAAA
1 -AA-AAAATTTTTTTTATTTTTTTTGTGTCAGAATCAGAT-AAAAAATACGAAAAAAA
14040750 AAATTATATC
Statistics
Matches: 248, Mismatches: 19, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
213 41 0.17
214 10 0.04
215 18 0.07
216 100 0.40
217 28 0.11
219 31 0.12
220 20 0.08
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.26
Consensus pattern (216 bp):
AAAAAATTTTTTTTATTTTTTTTGTGTCAGAATCAGATAAAAAATACGAAAAAAATTAAAAAAAA
AATTTTGGGGTGCTGGCCTATCAATGGCCGGCACCCAGTACACAGTACAAAGAAAAAAAAAATTC
GTGTCAGAATCAGATAAAAAATACGAAAAAAATAAAAAAAAATTTGGGTGCTGACCTGTCAATGG
CCGGCACCCAGTACACAGTAC
Found at i:14041262 original size:114 final size:114
Alignment explanation
Indices: 14040973--14041502 Score: 767
Period size: 114 Copynumber: 4.7 Consensus size: 114
14040963 TCTGACATGA
14040973 AATTTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCC-AAA--TTT
1 AATTTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTT
*
14041035 TTTTTTAATTTTTTCGTATTTTTTATCTGATTCTGACACG-AAAAAAAT
66 TTTTTTATTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAT
14041083 AA-TTTTTTTTCTTTGTACT-CTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAATTT
1 AATTTTTTTTTCTTTGTACTGC-GTACTGGGTGCCGGCCATTGACAGGCCAGCACCC-AAAATTT
14041146 TTTTTTTTATTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAT
64 TTTTTTTTATTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAT
**
14041197 AATTTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCATTCAAAA-TTTT
1 AATTTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTT
**
14041261 TTTTAAATTTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAT
66 TTTTTTA-TTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAT
* * *
14041311 AAAATTTTTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGATAGGCCAGCACCCAAAATTTT
1 -AATTTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTT
*
14041376 TTTTTTTATTTTTTTCGTA-TTTTTATCTGATTCTGACAC-AAAAAACAAA
65 TTTTTTTATTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAA-AAT
*******
14041425 AATAAAAAAAAAT-TTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTT
1 AAT--TTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTT
*
14041489 TTTTTTGT-TTTTTT
64 TTTTTTTTATTTTTT
14041503 CTTTTTCGTA
Statistics
Matches: 382, Mismatches: 24, Indels: 25
0.89 0.06 0.06
Matches are distributed among these distances:
108 1 0.00
109 51 0.13
110 2 0.01
111 3 0.01
113 65 0.17
114 134 0.35
115 116 0.30
116 10 0.03
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.42
Consensus pattern (114 bp):
AATTTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTT
TTTTTTATTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAT
Found at i:14041548 original size:114 final size:112
Alignment explanation
Indices: 14040862--14041503 Score: 502
Period size: 114 Copynumber: 5.7 Consensus size: 112
14040852 CTGACACGAA
* *
14040862 AAAAATAAAAAAAATTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAA
1 AAAAATAAAAAAAA-AT-TTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAA
* *
14040927 ATTTTTTTTTTATTTTTTTCGTATTTTTTATCTGATTCT-GAC-----A-
64 ATTTTTTTTTTATTTTTTTCGTA-TTTTTATCCGATTCTACACAAAAAAC
** *******
14040970 TGAAAT--TTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCC-AAA
1 AAAAATAAAAAAAAAT-TTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAA
* * *
14041032 -TTTTTTTTTAATTTTTTCGTATTTTTTATCTGATTCTGACAC---GAA-
65 TTTTTTTTTTATTTTTTTCGTA-TTTTTATCCGATTCT-ACACAAAAAAC
*******
14041077 AAAAATAATTTTTTTTCTTTGTACT-CTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAA
1 AAAAATAAAAAAAAAT-TTTGTACTGC-GTACTGGGTGCCGGCCATTGACAGGCCAGCACCC-AA
* *
14041141 AATTTTTTTTTTTATTTTTTTCGTATTTTTTATCTGATTCTGACAC--GAAA-
