Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 44 of 226
Found at i:14979915 original size:11 final size:10
Alignment explanation
Indices: 14979869--14979926 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
14979859 TATAAAGTCG
14979869 TAAAAAATTA
1 TAAAAAATTA
14979879 TAAAAAATGTA
1 TAAAAAAT-TA
*
14979890 -AAGAAA-TA
1 TAAAAAATTA
14979898 T--AAAATTCA
1 TAAAAAATT-A
14979907 TAAAAAATTA
1 TAAAAAATTA
14979917 T-AAAAATTA
1 TAAAAAATTA
14979926 T
1 T
14979927 CTTACCGAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 13
0.73 0.04 0.24
Matches are distributed among these distances:
7 3 0.08
8 3 0.08
9 11 0.28
10 15 0.38
11 8 0.20
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:14979921 original size:9 final size:9
Alignment explanation
Indices: 14979871--14979926 Score: 51
Period size: 9 Copynumber: 6.0 Consensus size: 9
14979861 TAAAGTCGTA
14979871 AAAAATTAT
1 AAAAATTAT
* *
14979880 AAAAAATGT
1 AAAAATTAT
*
14979889 AAAGAAATAT
1 AAA-AATTAT
14979899 -AAAATTCAT
1 AAAAATT-AT
14979908 AAAAAATTAT
1 -AAAAATTAT
14979918 AAAAATTAT
1 AAAAATTAT
14979927 CTTACCGAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 3 0.08
9 23 0.59
10 7 0.18
11 6 0.15
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.29
Consensus pattern (9 bp):
AAAAATTAT
Found at i:14980627 original size:19 final size:20
Alignment explanation
Indices: 14980617--14980671 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
14980607 TTTATAATTT
14980617 TTTTCTATTTTT-TAATAAA
1 TTTTCTATTTTTATAATAAA
*
14980636 TTTTCTATTTTTATTA-AAA
1 TTTTCTATTTTTATAATAAA
**
14980655 TTTAGTAATTTTTATAA
1 TTTTCT-ATTTTTATAA
14980672 CTTTTATTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 19 0.63
20 11 0.37
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.62
Consensus pattern (20 bp):
TTTTCTATTTTTATAATAAA
Found at i:14987332 original size:31 final size:31
Alignment explanation
Indices: 14987292--14987356 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
14987282 TACAAATCAT
* * *
14987292 TCACTAAATTATTCAAAAGTTTTCATTTAAG
1 TCACAAAATTATGCAAAAGTTTTCATCTAAG
*
14987323 TCACAAAATTATGCAAAAGTTTTTATCTAAG
1 TCACAAAATTATGCAAAAGTTTTCATCTAAG
14987354 TCA
1 TCA
14987357 TTAAACTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (31 bp):
TCACAAAATTATGCAAAAGTTTTCATCTAAG
Found at i:14988104 original size:2 final size:2
Alignment explanation
Indices: 14988097--14988124 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14988087 CCCCTTTCCC
14988097 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14988125 ATAAATAGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:14998038 original size:24 final size:26
Alignment explanation
Indices: 14997999--14998062 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 26
14997989 TCACGTGGCA
** *
14997999 ATTAAATTTATTTTAAATAA-A-AAT
1 ATTAAATTTAAATTAAAAAATATAAT
14998023 ATTAAATTTAAATTAAAAAATTATAAT
1 ATTAAATTTAAATTAAAAAA-TATAAT
14998050 ATTAAATATTAAA
1 ATTAAAT-TTAAA
14998063 AAATTAAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 17 0.52
26 1 0.03
27 10 0.30
28 5 0.15
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (26 bp):
ATTAAATTTAAATTAAAAAATATAAT
Found at i:14998045 original size:8 final size:8
Alignment explanation
Indices: 14998032--14998075 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
14998022 TATTAAATTT
14998032 AAATTAAA
1 AAATTAAA
*
14998040 AAATTATA
1 AAATTAAA
*
14998048 ATATT-AA
1 AAATTAAA
*
14998055 ATATTAAA
1 AAATTAAA
14998063 AAATTAAA
1 AAATTAAA
14998071 AAATT
1 AAATT
14998076 CTATTGACTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
7 6 0.19
8 25 0.81
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (8 bp):
AAATTAAA
Found at i:14998259 original size:22 final size:21
Alignment explanation
Indices: 14998204--14998262 Score: 57
Period size: 22 Copynumber: 2.8 Consensus size: 21
14998194 ATTATATTGA
*
14998204 TTAAAAATGTA-AAAAAAAAC
1 TTAAAAATATATAAAAAAAAC
* *
14998224 ATATATAATATATAAAAAAAAC
1 TTA-AAAATATATAAAAAAAAC
*
14998246 TTTAAAAATTTATAAAA
1 -TTAAAAATATATAAAA
14998263 TTCTAAAATG
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
20 2 0.07
21 6 0.20
22 20 0.67
23 2 0.07
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (21 bp):
TTAAAAATATATAAAAAAAAC
Found at i:15011760 original size:21 final size:23
Alignment explanation
Indices: 15011734--15011777 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
15011724 ATATAAACCT
15011734 TAAAAA-T-ATAAAATAAATATA
1 TAAAAATTCATAAAATAAATATA
*
15011755 TAAAAATTCATAAAATATATATA
1 TAAAAATTCATAAAATAAATATA
15011778 ATCTAAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 1 0.05
23 13 0.65
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (23 bp):
TAAAAATTCATAAAATAAATATA
Found at i:15011778 original size:21 final size:20
Alignment explanation
Indices: 15011734--15011778 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 20
15011724 ATATAAACCT
15011734 TAAAAATATAAAATAAATATA
1 TAAAAATATAAAAT-AATATA
15011755 TAAAAATTCATAAAAT-ATATA
1 TAAAAA-T-ATAAAATAATATA
15011776 TAA
1 TAA
15011779 TCTAAAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 14 0.64
22 1 0.05
23 7 0.32
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (20 bp):
TAAAAATATAAAATAATATA
Found at i:15012510 original size:41 final size:41
Alignment explanation
Indices: 15012448--15012679 Score: 245
Period size: 41 Copynumber: 6.0 Consensus size: 41
15012438 CATCGACCTT
* * * *
15012448 TCGGGGCTTTAGCGGCATTTTTGAAAAAGCGCTGTTAATGC
1 TCGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
*
15012489 TCGGGTATTTAGCGGCGTTTTT-----------GCTAATGC
1 TCGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * *
15012519 TTGGGTCTTTAGTGGCGTTTTTGAAAAGGCGCCGCTAATGC
1 TCGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * * *
15012560 TCGGGTCTTTAGTGGTGTTTTTGAAAAGGCACCGCTAATGC
1 TCGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
*
15012601 TCGGGTCTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAAT-C
1 TCGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* *
15012641 TCGTGTCTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAAT
1 TCGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAAT
15012680 CCTGAATTGA
Statistics
Matches: 164, Mismatches: 16, Indels: 23
0.81 0.08 0.11
Matches are distributed among these distances:
30 26 0.16
40 39 0.24
41 99 0.60
ACGTcount: A:0.19, C:0.18, G:0.29, T:0.34
Consensus pattern (41 bp):
TCGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
Found at i:15012519 original size:30 final size:30
Alignment explanation
Indices: 15012483--15012541 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
15012473 AAAGCGCTGT
15012483 TAATGCTCGGGTATTTAGCGGCGTTTTTGC
1 TAATGCTCGGGTATTTAGCGGCGTTTTTGC
* * *
15012513 TAATGCTTGGGTCTTTAGTGGCGTTTTTG
1 TAATGCTCGGGTATTTAGCGGCGTTTTTG
15012542 AAAAGGCGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.12, C:0.14, G:0.31, T:0.44
Consensus pattern (30 bp):
TAATGCTCGGGTATTTAGCGGCGTTTTTGC
Found at i:15012571 original size:71 final size:71
Alignment explanation
Indices: 15012448--15012663 Score: 218
Period size: 71 Copynumber: 2.9 Consensus size: 71
15012438 CATCGACCTT
* * * * *
15012448 TCGGGGCTTTAGCGGCATTTTTGAAAAAGCGCTGTTAATGCTCGGGTATTTAGCGGCGTTTTTGC
1 TCGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGTCTTTAGCGGCGTTTTTGC
15012513 TAATGC
66 TAATGC
* * * * *
15012519 TTGGGTCTTTAGTGGCGTTTTTGAAAAGGCGCCGCTAATGCTCGGGTCTTTAGTGGTGTTTTTGA
1 TCGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGTCTTTAGCGGCGTTTTT--
15012584 AAAGGCACCGCTAATGC
64 ---------GCTAATGC
* *
15012601 TCGGGTCTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAAT-CTCGTGTCTTTAGCGGCGTTTTTG
1 TCGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGTCTTTAGCGGCGTTTTTG
15012664 AAAAAGTGCC
Statistics
Matches: 117, Mismatches: 17, Indels: 23
0.75 0.11 0.15
Matches are distributed among these distances:
70 1 0.01
71 53 0.45
81 20 0.17
82 43 0.37
ACGTcount: A:0.17, C:0.18, G:0.30, T:0.36
Consensus pattern (71 bp):
TCGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGTCTTTAGCGGCGTTTTTGC
TAATGC
Found at i:15022671 original size:24 final size:24
Alignment explanation
Indices: 15022636--15022682 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
15022626 ATGAAACACA
*
15022636 ATGATTTGAGCT-CTAAATTTGAC
1 ATGATTTGAGCTACAAAATTTGAC
15022659 ATGATTATGAGCTACAAAATTTGA
1 ATGATT-TGAGCTACAAAATTTGA
15022683 GGAATTCAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 6 0.29
24 6 0.29
25 9 0.43
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (24 bp):
ATGATTTGAGCTACAAAATTTGAC
Found at i:15025453 original size:20 final size:22
Alignment explanation
Indices: 15025414--15025455 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
15025404 TCATTGGAAA
15025414 TTTAATAAATTATTAAGGGTAAT
1 TTTAATAAATTATT-AGGGTAAT
15025437 TTTAA-AAATTATT-GGGTAA
1 TTTAATAAATTATTAGGGTAA
15025456 AGTGATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
22 8 0.42
23 5 0.26
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (22 bp):
TTTAATAAATTATTAGGGTAAT
Found at i:15026397 original size:25 final size:26
Alignment explanation
Indices: 15026343--15026411 Score: 65
Period size: 25 Copynumber: 2.7 Consensus size: 26
15026333 AGACACACCA
* *
15026343 CAGCTCTCATGAGCTTCTCGATACTT
1 CAGCTCGCATGAGCTTCTCCATACTT
15026369 -AGCTCGCATGAGCTTC-CCATTA-TT
1 CAGCTCGCATGAGCTTCTCCA-TACTT
*
15026393 CAGCTCAG-AGGAGCTTCTC
1 CAGCTC-GCATGAGCTTCTC
15026412 GTTTACAGCT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
24 4 0.11
25 30 0.83
26 2 0.06
ACGTcount: A:0.20, C:0.30, G:0.19, T:0.30
Consensus pattern (26 bp):
CAGCTCGCATGAGCTTCTCCATACTT
Found at i:15028658 original size:18 final size:17
Alignment explanation
Indices: 15028629--15028662 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
15028619 TAGTTGTAAA
15028629 TTAAATTATAATTATTT
1 TTAAATTATAATTATTT
15028646 TTAAATGTATAATTATT
1 TTAAAT-TATAATTATT
15028663 AGAACTCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (17 bp):
TTAAATTATAATTATTT
Found at i:15033522 original size:17 final size:18
Alignment explanation
Indices: 15033489--15033522 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15033479 TGTGGTATCA
*
15033489 ATACCACCTGGAAAAATG
1 ATACCACCTGCAAAAATG
15033507 ATACCACCT-CAAAAAT
1 ATACCACCTGCAAAAAT
15033523 TATCGGTACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.47, C:0.26, G:0.09, T:0.18
Consensus pattern (18 bp):
ATACCACCTGCAAAAATG
Found at i:15034342 original size:39 final size:38
Alignment explanation
Indices: 15034220--15034350 Score: 129
Period size: 39 Copynumber: 3.4 Consensus size: 38
15034210 GTTCACTTTT
* * * *
15034220 AAGCATATATCATATTACACATATAATCACCTAACTTAC
1 AAGCATATATCACATTACTCATAAAATCACATAACTT-C
* *
15034259 AAGCATATATCACCA-TACTCATAAAATCTCATAACGTTT
1 AAGCATATATCA-CATTACTCATAAAATCACATAAC-TTC
* * *
15034298 GAGCATATGTCACATTACTCGTAAAATCACATAACATTC
1 AAGCATATATCACATTACTCATAAAATCACATAAC-TTC
*
15034337 AAGCATATACCACA
1 AAGCATATATCACA
15034351 ATAGTCTAAA
Statistics
Matches: 74, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
38 2 0.03
39 69 0.93
40 3 0.04
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (38 bp):
AAGCATATATCACATTACTCATAAAATCACATAACTTC
Found at i:15040456 original size:28 final size:28
Alignment explanation
Indices: 15040412--15040480 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 28
15040402 ATTATAAATT
*
