Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 43 of 226
Found at i:14562556 original size:12 final size:12
Alignment explanation
Indices: 14562507--14562554 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
14562497 ATTCCCACTC
*
14562507 ATAATAATAATA
1 ATAATACTAATA
14562519 ATAATACTAATA
1 ATAATACTAATA
14562531 ATAATACTAATA
1 ATAATACTAATA
* *
14562543 CTAATATTAATA
1 ATAATACTAATA
14562555 CTTACCTCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATACTAATA
Found at i:14563279 original size:16 final size:16
Alignment explanation
Indices: 14563260--14563293 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14563250 TTCTTTGTTC
14563260 TTTCTATTCTGTTTCT
1 TTTCTATTCTGTTTCT
* *
14563276 TTTCTGTTTTGTTTCT
1 TTTCTATTCTGTTTCT
14563292 TT
1 TT
14563294 ATATATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.03, C:0.15, G:0.09, T:0.74
Consensus pattern (16 bp):
TTTCTATTCTGTTTCT
Found at i:14563367 original size:28 final size:29
Alignment explanation
Indices: 14563296--14563359 Score: 76
Period size: 31 Copynumber: 2.2 Consensus size: 29
14563286 GTTTCTTTAT
*
14563296 ATATAATAATATAATATTTATAATGTAATTA
1 ATATAATAATAT-A-CTTTATAATGTAATTA
* *
14563327 ATTTAATAATATACTTTATAAT-TAATTT
1 ATATAATAATATACTTTATAATGTAATTA
14563355 ATATA
1 ATATA
14563360 TTTATATAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 9 0.31
29 8 0.28
30 1 0.03
31 11 0.38
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (29 bp):
ATATAATAATATACTTTATAATGTAATTA
Found at i:14564872 original size:44 final size:44
Alignment explanation
Indices: 14564819--14564905 Score: 165
Period size: 44 Copynumber: 2.0 Consensus size: 44
14564809 TGAACACTGC
*
14564819 ACCAATGGATACATCATTTTTTACTGGTGGTGCTAACACCATAA
1 ACCAATGGATACATCATTTGTTACTGGTGGTGCTAACACCATAA
14564863 ACCAATGGATACATCATTTGTTACTGGTGGTGCTAACACCATA
1 ACCAATGGATACATCATTTGTTACTGGTGGTGCTAACACCATA
14564906 CACCCAAACC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (44 bp):
ACCAATGGATACATCATTTGTTACTGGTGGTGCTAACACCATAA
Found at i:14564982 original size:91 final size:89
Alignment explanation
Indices: 14564863--14565045 Score: 294
Period size: 91 Copynumber: 2.0 Consensus size: 89
14564853 AACACCATAA
14564863 ACCAATGGATACATCATTTGTTACTGGTGGTGCTAACACCATACACCCAAACCAAATTTGGCCTA
1 ACCAATGGATACATCATTTGTTACTGGTGGTGCTAACACCATACACCCAAACCAAATTTGGCCTA
* *
14564928 AACTCGATCTATGAACACTCACTGC
66 AACCCAATCTATGAACACTCAC-GC
* * *
14564953 ACCAGTGGATACATTATTTTGTTACTGGTGGTGCTAACACCATACACCCAAACCCAATTTGGCCT
1 ACCAATGGATACATCA-TTTGTTACTGGTGGTGCTAACACCATACACCCAAACCAAATTTGGCCT
*
14565018 AAACCCAATCTATGAACGCTCACGC
65 AAACCCAATCTATGAACACTCACGC
14565043 ACC
1 ACC
14565046 CATTTAAACT
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
90 19 0.22
91 67 0.78
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (89 bp):
ACCAATGGATACATCATTTGTTACTGGTGGTGCTAACACCATACACCCAAACCAAATTTGGCCTA
AACCCAATCTATGAACACTCACGC
Found at i:14587179 original size:7 final size:7
Alignment explanation
Indices: 14587167--14587197 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
14587157 GTGATGGTAT
14587167 ATATTTG
1 ATATTTG
14587174 ATATTTG
1 ATATTTG
14587181 ATATTTG
1 ATATTTG
*
14587188 ATATGTG
1 ATATTTG
14587195 ATA
1 ATA
14587198 AGTATTGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (7 bp):
ATATTTG
Found at i:14597345 original size:33 final size:33
Alignment explanation
Indices: 14597303--14597370 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
14597293 GGATTCAGAA
*
14597303 TAACATTATTCACTGTGTCACATTTACAAATAC
1 TAACATTATTCACTATGTCACATTTACAAATAC
14597336 TAACATTATTCACTATGTCACATTTACAAATAC
1 TAACATTATTCACTATGTCACATTTACAAATAC
14597369 TA
1 TA
14597371 GAAGTGAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.38, C:0.21, G:0.04, T:0.37
Consensus pattern (33 bp):
TAACATTATTCACTATGTCACATTTACAAATAC
Found at i:14599424 original size:183 final size:183
Alignment explanation
Indices: 14599116--14599481 Score: 723
Period size: 183 Copynumber: 2.0 Consensus size: 183
14599106 AGATGGATAA
14599116 CTAACGATGAAAAAGAGACATATTATACACTTAAAAAAATTCAGAATATCTCACCAAGCTCCATG
1 CTAACGATGAAAAAGAGACATATTATACACTTAAAAAAATTCAGAATATCTCACCAAGCTCCATG
14599181 ATTCAAAAAGCTGTACCGGAGTGTACTCAATACCCAGTGATTCTCAAACTCTGGATTGAAAAACA
66 ATTCAAAAAGCTGTACCGGAGTGTACTCAATACCCAGTGATTCTCAAACTCTGGATTGAAAAACA
14599246 TAGATGCTAAAATAAACTATTTTCTAAAGCTTCTCATTACTTTATAACATGCC
131 TAGATGCTAAAATAAACTATTTTCTAAAGCTTCTCATTACTTTATAACATGCC
14599299 CTAACGATGAAAAAGAGACATATTATACACTTAAAAAAATTCAGAATATCTCACCAAGCTCCATG
1 CTAACGATGAAAAAGAGACATATTATACACTTAAAAAAATTCAGAATATCTCACCAAGCTCCATG
*
14599364 ATTCAAAAAGCTGTACCGGAGTGTACTCAGTACCCAGTGATTCTCAAACTCTGGATTGAAAAACA
66 ATTCAAAAAGCTGTACCGGAGTGTACTCAATACCCAGTGATTCTCAAACTCTGGATTGAAAAACA
14599429 TAGATGCTAAAATAAACTATTTTCTAAAGCTTCTCATTACTTTATAACATGCC
131 TAGATGCTAAAATAAACTATTTTCTAAAGCTTCTCATTACTTTATAACATGCC
14599482 TAGGAAATAT
Statistics
Matches: 182, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
183 182 1.00
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (183 bp):
CTAACGATGAAAAAGAGACATATTATACACTTAAAAAAATTCAGAATATCTCACCAAGCTCCATG
ATTCAAAAAGCTGTACCGGAGTGTACTCAATACCCAGTGATTCTCAAACTCTGGATTGAAAAACA
TAGATGCTAAAATAAACTATTTTCTAAAGCTTCTCATTACTTTATAACATGCC
Found at i:14602137 original size:20 final size:20
Alignment explanation
Indices: 14602114--14602152 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14602104 TTTAAAATTG
14602114 AGATGCCATGCCTAAATTTT
1 AGATGCCATGCCTAAATTTT
** *
14602134 AGATGTGATTCCTAAATTT
1 AGATGCCATGCCTAAATTT
14602153 ATCCATTTTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (20 bp):
AGATGCCATGCCTAAATTTT
Found at i:14602600 original size:14 final size:15
Alignment explanation
Indices: 14602581--14602616 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
14602571 CCTAACAATA
14602581 TTTTTTATC-TTTCT
1 TTTTTTATCTTTTCT
14602595 TTTTTTATCTTTTTCT
1 TTTTTTATC-TTTTCT
14602611 TTTTTT
1 TTTTTT
14602617 GTTGGGGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 9 0.45
16 11 0.55
ACGTcount: A:0.06, C:0.11, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTTATCTTTTCT
Found at i:14603502 original size:26 final size:25
Alignment explanation
Indices: 14603473--14603522 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
14603463 AATAGTGTTT
14603473 CTCTAAA-AAATACATAAAAATTAATC
1 CTCTAAATAAA-A-ATAAAAATTAATC
*
14603499 CTCTAAATTAAAATAAAAATTAAT
1 CTCTAAATAAAAATAAAAATTAAT
14603523 AATTTCATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 12 0.55
26 8 0.36
27 2 0.09
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (25 bp):
CTCTAAATAAAAATAAAAATTAATC
Found at i:14612451 original size:22 final size:21
Alignment explanation
Indices: 14612416--14612468 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
14612406 ACCTAATTTT
14612416 TTTTCTTCTTTTCCTTCCTTC
1 TTTTCTTCTTTTCCTTCCTTC
14612437 TTTTCTTCTTCTTCCTTCCTTC
1 TTTTCTTCTT-TTCCTTCCTTC
*
14612459 TTAT-TTCTTT
1 TTTTCTTCTTT
14612469 CGTTTCTGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 1 0.03
21 15 0.50
22 14 0.47
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTTCTTCTTTTCCTTCCTTC
Found at i:14612564 original size:27 final size:28
Alignment explanation
Indices: 14612526--14612601 Score: 113
Period size: 27 Copynumber: 2.8 Consensus size: 28
14612516 AAAATAACAG
*
14612526 CATTGGCGCCTCTCAGAAT-GGCACCAC
1 CATTGGCGCCTCCCAGAATAGGCACCAC
*
14612553 CATTGGCGCCTCCCAG-GTAGGCACCAC
1 CATTGGCGCCTCCCAGAATAGGCACCAC
14612580 CATTGGCGCCTCCCAG-ATAGGC
1 CATTGGCGCCTCCCAGAATAGGC
14612602 GCCAATACTA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 1 0.02
27 44 0.98
ACGTcount: A:0.20, C:0.38, G:0.25, T:0.17
Consensus pattern (28 bp):
CATTGGCGCCTCCCAGAATAGGCACCAC
Found at i:14613909 original size:29 final size:30
Alignment explanation
Indices: 14613865--14613923 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
14613855 TTTAATATAA
14613865 TTATAAATATATATAATTATTATT-TAACAT
1 TTATAAATATATATAA-TATTATTATAACAT
* *
14613895 TTATAATTA-ATATAATATTTTTATAACAT
1 TTATAAATATATATAATATTATTATAACAT
14613924 AATATATTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 6 0.23
29 12 0.46
30 8 0.31
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (30 bp):
TTATAAATATATATAATATTATTATAACAT
Found at i:14617974 original size:39 final size:39
Alignment explanation
Indices: 14617919--14618023 Score: 185
Period size: 39 Copynumber: 2.7 Consensus size: 39
14617909 ATAAATATTT
*
14617919 TTTTATTTTTATTTTTTAATTTTAAAATTCTTTTAAAATA
1 TTTT-TTTTTATTTTTTATTTTTAAAATTCTTTTAAAATA
14617959 TTTTTTTTTATTTTTTATTTTTAAAATTCTTTTAAAATA
1 TTTTTTTTTATTTTTTATTTTTAAAATTCTTTTAAAATA
14617998 -TTTTTTTTATTTTTTATTTTTAAAAT
1 TTTTTTTTTATTTTTTATTTTTAAAAT
14618024 ATTTTTTTTG
Statistics
Matches: 64, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
38 26 0.41
39 34 0.53