63 AA-TTTTTTTTTTATTTTTTTCGTA-TTTTTATCCGATTCT-ACACAAAAAAC
******* **
14041191 AAAAATAATTTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCATTCAAA
1 AAAAATAA-AAAAAAAT-TTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAA
** * *
14041256 ATTTTTTTTAAATTTTTTTTCGTATTTTTTATCTGATTCTGACAC--GAAA-
64 ATTTTTTTTTTA-TTTTTTTCGTA-TTTTTATCCGATTCT-ACACAAAAAAC
***** * *
14041305 AAAAATAAAATTTTTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGATAGGCCAGCACCCAA
1 AAAAATAAAA--AAAAAT-TTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAA
*
14041370 AATTTTTTTTTTTATTTTTTTCGTATTTTTATCTGATTCTGACACAAAAAAC
63 AA-TTTTTTTTTTATTTTTTTCGTATTTTTATCCGATTCT-ACACAAAAAAC
14041422 AAAAATAAAAAAAAATTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAA-
1 AAAAATAAAAAAAAATTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAT
*
14041486 TTTTTTTTTGTTTTTTTC
66 TTTTTTTTTATTTTTTTC
14041504 TTTTTCGTAT
Statistics
Matches: 477, Mismatches: 36, Indels: 38
0.87 0.07 0.07
Matches are distributed among these distances:
103 36 0.08
104 3 0.01
105 48 0.10
107 5 0.01
108 5 0.01
109 51 0.11
111 3 0.01
112 17 0.04
113 50 0.10
114 124 0.26
115 112 0.23
116 13 0.03
117 10 0.02
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.42
Consensus pattern (112 bp):
AAAAATAAAAAAAAATTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAT
TTTTTTTTTATTTTTTTCGTATTTTTATCCGATTCTACACAAAAAAC
Found at i:14046245 original size:21 final size:22
Alignment explanation
Indices: 14046221--14046264 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
14046211 TTATATATTC
14046221 TTTAGAAATT-TTTTAAAAAAT
1 TTTAGAAATTCTTTTAAAAAAT
* *
14046242 TTTATAATTTCTTTTAAAAAAT
1 TTTAGAAATTCTTTTAAAAAAT
14046264 T
1 T
14046265 AAATCTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (22 bp):
TTTAGAAATTCTTTTAAAAAAT
Found at i:14046295 original size:20 final size:22
Alignment explanation
Indices: 14046253--14046297 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
14046243 TTATAATTTC
14046253 TTTTAAAAAATTAAATCTTTGAA
1 TTTTAAAAAATT-AATCTTTGAA
14046276 TTTTAAAAAATT-AT-TTTGAA
1 TTTTAAAAAATTAATCTTTGAA
14046296 TT
1 TT
14046298 ATTTTGTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.36
21 2 0.09
23 12 0.55
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.49
Consensus pattern (22 bp):
TTTTAAAAAATTAATCTTTGAA
Found at i:14046301 original size:23 final size:23
Alignment explanation
Indices: 14046227--14046302 Score: 56
Period size: 23 Copynumber: 3.4 Consensus size: 23
14046217 ATTCTTTAGA
*
14046227 AATT-TTTTAAAAAATT-TTAT-
1 AATTATTTTAAAAAATTATTTTG
*
14046247 AATTTCTTTTAAAAAATTAAATCTTTG
1 AA-TTATTTTAAAAAATT--AT-TTTG
14046274 -A--ATTTTAAAAAATTATTTTG
1 AATTATTTTAAAAAATTATTTTG
14046294 AATTATTTT
1 AATTATTTT
14046303 GTAATTTTTC
Statistics
Matches: 44, Mismatches: 2, Indels: 17
0.70 0.03 0.27
Matches are distributed among these distances:
20 6 0.14
21 5 0.11
22 12 0.27
23 17 0.39
25 1 0.02
26 3 0.07
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (23 bp):
AATTATTTTAAAAAATTATTTTG
Found at i:14058779 original size:13 final size:13
Alignment explanation
Indices: 14058744--14058781 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
14058734 ACCCATTAAG
14058744 ATATAATTAAAAA
1 ATATAATTAAAAA
14058757 AT-T-ATGTAAAAA
1 ATATAAT-TAAAAA
14058769 ATATAATTAAAAA
1 ATATAATTAAAAA
14058782 TTATTTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
11 2 0.09
12 9 0.41
13 9 0.41
14 2 0.09
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (13 bp):
ATATAATTAAAAA
Found at i:14062966 original size:271 final size:271
Alignment explanation
Indices: 14062483--14063035 Score: 953