15040412 TTTTAAAGAATTAAATTATAGAA-TTATTTC
1 TTTTAAAGAAAT-AATTAT-GAATTTA-TTC
*
15040442 TTTTAAA-AAATAATTATGAATTTATTG
1 TTTTAAAGAAATAATTATGAATTTATTC
15040469 TTTTAAAGAAAT
1 TTTTAAAGAAAT
15040481 CAAATTTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
27 12 0.34
28 13 0.37
29 3 0.09
30 7 0.20
ACGTcount: A:0.45, C:0.01, G:0.07, T:0.46
Consensus pattern (28 bp):
TTTTAAAGAAATAATTATGAATTTATTC
Found at i:15040472 original size:27 final size:29
Alignment explanation
Indices: 15040412--15040480 Score: 81
Period size: 27 Copynumber: 2.4 Consensus size: 29
15040402 ATTATAAATT
*
15040412 TTTTAAAGAATTAAATTATAGAATTATTTC
1 TTTTAAAGAAAT-AATTATAGAATTATTTC
*
15040442 TTTTAAA-AAATAATTAT-GAATT-TATTG
1 TTTTAAAGAAATAATTATAGAATTAT-TTC
15040469 TTTTAAAGAAAT
1 TTTTAAAGAAAT
15040481 CAAATTTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
26 1 0.03
27 14 0.40
28 10 0.29
29 3 0.09
30 7 0.20
ACGTcount: A:0.45, C:0.01, G:0.07, T:0.46
Consensus pattern (29 bp):
TTTTAAAGAAATAATTATAGAATTATTTC
Found at i:15041047 original size:17 final size:18
Alignment explanation
Indices: 15041015--15041048 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15041005 TATTAAAATT
15041015 AAAAAATCAATAATTTAA
1 AAAAAATCAATAATTTAA
*
15041033 AAAAAATGAAT-ATTTA
1 AAAAAATCAATAATTTA
15041049 TTTTGATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (18 bp):
AAAAAATCAATAATTTAA
Found at i:15051712 original size:30 final size:30
Alignment explanation
Indices: 15051676--15051734 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
15051666 AAGGAAATAA
15051676 ATCCTAATTTCCTAAGAATCAGTAATTGAT
1 ATCCTAATTTCCTAAGAATCAGTAATTGAT
*
15051706 ATCCTAATTTCCTAAGAATTAGTAATTGA
1 ATCCTAATTTCCTAAGAATCAGTAATTGA
15051735 GATTAGTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (30 bp):
ATCCTAATTTCCTAAGAATCAGTAATTGAT
Found at i:15056356 original size:30 final size:30
Alignment explanation
Indices: 15056320--15056402 Score: 166
Period size: 30 Copynumber: 2.8 Consensus size: 30
15056310 GGAAATAAAT
15056320 CCTAATTTCCTAAGAATCAGTAATTGATAA
1 CCTAATTTCCTAAGAATCAGTAATTGATAA
15056350 CCTAATTTCCTAAGAATCAGTAATTGATAA
1 CCTAATTTCCTAAGAATCAGTAATTGATAA
15056380 CCTAATTTCCTAAGAATCAGTAA
1 CCTAATTTCCTAAGAATCAGTAA
15056403 CTGAGATTAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.33
Consensus pattern (30 bp):
CCTAATTTCCTAAGAATCAGTAATTGATAA
Found at i:15063182 original size:16 final size:16
Alignment explanation
Indices: 15063146--15063176 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
15063136 AGCATAGAAG
15063146 TTTATATAAATTTAAA
1 TTTATATAAATTTAAA
15063162 TTTATATAAATTTAA
1 TTTATATAAATTTAA
15063177 TATTATGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTATATAAATTTAAA
Found at i:15065035 original size:6 final size:6
Alignment explanation
Indices: 15065024--15065054 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
15065014 TATTGTTGAT
15065024 GGCAAC GGCAAC GGCAAC GGCAAC GGCAAC G
1 GGCAAC GGCAAC GGCAAC GGCAAC GGCAAC G
15065055 ACGACAATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.32, C:0.32, G:0.35, T:0.00
Consensus pattern (6 bp):
GGCAAC
Found at i:15075152 original size:29 final size:29
Alignment explanation
Indices: 15075110--15075168 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
15075100 AAGATACTTC
15075110 AACAAAGAAATTTTAGCTTCCATAAAACA
1 AACAAAGAAATTTTAGCTTCCATAAAACA
15075139 AACAAAGAAATTTTAGCTTCCATAAAACA
1 AACAAAGAAATTTTAGCTTCCATAAAACA
15075168 A
1 A
15075169 CTTACAGCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.53, C:0.17, G:0.07, T:0.24
Consensus pattern (29 bp):
AACAAAGAAATTTTAGCTTCCATAAAACA
Found at i:15076077 original size:12 final size:12
Alignment explanation
Indices: 15076060--15076084 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15076050 TTCATTTTAC
15076060 TTGAATTAATTT
1 TTGAATTAATTT
15076072 TTGAATTAATTT
1 TTGAATTAATTT
15076084 T
1 T
15076085 AACATATCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (12 bp):
TTGAATTAATTT
Found at i:15076421 original size:42 final size:42
Alignment explanation
Indices: 15076362--15076464 Score: 206
Period size: 42 Copynumber: 2.5 Consensus size: 42
15076352 ATTTTTCAGC
15076362 AAATCGCGTCCACGTCAGCGCGATTTCAGGGGACGCGCCAGG
1 AAATCGCGTCCACGTCAGCGCGATTTCAGGGGACGCGCCAGG
15076404 AAATCGCGTCCACGTCAGCGCGATTTCAGGGGACGCGCCAGG
1 AAATCGCGTCCACGTCAGCGCGATTTCAGGGGACGCGCCAGG
15076446 AAATCGCGTCCACGTCAGC
1 AAATCGCGTCCACGTCAGC
15076465 AACTCGCGCT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.22, C:0.32, G:0.31, T:0.15
Consensus pattern (42 bp):
AAATCGCGTCCACGTCAGCGCGATTTCAGGGGACGCGCCAGG
Found at i:15078789 original size:21 final size:21
Alignment explanation
Indices: 15078765--15078813 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
15078755 AGATGCCGTA
* * *
15078765 CCGGAAGAACCAGAATCCCCG
1 CCGGAAGAACAACAACCCCCG
* *
15078786 CCGGAGGAACAACAGCCCCCG
1 CCGGAAGAACAACAACCCCCG
15078807 CCGGAAG
1 CCGGAAG
15078814 CTAGAGAAAG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.31, C:0.39, G:0.29, T:0.02
Consensus pattern (21 bp):
CCGGAAGAACAACAACCCCCG
Found at i:15078972 original size:25 final size:25
Alignment explanation
Indices: 15078938--15078985 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
15078928 TGTTTTGATA
15078938 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
15078963 TTATTTGATGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
15078986 ATTTTTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.40
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:15079080 original size:22 final size:22
Alignment explanation
Indices: 15079055--15079156 Score: 109
Period size: 22 Copynumber: 4.6 Consensus size: 22
15079045 CCTAATTTAA
15079055 TTAAAAACCTTAAACCCTAAAC
1 TTAAAAACCTTAAACCCTAAAC
* * *
15079077 TTAAAAACCCTAACCCCTTAAC
1 TTAAAAACCTTAAACCCTAAAC
* *
15079099 TTAAAAACCTT-AA-CTTAATTTAA
1 TTAAAAACCTTAAACCCTAA---AC
*
15079122 TTAAAAACCCTAAACCCTAAAC
1 TTAAAAACCTTAAACCCTAAAC
15079144 TTAAAAACCTTAA
1 TTAAAAACCTTAA
15079157 CCTAATTAAA
Statistics
Matches: 63, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
20 3 0.05
21 1 0.02
22 42 0.67
23 11 0.17
24 2 0.03
25 4 0.06
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.26
Consensus pattern (22 bp):
TTAAAAACCTTAAACCCTAAAC
Found at i:15079126 original size:45 final size:46
Alignment explanation
Indices: 15079030--15079417 Score: 351
Period size: 45 Copynumber: 8.5 Consensus size: 46
15079020 TAATACCTTA
15079030 AATTAAAAACCCTAACCTAATTTAA-TTAAAAACCTTAAACCCTAA---
1 AATTAAAAACCCTAACCTAA-TTAACTTAAAAACCTT-AA-CCTAATTT
* ** *
15079075 ACTTAAAAACCCTAACC-CCTTAACTTAAAAACCTTAACTTAATTT
1 AATTAAAAACCCTAACCTAATTAACTTAAAAACCTTAACCTAATTT
*
15079120 AATTAAAAACCCTAAACCCT-A--AACTTAAAAACCTTAACCTAATTA
1 AATTAAAAACCCT-AA-CCTAATTAACTTAAAAACCTTAACCTAATTT
* *
15079165 AATTAAAAACTCTAACCTAATTTAA-TTAAAAACTCTAAACCCTAA---
1 AATTAAAAACCCTAACCTAA-TTAACTTAAAAAC-CTTAA-CCTAATTT
* * *
15079210 ACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTAACTTAAAAACCTTAACCTAATTT
* * ***
15079256 AATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAA-CTTCCTT
1 AATTAAAAACCCTAACCTAATTAACTTAAAAACCTTAACCTAATTT
* *
15079301 AACTTAAAAACCCTAACCTAATTAACTTAAAAA-CTCTAACATAATTA
1 AA-TTAAAAACCCTAACCTAATTAACTTAAAAACCT-TAACCTAATTT
* *
15079348 AATTAAAAACCCTAAACCCT-A--AACTTAAAAGCCCTAACCTAATTT
1 AATTAAAAACCCT-AA-CCTAATTAACTTAAAAACCTTAACCTAATTT
* *
15079393 AATTAAAAACTCTAAACTAAATTAA
1 AATTAAAAACCCTAACCT-AATTAA
15079418 TAATTTTACT
Statistics
Matches: 285, Mismatches: 31, Indels: 52
0.77 0.08 0.14
Matches are distributed among these distances:
42 4 0.01
43 16 0.06
44 23 0.08
45 126 0.44
46 91 0.32
47 17 0.06
48 8 0.03
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.28
Consensus pattern (46 bp):
AATTAAAAACCCTAACCTAATTAACTTAAAAACCTTAACCTAATTT
Found at i:15079180 original size:23 final size:23
Alignment explanation
Indices: 15079027--15079417 Score: 358
Period size: 23 Copynumber: 17.2 Consensus size: 23
15079017 CATTAATACC
15079027 TTAAATTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
* *
15079050 TTTAATTAAAAACCTTAAACCCT-A
1 TTAAATTAAAAACCCT-AA-CCTAA
* **
15079074 --AACTTAAAAACCCTAACC-CC
1 TTAAATTAAAAACCCTAACCTAA
* * *
15079094 TTAACTTAAAAACCTTAACTTAA
1 TTAAATTAAAAACCCTAACCTAA
*
15079117 TTTAATTAAAAACCCTAAACCCT-A
1 TTAAATTAAAAACCCT-AA-CCTAA
* *
15079141 --AACTTAAAAACCTTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
*
15079162 TTAAATTAAAAACTCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
* *
15079185 TTTAATTAAAAACTCTAAACCCT-A
1 TTAAATTAAAAACCCT-AA-CCTAA
*
15079209 --AACTTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
15079230 TTAAATTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
*
15079253 TTTAATTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
* **
15079276 TTAAATTAAAAACCCTAACTTCC
1 TTAAATTAAAAACCCTAACCTAA
*
15079299 TTAACTTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
* * *
15079322 TTAACTTAAAAACTCTAACATAA
1 TTAAATTAAAAACCCTAACCTAA
15079345 TTAAATTAAAAACCCTAAACCCT-A
1 TTAAATTAAAAACCCT-AA-CCTAA
* *
15079369 --AACTTAAAAGCCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
* * *
15079390 TTTAATTAAAAACTCTAAACTAAA
1 TTAAATTAAAAACCCTAACCT-AA
15079414 TTAA
1 TTAA
15079418 TAATTTTACT
Statistics
Matches: 299, Mismatches: 47, Indels: 43
0.77 0.12 0.11
Matches are distributed among these distances:
20 11 0.04
21 11 0.04
22 61 0.20
23 189 0.63
24 17 0.06
25 10 0.03
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.28
Consensus pattern (23 bp):
TTAAATTAAAAACCCTAACCTAA
Found at i:15079203 original size:68 final size:68
Alignment explanation
Indices: 15079027--15079409 Score: 451
Period size: 68 Copynumber: 5.6 Consensus size: 68
15079017 CATTAATACC
15079027 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAAC-CTTAAACCCTAAACTTAAAAACCCTAAC
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACTC-TAAACCCTAAACTTAAAAACCCTAAC
**
15079091 C-CC
65 CTAA
* * * * *
15079094 TTAACTTAAAAACCTTAACTTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCTTAACC
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACTCTAAACCCTAAACTTAAAAACCCTAACC
15079159 TAA
66 TAA
*
15079162 TTAAATTAAAAACTCTAACCTAATTTAATTAAAAACTCTAAACCCTAAACTTAAAAACCCTAACC
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACTCTAAACCCTAAACTTAAAAACCCTAACC
15079227 TAA
66 TAA
* *
15079230 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCT-AA-CCTAATTAAATTAAAAACCCTA
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACTCTAAACCCT-A--AACTTAAAAACCCTA
* **
15079293 ACTTCC
63 ACCTAA
* ***
15079299 TTAACTTAAAAACCCTAACCTAA-TTAACTTAAAAACTCTAACATAATTAAA-TTAAAAACCCTA
1 TTAAATTAAAAACCCTAACCTAATTTAA-TTAAAAACTCTAA-A-CCCTAAACTTAAAAACCCT-
15079362 AACCCT-A
62 AA-CCTAA
* *
15079369 --AACTTAAAAGCCCTAACCTAATTTAATTAAAAACTCTAAAC
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACTCTAAAC
15079410 TAAATTAATA
Statistics
Matches: 277, Mismatches: 26, Indels: 27
0.84 0.08 0.08
Matches are distributed among these distances:
66 3 0.01
67 63 0.23
68 137 0.49
69 64 0.23
70 5 0.02
71 3 0.01
72 1 0.00
73 1 0.00
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.28
Consensus pattern (68 bp):
TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACTCTAAACCCTAAACTTAAAAACCCTAACC
TAA
Found at i:15079555 original size:116 final size:116
Alignment explanation
Indices: 15079412--15079655 Score: 427
Period size: 116 Copynumber: 2.1 Consensus size: 116