40 4 0.06
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.70
Consensus pattern (39 bp):
TTTTTTTTTATTTTTTATTTTTAAAATTCTTTTAAAATA
Found at i:14618039 original size:26 final size:27
Alignment explanation
Indices: 14617988--14618041 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
14617978 TTTAAAATTC
* *
14617988 TTTTAAAATATTTTTTTTATTTTTTAT
1 TTTTAAAATATTTTTTTTAGTGTTTAT
14618015 TTTTAAAATATTTTTTTT-GTGTTTAT
1 TTTTAAAATATTTTTTTTAGTGTTTAT
14618041 T
1 T
14618042 AAAAATCGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (27 bp):
TTTTAAAATATTTTTTTTAGTGTTTAT
Found at i:14622262 original size:40 final size:41
Alignment explanation
Indices: 14622205--14622294 Score: 94
Period size: 42 Copynumber: 2.2 Consensus size: 41
14622195 TCCTCATAGG
*
14622205 CGCGATTTGTGTCCACGT-AATCAAAACGCGCTGACGTGGA
1 CGCGATTTGTGTACACGTCAATCAAAACGCGCTGACGTGGA
** * * *
14622245 CGCGATTTGCTG-ACACGTCCCCTGACATCGCGCTGACGTGGA
1 CGCGATTTG-TGTACACGT-CAATCAAAACGCGCTGACGTGGA
14622287 CGCGATTT
1 CGCGATTT
14622295 CGAGAAAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
40 14 0.34
41 2 0.05
42 25 0.61
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (41 bp):
CGCGATTTGTGTACACGTCAATCAAAACGCGCTGACGTGGA
Found at i:14625142 original size:15 final size:17
Alignment explanation
Indices: 14625107--14625144 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
14625097 CCATATTTGA
*
14625107 AATAAAAAATTAATCTT
1 AATATAAAATTAATCTT
14625124 AATATAAAA-TAAT-TT
1 AATATAAAATTAATCTT
14625139 AATATA
1 AATATA
14625145 TTTGATTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 8 0.40
16 4 0.20
17 8 0.40
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (17 bp):
AATATAAAATTAATCTT
Found at i:14630676 original size:17 final size:18
Alignment explanation
Indices: 14630654--14630695 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
14630644 ATTAAAAGTC
*
14630654 TAAAAATATATATTT-AA
1 TAAAAATACATATTTGAA
*
14630671 TAAAAA-ACATATTTGAT
1 TAAAAATACATATTTGAA
14630688 TAAAAATA
1 TAAAAATA
14630696 AAAAAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 7 0.33
17 13 0.62
18 1 0.05
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (18 bp):
TAAAAATACATATTTGAA
Found at i:14639531 original size:22 final size:24
Alignment explanation
Indices: 14639505--14639548 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
14639495 AAAAAATATT
14639505 AAATAT-ATA-TTTTTTATTTTTA
1 AAATATAATAGTTTTTTATTTTTA
14639527 AAATATAATAGTTTTTTATTTT
1 AAATATAATAGTTTTTTATTTT
14639549 AAGTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.30
23 3 0.15
24 11 0.55
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
AAATATAATAGTTTTTTATTTTTA
Found at i:14639642 original size:59 final size:64
Alignment explanation
Indices: 14639579--14639756 Score: 176
Period size: 68 Copynumber: 2.8 Consensus size: 64
14639569 CCTTGACTAG
14639579 TGTTACAA-AA-TAATAA-TAATA-AAAT-ATCAAGTTTG-T-TTTACTAATCAAATGTTAGATT
1 TGTTACAACAATTAATAATTAATACAAATAAT-AA-TTTGATATTTACTAATCAAATGTTAGATT
14639637 T
64 T
*
14639638 TGTTACAACAATTAATACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGA
1 TGTTACAACAATTAAT--AATTAATACAAATAATAATTTGAT--ATTTACTAATCAAATGTTAGA
14639703 TTT
62 TTT
* *
14639706 TATTACAACAATTAATACAATT-A-ACAATTAATAATTTGATAATTTTACTAA
1 TGTTACAACAATTAAT--AATTAATACAAATAATAATTTGAT-A-TTTACTAA
14639757 CAATTAATTT
Statistics
Matches: 105, Mismatches: 2, Indels: 17
0.85 0.02 0.14
Matches are distributed among these distances:
59 8 0.08
60 2 0.02
61 4 0.04
63 2 0.02
64 9 0.09
65 8 0.08
66 27 0.26
67 1 0.01
68 44 0.42
ACGTcount: A:0.46, C:0.08, G:0.06, T:0.40
Consensus pattern (64 bp):
TGTTACAACAATTAATAATTAATACAAATAATAATTTGATATTTACTAATCAAATGTTAGATTT
Found at i:14639659 original size:9 final size:9
Alignment explanation
Indices: 14639645--14639672 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
14639635 TTTTGTTACA
14639645 ACAATTAAT
1 ACAATTAAT
14639654 ACAATTAAT
1 ACAATTAAT
14639663 ACAATTAAT
1 ACAATTAAT
14639672 A
1 A
14639673 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:14639694 original size:68 final size:66
Alignment explanation
Indices: 14639615--14639756 Score: 248
Period size: 68 Copynumber: 2.1 Consensus size: 66
14639605 TCAAGTTTGT
*
14639615 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
14639680 AAA
64 AAA
14639683 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAA
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAA
*
14639748 T
66 A
14639749 TTTACTAA
1 TTTACTAA
14639757 CAATTAATTT
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
66 27 0.38
67 1 0.01
68 44 0.61
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (66 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAA
A
Found at i:14639766 original size:16 final size:16
Alignment explanation
Indices: 14639745--14639786 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
14639735 AATAATTTGA
*
14639745 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
14639761 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
14639777 TAGTTTTAAT
1 TAATTTTAAT
14639787 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:14639770 original size:22 final size:23
Alignment explanation
Indices: 14639760--14639815 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
14639750 TTACTAACAA
* * *
14639760 TTAATTTTAAT-AACAATTAGTT
1 TTAATTTTAATAAAAAAATAATT
*
14639782 TTAATTTTATTAAAAAAATAATT
1 TTAATTTTAATAAAAAAATAATT
14639805 TTAATTTTAAT
1 TTAATTTTAAT
14639816 TTTAATTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
TTAATTTTAATAAAAAAATAATT
Found at i:14639775 original size:59 final size:66
Alignment explanation
Indices: 14639615--14639778 Score: 216
Period size: 68 Copynumber: 2.5 Consensus size: 66
14639605 TCAAGTTTGT
*
14639615 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAA-GTTAGATTTT-ATACAACAATTAATACAATTAATACAATTAATAATTTGAT
14639680 AAA
64 AAA
14639683 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
1 TTTACTAATCAAA-GTTAGATTTTA-TACAACAATTAATACAATTAATACAATTAATAATTTGAT
*
14639746 AAT
64 AAA
*
14639749 TTTACTAA-C-AA-TTA-ATTTTA-ATAACAATTA
1 TTTACTAATCAAAGTTAGATTTTATACAACAATTA
14639779 GTTTTAATTT
Statistics
Matches: 92, Mismatches: 3, Indels: 11
0.87 0.03 0.10
Matches are distributed among these distances:
59 9 0.10
61 6 0.07
62 3 0.03
64 2 0.02
65 1 0.01
66 27 0.29
67 1 0.01
68 43 0.47
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (66 bp):
TTTACTAATCAAAGTTAGATTTTATACAACAATTAATACAATTAATACAATTAATAATTTGATAA
A
Found at i:14640529 original size:21 final size:20
Alignment explanation
Indices: 14640490--14640531 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
14640480 TTAATTTTAC
14640490 TCATATTTTAAATATAAATT
1 TCATATTTTAAATATAAATT
14640510 TCAT-TTTTAAACTCATAAATT
1 TCATATTTTAAA-T-ATAAATT
14640531 T
1 T
14640532 TTTTTCTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 5 0.25
21 8 0.40
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (20 bp):
TCATATTTTAAATATAAATT
Found at i:14640535 original size:19 final size:18
Alignment explanation
Indices: 14640495--14640536 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 18
14640485 TTTACTCATA
14640495 TTTTAAATATAAATTTCAT
1 TTTTAAATATAAATTT-AT
14640514 TTTTAAACTCATAAATTT-T
1 TTTTAAA-T-ATAAATTTAT
14640533 TTTT
1 TTTT
14640537 CTCAAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 12 0.57
20 1 0.05
21 8 0.38
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTTAAATATAAATTTAT
Found at i:14643607 original size:14 final size:15
Alignment explanation
Indices: 14643588--14643616 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14643578 CTTTAATAAA
14643588 TAAAAT-TTTAAAGG
1 TAAAATATTTAAAGG
14643602 TAAAATATTTAAAGG
1 TAAAATATTTAAAGG
14643617 ATCATGTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (15 bp):
TAAAATATTTAAAGG
Found at i:14649636 original size:17 final size:17
Alignment explanation
Indices: 14649597--14649639 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
14649587 GAAAAAAATC
*
14649597 AATTTAATGAATTAAAA
1 AATTTAATTAATTAAAA
*
14649614 ATTTTAATTAA-TAAACA
1 AATTTAATTAATTAAA-A
14649631 AATTTAATT
1 AATTTAATT
14649640 TAGACTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (17 bp):
AATTTAATTAATTAAAA
Found at i:14651779 original size:46 final size:46
Alignment explanation
Indices: 14651727--14651871 Score: 247
Period size: 46 Copynumber: 3.2 Consensus size: 46
14651717 TACTTATCCC
*
14651727 TGATCAGATAAGTGTAGCTAAGGCTACCACTTATCACTTTGTCACT
1 TGATCAGATAAGTGTAGCTAAGGCTACCACTTATCATTTTGTCACT
14651773 TGATCAGATAAGTGTAGCTAAGGCTACCACTTATCATTTTGTCACT
1 TGATCAGATAAGTGTAGCTAAGGCTACCACTTATCATTTTGTCACT
* * *
14651819 TGATCTGATAAGTGTAGCTAAAGCTAACACTTATCATTTTGTCA-T
1 TGATCAGATAAGTGTAGCTAAGGCTACCACTTATCATTTTGTCACT
14651864 TGATCAGA
1 TGATCAGA
14651872 AGTACTCAAA
Statistics