Period size: 271 Copynumber: 2.0 Consensus size: 271
14062473 CTGCAGCAGT
* * *
14062483 AGCACTTGAACTTGTCCTATAAGAAAAATAACCAAAAGTGGAAACATTATAAAGAAGTTAAACCA
1 AGCACTTGAACTCGTCCTATAAGAAAAACAAACAAAAGTGGAAACATTATAAAGAAGTTAAACCA
*
14062548 AAAACTATTTCATACATTCAATAAGAAATTTAACAACATTTTTATTGAAGACTTCTTAAAGAATA
66 AAAACTATTTCATACATTCAATAAGAAATTTAACAACATTTTTATTGAAGACTGCTTAAAGAATA
* * *
14062613 TAGAAGAAATAATAACATTTTTAGTAAAGAAATACAGAGACGATAATAACATGCACAAGGGTGCT
131 TAGAAGAAACAATAACATTTTTAGTAAAGAAATACAGAGACGATAATAACAAGCACAAGGATGCT
14062678 ACCCTGTAAACAGTAAAGAGGTACAAAGGAATAGTTCCTATAGTCTAAAACATCAAAAGGCTCTA
196 ACCCTGTAAACAGTAAAGAGGTACAAAGGAATAGTTCCTATAGTCTAAAACATCAAAAGGCTCTA
14062743 AAAATGTTTCA
261 AAAATGTTTCA
* * **
14062754 AGCACTTGAACTCGTCCTATAAGAAAAACAAACAAAAGTGGAGACATTATACAGAAGTTATGCCA
1 AGCACTTGAACTCGTCCTATAAGAAAAACAAACAAAAGTGGAAACATTATAAAGAAGTTAAACCA
* * *
14062819 AAAACTATTTTATACATTCAATAAGAAATTTCACAACATTTTTATTGAAGACTGCTTAAAGAATT
66 AAAACTATTTCATACATTCAATAAGAAATTTAACAACATTTTTATTGAAGACTGCTTAAAGAATA
* *
14062884 TAGAAGAAACAATACCATTTTTAGTAAAGAAATACAGAGACGATACTAACAAGCACAAGGATGCT
131 TAGAAGAAACAATAACATTTTTAGTAAAGAAATACAGAGACGATAATAACAAGCACAAGGATGCT
14062949 ACCCTGTAAACAGTAAAGAGGTACAAAGGAATAGTTCCTATAGTCTAAAACATCAAAAGGCTCTA
196 ACCCTGTAAACAGTAAAGAGGTACAAAGGAATAGTTCCTATAGTCTAAAACATCAAAAGGCTCTA
14063014 AAAATGTTTCA
261 AAAATGTTTCA
*
14063025 AGCACTAGAAC
1 AGCACTTGAAC
14063036 CTCCAAAAAT
Statistics
Matches: 265, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
271 265 1.00
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (271 bp):
AGCACTTGAACTCGTCCTATAAGAAAAACAAACAAAAGTGGAAACATTATAAAGAAGTTAAACCA
AAAACTATTTCATACATTCAATAAGAAATTTAACAACATTTTTATTGAAGACTGCTTAAAGAATA
TAGAAGAAACAATAACATTTTTAGTAAAGAAATACAGAGACGATAATAACAAGCACAAGGATGCT
ACCCTGTAAACAGTAAAGAGGTACAAAGGAATAGTTCCTATAGTCTAAAACATCAAAAGGCTCTA
AAAATGTTTCA
Found at i:14066564 original size:9 final size:9
Alignment explanation
Indices: 14066550--14066574 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
14066540 ATAATATTAA
14066550 ATTTTATTT
1 ATTTTATTT
14066559 ATTTTATTT
1 ATTTTATTT
14066568 ATTTTAT
1 ATTTTAT
14066575 CTCCTTCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
ATTTTATTT
Found at i:14070292 original size:9 final size:9
Alignment explanation
Indices: 14070274--14070331 Score: 73
Period size: 9 Copynumber: 6.4 Consensus size: 9
14070264 TTTGGTTAAA
14070274 AATTAACCG
1 AATTAACCG
*
14070283 AATTACCCG
1 AATTAACCG
*
14070292 AATTAACTG
1 AATTAACCG
14070301 AATT-ACCTG
1 AATTAACC-G
*
14070310 AATTACCCG
1 AATTAACCG
14070319 AATTAACCG
1 AATTAACCG
14070328 AATT
1 AATT
14070332 GAATCATACA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 2 0.05
9 37 0.90
10 2 0.05
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:14070312 original size:27 final size:27
Alignment explanation
Indices: 14070274--14070331 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 27
14070264 TTTGGTTAAA
*
14070274 AATTAACCGAATTACCCGAATTAACTG
1 AATTAACCGAATTACCCGAATTAACCG
14070301 AATT-ACCTGAATTACCCGAATTAACCG
1 AATTAACC-GAATTACCCGAATTAACCG
14070328 AATT
1 AATT
14070332 GAATCATACA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 3 0.10
27 26 0.90
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (27 bp):
AATTAACCGAATTACCCGAATTAACCG
Found at i:14070381 original size:6 final size:6
Alignment explanation
Indices: 14070370--14070398 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
14070360 ACTTTTATAC
14070370 TTTAGT TTTAGT TTTAGT TTTAGT TTTAG
1 TTTAGT TTTAGT TTTAGT TTTAGT TTTAG
14070399 AATTTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.66
Consensus pattern (6 bp):
TTTAGT
Done.