15079402 CTCTAAACTA
* **
15079412 AATTAATAATTTTACTTTCACATAATGTTAGATTTGGAAAAATGTTTTTTCCTGGTACTAACAAT
1 AATTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATG-TTTTGACTGGTACTAACAAT
*
15079477 TAATAATTTTATATAATTTGATAA-TTTTACTAATCATTAATACAATTTATC
65 TAATAATTTTATATAATTTGATAATTTTTACTAACCATTAATACAATTTATC
15079528 AATTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATT
1 AATTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATT
*
15079593 AATAATTTTATATAATTTGATAATTTTTAGTAACCATTAATACAATTTATC
66 AATAATTTTATATAATTTGATAATTTTTACTAACCATTAATACAATTTATC
15079644 AATTAATAATTT
1 AATTAATAATTT
15079656 CACAAACTTA
Statistics
Matches: 122, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
115 42 0.34
116 80 0.66
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (116 bp):
AATTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATT
AATAATTTTATATAATTTGATAATTTTTACTAACCATTAATACAATTTATC
Found at i:15082887 original size:124 final size:124
Alignment explanation
Indices: 15082666--15083013 Score: 500
Period size: 123 Copynumber: 2.8 Consensus size: 124
15082656 CAAACATGTT
* * ** * * *
15082666 ACTGTAGCAAAAACGCAATTACGAGGGCGCGATTTTCAAAAATTTTTCTCAAATAGCATCCCGCT
1 ACTGTAGCAAAAGCGCGACCACGAGGGCGCGATTTT-ACAAATTCTTCTCAAATAGCATCCTGCT
15082731 AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTATTCCATGACCG
65 AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTATTCCATGACCG
* ** *
15082791 ACTGTAGCAAAAGCGCGACCACGAGGGCGCAATTTTACAAATTCTTCTTGAATAGCATCCTTCTA
1 ACTGTAGCAAAAGCGCGACCACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGCATCCTGCTA
** * *
15082856 GAAGCGATTAAATACTATTTGCTCAGAAACGTC-AAAAAAATTATTTCTTCCATGACCT
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTATTCCATGACCG
* * *
15082914 ACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTA
1 ACTGTAGCAAAAGCGCGACCACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGCATCCTGCTA
* *
15082979 AAAGCGATTTTATACTATTTGATCAGAAACGTCAA
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAA
15083014 CTCAAAACTA
Statistics
Matches: 196, Mismatches: 26, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
123 110 0.56
124 55 0.28
125 31 0.16
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (124 bp):
ACTGTAGCAAAAGCGCGACCACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGCATCCTGCTA
GAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTATTCCATGACCG
Found at i:15088962 original size:34 final size:34
Alignment explanation
Indices: 15088907--15088985 Score: 81
Period size: 34 Copynumber: 2.3 Consensus size: 34
15088897 AGAATTTAAT
* * *
15088907 TATGCTTTTAACAGAATAATATGGTAGC-AATCAC
1 TATGCTTATAACAGAATAATATAGTAGCAAAT-AA
* *
15088941 TATGCTTATAACA-ATTCAATATAGTGGCAAATAA
1 TATGCTTATAACAGAAT-AATATAGTAGCAAATAA
15088975 TATGCTTATAA
1 TATGCTTATAA
15088986 TAGATCAACT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
33 2 0.05
34 33 0.87
35 3 0.08
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.34
Consensus pattern (34 bp):
TATGCTTATAACAGAATAATATAGTAGCAAATAA
Found at i:15091462 original size:41 final size:41
Alignment explanation
Indices: 15091417--15091561 Score: 229
Period size: 41 Copynumber: 3.5 Consensus size: 41
15091407 GACTTTAAGT
*
15091417 CTAGCAGGCTAAGTACCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
*
15091458 CTAGCAGGCTAAGTGCTGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* * *
15091499 CTAGCAAGCTAAGTGCCGGTGAT-TGGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCT-GAATCAGGTTATAAAC
15091540 CTAGCAGGCTAAGTGCCGGTGA
1 CTAGCAGGCTAAGTGCCGGTGA
15091562 ATATGTTAAA
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
40 1 0.01
41 95 0.99
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:15095989 original size:21 final size:21
Alignment explanation
Indices: 15095950--15095989 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
15095940 TTTATTTTAA
* *
15095950 AATATATATGATATAGAATAT
1 AATATAAATGAAATAGAATAT
*
15095971 AATATAAATGAAATGGAAT
1 AATATAAATGAAATAGAAT
15095990 TACTGATAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (21 bp):
AATATAAATGAAATAGAATAT
Found at i:15096333 original size:20 final size:18
Alignment explanation
Indices: 15096292--15096342 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
15096282 CTCTTTAGTT
*
15096292 TTTTTTTTTCATTTCTCT
1 TTTTTTTTTCATTTCTCG
*
15096310 TTTTTTTTTCATTTTTCAG
1 TTTTTTTTTCATTTCTC-G
* *
15096329 GTTTTTTTTAATTT
1 TTTTTTTTTCATTT
15096343 GTGAATCGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
18 16 0.57
19 12 0.43
ACGTcount: A:0.10, C:0.10, G:0.04, T:0.76
Consensus pattern (18 bp):
TTTTTTTTTCATTTCTCG
Found at i:15108144 original size:15 final size:15
Alignment explanation
Indices: 15108124--15108152 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15108114 TACCCAATGA
15108124 TTCCATCTCTAGTTC
1 TTCCATCTCTAGTTC
15108139 TTCCATCTCTAGTT
1 TTCCATCTCTAGTT
15108153 TTTCAAAGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.31, G:0.07, T:0.48
Consensus pattern (15 bp):
TTCCATCTCTAGTTC
Found at i:15109805 original size:17 final size:17
Alignment explanation
Indices: 15109778--15110324 Score: 380
Period size: 17 Copynumber: 30.7 Consensus size: 17
15109768 TTTAAAAAAA
*
15109778 ACGAAAGTTTTTGAAAC
1 ACGAAAATTTTTGAAAC
* *
15109795 ACGAGAATTTTTGAAAAT
1 ACGAAAATTTTTG-AAAC
15109813 ACGAAAATTTTTGAAAC
1 ACGAAAATTTTTGAAAC
* ***
15109830 ATGAAAATTTAAAAAAC
1 ACGAAAATTTTTGAAAC
*
15109847 ACGACAATTTTTGAAAC
1 ACGAAAATTTTTGAAAC
* *
15109864 ACGAGAATTTTTTTTAAAAC
1 ACGA-AA--ATTTTTGAAAC
** *
15109884 ATAAAAATTTTTAAAAC
1 ACGAAAATTTTTGAAAC
* *
15109901 ATGAAAATTTGTGAAAC
1 ACGAAAATTTTTGAAAC
* *
15109918 ACGAGAATTGTTGAAAAC
1 ACGAAAATTTTTG-AAAC
15109936 ACGAAAATTTTTGAAAC
1 ACGAAAATTTTTGAAAC
15109953 ACGAAAATTTTTAGAAAAC
1 ACGAAAATTTTT-G-AAAC
*
15109972 ACGAAAATTTTTTAAAAC
1 ACGAAAA-TTTTTGAAAC
15109990 ACGAAAATTTTTGGAAAC
1 ACGAAAATTTTT-GAAAC
*
15110008 ACGAAAATTTTTAAAAC
1 ACGAAAATTTTTGAAAC
* *
15110025 ACGACAATTTTTGAAAT
1 ACGAAAATTTTTGAAAC
* * *
15110042 AGGAGAATTTTTTCAAAAC
1 ACGA-AAATTTTT-GAAAC
* *
15110061 ACAAAAATTTTTAAAAC
1 ACGAAAATTTTTGAAAC
*
15110078 ACGAAAATTTGTGAAAC
1 ACGAAAATTTTTGAAAC
*
15110095 ACTGAAATTTTTTGAAAAC
1 AC-GAAAATTTTTG-AAAC
*
15110114 ATGAAAATTTTTGAAAC
1 ACGAAAATTTTTGAAAC
*
15110131 ACGGAAATTTTTAGAAAAC
1 ACGAAAATTTTT-G-AAAC
* *
15110150 ACAAAAATTTTTTAAAATC
1 ACGAAAA-TTTTTGAAA-C
*
15110169 ACTG-GAATTTTTGGAAAC
1 AC-GAAAATTTTT-GAAAC
* *
15110187 ACGAAGATTTTTGAAAAA
1 ACGAAAATTTTTG-AAAC
* * * *
15110205 ATGAAGATTTTTTAAAT
1 ACGAAAATTTTTGAAAC
*
15110222 GC-AAGAATTTTTCGAAAAC
1 ACGAA-AATTTTT-G-AAAC
* *
15110241 ACGAAAAAAATTTT-AAAA
1 ACG--AAAATTTTTGAAAC
* * *
15110259 ATGGAATTTTTTGAAAAC
1 ACGAAAATTTTTG-AAAC
*
15110277 ACGAGAATTTTTGAAAAC
1 ACGAAAATTTTTG-AAAC
* *
15110295 ATGAAAATATTTGAAAC
1 ACGAAAATTTTTGAAAC
*
15110312 ATCGGAAATTTTT
1 A-CGAAAATTTTT
15110325 TTTAAAACGC
Statistics
Matches: 413, Mismatches: 87, Indels: 59
0.74 0.16 0.11
Matches are distributed among these distances:
16 8 0.02
17 169 0.41
18 163 0.39
19 44 0.11
20 21 0.05
21 6 0.01
22 2 0.00
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.31
Consensus pattern (17 bp):
ACGAAAATTTTTGAAAC
Found at i:15109894 original size:89 final size:88
Alignment explanation
Indices: 15109791--15110324 Score: 488
Period size: 89 Copynumber: 6.0 Consensus size: 88
15109781 AAAGTTTTTG
* * * * * ** *
15109791 AAACACGAGAATTTTTGAAAATACGAAAATTTTTGAAACATGAAAATTTAAAAAACACGACAATT
1 AAACACAAAAATTTTT-AAAACACGAAAATTTGTGAAACACGAAAATTTTGAAAACACGAAAATT
* **
15109856 TTTGAAACACGAGAATTTTTTTTA
65 TTTGAAACACGAGAAATTTTTAGA
* * *
15109880 AAACATAAAAATTTTTAAAACATGAAAATTTGTGAAACACGAGAATTGTTGAAAACACGAAAATT
1 AAACACAAAAATTTTTAAAACACGAAAATTTGTGAAACACGAAAATT-TTGAAAACACGAAAATT
15109945 TTTGAAACACGA-AAATTTTTAGA
65 TTTGAAACACGAGAAATTTTTAGA
* * * *
15109968 AAACACGAAAATTTTTTAAAACACGAAAATTTTTGGAAACACGAAAATTTTTAAAACACGACAAT
1 AAACAC-AAAAATTTTTAAAACACGAAAATTTGT-GAAACACGAAAATTTTGAAAACACGAAAAT
* * **
15110033 TTTTGAAATAGGAG-AATTTTTTCA
64 TTTTGAAACACGAGAAATTTTTAGA
* *
15110057 AAACACAAAAATTTTTAAAACACGAAAATTTGTGAAACACTGAAATTTTTTGAAAACATGAAAAT
1 AAACACAAAAATTTTTAAAACACGAAAATTTGTGAAACAC-GAAA-ATTTTGAAAACACGAAAAT
15110122 TTTTGAAACACG-GAAATTTTTAGA
64 TTTTGAAACACGAGAAATTTTTAGA
* * * * *
15110146 AAACACAAAAATTTTTTAAAATCACTG-GAATTTTTGGAAACACGAAGATTTTTGAAAAAATGAA
1 AAACACAAAAA-TTTTTAAAA-CAC-GAAAATTTGT-GAAACACGAA-AATTTTGAAAACACGAA
* * ** * *
15110210 GATTTTTTAAATGCAAG-AATTTTTCGA
61 AATTTTTGAAACACGAGAAATTTTTAGA
* * * * * * *
15110237 AAACACGAAAAAAATTTTAAAA-ATGGAATTTTTTGAAAACACGAGAATTTTTGAAAACATGAAA
1 AAACAC--AAAAATTTTTAAAACACGAAAATTTGTG-AAACACGA-AAATTTTGAAAACACGAAA
*
15110301 ATATTTGAAACATCG-GAAATTTTT
62 ATTTTTGAAACA-CGAGAAATTTTT
15110325 TTTAAAACGC
Statistics
Matches: 370, Mismatches: 55, Indels: 38
0.80 0.12 0.08
Matches are distributed among these distances:
87 7 0.02
88 69 0.19
89 148 0.40
90 62 0.17
91 61 0.16
92 18 0.05
93 5 0.01
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.31
Consensus pattern (88 bp):
AAACACAAAAATTTTTAAAACACGAAAATTTGTGAAACACGAAAATTTTGAAAACACGAAAATTT
TTGAAACACGAGAAATTTTTAGA
Found at i:15110308 original size:36 final size:36
Alignment explanation
Indices: 15109773--15110324 Score: 438
Period size: 36 Copynumber: 15.5 Consensus size: 36
15109763 CGATTTTTAA
* * *
15109773 AAAAAACGAAAGTTTTTG-AAACACGAGAATTTTTG
1 AAAACACGAAAATTTTTGAAAACACGAAAATTTTTG
* * **
15109808 AAAATACGAAAATTTTTG-AAACATGAAAA-TTTAA
1 AAAACACGAAAATTTTTGAAAACACGAAAATTTTTG
* * *
15109842 AAAACACGACAATTTTTG-AAACACGAGAATTTTTTTT
1 AAAACACGAAAATTTTTGAAAACACGA-AA-ATTTTTG
** * *
15109879 AAAACATAAAAATTTTT-AAAACATGAAAATTTGTG
1 AAAACACGAAAATTTTTGAAAACACGAAAATTTTTG
* *
15109914 -AAACACGAGAATTGTTGAAAACACGAAAATTTTTG
1 AAAACACGAAAATTTTTGAAAACACGAAAATTTTTG
*
15109949 -AAACACGAAAATTTTTAGAAAACACGAAAATTTTTT
1 AAAACACGAAAATTTTT-GAAAACACGAAAATTTTTG
*
15109985 AAAACACGAAAATTTTTGGAAACACGAAAATTTTT-
1 AAAACACGAAAATTTTTGAAAACACGAAAATTTTTG
* * * * *
15110020 AAAACACGACAATTTTTG-AAATAGGAGAATTTTTTC
1 AAAACACGAAAATTTTTGAAAACACGA-AAATTTTTG
* *
15110056 AAAACACAAAAATTTTT-AAAACACGAAAATTTGTG
1 AAAACACGAAAATTTTTGAAAACACGAAAATTTTTG
* *
15110091 -AAACACTGAAATTTTTTGAAAACATGAAAATTTTTG
1 AAAACAC-GAAAATTTTTGAAAACACGAAAATTTTTG
* * *
15110127 -AAACACGGAAATTTTTAGAAAACACAAAAATTTTTT
1 AAAACACGAAAATTTTT-GAAAACACGAAAATTTTTG
* * *
15110163 AAAATCACTG-GAATTTTTGGAAACACGAAGATTTTTG
1 AAAA-CAC-GAAAATTTTTGAAAACACGAAAATTTTTG
* * * * * *
15110200 AAAAAATGAAGATTTTTTAAATGCA--AGAATTTTTCG
1 AAAACACGAAAATTTTTGAAA-ACACGAAAATTTTT-G
* * * *
15110236 AAAACACGAAAAAAATTTT-AAAA-ATGGAATTTTTTG
1 AAAACACG--AAAATTTTTGAAAACACGAAAATTTTTG
* * *
15110272 AAAACACGAGAATTTTTGAAAACATGAAAATATTTG
1 AAAACACGAAAATTTTTGAAAACACGAAAATTTTTG
*
15110308 -AAACATCGGAAATTTTT
1 AAAACA-CGAAAATTTTT
15110325 TTTAAAACGC
Statistics
Matches: 413, Mismatches: 78, Indels: 51
0.76 0.14 0.09
Matches are distributed among these distances:
34 57 0.14
35 125 0.30
36 140 0.34
37 73 0.18
38 17 0.04
39 1 0.00
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.31
Consensus pattern (36 bp):
AAAACACGAAAATTTTTGAAAACACGAAAATTTTTG
Found at i:15110548 original size:18 final size:17
Alignment explanation
Indices: 15110488--15110545 Score: 64
Period size: 16 Copynumber: 3.4 Consensus size: 17
15110478 CGAGAAAAAT
15110488 TTTTTTGAAAACACGAA
1 TTTTTTGAAAACACGAA
** *
15110505 -AATTTCAAAACACGGGAA
1 TTTTTTGAAAACAC--GAA