Matches: 94, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
45 8 0.09
46 86 0.91
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (46 bp):
TGATCAGATAAGTGTAGCTAAGGCTACCACTTATCATTTTGTCACT
Found at i:14655710 original size:24 final size:25
Alignment explanation
Indices: 14655683--14655732 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
14655673 AACAAATGAT
14655683 TGTATAT-ATTT-TTCTTAGATTAAA
1 TGTATATAATTTGTTCTTA-ATTAAA
*
14655707 TGTATATAATTTGTTTTTAATTAAA
1 TGTATATAATTTGTTCTTAATTAAA
14655732 T
1 T
14655733 TTTATACAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 7 0.30
25 11 0.48
26 5 0.22
ACGTcount: A:0.34, C:0.02, G:0.08, T:0.56
Consensus pattern (25 bp):
TGTATATAATTTGTTCTTAATTAAA
Found at i:14660705 original size:32 final size:32
Alignment explanation
Indices: 14660669--14660733 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
14660659 TTGGCAACTC
14660669 GATCTTGGTCCGCGTGCAACCCCGTATCATTT
1 GATCTTGGTCCGCGTGCAACCCCGTATCATTT
14660701 GATCTTGGTCCGCGTGCAACCCCGTATCATTT
1 GATCTTGGTCCGCGTGCAACCCCGTATCATTT
14660733 G
1 G
14660734 GGGTGTGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.15, C:0.31, G:0.23, T:0.31
Consensus pattern (32 bp):
GATCTTGGTCCGCGTGCAACCCCGTATCATTT
Found at i:14668637 original size:59 final size:59
Alignment explanation
Indices: 14668545--14668661 Score: 189
Period size: 59 Copynumber: 2.0 Consensus size: 59
14668535 ATATACATAT
* *
14668545 TTTTGTTTTAGTTATATTTATTGTAATCACTAACGTTATTGAAATTTAATACTCCTTCG
1 TTTTGTTTTAGTAATATTTATTGTAATCACTAACATTATTGAAATTTAATACTCCTTCG
* * *
14668604 TTTTGTTTTAGTAATTTTTATTGTAATCACTAACATTGTTTAAATTTAATACTCCTTC
1 TTTTGTTTTAGTAATATTTATTGTAATCACTAACATTATTGAAATTTAATACTCCTTC
14668662 ATTAAATCAT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.27, C:0.12, G:0.09, T:0.52
Consensus pattern (59 bp):
TTTTGTTTTAGTAATATTTATTGTAATCACTAACATTATTGAAATTTAATACTCCTTCG
Found at i:14669634 original size:18 final size:20
Alignment explanation
Indices: 14669597--14669640 Score: 65
Period size: 18 Copynumber: 2.3 Consensus size: 20
14669587 AAAATAAACA
*
14669597 TTTAAATAATTATTTTTATT
1 TTTAAATAATTATTTGTATT
14669617 TTTAAAT-ATT-TTTGTATT
1 TTTAAATAATTATTTGTATT
14669635 TTTAAA
1 TTTAAA
14669641 AAGTAAAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 13 0.57
19 3 0.13
20 7 0.30
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
TTTAAATAATTATTTGTATT
Found at i:14686306 original size:10 final size:9
Alignment explanation
Indices: 14686287--14686329 Score: 54
Period size: 8 Copynumber: 4.9 Consensus size: 9
14686277 TTTTATTTTT
14686287 AAAA-ATTA
1 AAAATATTA
14686295 AAAATCATTA
1 AAAAT-ATTA
*
14686305 AAATTATTA
1 AAAATATTA
14686314 AAAATA-TA
1 AAAATATTA
14686322 AAAATATT
1 AAAATATT
14686330 TTTAAATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
8 12 0.40
9 10 0.33
10 8 0.27
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (9 bp):
AAAATATTA
Found at i:14688169 original size:49 final size:49
Alignment explanation
Indices: 14688039--14688172 Score: 144
Period size: 49 Copynumber: 2.7 Consensus size: 49
14688029 ATGAAACTCG
* ** * * *
14688039 AACTCGTGACCGCAAAGTCACTGTCAACTAGGG-TCCCGAGTTATACTTC
1 AACTTGTGACCGCAAAACCACCGTCAACT-GGGAGCCCTAGTTATACTTC
* * *
14688088 AACTTGTGACCGCAAAATCGCCGTCAATTGGGAGCCCTAGTTATACTTC
1 AACTTGTGACCGCAAAACCACCGTCAACTGGGAGCCCTAGTTATACTTC
* * *
14688137 AACTTGTGACCGTATAACCACCGTGAACTGGGAGCC
1 AACTTGTGACCGCAAAACCACCGTCAACTGGGAGCC
14688173 TGAGTTGAAA
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
48 3 0.04
49 68 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (49 bp):
AACTTGTGACCGCAAAACCACCGTCAACTGGGAGCCCTAGTTATACTTC
Found at i:14689664 original size:3 final size:3
Alignment explanation
Indices: 14689656--14689683 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
14689646 CTCACGCCAC
14689656 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
14689684 CAACAACAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:14689776 original size:21 final size:21
Alignment explanation
Indices: 14689738--14689777 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14689728 ACAAAGTAAT
*
14689738 TAAATAACGAGGACTAAAATG
1 TAAATAACGAAGACTAAAATG
14689759 TAAATAACGAAAGA-TAAAA
1 TAAATAACG-AAGACTAAAA
14689778 AGGCTGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.60, C:0.07, G:0.15, T:0.17
Consensus pattern (21 bp):
TAAATAACGAAGACTAAAATG
Found at i:14701952 original size:13 final size:13
Alignment explanation
Indices: 14701929--14701981 Score: 79
Period size: 13 Copynumber: 4.1 Consensus size: 13
14701919 AGTTCTTCAT
14701929 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
14701942 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
14701955 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
14701968 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
14701981 T
1 T
14701982 TTGATTTAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.28, C:0.08, G:0.28, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:14714100 original size:18 final size:17
Alignment explanation
Indices: 14714074--14714108 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14714064 TTTCTCAACA
14714074 AAAATTTTAAAAAAATT
1 AAAATTTTAAAAAAATT
*
14714091 AAAATATTTATAAAAATT
1 AAAAT-TTTAAAAAAATT
14714109 TTAAATCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
AAAATTTTAAAAAAATT
Found at i:14729109 original size:26 final size:25
Alignment explanation
Indices: 14729080--14729130 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
14729070 TAAAAGAATA
*
14729080 TTAACAAAATAAAATGACTAAATTTT
1 TTAA-AAAATAAAAGGACTAAATTTT
*
14729106 TTAAGAAATAAAAGGACTAAATTTT
1 TTAAAAAATAAAAGGACTAAATTTT
14729131 AAATATATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.33
Consensus pattern (25 bp):
TTAAAAAATAAAAGGACTAAATTTT
Found at i:14730369 original size:29 final size:31
Alignment explanation
Indices: 14730322--14730389 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 31
14730312 TTATAAATTT
14730322 GGAATTTAGTTTATATATTTTT-A-TTTTTA
1 GGAATTTAGTTTATATATTTTTCAGTTTTTA
*
14730351 GGAATTTAGTCTT-TTTATTTTTCAGTTTTTA
1 GGAATTTAGT-TTATATATTTTTCAGTTTTTA
*
14730382 -AAATTTAG
1 GGAATTTAG
14730390 GTCTAATTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 18 0.53
30 10 0.29
31 6 0.18
ACGTcount: A:0.26, C:0.03, G:0.12, T:0.59
Consensus pattern (31 bp):
GGAATTTAGTTTATATATTTTTCAGTTTTTA
Found at i:14732478 original size:3 final size:3
Alignment explanation
Indices: 14732472--14732500 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14732462 ACGTATATTT
14732472 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
14732501 TTGTGAGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:14736996 original size:22 final size:21
Alignment explanation
Indices: 14736971--14737012 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
14736961 TTAAAAATAA
14736971 TATTT-ATATTATTTTAATTTAG
1 TATTTAATATT-TTTT-ATTTAG
14736993 TATTTAATATTTTTTATTTA
1 TATTTAATATTTTTTATTTA
14737013 TTAGAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 9 0.47
23 5 0.26
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (21 bp):
TATTTAATATTTTTTATTTAG
Found at i:14738194 original size:19 final size:19
Alignment explanation
Indices: 14738164--14738202 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
14738154 TTTAAAAATA
14738164 AAAAATAAAAAATAT-TTT
1 AAAAATAAAAAATATATTT
14738182 AAAAATAAAAAAATATATTT
1 AAAAAT-AAAAAATATATTT
14738202 A
1 A
14738203 TTATATTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.32
19 9 0.47
20 4 0.21
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAAATAAAAAATATATTT
Found at i:14738204 original size:25 final size:25
Alignment explanation
Indices: 14738144--14738193 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
14738134 AATAAACACC
14738144 AAAATTTTATTTTAAAAATAAAAAAT
1 AAAA-TTTATTTTAAAAATAAAAAAT
**
14738170 AAAAAATATTTTAAAAATAAAAAA
1 AAAATTTATTTTAAAAATAAAAAA
14738194 ATATATTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (25 bp):
AAAATTTATTTTAAAAATAAAAAAT
Found at i:14743466 original size:22 final size:23
Alignment explanation
Indices: 14743439--14743483 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
14743429 ATATAATTTT
14743439 AGATATGA-TATGCAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
* *
14743461 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
14743484 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (23 bp):
AGATATGATTATGCAATCTTAGA
Found at i:14743467 original size:17 final size:19
Alignment explanation
Indices: 14743407--14743460 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
14743397 AATCTTCAGG
14743407 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* ** *
14743426 GACATATAATTTTAGATAT
1 GATATGCAATCTTAGATAT
14743445 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
14743461 AGATATGATT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14750663 original size:132 final size:131
Alignment explanation
Indices: 14750426--14750924 Score: 802
Period size: 132 Copynumber: 3.8 Consensus size: 131
14750416 TTGACAGCGA
*
14750426 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
14750491 TCTACTTCCATGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCC-TGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
14750556 GG
130 GG
* * *
14750558 AGCAGATCGAAGATGGCGGATTTTACTTCCATGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* * *
14750623 TCTACTTCTCTGGACAATAGTGGAATAGATTGAAGATTTCAGGTCTTATCTCCTTAAGCAGTAGT
66 TCTACTTC-CTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
14750688 GG
130 GG
* *
14750690 AGCAAATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* *
14750755 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGTAGTACT
66 TCTACTT-CCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
14750820 GG
130 GG
*
14750822 AGCAGATCGAAGATGGCGGATTTTACCACCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA-
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* * * *
14750886 TCATATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
66 TC-TA-CTTCCTGGACAACAGTGGAATAGATTGAAGATT
14750925 GTAAGTCCTA
Statistics
Matches: 341, Mismatches: 22, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
131 2 0.01
132 335 0.98
133 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (131 bp):
AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
TCTACTTCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTG
G
Found at i:14751276 original size:19 final size:19
Alignment explanation
Indices: 14751252--14751362 Score: 161
Period size: 19 Copynumber: 5.8 Consensus size: 19
14751242 AATCTTCAGG
14751252 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14751271 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
14751290 -ATTATATAATCTTAGATAT
1 GA-TATGCAATCTTAGATAT
14751309 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
14751328 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14751347 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
14751363 AGATATGATT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
18 1 0.01
19 80 0.98
20 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.40
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14751303 original size:38 final size:38
Alignment explanation
Indices: 14751259--14751362 Score: 183
Period size: 38 Copynumber: 2.7 Consensus size: 38
14751249 AGGGATATGC
*
14751259 AATCTTAGATATGATATGTAATCTTAGATAT-ATTATAT
1 AATCTTAGATATGATATGCAATCTTAGATATGA-TATAT
14751297 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
14751335 AATCTTAGATATGATATGCAATCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
14751363 AGATATGATT
Statistics
Matches: 64, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
38 63 0.98
39 1 0.02
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.40
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATGATATAT
Found at i:14751384 original size:23 final size:22
Alignment explanation
Indices: 14751252--14751385 Score: 91
Period size: 19 Copynumber: 6.7 Consensus size: 22
14751242 AATCTTCAGG
14751252 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
* *
14751271 GATATGTAATCTTAG-ATATAT
1 GATATGCAATCTTAGAAGATAT
*
14751292 TATAT--AATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
14751309 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
**
14751328 GATATATAATCTTAG---ATAT
1 GATATGCAATCTTAGAAGATAT
14751347 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
14751369 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
14751386 GATTTAATTT
Statistics
Matches: 94, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
17 9 0.10
19 58 0.62
21 9 0.10
22 6 0.06
23 12 0.13
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.40
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:14761713 original size:197 final size:195
Alignment explanation
Indices: 14761388--14761916 Score: 711
Period size: 197 Copynumber: 2.7 Consensus size: 195
14761378 CTGGTGAATG
* * * *
14761388 CTTTACATATGATCAACAATGCTTTAA-GTCTCTTGAACAAGCTAATAAATTACTATAGATTGGA
1 CTTTATATAAGATCAAGAATGCTTTAAGGT-TCTTGAACAAGCTAATAAAGTAC--TAGATTGGA
* * * * *
14761452 GCTACAATTTAGTTTCCAAGCTACAAAATGCAATTCAATTTCAAAAAGGGCAAAGAGTGCAACAA
63 GATACAA-TTAGTTTCCATGATATAGAATGCAATTCAATTTCAAAAAGGGCAAAGAGTGCAACAA
*
14761517 AATCCCATAAAGCATACTAATCTAACCACAAATTC-GAAGTAGTTTCAACCTCTAAAATTCCAGA
127 AATCCCATAAAGCATACCAATCTAACCACAAATTCAG-AGTAGTTTCAACCTCTAAAATTCCAGA
14761581 CAGTC
191 CAGTC
* * * *
14761586 CTTTATATAAGATCAAGAATGCTTGAAGGTTCTTGAACAAACTAATAAAGAACTAGGTTGGAGAT
1 CTTTATATAAGATCAAGAATGCTTTAAGGTTCTTGAACAAGCTAATAAAGTACTAGATTGGAGAT
14761651 ACCAATTAGTTTCCATGGATATAGAATGCAATTCAATTTCAAAAAGGGCAAAGAGTGCAACAAAA
66 A-CAATTAGTTTCCAT-GATATAGAATGCAATTCAATTTCAAAAAGGGCAAAGAGTGCAACAAAA
* ** * * *
14761716 TTCCATATTGCATACCAATCTAACCGCAAATTCAGAGTAGTTTCAACCTTTAAAATTCCAGAGAG
129 TCCCATAAAGCATACCAATCTAACCACAAATTCAGAGTAGTTTCAACCTCTAAAATTCCAGACAG
14761781 TC
194 TC
* * * *
14761783 CATTATATAAGATTAAGAATGCTTTAAGGATCTTGAACAGGCTAATAAAGTACTAGATTGGAGAT
1 CTTTATATAAGATCAAGAATGCTTTAAGGTTCTTGAACAAGCTAATAAAGTACTAGATTGGAGAT
** * *
14761848 AACAATTAGTTTCCACTGATATAGAATGGGATTTAATTTCACAAAGGGCAAAGAGTGCAACAAAA
66 -ACAATTAGTTTCCA-TGATATAGAATGCAATTCAATTTCAAAAAGGGCAAAGAGTGCAACAAAA
14761913 TCCC
129 TCCC
14761917 GAACACATAA
Statistics
Matches: 292, Mismatches: 33, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
196 21 0.07
197 223 0.76
198 46 0.16
199 2 0.01
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.27
Consensus pattern (195 bp):
CTTTATATAAGATCAAGAATGCTTTAAGGTTCTTGAACAAGCTAATAAAGTACTAGATTGGAGAT
ACAATTAGTTTCCATGATATAGAATGCAATTCAATTTCAAAAAGGGCAAAGAGTGCAACAAAATC
CCATAAAGCATACCAATCTAACCACAAATTCAGAGTAGTTTCAACCTCTAAAATTCCAGACAGTC
Found at i:14771273 original size:15 final size:15
Alignment explanation
Indices: 14771249--14771281 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
14771239 ACCACCAAGG
*
14771249 CCACCGCCATACATT
1 CCACCACCATACATT
14771264 CCACCACCATACATT
1 CCACCACCATACATT
14771279 CCA
1 CCA
14771282 GAGTTCCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.30, C:0.48, G:0.03, T:0.18
Consensus pattern (15 bp):
CCACCACCATACATT
Found at i:14774701 original size:25 final size:23
Alignment explanation
Indices: 14774624--14774727 Score: 113
Period size: 22 Copynumber: 4.4 Consensus size: 23
14774614 TGCACAAATA
*
14774624 AACAGAGAGCACTAAAGTGCTAT
1 AACAGAGAGCACTAACGTGCTAT
* *
14774647 -ACAGAGAGCACAAATGTGCTA-
1 AACAGAGAGCACTAACGTGCTAT
*
14774668 AACAGAGAGCACTGACGTGCTAGT
1 AACAGAGAGCACTAACGTGCTA-T
*
14774692 AATCAGAGAGCACTAACGTGCCAAT
1 AA-CAGAGAGCACTAACGTG-CTAT
14774717 AATCAGAGAGC
1 AA-CAGAGAGC
14774728 GCGCTAGGGT
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
22 37 0.54
24 2 0.03
25 28 0.41
26 2 0.03
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.15
Consensus pattern (23 bp):
AACAGAGAGCACTAACGTGCTAT
Found at i:14776788 original size:31 final size:31
Alignment explanation
Indices: 14776743--14776801 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
14776733 AATATTTATA
* *
14776743 GGAAATATATATAATATA-TTCATAAATATTT
1 GGAAAGATAAATAATATATTTC-TAAATATTT
14776774 GGAAAGATAAATAATATATTTCTAAATA
1 GGAAAGATAAATAATATATTTCTAAATA
14776802 GAGGTGTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 22 0.88
32 3 0.12
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.37
Consensus pattern (31 bp):
GGAAAGATAAATAATATATTTCTAAATATTT
Found at i:14777907 original size:7 final size:7
Alignment explanation
Indices: 14777892--14777932 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
14777882 AAAGTATTTT
*
14777892 AAAATTA
1 AAAAATA
14777899 AAAAATA
1 AAAAATA
*
14777906 AAAATTA
1 AAAAATA
14777913 AAAAAT-
1 AAAAATA
14777919 AAAAATA
1 AAAAATA
14777926 AAAAATA
1 AAAAATA
14777933 TATATTTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
6 6 0.20
7 24 0.80
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (7 bp):
AAAAATA
Found at i:14777915 original size:13 final size:14
Alignment explanation
Indices: 14777892--14777932 Score: 75
Period size: 14 Copynumber: 3.0 Consensus size: 14
14777882 AAAGTATTTT
14777892 AAAATTAAAAAATA
1 AAAATTAAAAAATA
14777906 AAAATTAAAAAATA
1 AAAATTAAAAAATA
14777920 AAAA-TAAAAAATA
1 AAAATTAAAAAATA
14777933 TATATTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 9 0.33
14 18 0.67
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (14 bp):
AAAATTAAAAAATA
Found at i:14778932 original size:18 final size:19
Alignment explanation
Indices: 14778900--14778936 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14778890 TTTCAGCTCA
14778900 TTTTCAAAAAGCACTTCTG
1 TTTTCAAAAAGCACTTCTG