15110523 TTTTTTGAAAACACGAA
1 TTTTTTGAAAACACGAA
15110540 TTTTTT
1 TTTTTT
15110546 TGAGTATTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
16 10 0.31
17 9 0.28
18 3 0.09
19 10 0.31
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (17 bp):
TTTTTTGAAAACACGAA
Found at i:15111115 original size:17 final size:17
Alignment explanation
Indices: 15111093--15111137 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
15111083 TGAAGATGCT
15111093 GGGTCGGGTCGTCAGTC
1 GGGTCGGGTCGTCAGTC
* *
15111110 GGGTCGAGTCGTCAGTT
1 GGGTCGGGTCGTCAGTC
*
15111127 GGGTCAGGTCG
1 GGGTCGGGTCG
15111138 GGTCGGGTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.09, C:0.20, G:0.47, T:0.24
Consensus pattern (17 bp):
GGGTCGGGTCGTCAGTC
Found at i:15111186 original size:4 final size:4
Alignment explanation
Indices: 15111179--15111246 Score: 70
Period size: 4 Copynumber: 17.0 Consensus size: 4
15111169 TTTTTTATTT
* *
15111179 TTTC TTTC TTTT TCTTC -TTC ATTC TTTC TTTC TTTC TTTC TTCTC TTTTC
1 TTTC TTTC TTTC T-TTC TTTC TTTC TTTC TTTC TTTC TTTC TT-TC -TTTC
15111229 TTTC TTT- TTT- TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC
15111247 CCAATCAACC
Statistics
Matches: 56, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
3 9 0.16
4 39 0.70
5 6 0.11
6 2 0.04
ACGTcount: A:0.01, C:0.24, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTC
Found at i:15111225 original size:28 final size:27
Alignment explanation
Indices: 15111171--15111244 Score: 86
Period size: 28 Copynumber: 2.9 Consensus size: 27
15111161 AAATTAATTT
*
15111171 TTTTATTT-TTTCTTTCTTT-TTCTTC
1 TTTTCTTTCTTTCTTTCTTTCTTCTTC
15111196 TTCATTCTTTCTTTCTTTCTTTCTTC-TC
1 TT--TTCTTTCTTTCTTTCTTTCTTCTTC
15111224 TTTTCTTTCTTT-TTT-TTTCTT
1 TTTTCTTTCTTTCTTTCTTTCTT
15111245 TCCCAATCAA
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
24 6 0.14
25 5 0.11
26 10 0.23
27 5 0.11
28 15 0.34
29 3 0.07
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (27 bp):
TTTTCTTTCTTTCTTTCTTTCTTCTTC
Found at i:15111230 original size:14 final size:13
Alignment explanation
Indices: 15111179--15111246 Score: 63
Period size: 14 Copynumber: 5.3 Consensus size: 13
15111169 TTTTTTATTT
15111179 TTTCTTTCTTTT-
1 TTTCTTTCTTTTC
*
15111191 TCTTC-TTC-ATTC
1 T-TTCTTTCTTTTC
15111203 TTTCTTTC-TTTC
1 TTTCTTTCTTTTC
15111215 TTTCTTCTCTTTTC
1 TTTCTT-TCTTTTC
*
15111229 TTTCTTTTTTTTTC
1 TTTC-TTTCTTTTC
15111243 TTTC
1 TTTC
15111247 CCAATCAACC
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
11 5 0.11
12 17 0.36
13 5 0.11
14 18 0.38
15 2 0.04
ACGTcount: A:0.01, C:0.24, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTCTTTCTTTTC
Found at i:15111245 original size:28 final size:31
Alignment explanation
Indices: 15111176--15111246 Score: 94
Period size: 30 Copynumber: 2.4 Consensus size: 31
15111166 AATTTTTTTA
*
15111176 TTTTTTCTTTCTTTTTCTTCTTCATTCTTTC
1 TTTTTTCTTTCTTTCTCTTCTTCATTCTTTC
*
15111207 TTTCTTTCTTTC-TTCTCTT-TTCTTTCTTT-
1 TTT-TTTCTTTCTTTCTCTTCTTCATTCTTTC
15111236 TTTTTTCTTTC
1 TTTTTTCTTTC
15111247 CCAATCAACC
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
28 8 0.22
29 3 0.08
30 9 0.24
31 9 0.24
32 8 0.22
ACGTcount: A:0.01, C:0.23, G:0.00, T:0.76
Consensus pattern (31 bp):
TTTTTTCTTTCTTTCTCTTCTTCATTCTTTC
Found at i:15111368 original size:14 final size:14
Alignment explanation
Indices: 15111349--15111379 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
15111339 TTCCTCCATT
15111349 TTTCTTCTTTTCTC
1 TTTCTTCTTTTCTC
*
15111363 TTTCTTTTTTTCTC
1 TTTCTTCTTTTCTC
15111377 TTT
1 TTT
15111380 TGCTTGTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTCTTCTTTTCTC
Found at i:15111375 original size:22 final size:23
Alignment explanation
Indices: 15111347--15111404 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 23
15111337 CTTTCCTCCA
*
15111347 TTTTTCTTCTTTT-CTCT-TTCTT
1 TTTTTCTTCTTTTGCT-TGTTATT
15111369 TTTTTC-TCTTTTGCTTGTTATT
1 TTTTTCTTCTTTTGCTTGTTATT
15111391 TTTTTCTCTCTTTT
1 TTTTTCT-TCTTTT
15111405 TTTTGCTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
21 7 0.23
22 18 0.58
24 6 0.19
ACGTcount: A:0.02, C:0.19, G:0.03, T:0.76
Consensus pattern (23 bp):
TTTTTCTTCTTTTGCTTGTTATT
Found at i:15111414 original size:22 final size:21
Alignment explanation
Indices: 15111347--15111415 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 21
15111337 CTTTCCTCCA
15111347 TTTTTCT-TCTTTTCTCTTTCTT
1 TTTTTCTCTCTTTT-T-TTTCTT
* *
15111369 TTTTTCTCT-TTTGCTTGTTATT
1 TTTTTCTCTCTTT--TTTTTCTT
15111391 TTTTTCTCTCTTTTTTTTGCTT
1 TTTTTCTCTCTTTTTTTT-CTT
15111413 TTT
1 TTT
15111416 GGTTGTTTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
21 4 0.11
22 28 0.74
23 5 0.13
24 1 0.03
ACGTcount: A:0.01, C:0.17, G:0.04, T:0.77
Consensus pattern (21 bp):
TTTTTCTCTCTTTTTTTTCTT
Found at i:15111759 original size:30 final size:30
Alignment explanation
Indices: 15111725--15111892 Score: 164
Period size: 30 Copynumber: 5.6 Consensus size: 30
15111715 CAAAACTTTT
**
15111725 GGGGTCAAAACATAATTTTGAGAAAGTTTA
1 GGGGTCAAAATGTAATTTTGAGAAAGTTTA
*
15111755 GGGGTC-AAATCGTAATTTTAAGAAAGTTTA
1 GGGGTCAAAAT-GTAATTTTGAGAAAGTTTA
* * * * *
15111785 GAGGTCAAAATATAA-TTTCATAATGTTTA
1 GGGGTCAAAATGTAATTTTGAGAAAGTTTA
* **
15111814 GGTGTTGAAATGTAATTTTGA-AAATGTTTA
1 GGGGTCAAAATGTAATTTTGAGAAA-GTTTA
*
15111844 GGGGTCAAAATGTAATTTT-AGAAAAGTGTA
1 GGGGTCAAAATGTAATTTTGAG-AAAGTTTA
*
15111874 GGGGTCAAAATGCAATTTT
1 GGGGTCAAAATGTAATTTT
15111893 TTTTAAACAC
Statistics
Matches: 112, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
29 27 0.24
30 78 0.70
31 7 0.06
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.35
Consensus pattern (30 bp):
GGGGTCAAAATGTAATTTTGAGAAAGTTTA
Found at i:15112154 original size:78 final size:77
Alignment explanation
Indices: 15112056--15112814 Score: 1011
Period size: 76 Copynumber: 9.9 Consensus size: 77
15112046 AGAATAGCTT
* *
15112056 GGCGTGCGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTT
1 GGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTT
15112121 AAAAGAATACCTC
66 AAAA-AATACCTC
* * * *
15112134 GGCATGCGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-ATAAATTT
1 GGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTT
15112198 AAAAGAAATACCTC
66 -AAA-AAATACCTC
* * *
15112212 GGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGCAATTT
1 GGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTT
15112277 -AAAAATACCTC
66 AAAAAATACCTC
* * * *
15112288 GGCGTATGACCCAAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACCGAAA-TT
1 GGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTT
*
15112352 GAAAAATACCTC
66 AAAAAATACCTC
* * *
15112364 AGCGTGTGACCTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAAACAGAAA-T
1 GGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATT
*
15112428 T-GAAAATACCTC
65 TAAAAAATACCTC
* * *
15112440 AGC--GTAACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-AGAAATTT
1 GGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTT
*
15112502 AAAAGAAATACATC
66 -AAA-AAATACCTC
* * * *
15112516 GGCATGTGACTCGAGGCTCAACTGACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGCAA-TT
1 GGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTT
* *
15112580 GAAAAATACATC
66 AAAAAATACCTC
* *
15112592 GGCGTGTCACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG-AATTT
1 GGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTT
*
15112656 GAAAAATACCTC
66 AAAAAATACCTC
* * *
15112668 AGCGTGTGACCTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-AGAAATTT
1 GGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTT
15112732 AAAAGAAATACCTC
66 -AAA-AAATACCTC
* * * * *
15112746 GGCATGCGACCTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTCAAAAACAGAAA-TT
1 GGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTT
15112810 AAAAA
66 AAAAA
15112815 TATAATTCTT
Statistics
Matches: 615, Mismatches: 49, Indels: 36
0.88 0.07 0.05
Matches are distributed among these distances:
72 5 0.01
73 13 0.02
74 38 0.06
75 7 0.01
76 271 0.44
77 34 0.06
78 231 0.38
79 16 0.03
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (77 bp):
GGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTT
AAAAAATACCTC
Found at i:15112621 original size:304 final size:305
Alignment explanation
Indices: 15112057--15112814 Score: 1198
Period size: 304 Copynumber: 2.5 Consensus size: 305
15112047 GAATAGCTTG
* * *
15112057 GCGTGCGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTTA
1 GCGTGTGACCTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-AGAAATTTA
* *
15112122 AAAGAATACCTCGGCATGCGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
65 AAA-AATACCTCGGCA-GCGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA
* *
15112187 AAAATAAATTTAAAAGAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
128 AAAAGAAATTTAAAAGAAATACATCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
15112252 GTTGATTTTTGAAAAATAGCAATTTAAAAATACCTCGGCGTATGACCCAAGCCTCAACTCACCTC
193 GTTGATTTTTGAAAAACAGCAATTGAAAAATACATCGGCGTATCACCCAAGCCTCAACTCACCTC
*
15112317 TCGCAATATGAGTTGATTTTTGAAAAACCGAAATTGAAAAATACCTCA
258 TCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAATACCTCA
15112365 GCGTGTGACCTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAAACAGAAA-TT
1 GCGTGTGACCTGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAA-AGAAATTT
* * **
15112429 -GAAAATACCTCAGC-GTAACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA
64 AAAAAATACCTCGGCAGCGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA
* *
15112492 AAAGAAATTTAAAAGAAATACATCGGCATGTGACTCGAGGCTCAACTGACCTCTCGCAATATGAG
129 AAAGAAATTTAAAAGAAATACATCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
* *
15112557 TTGATTTTTGAAAAACAGCAATTGAAAAATACATCGGCGTGTCACCCAAGGCTCAACTCACCTCT
194 TTGATTTTTGAAAAACAGCAATTGAAAAATACATCGGCGTATCACCCAAGCCTCAACTCACCTCT
*
15112622 CGCAATATGAGTTGATTTTTGAAAAACAGAATTTGAAAAATACCTCA
259 CGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAATACCTCA
15112669 GCGTGTGACCTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAGAAATTTAA
1 GCGTGTGACCTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAGAAATTT-A
* *
15112734 AAGAAATACCTCGGCATGCGACCTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTCAA
65 AA-AAATACCTCGGCA-GCGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA
*
15112799 AAACAGAAATTAAAAA
128 AAA-AGAAATTTAAAA
15112815 TATAATTCTT
Statistics
Matches: 413, Mismatches: 29, Indels: 15
0.90 0.06 0.03
Matches are distributed among these distances:
302 5 0.01
303 13 0.03
304 254 0.62
305 1 0.00
306 21 0.05
307 2 0.00
308 90 0.22
309 27 0.07
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (305 bp):
GCGTGTGACCTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAGAAATTTAA
AAAATACCTCGGCAGCGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA
AGAAATTTAAAAGAAATACATCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAACAGCAATTGAAAAATACATCGGCGTATCACCCAAGCCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAATACCTCA
Found at i:15121319 original size:35 final size:34
Alignment explanation
Indices: 15121224--15121743 Score: 337
Period size: 35 Copynumber: 14.6 Consensus size: 34
15121214 TTTAAAAAAA
* *
15121224 ACGAAATTTTTTGAAACACGAGAATTTTTGAAAC
1 ACGAAATTTTTTAAAACACGAAAATTTTTGAAAC
* * *
15121258 ACGAAAATTTTAAAAACACGACAATTTTTGAAAC
1 ACGAAATTTTTTAAAACACGAAAATTTTTGAAAC
* ** *
15121292 ACGAGAATTTTTTTAAACATAAAAATTTTTTAAAC
1 ACGA-AATTTTTTAAAACACGAAAATTTTTGAAAC
* * * * *