14778919 TTTTCAAAAA-CACTTCTG
1 TTTTCAAAAAGCACTTCTG
14778937 AAAAGTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (19 bp):
TTTTCAAAAAGCACTTCTG
Found at i:14780162 original size:26 final size:27
Alignment explanation
Indices: 14780133--14780192 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 27
14780123 AATATTGAAT
14780133 TTAAATTATAAATTAGGTTT-G-ATAT-A
1 TTAAATTATAAATTA--TTTGGAATATAA
14780159 TT-AATTA-AAATTATTTGGAATATAA
1 TTAAATTATAAATTATTTGGAATATAA
14780184 TTAAATTAT
1 TTAAATTAT
14780193 TTGATAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
22 3 0.10
23 1 0.03
24 10 0.34
25 8 0.28
26 7 0.24
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (27 bp):
TTAAATTATAAATTATTTGGAATATAA
Found at i:14780202 original size:22 final size:22
Alignment explanation
Indices: 14780141--14780205 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 22
14780131 ATTTAAATTA
*
14780141 TAAATTAGGTTTGATATAT-TAAT
1 TAAATTA--TTTGATAAATATAAT
*
14780164 TAAAATTATTTG--GAATATAAT
1 T-AAATTATTTGATAAATATAAT
14780185 TAAATTATTTGATAAATATAA
1 TAAATTATTTGATAAATATAA
14780206 ATTTTAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
20 12 0.34
21 5 0.14
22 11 0.31
23 1 0.03
24 6 0.17
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.45
Consensus pattern (22 bp):
TAAATTATTTGATAAATATAAT
Found at i:14786476 original size:18 final size:18
Alignment explanation
Indices: 14786453--14786487 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14786443 TGATTAAATC
*
14786453 AATTTTTAATATTTTATA
1 AATTTTTAATAATTTATA
14786471 AATTTTTAATAATTTAT
1 AATTTTTAATAATTTAT
14786488 TTAATCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
AATTTTTAATAATTTATA
Found at i:14791890 original size:139 final size:140
Alignment explanation
Indices: 14791632--14791893 Score: 300
Period size: 139 Copynumber: 1.9 Consensus size: 140
14791622 GAACCTCAGT
* ** * *
14791632 TATCTAATTATCTAATGAAATGAGCTAATATGTTAAATATATTAATTAAAAAAAAAACTTGAAGC
1 TATCTAATCATCTAACCAAATGAACTAATATGTTAAATAAATTAATTAAAAAAAAAACTTGAAGC
* * ** *
14791697 AACATCATGAAAAAAATGTACAAATGTGAGTAGAAGAGAAATCAAACTCAAGACTCAATATGATG
66 AACATCATGAAAAAAAAGTACAAATATGAACAGAAGAGAAATCAAACCCAAGACTCAATATGATG
14791762 TAATTAGCAC
131 TAATTAGCAC
**
14791772 TATCTAATCATCTAACCAAAT-AACTAATATGTTAAA-AAATTAATTAAAATTTAAAACGTTTGA
1 TATCTAATCATCTAACCAAATGAACTAATATGTTAAATAAATTAATTAAAA-AAAAAAC--TTGA
* * ** *
14791835 AG-AA-A-CATTAAATAAAAAGTACAAATATGAACAGAAGAGGAATTGAACCCGAGACTCAA
63 AGCAACATCATGAAA-AAAAAGTACAAATATGAACAGAAGAGAAATCAAACCCAAGACTCAA
14791894 AGATAAAAAT
Statistics
Matches: 101, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
138 18 0.18
139 57 0.56
140 20 0.20
141 6 0.06
ACGTcount: A:0.50, C:0.11, G:0.12, T:0.26
Consensus pattern (140 bp):
TATCTAATCATCTAACCAAATGAACTAATATGTTAAATAAATTAATTAAAAAAAAAACTTGAAGC
AACATCATGAAAAAAAAGTACAAATATGAACAGAAGAGAAATCAAACCCAAGACTCAATATGATG
TAATTAGCAC
Found at i:14794844 original size:29 final size:30
Alignment explanation
Indices: 14794785--14794842 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
14794775 TCCGAGCCTT
*
14794785 GGGGAAAAAATGTAATTATGTAAAAGTTTA
1 GGGGAAAAAATGTAATTATGAAAAAGTTTA
* * *
14794815 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGAAAAAATGTAATTATGAAAAAGTT
14794843 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.43, C:0.02, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGAAAAAATGTAATTATGAAAAAGTTTA
Found at i:14795071 original size:13 final size:13
Alignment explanation
Indices: 14795053--14795084 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14795043 TTTCCAGCAA
14795053 TTATGAATTTATT
1 TTATGAATTTATT
14795066 TTATGAATTTATT
1 TTATGAATTTATT
*
14795079 TGATGA
1 TTATGA
14795085 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:14795299 original size:50 final size:50
Alignment explanation
Indices: 14795179--14795420 Score: 279
Period size: 50 Copynumber: 4.7 Consensus size: 50
14795169 ATTTGGGTAA
* * * * *
14795179 AGAGATCCCATGTAAGACCATGTCTGGGACATGTCATTGACATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
14795235 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
14795285 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
14795335 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
14795385 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
14795421 TTTGGCATGT
Statistics
Matches: 164, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.18
52 1 0.01
53 3 0.02
55 2 0.01
56 37 0.23
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:14795360 original size:100 final size:103
Alignment explanation
Indices: 14795179--14795428 Score: 346
Period size: 100 Copynumber: 2.4 Consensus size: 103
14795169 ATTTGGGTAA
* *
14795179 AGAGATCCCATGTAAGACCATGTCTGGGACATGTCATTGACATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
14795244 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
14795285 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
14795347 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
14795385 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
14795429 GTTATTATCA
Statistics
Matches: 131, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.39
101 39 0.30
105 2 0.02
106 38 0.29
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:14813814 original size:3 final size:3
Alignment explanation
Indices: 14813806--14813839 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
14813796 TAATGTATTC
14813806 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
14813840 TTAACTTGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:14813912 original size:23 final size:22
Alignment explanation
Indices: 14813873--14813923 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 22
14813863 CTTGAATTTG
* *
14813873 ACATATTTTTTTTTAATGTGAT
1 ACATGTTTTTTTCTAATGTGAT
*
14813895 ACATGTTTTTTATCTAATGTGGT
1 ACATGTTTTTT-TCTAATGTGAT
14813918 ACATGT
1 ACATGT
14813924 ATTTAGTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
22 10 0.40
23 15 0.60
ACGTcount: A:0.25, C:0.08, G:0.14, T:0.53
Consensus pattern (22 bp):
ACATGTTTTTTTCTAATGTGAT
Found at i:14814406 original size:24 final size:25
Alignment explanation
Indices: 14814369--14814419 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
14814359 TTTCAATAAT
*
14814369 AAATATGTATTACTATATATAA-ATA
1 AAATATGTAATACTATA-ATAATATA
*
14814394 AAATATG-AATACTTTAATAATATA
1 AAATATGTAATACTATAATAATATA
14814418 AA
1 AA
14814420 CATACATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 4 0.17
24 12 0.52
25 7 0.30
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.37
Consensus pattern (25 bp):
AAATATGTAATACTATAATAATATA
Found at i:14816756 original size:133 final size:133
Alignment explanation
Indices: 14816589--14816838 Score: 410
Period size: 133 Copynumber: 1.9 Consensus size: 133
14816579 AGTAGCAACT
* *
14816589 ACTGTAGAAATCTTCATCTAGGATGAGGAAGGCTAGCCAAAAGCTGTTTTTGGGATTCCAAATTG
1 ACTGTAGAAATCTACATCTAGGATGAGGAAGGCTAGCCAAAAGCTGTTTTTGGGATTCCAAATTA
* * *
14816654 CCTTACATTGAACATGCATATGGAATAGGGCATATTGAGCTCATCACTCTCACTCATCACTTTCA
66 CATTACATTAAACATGCATATGGAATAGGACATATTGAGCTCATCACTCTCACTCATCACTTTCA
14816719 TCC
131 TCC
* *
14816722 ACTGTAGAAATCTACATCTAGGATGAGGAGGGCTAGCCAAAAGCTGTTTTTGGGATTTCAAATTA
1 ACTGTAGAAATCTACATCTAGGATGAGGAAGGCTAGCCAAAAGCTGTTTTTGGGATTCCAAATTA
* * *
14816787 CATTACATTAAACATGCATTTGTAATAGGACATGTTGAGCTCATCACTCTCA
66 CATTACATTAAACATGCATATGGAATAGGACATATTGAGCTCATCACTCTCA
14816839 GCCATTTCCA
Statistics
Matches: 107, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
133 107 1.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (133 bp):
ACTGTAGAAATCTACATCTAGGATGAGGAAGGCTAGCCAAAAGCTGTTTTTGGGATTCCAAATTA
CATTACATTAAACATGCATATGGAATAGGACATATTGAGCTCATCACTCTCACTCATCACTTTCA
TCC
Found at i:14819021 original size:48 final size:48
Alignment explanation
Indices: 14818925--14819025 Score: 116
Period size: 48 Copynumber: 2.1 Consensus size: 48
14818915 GAGGCAACAA
* * *
14818925 AGGGAAAGAGAAGAGGAAGAGAGAGAGCAAAGGAGGCGTGAAGTAGAG
1 AGGGAAAGAGAAGAGGAAGAGAGAGAACAAAGAAGGCGTGAAGAAGAG
* * *
14818973 AGGGAAAGGGAGGA-GAAGGAGAGAGAACAAAGAAGGCTTG-AGAAAGAG
1 AGGGAAAGAGAAGAGGAA-GAGAGAGAACAAAGAAGGCGTGAAG-AAGAG
14819021 AGGGA
1 AGGGA
14819026 GCGAATTAGG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
47 5 0.11
48 40 0.89
ACGTcount: A:0.47, C:0.04, G:0.46, T:0.04
Consensus pattern (48 bp):
AGGGAAAGAGAAGAGGAAGAGAGAGAACAAAGAAGGCGTGAAGAAGAG
Found at i:14820182 original size:6 final size:6
Alignment explanation
Indices: 14820171--14820199 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
14820161 GGTCTGAGGT
14820171 TGCTTG TGCTTG TGCTTG TGCTTG TGCTT
1 TGCTTG TGCTTG TGCTTG TGCTTG TGCTT
14820200 TACTCTAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.17, G:0.31, T:0.52
Consensus pattern (6 bp):
TGCTTG
Found at i:14820268 original size:31 final size:31