15121327 ACGAAAATTTGTGAAACACGAGAATTGTTGAAAAC
1 ACGAAATTTTTTAAAACACGAAAATTTTTG-AAAC
* *
15121362 ACGAAAATTTTGAAAACACGAAAATTTTTGAAAAC
1 ACGAAATTTTTTAAAACACGAAAATTTTTG-AAAC
* * *
15121397 ATGGAAA-TTTTTAGAAACACGGAAATTTTTAAAAC
1 A-CGAAATTTTTTA-AAACACGAAAATTTTTGAAAC
* *
15121432 ACGACAA-TTTTTGAAACACGAGAATTTTTTTCGAAAC
1 ACGA-AATTTTTTAAAACACGA-AA-ATTTTT-GAAAC
* * *
15121469 ACAAAAATTTTTAAAACACGAAAATTTGTGAAAC
1 ACGAAATTTTTTAAAACACGAAAATTTTTGAAAC
* **
15121503 ATGAGAATTTTTTGAAAACTTGAAAATTTTTGAAAC
1 ACGA-AATTTTTT-AAAACACGAAAATTTTTGAAAC
* *
15121539 ACGTAAATTTTTAGAAAACACGAAAATTTTTTAAAATC
1 ACG-AAATTTTT-TAAAACACGAAAA-TTTTTGAAA-C
* ** * *
15121577 ACCGGAATTTTTGGAAACACGAAGATTTTTGAAAAA
1 A-CGAAATTTTTTAAAACACGAAAATTTTTG-AAAC
* ** *
15121613 ATGAAGATTTTTTAAATGTA-G-GAATTTTTCGAAAAC
1 ACGAA-ATTTTTTAAA-ACACGAAAATTTTT-G-AAAC
** * * * *
15121649 ACGAAAAATTTTAAAAAATGGAATTTTTTGAAAAC
1 ACGAAATTTTTTAAAACACGAAAATTTTTG-AAAC
* * *
15121684 ACGGGAATTTTTGAAAACATGAAAATTTTTGAAAC
1 AC-GAAATTTTTTAAAACACGAAAATTTTTGAAAC
**
15121719 ATCGGATTTTTTTTTAAAACACGAA
1 A-C-GA-AATTTTTTAAAACACGAA
15121744 TTTTTCAATT
Statistics
Matches: 380, Mismatches: 81, Indels: 47
0.75 0.16 0.09
Matches are distributed among these distances:
34 69 0.18
35 122 0.32
36 120 0.32
37 58 0.15
38 9 0.02
39 2 0.01
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.32
Consensus pattern (34 bp):
ACGAAATTTTTTAAAACACGAAAATTTTTGAAAC
Found at i:15121467 original size:20 final size:19
Alignment explanation
Indices: 15121439--15121480 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
15121429 AACACGACAA
* *
15121439 TTTTTGAAACACGAGAATT
1 TTTTTGAAACACAAAAATT
15121458 TTTTTCGAAACACAAAAATT
1 TTTTT-GAAACACAAAAATT
15121478 TTT
1 TTT
15121481 AAAACACGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (19 bp):
TTTTTGAAACACAAAAATT
Found at i:15121691 original size:54 final size:52
Alignment explanation
Indices: 15121206--15121748 Score: 333
Period size: 53 Copynumber: 10.2 Consensus size: 52
15121196 AATTTTTAAG
* * * * *
15121206 CACG-AATTTTTAAAAAAAACGAAATTTTTTGAAACACGAGAA-TTTTTG-AAA
1 CACGAAATTTTT-GAAAACACGAAAATTTTTAAAACATG-GAATTTTTTGAAAA
* * * * * *
15121257 CACGAAAATTTTAAAAACACGACAATTTTTGAAACACGAGAATTTTTT-TAAA
1 CACGAAATTTTTGAAAACACGAAAATTTTTAAAACATG-GAATTTTTTGAAAA
** * * * * *
15121309 CATAAAAATTTTT-TAAACACGAAAATTTGTGAAACACGAGAA-TTGTTGAAAA
1 CA-CGAAATTTTTGAAAACACGAAAATTTTTAAAACATG-GAATTTTTTGAAAA
* *
15121361 CACGAAAATTTTGAAAACACGAAAATTTTTGAAAACATGGAAATTTTT-AGAAA
1 CACGAAATTTTTGAAAACACGAAAATTTTT-AAAACATGGAATTTTTTGA-AAA
* * *
15121414 CACGGAAATTTTT-AAAACACGACAATTTTTGAAACACGAGAATTTTTTTCG-AAA
1 CAC-GAAATTTTTGAAAACACGAAAATTTTTAAAACATG-GAA-TTTTTT-GAAAA
* * *
15121468 CACAAAAATTTTT-AAAACACGAAAATTTGTGAAACATGAGAATTTTTTGAAAA
1 CAC-GAAATTTTTGAAAACACGAAAATTTTTAAAACATG-GAATTTTTTGAAAA
** * * *
15121521 CTTGAAAATTTTTG-AAACACGTAAATTTTTAGAAAACACGAAAATTTTTT-AAAA
1 CACG-AAATTTTTGAAAACACGAAAATTTTT--AAAACATG-GAATTTTTTGAAAA
* * * * * *
15121575 TCACCGGAATTTTTGGAAACACGAAGATTTTTGAAAAAATGAAGATTTTTT-AAATG
1 -CA-CGAAATTTTTGAAAACACGAAAATTTTT-AAAACATGGA-ATTTTTTGAAA-A
* * * *
15121631 TA-GGAATTTTTCGAAAACACGAAAAATTTTAAAAAATGGAATTTTTTGAAAA
1 CACGAAATTTTT-GAAAACACGAAAATTTTTAAAACATGGAATTTTTTGAAAA
* * * * *
15121683 CACGGGAATTTTTGAAAACATGAAAATTTTTGAAACATCGGATTTTTTTTTAAAA
1 CAC-GAAATTTTTGAAAACACGAAAATTTTTAAAACAT-GGA-ATTTTTTGAAAA
15121738 CACG-AATTTTT
1 CACGAAATTTTT
15121749 CAATTTTTAT
Statistics
Matches: 403, Mismatches: 59, Indels: 58
0.77 0.11 0.11
Matches are distributed among these distances:
51 42 0.10
52 81 0.20
53 123 0.31
54 87 0.22
55 55 0.14
56 15 0.04
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.32
Consensus pattern (52 bp):
CACGAAATTTTTGAAAACACGAAAATTTTTAAAACATGGAATTTTTTGAAAA
Found at i:15121720 original size:17 final size:17
Alignment explanation
Indices: 15121224--15121719 Score: 354
Period size: 17 Copynumber: 28.1 Consensus size: 17
15121214 TTTAAAAAAA
*
15121224 ACGAAATTTTTTGAAAC
1 ACGAAAATTTTTGAAAC
*
15121241 ACGAGAATTTTTGAAAC
1 ACGAAAATTTTTGAAAC
**
15121258 ACGAAAATTTTAAAAAC
1 ACGAAAATTTTTGAAAC
*
15121275 ACGACAATTTTTGAAAC
1 ACGAAAATTTTTGAAAC
* *
15121292 ACGAGAATTTTTTTAAAC
1 ACGA-AAATTTTTGAAAC
** *
15121310 ATAAAAATTTTTTAAAC
1 ACGAAAATTTTTGAAAC
*
15121327 ACGAAAATTTGTGAAAC
1 ACGAAAATTTTTGAAAC
* *
15121344 ACGAGAATTGTTGAAAAC
1 ACGAAAATTTTTG-AAAC
15121362 ACGAAAA-TTTTGAAAAC
1 ACGAAAATTTTTG-AAAC
15121379 ACGAAAATTTTTGAAAAC
1 ACGAAAATTTTTG-AAAC
* *
15121397 ATGGAAATTTTTAGAAAC
1 ACGAAAATTTTT-GAAAC
* *
15121415 ACGGAAATTTTTAAAAC
1 ACGAAAATTTTTGAAAC
*
15121432 ACGACAATTTTTGAAAC
1 ACGAAAATTTTTGAAAC
*
15121449 ACGAGAATTTTTTTCGAAAC
1 ACGA-AA-ATTTTT-GAAAC
* *
15121469 ACAAAAATTTTTAAAAC
1 ACGAAAATTTTTGAAAC
*
15121486 ACGAAAATTTGTGAAAC
1 ACGAAAATTTTTGAAAC
* *
15121503 ATGAGAATTTTTTGAAA-
1 ACGA-AAATTTTTGAAAC
15121520 ACTTGAAAATTTTTGAAAC
1 AC--GAAAATTTTTGAAAC
*
15121539 ACGTAAATTTTTAGAAAAC
1 ACGAAAATTTTT-G-AAAC
*
15121558 ACGAAAATTTTTTAAAATC
1 ACGAAAA-TTTTTGAAA-C
*
15121577 ACCG-GAATTTTTGGAAAC
1 A-CGAAAATTTTT-GAAAC
* *
15121595 ACGAAGATTTTTGAAAAA
1 ACGAAAATTTTTG-AAAC
* * *
15121613 ATGAAGATTTTT-TAA-
1 ACGAAAATTTTTGAAAC
* *
15121628 ATGTAGGAATTTTTCGAAAAC
1 ACG-A-AAATTTTT-G-AAAC
* * *
15121649 ACGAAAAATTTTAAAAA
1 ACGAAAATTTTTGAAAC
* * *
15121666 ATGGAATTTTTTGAAAAC
1 ACGAAAATTTTTG-AAAC
**
15121684 ACGGGAATTTTTGAAAAC
1 ACGAAAATTTTTG-AAAC
*
15121702 ATGAAAATTTTTGAAAC
1 ACGAAAATTTTTGAAAC
15121719 A
1 A
15121720 TCGGATTTTT
Statistics
Matches: 380, Mismatches: 73, Indels: 52
0.75 0.14 0.10
Matches are distributed among these distances:
15 3 0.01
16 3 0.01
17 176 0.46
18 143 0.38
19 35 0.09
20 18 0.05
21 2 0.01
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.31
Consensus pattern (17 bp):
ACGAAAATTTTTGAAAC
Found at i:15121746 original size:19 final size:20
Alignment explanation
Indices: 15121709--15121748 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
15121699 AACATGAAAA
* *
15121709 TTTTTGAAACATCGGATTTT
1 TTTTTAAAACATCGAATTTT
15121729 TTTTTAAAACA-CGAATTTT
1 TTTTTAAAACATCGAATTTT
15121748 T
1 T
15121749 CAATTTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (20 bp):
TTTTTAAAACATCGAATTTT
Found at i:15121893 original size:20 final size:19
Alignment explanation
Indices: 15121852--15121896 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
15121842 GTTGCCTTAT
* * *
15121852 TTTTTTGAAAATGCGAATA
1 TTTTTTGAAAACGAGAAAA
15121871 TTTTTTGAAATACGAGAAAA
1 TTTTTTGAAA-ACGAGAAAA
15121891 TTTTTT
1 TTTTTT
15121897 TTTTGAAGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (19 bp):
TTTTTTGAAAACGAGAAAA
Found at i:15121949 original size:17 final size:17
Alignment explanation
Indices: 15121895--15121952 Score: 55
Period size: 19 Copynumber: 3.4 Consensus size: 17
15121885 AGAAAATTTT
*
15121895 TTTTTTGAAGACACGAA
1 TTTTTTGAAAACACGAA
** *
15121912 -AATTTCAAAACACGGGAA
1 TTTTTTGAAAACAC--GAA
15121930 TTTTTTGAAAACACGAA
1 TTTTTTGAAAACACGAA
15121947 TTTTTT
1 TTTTTT
15121953 TGAGTATTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
16 9 0.29
17 9 0.29
18 3 0.10
19 10 0.32
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (17 bp):
TTTTTTGAAAACACGAA
Found at i:15122126 original size:13 final size:13
Alignment explanation
Indices: 15122104--15122133 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
15122094 TTAATTGAGT
*
15122104 TAAATTAAAAATA
1 TAAATCAAAAATA
15122117 TAAATCAAAAATA
1 TAAATCAAAAATA
15122130 TAAA
1 TAAA
15122134 AATGCATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (13 bp):
TAAATCAAAAATA
Found at i:15122590 original size:10 final size:10
Alignment explanation
Indices: 15122575--15122649 Score: 66
Period size: 10 Copynumber: 7.3 Consensus size: 10
15122565 TAAATTAATT
15122575 TTTTTCTTTC
1 TTTTTCTTTC
15122585 TTTTTC-TTC
1 TTTTTCTTTC
15122594 TTTCTTC-TTC
1 TTT-TTCTTTC
*
15122604 TTTCTTCTTCC
1 TTT-TTCTTTC
15122615 TTCTTTC-TTC
1 TT-TTTCTTTC
15122625 TCTTTTCTTTC
1 T-TTTTCTTTC
*
15122636 TCTTTTTTTTC
1 T-TTTTCTTTC
15122647 TTT
1 TTT
15122650 CCCAATCAGC
Statistics
Matches: 57, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
9 6 0.11
10 28 0.49
11 22 0.39
12 1 0.02
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:15122599 original size:7 final size:7
Alignment explanation
Indices: 15122578--15122648 Score: 62
Period size: 7 Copynumber: 10.3 Consensus size: 7
15122568 ATTAATTTTT
15122578 TTCTTTC
1 TTCTTTC
15122585 TT-TTTC
1 TTCTTTC
15122591 TTCTTTCTTC
1 TTC--T-TTC
15122601 TTCTTTC
1 TTCTTTC
*
15122608 TTCTTCC
1 TTCTTTC
15122615 TTCTTTC
1 TTCTTTC
15122622 TTCTCTT-
1 TTCT-TTC
15122629 TTCTTTC
1 TTCTTTC
15122636 -TCTTT-
1 TTCTTTC
15122641 TT-TTTC
1 TTCTTTC
15122647 TT
1 TT
15122649 TCCCAATCAG
Statistics
Matches: 54, Mismatches: 2, Indels: 17
0.74 0.03 0.23
Matches are distributed among these distances:
5 3 0.06
6 16 0.30
7 25 0.46
8 3 0.06
9 1 0.02
10 6 0.11
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (7 bp):
TTCTTTC
Found at i:15122766 original size:18 final size:16
Alignment explanation
Indices: 15122739--15122808 Score: 52
Period size: 18 Copynumber: 4.1 Consensus size: 16
15122729 GGTTGTCTCC
15122739 TCTTTCCTCTATTTTTCT
1 TCTTTCCTCT-TTTTT-T
*
15122757 TCTTTTCTCTTTTTTT
1 TCTTTCCTCTTTTTTT
* *
15122773 TCTCTT-TTGCTTGTTGTT
1 TCT-TTCCT-CTT-TTTTT
15122791 TCTTTCTCTCTTTTTTT
1 TCTTTC-CTCTTTTTTT
15122808 T
1 T
15122809 TTGCTTTTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
16 5 0.12
17 17 0.40
18 19 0.45
19 1 0.02
ACGTcount: A:0.01, C:0.21, G:0.04, T:0.73
Consensus pattern (16 bp):
TCTTTCCTCTTTTTTT
Found at i:15122823 original size:34 final size:33
Alignment explanation
Indices: 15122756--15122825 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 33
15122746 TCTATTTTTC
*
15122756 TTCTTTTCTCTTTTTTTTCTCTTTTGCTTGTTGT
1 TTCTTTTCTCTTTTTTTTCTCTTTT-CTGGTTGT
*
15122790 TTCTTTCTCTCTTTTTTTTTTGCTTTT-TGGTTGT
1 TTCTTT-TCTCTTTTTTTTCT-CTTTTCTGGTTGT
15122824 TT
1 TT
15122826 TGCTAATTGC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
34 14 0.44
35 13 0.41
36 5 0.16
ACGTcount: A:0.00, C:0.16, G:0.10, T:0.74
Consensus pattern (33 bp):
TTCTTTTCTCTTTTTTTTCTCTTTTCTGGTTGT
Found at i:15123206 original size:30 final size:30
Alignment explanation
Indices: 15123127--15123297 Score: 168
Period size: 30 Copynumber: 5.8 Consensus size: 30
15123117 CAGCAAAACT
* * *
15123127 TTTA-GGGTCAAAACGTAATGTTTAGAAAG
1 TTTAGGGGTCAAAATGTAATTTTTAAAAAG
* * **
15123156 TTCAGGGGTCGAAACATAATTTTTAAAAAG
1 TTTAGGGGTCAAAATGTAATTTTTAAAAAG
* * *
15123186 TTTAGGGGTTAAAATGTAATTTTGAGAAAG
1 TTTAGGGGTCAAAATGTAATTTTTAAAAAG
* * *
15123216 TTTGGGGGTCAAAATGTAA-TTTCAAAATG
1 TTTAGGGGTCAAAATGTAATTTTTAAAAAG
** * *
15123245 TTTAGGGGTTGAAATGTAA-TTTGAAAATG
1 TTTAGGGGTCAAAATGTAATTTTTAAAAAG
15123274 TTTAGGGGTCAAAATGTAATTTTT
1 TTTAGGGGTCAAAATGTAATTTTT
15123298 TTAAAACACA
Statistics
Matches: 116, Mismatches: 24, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
29 52 0.45
30 64 0.55
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.36
Consensus pattern (30 bp):
TTTAGGGGTCAAAATGTAATTTTTAAAAAG
Found at i:15123259 original size:29 final size:29
Alignment explanation
Indices: 15123127--15123295 Score: 155
Period size: 29 Copynumber: 5.8 Consensus size: 29
15123117 CAGCAAAACT
* *
15123127 TTTA-GGGTCAAAACGTAATGTTTAGAAA-G
1 TTTAGGGGTCAAAATGTAAT-TTGA-AAATG
* * ** * *
15123156 TTCAGGGGTCGAAACATAATTTTTAAAAAG
1 TTTAGGGGTCAAAATGTAA-TTTGAAAATG
*
15123186 TTTAGGGGTTAAAATGTAATTTTGAGAAA-G