Alignment explanation
Indices: 14820233--14820294 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
14820223 TGTTAAAGTT
14820233 AACTTGTATAATTGACTCTGGAATAGTTTAC
1 AACTTGTATAATTGACTCTGGAATAGTTTAC
14820264 AACTTGTATAATTGACTCTGGAATAGTTTAC
1 AACTTGTATAATTGACTCTGGAATAGTTTAC
14820295 TCAGTTTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (31 bp):
AACTTGTATAATTGACTCTGGAATAGTTTAC
Found at i:14825127 original size:23 final size:22
Alignment explanation
Indices: 14825101--14825145 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
14825091 TTTAACTAAA
14825101 TTAAAAAATTAATTAAATTATTT
1 TTAAAAAATTAA-TAAATTATTT
* * *
14825124 TTAAATATTTAATAATTTATTT
1 TTAAAAAATTAATAAATTATTT
14825146 AATTGAATCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TTAAAAAATTAATAAATTATTT
Found at i:14837930 original size:39 final size:39
Alignment explanation
Indices: 14837879--14837956 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
14837869 ACTAACATTT
14837879 TTAATTTAAATAAATTGCCATCATTATGAAGATTTCTAA
1 TTAATTTAAATAAATTGCCATCATTATGAAGATTTCTAA
14837918 TTAATTTAAATAAATTGCCATCATTATGAAGATTTCTAA
1 TTAATTTAAATAAATTGCCATCATTATGAAGATTTCTAA
14837957 CTTTGATGGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (39 bp):
TTAATTTAAATAAATTGCCATCATTATGAAGATTTCTAA
Found at i:14843850 original size:29 final size:31
Alignment explanation
Indices: 14843786--14843853 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
14843776 AATATTCCAC
*
14843786 ATAAA-ATTACAAAATTATTTTAATTTTGAA
1 ATAAATATTAAAAAATTATTTTAATTTTGAA
14843816 AT-AATATTAAAAAA-TATTTTTAA-TTT-AA
1 ATAAATATTAAAAAATTA-TTTTAATTTTGAA
14843844 ATAAATATTA
1 ATAAATATTA
14843854 TTTTATACAC
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
28 4 0.12
29 14 0.41
30 16 0.47
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (31 bp):
ATAAATATTAAAAAATTATTTTAATTTTGAA
Found at i:14845249 original size:40 final size:40
Alignment explanation
Indices: 14845205--14845290 Score: 104
Period size: 39 Copynumber: 2.2 Consensus size: 40
14845195 CGTAAGCGCA
* * *
14845205 ATTTGCTT-CCACGTCAGCATATCACGCTTATGTGGACGCG
1 ATTTGCTTGCCACGTAAGCA-ATCACGCTGACGTGGACGCG
* *
14845245 ATTTG-TTGCCACGTAAGTAATCGCGCTGACGTGGACGCG
1 ATTTGCTTGCCACGTAAGCAATCACGCTGACGTGGACGCG
14845284 ATTTGCT
1 ATTTGCT
14845291 GATACGTCCC
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
39 24 0.62
40 15 0.38
ACGTcount: A:0.20, C:0.24, G:0.26, T:0.30
Consensus pattern (40 bp):
ATTTGCTTGCCACGTAAGCAATCACGCTGACGTGGACGCG
Found at i:14848167 original size:28 final size:29
Alignment explanation
Indices: 14848135--14848193 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
14848125 ATTAAAATTT
14848135 ATTTTATAT-ATAATATTATA-TATTTAAA
1 ATTTTAT-TGATAATATTATATTATTTAAA
* *
14848163 ATTTTATTGATCATATTTTATTATTTAAA
1 ATTTTATTGATAATATTATATTATTTAAA
14848192 AT
1 AT
14848194 ATAGTTTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 1 0.04
28 16 0.59
29 10 0.37
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (29 bp):
ATTTTATTGATAATATTATATTATTTAAA
Found at i:14852727 original size:20 final size:20
Alignment explanation
Indices: 14852702--14852741 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14852692 CGTAAAATGA
*
14852702 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
14852722 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
14852742 GAAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:14852731 original size:34 final size:35
Alignment explanation
Indices: 14852687--14852753 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
14852677 CAGTAAAATA
* *
14852687 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGAAAAATATTTTAC
*
14852721 TTTTCTGTAAAATGATTTACTGAAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGAAAAATATTTT
14852754 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGAAAAATATTTTAC
Found at i:14852981 original size:51 final size:52
Alignment explanation
Indices: 14852920--14853026 Score: 198
Period size: 51 Copynumber: 2.1 Consensus size: 52
14852910 ATAATACTCA
14852920 ATTATTAAACTACAATATTAATCGTTATAAATTG-AAAAAAAATACATTCTT
1 ATTATTAAACTACAATATTAATCGTTATAAATTGAAAAAAAAATACATTCTT
*
14852971 ATTATTAAACTACAATATTAATCGTTATAAATTGAAAAAAAAATGCATTCTT
1 ATTATTAAACTACAATATTAATCGTTATAAATTGAAAAAAAAATACATTCTT
14853023 ATTA
1 ATTA
14853027 GTTGGAAAAA
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 34 0.63
52 20 0.37
ACGTcount: A:0.49, C:0.09, G:0.05, T:0.37
Consensus pattern (52 bp):
ATTATTAAACTACAATATTAATCGTTATAAATTGAAAAAAAAATACATTCTT
Found at i:14853525 original size:111 final size:111
Alignment explanation
Indices: 14853331--14853552 Score: 444
Period size: 111 Copynumber: 2.0 Consensus size: 111
14853321 TGATGAAGTA
14853331 TTGTTGTCTAAGAGAGAGAGTAGTGATATATGTATACCATATAAACATACACTACTTTTTCTAAA
1 TTGTTGTCTAAGAGAGAGAGTAGTGATATATGTATACCATATAAACATACACTACTTTTTCTAAA
14853396 TGTCTGTACATATTAACAAACTTTAATACAACAATACAACTACATG
66 TGTCTGTACATATTAACAAACTTTAATACAACAATACAACTACATG
14853442 TTGTTGTCTAAGAGAGAGAGTAGTGATATATGTATACCATATAAACATACACTACTTTTTCTAAA
1 TTGTTGTCTAAGAGAGAGAGTAGTGATATATGTATACCATATAAACATACACTACTTTTTCTAAA
14853507 TGTCTGTACATATTAACAAACTTTAATACAACAATACAACTACATG
66 TGTCTGTACATATTAACAAACTTTAATACAACAATACAACTACATG
14853553 CATGGTATTG
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 111 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (111 bp):
TTGTTGTCTAAGAGAGAGAGTAGTGATATATGTATACCATATAAACATACACTACTTTTTCTAAA
TGTCTGTACATATTAACAAACTTTAATACAACAATACAACTACATG
Found at i:14856988 original size:4 final size:4
Alignment explanation
Indices: 14856979--14857015 Score: 56
Period size: 4 Copynumber: 9.0 Consensus size: 4
14856969 AAAAGTATTA
*
14856979 AAAG AAAG AATAA AAAG AAAG AAAG AAAG AAAG AAAG
1 AAAG AAAG AA-AG AAAG AAAG AAAG AAAG AAAG AAAG
14857016 CCATACGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 27 0.90
5 3 0.10
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.03
Consensus pattern (4 bp):
AAAG
Found at i:14859191 original size:41 final size:42
Alignment explanation
Indices: 14859128--14859207 Score: 101
Period size: 41 Copynumber: 1.9 Consensus size: 42
14859118 TTTTAGGTCC
*
14859128 ACACGGCCAGACACACGAGCGTGTGACTCGATCGTGTGAGAT
1 ACACGGCCAGACACACGAGCGTGTGACTCGACCGTGTGAGAT
* * *
14859170 ACACGGCTAG-CACAC-AGGCGTGTGGCTTGACCGTGTGA
1 ACACGGCCAGACACACGA-GCGTGTGACTCGACCGTGTGA
14859208 CCCAAGTCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
40 1 0.03
41 23 0.70
42 9 0.27
ACGTcount: A:0.24, C:0.26, G:0.33, T:0.17
Consensus pattern (42 bp):
ACACGGCCAGACACACGAGCGTGTGACTCGACCGTGTGAGAT
Found at i:14862369 original size:18 final size:18
Alignment explanation
Indices: 14862347--14862399 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 18
14862337 TAAAAAATGG
*
14862347 AAAAAATTATAAATTTATT
1 AAAATATTA-AAATTTATT
14862366 AAAATATTAAAATTTATT
1 AAAATATTAAAATTTATT
14862384 AAAATAATATAAAATT
1 AAAAT-AT-TAAAATT
14862400 GAAAGAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
18 14 0.45
19 10 0.32
20 7 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAATATTAAAATTTATT
Found at i:14862370 original size:10 final size:10
Alignment explanation
Indices: 14862352--14862388 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
14862342 AATGGAAAAA
14862352 ATTATAAATTT
1 ATTA-AAATTT
14862363 ATTAAAA--T
1 ATTAAAATTT
14862371 ATTAAAATTT
1 ATTAAAATTT
14862381 ATTAAAAT
1 ATTAAAAT
14862389 AATATAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
8 8 0.33
10 12 0.50
11 4 0.17
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
ATTAAAATTT
Found at i:14862425 original size:21 final size:21
Alignment explanation
Indices: 14862384--14862423 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
14862374 AAAATTTATT
*
14862384 AAAATAATATAAAATTGAAAG
1 AAAATAATATAAAATTAAAAG
*
14862405 AAAATATTA-AAAATTAAAA
1 AAAATAATATAAAATTAAAA
14862424 AGTATAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (21 bp):
AAAATAATATAAAATTAAAAG
Found at i:14862437 original size:35 final size:37
Alignment explanation
Indices: 14862366--14862438 Score: 105
Period size: 35 Copynumber: 2.0 Consensus size: 37
14862356 TAAATTTATT
14862366 AAAATATTAAAATTTATTAAAATAATATAAAATTGAAAG
1 AAAATATTAAAA--TATTAAAATAATATAAAATTGAAAG
*
14862405 AAAATATTAAAA-ATTAAAA-AGTATAAAATTGAAA
1 AAAATATTAAAATATTAAAATAATATAAAATTGAAA
14862439 ATATATATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
35 14 0.42
36 7 0.21
39 12 0.36
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.30
Consensus pattern (37 bp):
AAAATATTAAAATATTAAAATAATATAAAATTGAAAG
Found at i:14862439 original size:16 final size:16
Alignment explanation
Indices: 14862384--14862445 Score: 54
Period size: 16 Copynumber: 3.6 Consensus size: 16
14862374 AAAATTTATT
14862384 AAAATAATATAAAATTG
1 AAAA-AATATAAAATTG
14862401 AAAGAAAATATTAAAAATT-
1 -AA-AAAATA-T-AAAATTG
*
14862420 AAAAAGTATAAAATTG
1 AAAAAATATAAAATTG
*
14862436 AAAATATATA
1 AAAAAATATA
14862446 TATAAATTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
15 6 0.16
16 9 0.24
17 5 0.14
18 8 0.22
19 3 0.08
20 6 0.16
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.27
Consensus pattern (16 bp):
AAAAAATATAAAATTG
Found at i:14862851 original size:14 final size:17
Alignment explanation
Indices: 14862828--14862863 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
14862818 TTTTTTATAC
14862828 TTTTTGAAAA-TTCT-A
1 TTTTTGAAAATTTCTAA
14862843 TTTTT-AAAATTTCTAA
1 TTTTTGAAAATTTCTAA
14862859 TTTTT
1 TTTTT
14862864 TATATTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 4 0.21
15 9 0.47
16 6 0.32
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.61
Consensus pattern (17 bp):
TTTTTGAAAATTTCTAA
Found at i:14863431 original size:18 final size:18
Alignment explanation
Indices: 14863410--14863444 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14863400 ATTCAAATCC
*
14863410 ATTTTTATCAATTCTCTA
1 ATTTCTATCAATTCTCTA
14863428 ATTTCTATCAATTCTCT
1 ATTTCTATCAATTCTCT
14863445 CAAATGTCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.20, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTTCTATCAATTCTCTA
Found at i:14871263 original size:57 final size:58
Alignment explanation
Indices: 14871186--14871297 Score: 154
Period size: 57 Copynumber: 1.9 Consensus size: 58
14871176 TACATGTCAT
** * *
14871186 TTTCATTTTGGTTTTGGAGAAAACCACATTAATTTCCAAATGATTC-CATTTCTCTAG
1 TTTCATTTTCATTTTCGAGAAAACCACAATAATTTCCAAATGATTCTCATTTCTCTAG
* * *
14871243 TTTCATTTTCATTTTCGAGAAAACCATAATCATTTCCAAATGTTTCTCATTTCTC
1 TTTCATTTTCATTTTCGAGAAAACCACAATAATTTCCAAATGATTCTCATTTCTC
14871298 CATTTTCACC
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 39 0.83
58 8 0.17
ACGTcount: A:0.28, C:0.20, G:0.09, T:0.44
Consensus pattern (58 bp):
TTTCATTTTCATTTTCGAGAAAACCACAATAATTTCCAAATGATTCTCATTTCTCTAG
Found at i:14873780 original size:41 final size:41
Alignment explanation
Indices: 14873716--14873849 Score: 189
Period size: 41 Copynumber: 3.2 Consensus size: 41
14873706 TTAATTTAAA
* *
14873716 CAGATTCACTGGCACTTCA-CCTGCTAGGCTTGTAGCCTGATT
1 CAGA-TCACCGGCACTT-AGCCTGCTAGGCTTATAGCCTGATT
* *
14873758 CAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCTTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
**
14873799 CAGATCACCGAAACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
14873840 CAGATCACCG
1 CAGATCACCG
14873850 ACAATTAATC
Statistics
Matches: 83, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
40 1 0.01
41 79 0.95
42 3 0.04
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
Found at i:14876185 original size:24 final size:25
Alignment explanation
Indices: 14876138--14876185 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
14876128 TAAGCCCTCT
* * *
14876138 CGAGCTTTCCGTTATATGGTTCTTG
1 CGAGCTTCCCGTTATATAGCTCTTG
14876163 CGAGCTTCCCGTTA-ATAGCTCTT
1 CGAGCTTCCCGTTATATAGCTCTT
14876186 TGGAGCATCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.15, C:0.25, G:0.21, T:0.40
Consensus pattern (25 bp):
CGAGCTTCCCGTTATATAGCTCTTG
Found at i:14876291 original size:26 final size:26
Alignment explanation
Indices: 14876262--14876332 Score: 90
Period size: 26 Copynumber: 2.8 Consensus size: 26
14876252 TATTATATGA
14876262 CTCTTCGTGAGCTTCCCGATTAAAGG
1 CTCTTCGTGAGCTTCCCGATTAAAGG
* * * *
14876288 CTCTTTGTGGGCTTCCTGATTAATGG
1 CTCTTCGTGAGCTTCCCGATTAAAGG
*
14876314 CTCTTC-AGAGCTTCCCGAT
1 CTCTTCGTGAGCTTCCCGAT
14876333 ATGGCTCGCT
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
25 10 0.27
26 27 0.73
ACGTcount: A:0.15, C:0.27, G:0.23, T:0.35
Consensus pattern (26 bp):
CTCTTCGTGAGCTTCCCGATTAAAGG
Found at i:14885668 original size:19 final size:19
Alignment explanation
Indices: 14885623--14885662 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
14885613 AGTTCATGTT
* *
14885623 TTCATTTCACATTTTCATA
1 TTCAATTCACATTTTCAAA
14885642 TTCAATTCACATTTTCAAA
1 TTCAATTCACATTTTCAAA
14885661 TT
1 TT
14885663 ATATTCCACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50
Consensus pattern (19 bp):
TTCAATTCACATTTTCAAA
Found at i:14885946 original size:23 final size:23
Alignment explanation
Indices: 14885835--14885945 Score: 120
Period size: 23 Copynumber: 5.0 Consensus size: 23
14885825 CCTGATCAGT
14885835 ATACGACACAT-AAGTGCCTG--
1 ATACGACACATAAAGTGCCTGAA
** * *
14885855 ATACGACACACGATGTGCCTAAA
1 ATACGACACATAAAGTGCCTGAA
** *
14885878 ATACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
*
14885901 ATACGACACATAAAGTGCCTGAT
1 ATACGACACATAAAGTGCCTGAA
*
14885924 GTACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
14885946 TCGGTAAAGC
Statistics
Matches: 78, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
20 10 0.13
21 7 0.09
23 61 0.78
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.18
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:14894856 original size:24 final size:22
Alignment explanation
Indices: 14894820--14894868 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
14894810 GTAACGAATC
*
14894820 TTTTATAGTATAAAATATAAATA
1 TTTTATAATAT-AAATATAAATA
*
14894843 TTTTAATAATATAAATATAAGTA
1 TTTT-ATAATATAAATATAAATA
14894866 TTT
1 TTT
14894869 ACTTAAGTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
TTTTATAATATAAATATAAATA
Found at i:14897253 original size:138 final size:139
Alignment explanation
Indices: 14896993--14897253 Score: 443
Period size: 138 Copynumber: 1.9 Consensus size: 139
14896983 AAAACCAATA
**
14896993 AAAATATGCATATAATAGGATTTGAACTCATGCTAATTAAATTAATAAGATCTTAAATTTACCAT
1 AAAATATGCATATAATAGGAGCTGAACTCATGCTAATTAAATTAATAAGATCTTAAATTTACCAT
*
14897058 TAAACTAAAGTTTCATTTTATTATTTTCATATGTTTTTAAATCACTATGCACAATTTAGCCTTTT
66 TAAACTAAAGTTTCATTTTATTATTTTCATATGTTTTTAAATCACTACGCACAATTTAGCCTTTT
14897123 AATTTTAAT
131 AATTTTAAT
* *
14897132 AAAA-ATGCATATAATAGGAGCTGAATTCATGTTAATTAAATTAATAAGATCTTAAATTTACCAT
1 AAAATATGCATATAATAGGAGCTGAACTCATGCTAATTAAATTAATAAGATCTTAAATTTACCAT
* * *
14897196 TCAACTAAAGTTTCATTTTATTATTTTCATATGTTTTTAAATTACTACGCACCATTTA
66 TAAACTAAAGTTTCATTTTATTATTTTCATATGTTTTTAAATCACTACGCACAATTTA
14897254 TTACTTTCTC
Statistics
Matches: 114, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
138 110 0.96
139 4 0.04
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (139 bp):
AAAATATGCATATAATAGGAGCTGAACTCATGCTAATTAAATTAATAAGATCTTAAATTTACCAT
TAAACTAAAGTTTCATTTTATTATTTTCATATGTTTTTAAATCACTACGCACAATTTAGCCTTTT
AATTTTAAT
Found at i:14906487 original size:30 final size:31
Alignment explanation
Indices: 14906447--14906506 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
14906437 GAAATCATCG
* *
14906447 GAAAGCCAAAGGTATGGGTATCA-AATATTA
1 GAAAGCCAAAGATACGGGTATCAGAATATTA
*
14906477 GAAAGTCAAAGATACGGGTATCAGAATATT
1 GAAAGCCAAAGATACGGGTATCAGAATATT
14906507 GGCATAAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 20 0.77
31 6 0.23
ACGTcount: A:0.43, C:0.10, G:0.23, T:0.23
Consensus pattern (31 bp):
GAAAGCCAAAGATACGGGTATCAGAATATTA
Found at i:14910259 original size:22 final size:22
Alignment explanation
Indices: 14910218--14910259 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
14910208 TTAAAAAAGA
* *
14910218 CATAATTATTCAACTGATATCT
1 CATAACTATTCAACTAATATCT
*
14910240 CATAACTATTCAAGTAATAT
1 CATAACTATTCAACTAATAT
14910260 TATTTGTATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.38
Consensus pattern (22 bp):
CATAACTATTCAACTAATATCT
Found at i:14925193 original size:9 final size:9
Alignment explanation
Indices: 14925179--14925227 Score: 53
Period size: 9 Copynumber: 5.0 Consensus size: 9
14925169 AAGAGAATGG
14925179 GAAAAAAAA
1 GAAAAAAAA
14925188 GAAAAAAAAA
1 G-AAAAAAAA
14925198 GAAAAGTTAAAA
1 GAAAA---AAAA
*
14925210 GAAATAAAA
1 GAAAAAAAA
14925219 GAAAAAAAA
1 GAAAAAAAA
14925228 TTGTTCAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
9 17 0.50
10 9 0.26
12 8 0.24
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (9 bp):
GAAAAAAAA
Found at i:14927044 original size:21 final size:21
Alignment explanation
Indices: 14927020--14927061 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
14927010 TAAATTAAGA
*
14927020 GTTTTTTTAATTTATTATTTT
1 GTTTATTTAATTTATTATTTT
*
14927041 GTTTATTTATTTTATTATTTT
1 GTTTATTTAATTTATTATTTT
14927062 CCACATGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (21 bp):
GTTTATTTAATTTATTATTTT
Found at i:14927893 original size:15 final size:15
Alignment explanation
Indices: 14927873--14927917 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
14927863 ATAAAATTAA
*
14927873 AAAAATATTAAAAAT
1 AAAAATAATAAAAAT
*
14927888 AAAAATAAAAAAAAT
1 AAAAATAATAAAAAT
14927903 AAAAA-AAGTAAAAAT
1 AAAAATAA-TAAAAAT
14927918 TCAACAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 2 0.08
15 24 0.92