1 TTTAGGGGTCAAAATGTAA-TTTGA-AAATG
* *
15123216 TTTGGGGGTCAAAATGTAATTTCAAAATG
1 TTTAGGGGTCAAAATGTAATTTGAAAATG
**
15123245 TTTAGGGGTTGAAATGTAATTTGAAAATG
1 TTTAGGGGTCAAAATGTAATTTGAAAATG
15123274 TTTAGGGGTCAAAATGTAATTT
1 TTTAGGGGTCAAAATGTAATTT
15123296 TTTTAAAACA
Statistics
Matches: 117, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
28 3 0.03
29 56 0.48
30 54 0.46
31 4 0.03
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.35
Consensus pattern (29 bp):
TTTAGGGGTCAAAATGTAATTTGAAAATG
Found at i:15123294 original size:58 final size:59
Alignment explanation
Indices: 15123127--15123295 Score: 193
Period size: 59 Copynumber: 2.9 Consensus size: 59
15123117 CAGCAAAACT
* * * * ** *
15123127 TTTA-GGGTCAAAACGTAATGTTT-AGAAAGTTCAGGGGTCGAAACATAATTTTTAAAAAG
1 TTTAGGGGTTAAAATGTAAT-TTTGAGAAAGTTTAGGGGTCAAAATGTAA-TTTCAAAAAG
* *
15123186 TTTAGGGGTTAAAATGTAATTTTGAGAAAGTTTGGGGGTCAAAATGTAATTTCAAAATG
1 TTTAGGGGTTAAAATGTAATTTTGAGAAAGTTTAGGGGTCAAAATGTAATTTCAAAAAG
*
15123245 TTTAGGGGTTGAAATGTAA-TTTGA-AAATGTTTAGGGGTCAAAATGTAATTT
1 TTTAGGGGTTAAAATGTAATTTTGAGAAA-GTTTAGGGGTCAAAATGTAATTT
15123296 TTTTAAAACA
Statistics
Matches: 96, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
57 3 0.03
58 27 0.28
59 33 0.34
60 33 0.34
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.35
Consensus pattern (59 bp):
TTTAGGGGTTAAAATGTAATTTTGAGAAAGTTTAGGGGTCAAAATGTAATTTCAAAAAG
Found at i:15124830 original size:16 final size:17
Alignment explanation
Indices: 15124809--15124846 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
15124799 TTCTATATGG
*
15124809 ATTTTACT-TTTATTTT
1 ATTTTACTATGTATTTT
15124825 ATTTTACTACTGTATTTT
1 ATTTTACTA-TGTATTTT
15124843 ATTT
1 ATTT
15124847 AAATAATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
18 11 0.58
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTTACTATGTATTTT
Found at i:15133208 original size:23 final size:23
Alignment explanation
Indices: 15133163--15133209 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
15133153 GATCCAAAAG
* **
15133163 ATGAAAGTATAATTTCTCTCTGA
1 ATGAAAATATAATTTCTAACTGA
*
15133186 ATGAAAATATATTTTCTAACTGA
1 ATGAAAATATAATTTCTAACTGA
15133209 A
1 A
15133210 AAGCGGTTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (23 bp):
ATGAAAATATAATTTCTAACTGA
Found at i:15137392 original size:46 final size:45
Alignment explanation
Indices: 15137339--15137475 Score: 220
Period size: 46 Copynumber: 3.0 Consensus size: 45
15137329 ACAATGCTAT
* * *
15137339 AACTCAGTATGGTTTCCTTCACTGAAATATCATATCTACTTTTCAC
1 AACTCAGTATGGTTT-CTTCACTGAAACACCATACCTACTTTTCAC
15137385 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGG-TTTCTTCACTGAAACACCATACCTACTTTTCAC
15137431 AACTCAGTATGGCTTTCTTCACTGAAACACCATACCTACTTTTCA
1 AACTCAGTATGG-TTTCTTCACTGAAACACCATACCTACTTTTCA
15137476 TAATTTTCCA
Statistics
Matches: 86, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
46 83 0.97
47 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.09, T:0.36
Consensus pattern (45 bp):
AACTCAGTATGGTTTCTTCACTGAAACACCATACCTACTTTTCAC
Found at i:15138750 original size:16 final size:17
Alignment explanation
Indices: 15138704--15138750 Score: 78
Period size: 17 Copynumber: 2.8 Consensus size: 17
15138694 AAATTATTTT
15138704 TAAATCACAAAATTCAC
1 TAAATCACAAAATTCAC
15138721 TAAATCACAAAATTCAC
1 TAAATCACAAAATTCAC
*
15138738 TAATTCA-AAAATT
1 TAAATCACAAAATT
15138751 ATTCTAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
16 6 0.21
17 23 0.79
ACGTcount: A:0.53, C:0.19, G:0.00, T:0.28
Consensus pattern (17 bp):
TAAATCACAAAATTCAC
Found at i:15150111 original size:31 final size:32
Alignment explanation
Indices: 15150075--15150139 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
15150065 CTTAGATAAT
15150075 TTTAAAAAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAAAGTTTTTATTAGGATTCAATTACTC
*
15150106 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAAAGTTTTTATTAGGATTCAATTACTC
15150138 TT
1 TT
15150140 GTAATTTGCC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 8 0.25
32 24 0.75
ACGTcount: A:0.32, C:0.09, G:0.11, T:0.48
Consensus pattern (32 bp):
TTTAAAAAGTTTTTATTAGGATTCAATTACTC
Found at i:15150452 original size:4 final size:4
Alignment explanation
Indices: 15150443--15150477 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
15150433 ATCGATCCTT
15150443 TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
15150478 ACTAATTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.10
4 27 0.90
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:15150771 original size:32 final size:31
Alignment explanation
Indices: 15150703--15150795 Score: 116
Period size: 32 Copynumber: 2.9 Consensus size: 31
15150693 ATAAAAGCAA
* * * *
15150703 AAAAAAAAGAAAAAAAACAGCAAAAACAACAA-
1 AAAAAAAAG-CAAAAAGC-GCAAAAAAAAAAAG
15150735 AAAAAAAAGCAAAAAGCGCAAAAGAAAAAAAG
1 AAAAAAAAGCAAAAAGCGCAAAA-AAAAAAAG
15150767 AAAAAAAAGCAAAAAGCGCAAAAAAAAAA
1 AAAAAAAAGCAAAAAGCGCAAAAAAAAAA
15150796 GTTGCCTACC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
30 6 0.11
31 17 0.31
32 32 0.58
ACGTcount: A:0.78, C:0.11, G:0.11, T:0.00
Consensus pattern (31 bp):
AAAAAAAAGCAAAAAGCGCAAAAAAAAAAAG
Found at i:15150778 original size:23 final size:23
Alignment explanation
Indices: 15150736--15150780 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
15150726 AAACAACAAA
* **
15150736 AAAAAAAGCAAAAAGCGCAAAAG
1 AAAAAAAGAAAAAAAAGCAAAAG
15150759 AAAAAAAGAAAAAAAAGCAAAA
1 AAAAAAAGAAAAAAAAGCAAAA
15150781 AGCGCAAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.78, C:0.09, G:0.13, T:0.00
Consensus pattern (23 bp):
AAAAAAAGAAAAAAAAGCAAAAG
Found at i:15153970 original size:31 final size:32
Alignment explanation
Indices: 15153934--15153998 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
15153924 CTTAGATAAT
15153934 TTTAAAAAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAAAGTTTTTATTAGGATTCAATTACTC
*
15153965 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAAAGTTTTTATTAGGATTCAATTACTC
15153997 TT
1 TT
15153999 GTAATTTGCC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 8 0.25
32 24 0.75
ACGTcount: A:0.32, C:0.09, G:0.11, T:0.48
Consensus pattern (32 bp):
TTTAAAAAGTTTTTATTAGGATTCAATTACTC
Found at i:15154690 original size:20 final size:20
Alignment explanation
Indices: 15154638--15154677 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
15154628 GAGTCATTAC
*
15154638 AATTATTTAAAAATTATAAA
1 AATTATTAAAAAATTATAAA
15154658 AATTATTAAAAAATT-TAAA
1 AATTATTAAAAAATTATAAA
15154677 A
1 A
15154678 TTTTTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
AATTATTAAAAAATTATAAA
Found at i:15155348 original size:24 final size:22
Alignment explanation
Indices: 15155312--15155368 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 22
15155302 TCGTTAAGTA
*
15155312 AAAAAT-ACACTTTTATTTGAT-
1 AAAAATAATACTTTTATTT-ATC
15155333 AAACAAGTAATAC-TTTATTTATC
1 AAA-AA-TAATACTTTTATTTATC
15155356 AAAAATAATACTT
1 AAAAATAATACTT
15155369 GAGTGTAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
21 9 0.30
22 7 0.23
23 11 0.37
24 3 0.10
ACGTcount: A:0.47, C:0.11, G:0.04, T:0.39
Consensus pattern (22 bp):
AAAAATAATACTTTTATTTATC
Found at i:15155366 original size:21 final size:23
Alignment explanation
Indices: 15155323--15155368 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
15155313 AAAATACACT
15155323 TTTATTTGATAAACAAGTAATAC
1 TTTATTTGATAAACAAGTAATAC
15155346 TTTATTT-ATCAAA-AA-TAATAC
1 TTTATTTGAT-AAACAAGTAATAC
15155367 TT
1 TT
15155369 GAGTGTAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 8 0.36
22 4 0.18
23 10 0.45
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.43
Consensus pattern (23 bp):
TTTATTTGATAAACAAGTAATAC
Found at i:15155542 original size:2 final size:2
Alignment explanation
Indices: 15155537--15155561 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15155527 AAAAAAAAAA
15155537 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
15155562 AAAGCACATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15157368 original size:18 final size:18
Alignment explanation
Indices: 15157345--15157384 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
15157335 TATAATTTTA
*
15157345 AAAAATA-TATAATACATC
1 AAAAATACTA-AAAACATC
15157363 AAAAATACTAAAAACATC
1 AAAAATACTAAAAACATC
15157381 AAAA
1 AAAA
15157385 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATACTAAAAACATC
Found at i:15158507 original size:12 final size:12
Alignment explanation
Indices: 15158490--15158519 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
15158480 ACAAAATCCG
15158490 AATTTAATTTCC
1 AATTTAATTTCC
*
15158502 AATTTAATTTCT
1 AATTTAATTTCC
15158514 AATTTA
1 AATTTA
15158520 TTTAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (12 bp):
AATTTAATTTCC
Found at i:15164819 original size:4 final size:4
Alignment explanation
Indices: 15164810--15164851 Score: 59
Period size: 4 Copynumber: 10.5 Consensus size: 4
15164800 TTGCTTGTAT
*
15164810 ATAA ATAA ATAA ATAA ATAAA ATGA A-AA ATAA ATAA ATAA AT
1 ATAA ATAA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA ATAA AT
15164852 GCTCAAGTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 2 0.06
4 28 0.82
5 4 0.12
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:15178376 original size:13 final size:13
Alignment explanation
Indices: 15178358--15178384 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15178348 GCAGTTTAAC
15178358 ATTGTTTTTGAAA
1 ATTGTTTTTGAAA
15178371 ATTGTTTTTGAAA
1 ATTGTTTTTGAAA
15178384 A
1 A
15178385 GTTTAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (13 bp):
ATTGTTTTTGAAA
Found at i:15179144 original size:10 final size:10
Alignment explanation
Indices: 15179051--15179222 Score: 75
Period size: 10 Copynumber: 17.7 Consensus size: 10
15179041 TATTTAAACT
15179051 TAAAAT-TTA
1 TAAAATATTA
15179060 TTAAAATATTA
1 -TAAAATATTA
*
15179071 -AAAAAATTA
1 TAAAATATTA
15179080 TAGAAA-ATCTA
1 TA-AAATAT-TA
15179091 TAAAAATATT-
1 T-AAAATATTA
*
15179101 T-AAATATAA
1 TAAAATATTA
15179110 TAAAAT-TT-
1 TAAAATATTA
*
15179118 TAAAA-ACTA
1 TAAAATATTA
**
15179127 CCAAATATTA
1 TAAAATATTA
15179137 TAAAATATTA
1 TAAAATATTA
* *
15179147 TTAATATGTTA
1 -TAAAATATTA
15179158 TGAAAA-A-TA
1 T-AAAATATTA
*
15179167 TGAAATATTA
1 TAAAATATTA
*
15179177 AATAAATATTA
1 TA-AAATATTA
15179188 TAAAA-ATT-
1 TAAAATATTA
*
15179196 TAGAA-ATTA
1 TAAAATATTA
15179205 TAGAAA-ATATA
1 TA-AAATAT-TA
15179216 TAAAATA
1 TAAAATA
15179223 ATTAAAATGA
Statistics
Matches: 123, Mismatches: 19, Indels: 39
0.68 0.10 0.22
Matches are distributed among these distances:
8 22 0.18
9 22 0.18
10 38 0.31
11 38 0.31
12 3 0.02
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.35
Consensus pattern (10 bp):
TAAAATATTA
Found at i:15179221 original size:19 final size:17
Alignment explanation
Indices: 15179178--15179245 Score: 50
Period size: 18 Copynumber: 3.9 Consensus size: 17
15179168 GAAATATTAA
15179178 ATAAATATTATAAAAATT
1 ATAAA-ATTATAAAAATT
15179196 -TAGAAATTATAGAAAATAT
1 ATA-AAATTATA-AAAAT-T
* * *
15179215 ATAAAATAATTAAAATG
1 ATAAAATTATAAAAATT
*
15179232 AT-AAAGTATAAAAA
1 ATAAAATTATAAAAA
15179246 AAGTTGTAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
16 9 0.22
17 10 0.25
18 12 0.30
19 7 0.17
20 2 0.05
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (17 bp):
ATAAAATTATAAAAATT
Found at i:15186714 original size:7 final size:7
Alignment explanation