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (15 bp):
AAAAATAATAAAAAT
Found at i:14927896 original size:23 final size:23
Alignment explanation
Indices: 14927865--14927917 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 23
14927855 ATAATTCTAT
* *
14927865 AAAATTAAAAAAATATTAAAAATA
1 AAAATAAAAAAAATA-AAAAAATA
14927889 AAAATAAAAAAAATAAAAAAAGTA
1 AAAATAAAAAAAATAAAAAAA-TA
14927913 AAAAT
1 AAAAT
14927918 TCAACAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (23 bp):
AAAATAAAAAAAATAAAAAAATA
Found at i:14930194 original size:22 final size:22
Alignment explanation
Indices: 14930164--14930206 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14930154 TTATTAAAAA
14930164 AAATAT-AAATCTAATAAAATTT
1 AAATATAAAATCTAA-AAAATTT
*
14930186 AAATTTAAAATCTAAAAAATT
1 AAATATAAAATCTAAAAAATT
14930207 CTGTTCACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (22 bp):
AAATATAAAATCTAAAAAATTT
Found at i:14947063 original size:41 final size:41
Alignment explanation
Indices: 14946929--14947157 Score: 244
Period size: 37 Copynumber: 5.6 Consensus size: 41
14946919 CATATGACCT
*
14946929 CTTATCAC-TTG-TCCTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCTA----ACCA
****
14946972 CTTATCACTTTACCACTTGATCAGATAAGTGTAG----CCA
1 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCTAACCA
14947009 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCTAACCA
1 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCTAACCA
14947050 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-TAACCA
1 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCTAACCA
14947087 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCTAAAACTACCA
1 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCT---A--ACCA
**
14947133 CTTATCACTTTGTCACTTGATCAGA
1 CTTATCACTTTGTTTCTTGATCAGA
14947158 AGTACTCAAA
Statistics
Matches: 162, Mismatches: 9, Indels: 27
0.82 0.05 0.14
Matches are distributed among these distances:
37 67 0.41
38 1 0.01
39 4 0.02
40 1 0.01
41 32 0.20
43 8 0.05
44 3 0.02
45 19 0.12
46 27 0.17
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (41 bp):
CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCTAACCA
Found at i:14947071 original size:78 final size:79
Alignment explanation
Indices: 14946929--14947157 Score: 320
Period size: 78 Copynumber: 2.8 Consensus size: 79
14946919 CATATGACCT
* **
14946929 CTTATCAC-TTG-TCCTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTACCACTTGA
1 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCTA--C-ACCACTTATCACTTTGTCACTTGA
*
14946992 TCAGATAAGTGTAGCCA
63 TCAGATAAGTGTAACCA
**
14947009 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCTA-ACCACTTATCACTTTGTTTCTTGATCA
1 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCTACACCACTTATCACTTTGTCACTTGATCA
14947073 GATAAGTGTAACCA
66 GATAAGTGTAACCA
14947087 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCTAAAACTACCACTTATCACTTTGTCACTTG
1 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCT---AC-ACCACTTATCACTTTGTCACTTG
14947152 ATCAGA
62 ATCAGA
14947158 AGTACTCAAA
Statistics
Matches: 134, Mismatches: 8, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
78 72 0.54
80 8 0.06
81 4 0.03
82 23 0.17
83 27 0.20
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (79 bp):
CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCTACACCACTTATCACTTTGTCACTTGATCA
GATAAGTGTAACCA
Found at i:14954629 original size:37 final size:37
Alignment explanation
Indices: 14954578--14954725 Score: 251
Period size: 37 Copynumber: 4.0 Consensus size: 37
14954568 TAGCTAGGCT
****
14954578 ACCACTTATCACTTTACCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
14954615 GCCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
14954652 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
14954689 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
14954726 GCTAAAACTA
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:14959173 original size:16 final size:16
Alignment explanation
Indices: 14959149--14959184 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
14959139 ATAAATTATT
*
14959149 AAAAGATTATAAAATA
1 AAAAGATTAAAAAATA
*
14959165 AAAATATTAAAAAATA
1 AAAAGATTAAAAAATA
14959181 AAAA
1 AAAA
14959185 CCGGTTCAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (16 bp):
AAAAGATTAAAAAATA
Found at i:14970337 original size:20 final size:19
Alignment explanation
Indices: 14970314--14970365 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
14970304 ATAAAATAAA
*
14970314 TAAAAATAATTTTTAAAAAT
1 TAAAAAT-ATTTATAAAAAT
*
14970334 TAAAAATATTTATAAAAGT
1 TAAAAATATTTATAAAAAT
*
14970353 TCAAAAT-TTTATA
1 TAAAAATATTTATA
14970366 TACTTTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 6 0.21
19 16 0.55
20 7 0.24
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
TAAAAATATTTATAAAAAT
Found at i:14970363 original size:18 final size:18
Alignment explanation
Indices: 14970321--14970393 Score: 60
Period size: 18 Copynumber: 4.1 Consensus size: 18
14970311 AAATAAAAAT
14970321 AATTTT-TAAAAATTAAA
1 AATTTTATAAAAATTAAA
* *
14970338 AATATTTATAAAAGTTCAA
1 AAT-TTTATAAAAATTAAA
* **
14970357 AATTTTATATACTTTAAA
1 AATTTTATAAAAATTAAA
* *
14970375 AACTATA-AAAAATTAAA
1 AATTTTATAAAAATTAAA
14970392 AA
1 AA
14970394 AAAAACTAAA
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
17 12 0.28
18 19 0.44
19 12 0.28
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.37
Consensus pattern (18 bp):
AATTTTATAAAAATTAAA
Found at i:14972280 original size:20 final size:21
Alignment explanation
Indices: 14972240--14972288 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
14972230 TTTTAGACAT
*
14972240 AAAGGAAGAAGAAATAAATAA
1 AAAGGAAAAAGAAATAAATAA
*
14972261 AAAGGAAAAATAAA-AAATAA
1 AAAGGAAAAAGAAATAAATAA
14972281 AAAGGAAA
1 AAAGGAAA
14972289 TAATGTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (21 bp):
AAAGGAAAAAGAAATAAATAA
Found at i:14972298 original size:21 final size:21
Alignment explanation
Indices: 14972255--14972310 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
14972245 AAGAAGAAAT
14972255 AAATAAAAAGGAAA-AATAAA
1 AAATAAAAAGGAAATAATAAA
**
14972275 AAATAAAAAGGAAATAATGTA
1 AAATAAAAAGGAAATAATAAA
* *
14972296 AAAGAAAAAAGAAAT
1 AAATAAAAAGGAAAT
14972311 TAATTTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 14 0.45
21 17 0.55
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.12
Consensus pattern (21 bp):
AAATAAAAAGGAAATAATAAA
Found at i:14972710 original size:31 final size:30
Alignment explanation
Indices: 14972663--14972720 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
14972653 ATGGTTACTA
*
14972663 AACTGTTCAAAATTTTTCA-TTAAGTCAGTG
1 AACTATTCAAAATTTTT-AGTTAAGTCAGTG
14972693 AACTATTCAAATATTTTTAGTTAAGTCA
1 AACTATTCAAA-ATTTTTAGTTAAGTCA
14972721 TTGGATTGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.41
Consensus pattern (30 bp):
AACTATTCAAAATTTTTAGTTAAGTCAGTG
Found at i:14979806 original size:30 final size:30
Alignment explanation
Indices: 14979738--14979821 Score: 100
Period size: 32 Copynumber: 2.7 Consensus size: 30
14979728 TAATAAAAAT
* *
14979738 AAAAAAT-ATAAAAAATATTTAAATTTTAT
1 AAAAAATCATAAAAAATATTTAAATTCTAC
14979767 ATTAAAAATCATAAAAAA-ATTATAAATTCTAC
1 A--AAAAATCATAAAAAATATT-TAAATTCTAC
14979799 AAAAAATCATAAAAATATATTTA
1 AAAAAATCATAAAAA-ATATTTA
14979822 TAAAATATAT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
29 1 0.02
30 14 0.30
31 12 0.26
32 20 0.43
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (30 bp):
AAAAAATCATAAAAAATATTTAAATTCTAC
Found at i:14979850 original size:62 final size:61
Alignment explanation
Indices: 14979738--14979854 Score: 141
Period size: 62 Copynumber: 1.9 Consensus size: 61
14979728 TAATAAAAAT
**
14979738 AAAAAATATAAAAAATATTTAAATTTTATATTAAAAATCATAAAAAAATTATAAATTCTAC
1 AAAAAATATAAAAAATATTTAAATAATATATTAAAAATCATAAAAAAATTATAAATTCTAC
* *
14979799 AAAAAATCATAAAAATATATTTATAA-AATATA-TAGAAAT-ATAGAAACAATTATAAA
1 AAAAAAT-ATAAAAA-ATATTTA-AATAATATATTAAAAATCATA-AAAAAATTATAAA
14979855 ATTTTATAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
61 10 0.21
62 25 0.52
63 11 0.23
64 2 0.04
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (61 bp):
AAAAAATATAAAAAATATTTAAATAATATATTAAAAATCATAAAAAAATTATAAATTCTAC
Found at i:14979890 original size:19 final size:20
Alignment explanation
Indices: 14979852--14979922 Score: 67
Period size: 20 Copynumber: 3.6 Consensus size: 20
14979842 AAACAATTAT
* * *
14979852 AAAATTTTATAAAGTCGTAA
1 AAAATTATAAAAAATCGTAA
14979872 AAAATTATAAAAAAT-GTAA
1 AAAATTATAAAAAATCGTAA
* *
14979891 AGAAA-TAT-AAAATTCATAA
1 A-AAATTATAAAAAATCGTAA
14979910 AAAATTATAAAAA
1 AAAATTATAAAAA
14979923 TTATCTTACC
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
18 8 0.19
19 15 0.36
20 19 0.45
ACGTcount: A:0.63, C:0.03, G:0.06, T:0.28
Consensus pattern (20 bp):
AAAATTATAAAAAATCGTAA
Done.