Indices: 15186702--15186732 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
15186692 TAAATCCTGA
15186702 GCAAATT
1 GCAAATT
15186709 GCAAATT
1 GCAAATT
15186716 GCAAATT
1 GCAAATT
15186723 GCAAATT
1 GCAAATT
15186730 GCA
1 GCA
15186733 TGATATTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (7 bp):
GCAAATT
Found at i:15198124 original size:36 final size:37
Alignment explanation
Indices: 15198077--15198147 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
15198067 GAGATTATTA
*
15198077 GGAGAAAGTAG-AATCTGTGGAAATACCTGTGGATTT
1 GGAGAAAGTAGAAATCCGTGGAAATACCTGTGGATTT
15198113 GGAGAAAGTAGAAATCCGTGGAAATACCTGTGGAT
1 GGAGAAAGTAGAAATCCGTGGAAATACCTGTGGAT
15198148 ATTTTCGTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 11 0.33
37 22 0.67
ACGTcount: A:0.35, C:0.10, G:0.31, T:0.24
Consensus pattern (37 bp):
GGAGAAAGTAGAAATCCGTGGAAATACCTGTGGATTT
Found at i:15199270 original size:23 final size:21
Alignment explanation
Indices: 15199244--15199292 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
15199234 TAAACTAATT
15199244 ATTATAATATTAAAAAAAGAAAA
1 ATTAT-ATA-TAAAAAAAGAAAA
* *
15199267 ATTATTTATAAAAAAAGTAAA
1 ATTATATATAAAAAAAGAAAA
*
15199288 GTTAT
1 ATTAT
15199293 TTGTTTCCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 16 0.70
22 2 0.09
23 5 0.22
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (21 bp):
ATTATATATAAAAAAAGAAAA
Found at i:15199280 original size:21 final size:21
Alignment explanation
Indices: 15199254--15199294 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
15199244 ATTATAATAT
15199254 TAAAAAAAGAAAAATTATTTA
1 TAAAAAAAGAAAAATTATTTA
* *
15199275 TAAAAAAAGTAAAGTTATTT
1 TAAAAAAAGAAAAATTATTT
15199295 GTTTCCCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (21 bp):
TAAAAAAAGAAAAATTATTTA
Found at i:15203213 original size:23 final size:23
Alignment explanation
Indices: 15203187--15203255 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
15203177 AAGCGAGCAA
15203187 TATCGAGAAGCTCACAAAGAGCC
1 TATCGAGAAGCTCACAAAGAGCC
* *
15203210 TATCGGGAAGCTCACGAAGAGCC
1 TATCGAGAAGCTCACAAAGAGCC
* *
15203233 TATTGAGAAGCTCACAAAAAGCC
1 TATCGAGAAGCTCACAAAGAGCC
15203256 ATATAACATG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.38, C:0.25, G:0.23, T:0.14
Consensus pattern (23 bp):
TATCGAGAAGCTCACAAAGAGCC
Found at i:15203218 original size:46 final size:46
Alignment explanation
Indices: 15203164--15203255 Score: 114
Period size: 46 Copynumber: 2.0 Consensus size: 46
15203154 TATAGCCATA
* * *
15203164 TATCGGGAAGTTCAAG-CGAGCAATATCGAGAAGCTCACAAAGAGCC
1 TATCGGGAAGCTCAAGAAGAGC-ATATCGAGAAGCTCACAAAAAGCC
* * *
15203210 TATCGGGAAGCTCACGAAGAGCCTATTGAGAAGCTCACAAAAAGCC
1 TATCGGGAAGCTCAAGAAGAGCATATCGAGAAGCTCACAAAAAGCC
15203256 ATATAACATG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 35 0.90
47 4 0.10
ACGTcount: A:0.37, C:0.23, G:0.25, T:0.15
Consensus pattern (46 bp):
TATCGGGAAGCTCAAGAAGAGCATATCGAGAAGCTCACAAAAAGCC
Found at i:15205172 original size:23 final size:23
Alignment explanation
Indices: 15205120--15205164 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
15205110 AAATTATATA
* *
15205120 AATATTTTGAAATTTATTTGTTT
1 AATATTTTAAAATTTATTTGTGT
15205143 AATATTTTAAAATTTA-TTGTGT
1 AATATTTTAAAATTTATTTGTGT
15205165 CATAATTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (23 bp):
AATATTTTAAAATTTATTTGTGT
Found at i:15207287 original size:23 final size:22
Alignment explanation
Indices: 15207244--15207287 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
15207234 TTCTAAGTCG
15207244 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
15207267 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
15207288 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:15207396 original size:45 final size:45
Alignment explanation
Indices: 15207332--15207421 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
15207322 AACAGATACT
* *
15207332 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
15207377 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
15207422 TGGTTCATAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:15209773 original size:11 final size:11
Alignment explanation
Indices: 15209757--15209782 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15209747 ATATTACTTA
15209757 AAATAAAATAT
1 AAATAAAATAT
15209768 AAATAAAATAT
1 AAATAAAATAT
15209779 AAAT
1 AAAT
15209783 CTTTATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AAATAAAATAT
Found at i:15211587 original size:31 final size:31
Alignment explanation
Indices: 15211552--15211614 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
15211542 TAATATACAA
*
15211552 AACCGATTCACAACCCAAGTACTTGCCATAT
1 AACCGATTCACAACCCAAGTACTTACCATAT
15211583 AACCGATTCACAACCCAAGTACTTACCATAT
1 AACCGATTCACAACCCAAGTACTTACCATAT
15211614 A
1 A
15211615 TCGAAACGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.32, G:0.08, T:0.22
Consensus pattern (31 bp):
AACCGATTCACAACCCAAGTACTTACCATAT
Found at i:15212908 original size:18 final size:17
Alignment explanation
Indices: 15212863--15212910 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
15212853 ATATATAATT
15212863 TCACATTCAATTTCAAAA
1 TCACATTCAA-TTCAAAA
**
15212881 TCACATTTCAATTCATCA
1 TCACA-TTCAATTCAAAA
15212899 TCTACATTCAAT
1 TC-ACATTCAAT
15212911 ATCTCATATC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 18 0.69
19 8 0.31
ACGTcount: A:0.38, C:0.25, G:0.00, T:0.38
Consensus pattern (17 bp):
TCACATTCAATTCAAAA
Found at i:15213590 original size:30 final size:31
Alignment explanation
Indices: 15213556--15213613 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
15213546 GTTTTCATAG
15213556 TTTTAG-GTTAGGTTTT-TCTTTTCTTTTCTT
1 TTTTAGAG-TAGGTTTTCTCTTTTCTTTTCTT
15213586 TTTTAGAGTAGGTTTTCTCTTTTCTTTT
1 TTTTAGAGTAGGTTTTCTCTTTTCTTTT
15213614 TAGGATAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
30 14 0.54
31 12 0.46
ACGTcount: A:0.09, C:0.10, G:0.14, T:0.67
Consensus pattern (31 bp):
TTTTAGAGTAGGTTTTCTCTTTTCTTTTCTT
Found at i:15215679 original size:237 final size:228
Alignment explanation
Indices: 15215182--15215742 Score: 818
Period size: 237 Copynumber: 2.4 Consensus size: 228
15215172 ATACAATAAT
* * *
15215182 TAATATATAATGTATTACTATTATATATAACTATTATTATATTATACATTATAATAAAAGATACA
1 TAATATATAATGTACTACTATTATATATAACTATTATTATATTATAGATTATAATAAAAGATATA
* * *
15215247 ATATTACATGATATTATAATGTTTAATCATTGATGCATATATATAAACTATTAATATATTATATA
66 ATATTACATGATATTATAATGTTTAATCATTAATGCATATATATAAACCATTAATATATCATATA
* * *
15215312 CCATATGATATGATATAATATAGTAGGAGGGCTAACTTTCAAATGTACGAAAAGTATAGGGATTT
131 CCATATGATATGATATAATATAGTAGGAGGGCTAACTTTCAAATGTACGAAAAATATAGAGACTT
**
15215377 AAAGTATATTTCAAATAGTATAATAATAAACAA
196 AAAACATATTTCAAATAGTATAATAATAAACAA
* *
15215410 TAATATATAATATACTACCATTATATATAACTATTATTATATTATAGATTATAATAAAAGATATA
1 TAATATATAATGTACTACTATTATATATAACTATTATTATATTATAGATTATAATAAAAGATATA
* *
15215475 ACATTACATGATATTGTAATGTTTAATCATTAATGCATATATATAAATAAACCATTAATATATCA
66 ATATTACATGATATTATAATGTTTAATCATTAATGC--ATATAT--ATAAACCATTAATATATCA
15215540 TATACTC-TATGATATGATATTATATAGTATAGTAGGAGGGCTAACTTTCAAATGTACGAAAAAT
127 TATAC-CATATGATATG--A-TATA-A-TATAGTAGGAGGGCTAACTTTCAAATGTACGAAAAAT
* ** *
15215604 ATAGAGACTTAAAACATATTTGACGTAGTATAATTATAAACAA
186 ATAGAGACTTAAAACATATTTCAAATAGTATAATAATAAACAA
*
15215647 TAATATATAATGTACTACTATTATATATAACTATTATTATATTATAGATTATAATAAAATATATA
1 TAATATATAATGTACTACTATTATATATAACTATTATTATATTATAGATTATAATAAAAGATATA
* * *
15215712 GTATTACATGTTATTATAATGTTCAATCATT
66 ATATTACATGATATTATAATGTTTAATCATT
15215743 GTACATATAT
Statistics
Matches: 296, Mismatches: 27, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
228 93 0.31
230 6 0.02
232 31 0.10
233 1 0.00
234 1 0.00
235 4 0.01
236 1 0.00
237 159 0.54
ACGTcount: A:0.45, C:0.08, G:0.09, T:0.39
Consensus pattern (228 bp):
TAATATATAATGTACTACTATTATATATAACTATTATTATATTATAGATTATAATAAAAGATATA
ATATTACATGATATTATAATGTTTAATCATTAATGCATATATATAAACCATTAATATATCATATA
CCATATGATATGATATAATATAGTAGGAGGGCTAACTTTCAAATGTACGAAAAATATAGAGACTT
AAAACATATTTCAAATAGTATAATAATAAACAA
Found at i:15224786 original size:12 final size:12
Alignment explanation
Indices: 15224746--15224787 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
15224736 TAAACTTTAC
15224746 TAGGAATTCTAT
1 TAGGAATTCTAT
*
15224758 TAGGACTT-TAAAT
1 TAGGAATTCT--AT
15224771 TAGGAATTCTAT
1 TAGGAATTCTAT
15224783 TAGGA
1 TAGGA
15224788 CTTTCCCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 1 0.04
12 14 0.56
13 9 0.36
14 1 0.04
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.38
Consensus pattern (12 bp):
TAGGAATTCTAT
Found at i:15229752 original size:19 final size:20
Alignment explanation
Indices: 15229706--15229752 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
15229696 CGTAATGACT
*
15229706 TTGATGAAAATAGAATTGAG
1 TTGATGAAAATAGAATTGAA
15229726 TTGA-GAAAATA-AATT-AA
1 TTGATGAAAATAGAATTGAA
15229743 TTGGATGAAA
1 TT-GATGAAA
15229753 TTGTAACAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
17 3 0.12
18 6 0.25
19 11 0.46
20 4 0.17
ACGTcount: A:0.49, C:0.00, G:0.21, T:0.30
Consensus pattern (20 bp):
TTGATGAAAATAGAATTGAA
Found at i:15231930 original size:15 final size:15
Alignment explanation
Indices: 15231910--15231944 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
15231900 AATGTTATCA
*
15231910 TTATTTTTACTATTG
1 TTATTTTTAATATTG
15231925 TTATTTTTAATATTG
1 TTATTTTTAATATTG
15231940 TTATT
1 TTATT
15231945 ACTATTACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.23, C:0.03, G:0.06, T:0.69
Consensus pattern (15 bp):
TTATTTTTAATATTG
Found at i:15232182 original size:19 final size:20
Alignment explanation
Indices: 15232155--15232210 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 20
15232145 TATGTACATA
15232155 TACATACTTATATATTT-TT
1 TACATACTTATATATTTGTT
*
15232174 TATATACTT-TATAATTTGTT
1 TACATACTTATAT-ATTTGTT
15232194 TACATATCTATATATAT
1 TACATA-CT-TATATAT
15232211 CTATATACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
18 3 0.10
19 12 0.40
20 7 0.23
21 2 0.07
22 3 0.10
23 3 0.10
ACGTcount: A:0.34, C:0.09, G:0.02, T:0.55
Consensus pattern (20 bp):
TACATACTTATATATTTGTT
Found at i:15236621 original size:6 final size:6
Alignment explanation
Indices: 15236612--15236667 Score: 62
Period size: 6 Copynumber: 9.3 Consensus size: 6
15236602 CTATGAGTTT
* *
15236612 AGAAAA AGAAGA AG-AAA AG-AAA AGAAAA AGAAAA AGAACAA AAAGAAA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAA-AA AGA-AAA
15236660 AGAAAA AG
1 AGAAAA AG
15236668 GAGATGCCAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
5 9 0.21
6 25 0.58
7 8 0.19
8 1 0.02
ACGTcount: A:0.79, C:0.02, G:0.20, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:15236633 original size:5 final size:5
Alignment explanation
Indices: 15236615--15236665 Score: 59
Period size: 5 Copynumber: 9.8 Consensus size: 5
15236605 TGAGTTTAGA
*
15236615 AAAAG AAGAAG AAAAG AAAAG AAAAAG AAAAAG AACA- AAAAG AAAAG
1 AAAAG AA-AAG AAAAG AAAAG -AAAAG -AAAAG AAAAG AAAAG AAAAG
15236662 AAAA
1 AAAA
15236666 AGGAGATGCC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
4 3 0.07
5 22 0.54
6 16 0.39
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:15236640 original size:22 final size:21
Alignment explanation
Indices: 15236612--15236667 Score: 78
Period size: 22 Copynumber: 2.7 Consensus size: 21
15236602 CTATGAGTTT
*
15236612 AGAAAAAGAAGAAGAAAAGAAA
1 AGAAAAAGAAAAAGAAAA-AAA
*
15236634 AGAAAAAGAAAAAGAACAAAA
1 AGAAAAAGAAAAAGAAAAAAA
15236655 AG-AAAAGAAAAAG
1 AGAAAAAGAAAAAG
15236668 GAGATGCCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 11 0.34
21 5 0.16
22 16 0.50
ACGTcount: A:0.79, C:0.02, G:0.20, T:0.00
Consensus pattern (21 bp):
AGAAAAAGAAAAAGAAAAAAA
Found at i:15236667 original size:11 final size:11
Alignment explanation
Indices: 15236612--15236667 Score: 60
Period size: 11 Copynumber: 4.7 Consensus size: 11
15236602 CTATGAGTTT
15236612 AGAAAAAGAAGA
1 AGAAAAAGAA-A
15236624 AG-AAAAGAAA
1 AGAAAAAGAAA
15236634 AGAAAAAGAAAA
1 AGAAAAAG-AAA
15236646 AGAACAAAAAGAAA
1 AG---AAAAAGAAA
15236660 AGAAAAAG
1 AGAAAAAG
15236668 GAGATGCCAA
Statistics
Matches: 39, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
10 3 0.08
11 18 0.46
12 7 0.18
14 5 0.13
15 6 0.15
ACGTcount: A:0.79, C:0.02, G:0.20, T:0.00
Consensus pattern (11 bp):
AGAAAAAGAAA
Found at i:15238865 original size:41 final size:41
Alignment explanation
Indices: 15238548--15238862 Score: 486
Period size: 41 Copynumber: 7.7 Consensus size: 41
15238538 TTAATTTAAA
* * * *
15238548 CAGATTCACTGGCACTTAGCTTGTTAGGCTTAAAGCCTGATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* * *
15238590 TAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTAATC
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
15238631 CAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
15238672 CAAATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
15238713 CAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* *
15238754 CAGTTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* *
15238795 TAGATCACCGGCACTTAGCCTGCTAGGTTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
15238836 TAGATCACCGGCACTTAGCCTGCTAGG
1 CAGATCACCGGCACTTAGCCTGCTAGG
15238863 TTTTAAAACC
Statistics
Matches: 253, Mismatches: 20, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
41 250 0.99
42 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
Found at i:15241692 original size:134 final size:134
Alignment explanation
Indices: 15241451--15242017 Score: 486
Period size: 134 Copynumber: 4.2 Consensus size: 134
15241441 CAAACAACAG
*
15241451 ATCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAAATAACAGATCTTGCCTTCCTGTACTGA
1 ATCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAAATAACAGATCTTGCATTCCTGTACTGA
* * * *
15241516 CAGTGAAGCAAATCGAAGACACTAGCCTTGCCTTCCTATACTGATAGCGGAGCAGACTGAAGATA
66 CAGCGAAGCAAATCGAAGACACCAGCCTTGCCTTCCTATACTGACAGCAGAGCAGACTGAAGATA
15241581 GCAA
131 GCAA
* **
15241585 ATCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGTAGATCTTGCATTCCTGTACTGA
1 ATCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAAATAACAGATCTTGCATTCCTGTACTGA
* *
15241650 CAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCAGAGCAGACTGAAGATA
66 CAGCGAAGCAAATCGAAGACACCAGCCTTGCCTTCCTATACTGACAGCAGAGCAGACTGAAGATA
*
15241715 GCAG
131 GCAA
* * * * * * * * * *
15241719 ATCTTGCCTTTCTGTACTGACAGCGAAGCAGA-TCGAAGACACCA-ACCTTGCCTTTCTATATTG
1 ATCTTGCCTTCCTGTACTGACAGCGGAGCAGACT-GAAAATAACAGATCTTGCATTCCTGTACTG
* * * ** * * * * * * *
15241782 ACAGCGGAGTAAA-CTGAAGATAATAGATCTTGCGTTCCTGTACTAACAACAAAGTAGA-TCGAA
65 ACAGCGAAGCAAATC-GAAGACACCAG-CCTTGCCTTCCTATACTGACAGCAGAGCAGACT-GAA
* *
15241845 GACA-CCA
127 GATAGCAA
* * * * * * * * *
15241852 GTCTTTCCTCCCTGGGT-TTG-CAGCGGAGCAAACTGAAGATAACAGATATTGCCTTCCTATACT
1 ATCTTGCCTTCCT--GTACTGACAGCGGAGCAGACTGAAAATAACAGATCTTGCATTCCTGTACT
** * ** * * * *
15241915 GACAGCGAAATAGATCGAAGACACCAATCTTGCCTCCCTGGAT-TTG-TAGTAGAGCAGACTGAA
64 GACAGCGAAGCAAATCGAAGACACCAGCCTTGCCTTCCT--ATACTGACAGCAGAGCAGACTGAA
*
15241978 GATAGCAG
127 GATAGCAA
* * *
15241986 ATCTTGCCTTCCTGTACTAACAGTGAAGCAGA
1 ATCTTGCCTTCCTGTACTGACAGCGGAGCAGA
15242018 TCGAAGATAC
Statistics
Matches: 341, Mismatches: 77, Indels: 30
0.76 0.17 0.07
Matches are distributed among these distances:
132 3 0.01
133 86 0.25
134 248 0.73
135 4 0.01
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (134 bp):
ATCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAAATAACAGATCTTGCATTCCTGTACTGA
CAGCGAAGCAAATCGAAGACACCAGCCTTGCCTTCCTATACTGACAGCAGAGCAGACTGAAGATA
GCAA
Found at i:15241786 original size:178 final size:176
Alignment explanation
Indices: 15241449--15242029 Score: 584
Period size: 178 Copynumber: 3.3 Consensus size: 176
15241439 CTCAAACAAC
* * * * *
15241449 AGATCTTGCCTTCCTGTACTGACAGCGGAGCAGA-CTGAAAATAACAGATCTTGCCTTCCTGTAC
1 AGATCTTGCCTTCCTGTACTAACAGCGAAGCAGATC-GAAGACACCAG-TCTTGCCTTCCTGTAC
* * * * * *
15241513 TGACAG-TGAAGCAAATCGAAGACACTAG-CCTTGCCTTCCTATACTGATAGCGGAGCAGA-CTG
64 TGACAGCAG-AGCAACT-GAAGATAC-AGATCTTGCCTTCCTATACTGACAGCGAAGCAGATC-G
* * * *
15241575 AAGATAGCAAATCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGT
125 AAGACA-CCAATCTTGCCTTCCTATATTGACAGCGGAGCAGACTGAAGATAGT
* * *
15241628 AGATCTTGCATTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTGTACTG
1 AGATCTTGCCTTCCTGTACTAACAGCGAAGCAGATCGAAGACACCAGTCTTGCCTTCCTGTACTG
* *
15241693 ACAGCAGAGCAGACTGAAGATAGCAGATCTTGCCTTTCTGTACTGACAGCGAAGCAGATCGAAGA
66 ACAGCAGAGCA-ACTGAAGATA-CAGATCTTGCCTTCCTATACTGACAGCGAAGCAGATCGAAGA
* * * * *
15241758 CACCAACCTTGCCTTTCTATATTGACAGCGGAGTAAACTGAAGATAAT
129 CACCAATCTTGCCTTCCTATATTGACAGCGGAGCAGACTGAAGATAGT
* * * * * * *
15241806 AGATCTTGCGTTCCTGTACTAACAACAAAGTAGATCGAAGACACCAGTCTTTCCTCCCTGGGT-T
1 AGATCTTGCCTTCCTGTACTAACAGCGAAGCAGATCGAAGACACCAGTCTTGCCTTCCT--GTAC
* * **
15241870 TG-CAGCGGAGCAAACTGAAGATAACAGATATTGCCTTCCTATACTGACAGCGAAATAGATCGAA
64 TGACAGCAGAGC-AACTGAAGAT-ACAGATCTTGCCTTCCTATACTGACAGCGAAGCAGATCGAA
* * ** *
15241934 GACACCAATCTTGCCTCCCTGGAT-TTG-TAGTAGAGCAGACTGAAGATAGC
127 GACACCAATCTTGCCTTCCT--ATATTGACAGCGGAGCAGACTGAAGATAGT
* *
15241984 AGATCTTGCCTTCCTGTACTAACAGTGAAGCAGATCGAAGATACCA
1 AGATCTTGCCTTCCTGTACTAACAGCGAAGCAGATCGAAGACACCA
15242030 TAGTTTGTAG
Statistics
Matches: 336, Mismatches: 54, Indels: 25
0.81 0.13 0.06
Matches are distributed among these distances:
178 247 0.74
179 83 0.25
180 6 0.02
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (176 bp):
AGATCTTGCCTTCCTGTACTAACAGCGAAGCAGATCGAAGACACCAGTCTTGCCTTCCTGTACTG
ACAGCAGAGCAACTGAAGATACAGATCTTGCCTTCCTATACTGACAGCGAAGCAGATCGAAGACA
CCAATCTTGCCTTCCTATATTGACAGCGGAGCAGACTGAAGATAGT
Found at i:15241841 original size:89 final size:89
Alignment explanation
Indices: 15241446--15242029 Score: 493
Period size: 89 Copynumber: 6.6 Consensus size: 89
15241436 TTCCTCAAAC
** * * * *
15241446 AACAGATCTTGCCTTCCTGTACTGACAGCGGAGCAGA-CTGAAAATAACAGATCTTGCCTTCCTG
1 AACAGATCTTGCCTTCCTGTACTGACAGCAAAGCAGATC-GAAGACACCA-ACCTTGCCTTCCTG
* *
15241510 TACTGACAGTGAAGCAAA-TCGAAGA-
64 TACTGACAGCGGAGCAAACT-GAAGAT
* * * * ** * * *
15241535 CACTAG-CCTTGCCTTCCTATACTGATAGCGGAGCAGA-CTGAAGATAGCAAATCTTGCCTTCCT
1 AAC-AGATCTTGCCTTCCTGTACTGACAGCAAAGCAGATC-GAAGACA-CCAACCTTGCCTTCCT
*
15241598 GTACTGACAGCGGAGCAGACTGAAGAT
63 GTACTGACAGCGGAGCAAACTGAAGAT
** * * *
15241625 AGTAGATCTTGCATTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTGTA
1 AACAGATCTTGCCTTCCTGTACTGACAGCAAAGCAGATCGAAGACACCAACCTTGCCTTCCTGTA
* *
15241690 CTGACAGCAGAGCAGACTGAAGAT
66 CTGACAGCGGAGCAAACTGAAGAT
* * * * *
15241714 AGCAGATCTTGCCTTTCTGTACTGACAGCGAAGCAGATCGAAGACACCAACCTTGCCTTTCTATA
1 AACAGATCTTGCCTTCCTGTACTGACAGCAAAGCAGATCGAAGACACCAACCTTGCCTTCCTGTA
* *
15241779 TTGACAGCGGAGTAAACTGAAGAT
66 CTGACAGCGGAGCAAACTGAAGAT
* * * * * ** * *
15241803 AATAGATCTTGCGTTCCTGTACTAACAACAAAGTAGATCGAAGACACCAGTCTTTCCTCCCTGGG
1 AACAGATCTTGCCTTCCTGTACTGACAGCAAAGCAGATCGAAGACACCAACCTTGCCTTCCT--G
*
15241868 T-TTG-CAGCGGAGCAAACTGAAGAT
64 TACTGACAGCGGAGCAAACTGAAGAT
* * * * * *
15241892 AACAGATATTGCCTTCCTATACTGACAGCGAAA-TAGATCGAAGACACCAATCTTGCCTCCCTGG
1 AACAGATCTTGCCTTCCTGTACTGACAGC-AAAGCAGATCGAAGACACCAACCTTGCCTTCCTGT
* * ** *
15241956 ATTTG-TAGTAGAGCAGACTGAAGAT
65 A-CTGACAGCGGAGCAAACTGAAGAT
* * ** *
15241981 AGCAGATCTTGCCTTCCTGTACTAACAGTGAAGCAGATCGAAGATACCA
1 AACAGATCTTGCCTTCCTGTACTGACAGCAAAGCAGATCGAAGACACCA
15242030 TAGTTTGTAG
Statistics
Matches: 414, Mismatches: 69, Indels: 24
0.82 0.14 0.05
Matches are distributed among these distances:
87 1 0.00
88 2 0.00
89 367 0.89
90 42 0.10
91 2 0.00
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (89 bp):
AACAGATCTTGCCTTCCTGTACTGACAGCAAAGCAGATCGAAGACACCAACCTTGCCTTCCTGTA
CTGACAGCGGAGCAAACTGAAGAT
Found at i:15241906 original size:223 final size:224
Alignment explanation
Indices: 15241444--15241920 Score: 552
Period size: 223 Copynumber: 2.1 Consensus size: 224
15241434 TGTTCCTCAA
*
15241444 ACAACAGATCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAAATAACAGATCTTGCCTTCCT
1 ACAACAGATCTTGCCTTCCTGTACTGACAGCAGAGCAGACTGAAAATAACAGATCTTGCCTTCCT
* * * * *
15241509 GTACTGACAGTGAAGCAAATCGAAGACACTAGCCTTGCCTTCCTATACTGATAGCGGAGCAGACT
66 GTACTGACAGCGAAGCAAATCGAAGACACCAACCTTGCCTTCCTATACTGACAGCGGAGCAAACT
* * * ** * **
15241574 GAAGATAGCAAATCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGTAGATCTTGCAT
131 GAAGATAACAAATCTTGCCTTCCTGTACTAACAACAAAGCAGACTGAAGACACCAGATCTTGCAT
* *
15241639 TCCTGTACTGACAGCGAAGCAGATCGAAG
196 CCCTGTACTGACAGCGAAGCAAATCGAAG
* * * * *
15241668 ACACCAG-CCTTGCCTTCCTGTACTGACAGCAGAGCAGACTGAAGATAGCAGATCTTGCCTTTCT
1 ACAACAGATCTTGCCTTCCTGTACTGACAGCAGAGCAGACTGAAAATAACAGATCTTGCCTTCCT
* * * *
15241732 GTACTGACAGCGAAGCAGATCGAAGACACCAACCTTGCCTTTCTATATTGACAGCGGAGTAAACT
66 GTACTGACAGCGAAGCAAATCGAAGACACCAACCTTGCCTTCCTATACTGACAGCGGAGCAAACT
* * * * * *
15241797 GAAGATAATAGATCTTGCGTTCCTGTACTAACAACAAAGTAGA-TCGAAGACACCAG-TCTTTCC
131 GAAGATAACAAATCTTGCCTTCCTGTACTAACAACAAAGCAGACT-GAAGACACCAGATCTTGCA
* *
15241860 TCCCTGGGT-TTG-CAGCGGAGCAAA-CTGAAG
195 TCCCT--GTACTGACAGCGAAGCAAATC-GAAG
* * *
15241890 ATAACAGATATTGCCTTCCTATACTGACAGC
1 ACAACAGATCTTGCCTTCCTGTACTGACAGC
15241921 GAAATAGATC
Statistics
Matches: 210, Mismatches: 38, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
221 1 0.00
222 29 0.14
223 172 0.82
224 8 0.04
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (224 bp):
ACAACAGATCTTGCCTTCCTGTACTGACAGCAGAGCAGACTGAAAATAACAGATCTTGCCTTCCT
GTACTGACAGCGAAGCAAATCGAAGACACCAACCTTGCCTTCCTATACTGACAGCGGAGCAAACT
GAAGATAACAAATCTTGCCTTCCTGTACTAACAACAAAGCAGACTGAAGACACCAGATCTTGCAT
CCCTGTACTGACAGCGAAGCAAATCGAAG
Found at i:15242080 original size:31 final size:31
Alignment explanation
Indices: 15242014--15242080 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
15242004 AACAGTGAAG
* * * *
15242014 CAGATCGAAGATACCATAGTTTGTAGCGAAG
1 CAGATCGAAGACACCATAGTTTGCAGCAAAA
*
15242045 CAGATCGAAGACACCATGGTTTGCAGCAAAA
1 CAGATCGAAGACACCATAGTTTGCAGCAAAA
15242076 CAGAT
1 CAGAT
15242081 TAAAGATAGC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.19
Consensus pattern (31 bp):
CAGATCGAAGACACCATAGTTTGCAGCAAAA
Found at i:15242492 original size:44 final size:45
Alignment explanation
Indices: 15242379--15242505 Score: 118
Period size: 44 Copynumber: 2.9 Consensus size: 45
15242369 CTCATCTTTC
* *
15242379 TGAAGTTGCAGTAGAGCAGGTTGAA-ATAGCAAACCTTATCGCCA
1 TGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAACCTTATAGCCA
* ** * *
15242423 TGAAGTTGCAGT-GGGACA-AGTTGAAGATA-CAAGTCTTATATCCT
1 TGAAGTTGCAGTAGAG-CAGA-TTGAAGATAGCAAACCTTATAGCCA
* * *
15242467 TGAAGTTGCAGTAGAGCAGACTGAAGATAGTAAATCTTA
1 TGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAACCTTA
15242506 CCTCTGAAGT
Statistics
Matches: 66, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
43 2 0.03
44 51 0.77
45 13 0.20
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (45 bp):
TGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAACCTTATAGCCA
Done.