Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 47 of 226
Found at i:15877480 original size:45 final size:45
Alignment explanation
Indices: 15877428--15877514 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
15877418 ACATAAGGAA
*
15877428 GGGCTGAAGTAGGGATGACATCGCGACGTGGAGTCCTTTGATATG
1 GGGCTGAAGCAGGGATGACATCGCGACGTGGAGTCCTTTGATATG
*
15877473 GGGCTGAAGCAGGGATGACATTGCGACGTGGAGTCCTTTGAT
1 GGGCTGAAGCAGGGATGACATCGCGACGTGGAGTCCTTTGAT
15877515 GTGGCGACGA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.22, C:0.16, G:0.38, T:0.24
Consensus pattern (45 bp):
GGGCTGAAGCAGGGATGACATCGCGACGTGGAGTCCTTTGATATG
Found at i:15880463 original size:104 final size:103
Alignment explanation
Indices: 15880337--15880569 Score: 333
Period size: 104 Copynumber: 2.3 Consensus size: 103
15880327 ATTGAATACG
* *
15880337 AAGGGGGTTGCTAAGTGATGATTCCCCCAAGGGGTTGCTAAGTGTTGATTCTCCGACTCATTGGT
1 AAGGGGGTTGCTAAGTGATGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
* * *
15880402 GGTTGCTAAGTGCTGATTCCACCGTATCCTTGAATATAA
66 GGTTGCTAAATGCTGATCCCACCGTAT-CTTAAATATAA
* *
15880441 AAGGGGGTTGCTAAGTGCTGATTCCTCCAAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
1 AAGGGGGTTGCTAAGTGATGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
* * *
15880506 GGTTGCTAAATGCTGATCCCACTGTATCTTAAATGTGA
66 GGTTGCTAAATGCTGATCCCACCGTATCTTAAATATAA
* * *
15880544 AA-GGGGTTTCTAAGTGTTTATTCCCC
1 AAGGGGGTTGCTAAGTGATGATTCCCC
15880570 GAATTACTGG
Statistics
Matches: 115, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
102 20 0.17
103 10 0.09
104 85 0.74
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (103 bp):
AAGGGGGTTGCTAAGTGATGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
GGTTGCTAAATGCTGATCCCACCGTATCTTAAATATAA
Found at i:15880600 original size:33 final size:33
Alignment explanation
Indices: 15880548--15880663 Score: 151
Period size: 33 Copynumber: 3.4 Consensus size: 33
15880538 ATGTGAAAGG
* *
15880548 GGTTTCTAAGTGTTTATTCCCCGAATTACTGGT
1 GGTTGCTAAGTGTTGATTCCCCGAATTACTGGT
*
15880581 GGTTGCTAAGTGTTGATTCCCCGAATTACTAGTGAAGG
1 GGTTGCTAAGTGTTGATTCCCCGAATTAC---TG--GT
*
15880619 GGTTGCTAAGTGTTGATTCCCCGAATCACTGGT
1 GGTTGCTAAGTGTTGATTCCCCGAATTACTGGT
15880652 GGTTGCTAAGTG
1 GGTTGCTAAGTG
15880664 CTGAATCCAC
Statistics
Matches: 73, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
33 40 0.55
35 2 0.03
36 2 0.03
38 29 0.40
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.35
Consensus pattern (33 bp):
GGTTGCTAAGTGTTGATTCCCCGAATTACTGGT
Found at i:15880638 original size:71 final size:75
Alignment explanation
Indices: 15880469--15880667 Score: 248
Period size: 71 Copynumber: 2.7 Consensus size: 75
15880459 TGATTCCTCC
* * * * *
15880469 AAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAATGCTGATCCCACTGTATC
1 AAGGGGTTGCTAAGTGTTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATCCCACTGTATA
15880534 TTAAATGTGA
66 TTAAATGTGA
* * * *
15880544 AAGGGGTTTCTAAGTGTTTATTCCCCGAATTACTGGTGGTTGCTAAGTGTTGATTCCC-C-G-A-
1 AAGGGGTTGCTAAGTGTTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGA-TCCCACTGTAT
*
15880605 ATT-ACTAGTG-
65 ATTAAAT-GTGA
15880615 AAGGGGTTGCTAAGTGTTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGA
1 AAGGGGTTGCTAAGTGTTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGA
15880668 ATCCACCGAT
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
71 51 0.47
72 5 0.05
73 1 0.01
74 1 0.01
75 46 0.43
76 4 0.04
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (75 bp):
AAGGGGTTGCTAAGTGTTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATCCCACTGTATA
TTAAATGTGA
Found at i:15882434 original size:21 final size:21
Alignment explanation
Indices: 15882388--15882460 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 21
15882378 CATCGTTTCA
* * *
15882388 CATAAGTGTTAAACAGAAACC
1 CATAAGGGTTGAACGGAAACC
* * * *
15882409 GATAAGGGTTGAATGGAAGCT
1 CATAAGGGTTGAACGGAAACC
* *
15882430 CATAAGAGCTGAACGGAAACC
1 CATAAGGGTTGAACGGAAACC
15882451 CATAAGGGTT
1 CATAAGGGTT
15882461 AAACTAAAGC
Statistics
Matches: 37, Mismatches: 15, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.19
Consensus pattern (21 bp):
CATAAGGGTTGAACGGAAACC
Found at i:15882471 original size:42 final size:43
Alignment explanation
Indices: 15882403--15882515 Score: 142
Period size: 42 Copynumber: 2.7 Consensus size: 43
15882393 GTGTTAAACA
* * * *
15882403 GAAACCGATAAGGGTTGAA-TGGAAGCTCATAAGAGCTGAACG
1 GAAACCCATAAGGGTTAAACTGAAAGCTCAAAAGAGCTGAACG
*
15882445 GAAACCCATAAGGGTTAAACT-AAAGCTGAAAAGAGCTGAACG
1 GAAACCCATAAGGGTTAAACTGAAAGCTCAAAAGAGCTGAACG
* *
15882487 GAAACCCATTAGGGTTAAACAGAAA-CTCA
1 GAAACCCATAAGGGTTAAACTGAAAGCTCA
15882516 TATGAGTTAA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 57 0.93
43 4 0.07
ACGTcount: A:0.42, C:0.17, G:0.25, T:0.16
Consensus pattern (43 bp):
GAAACCCATAAGGGTTAAACTGAAAGCTCAAAAGAGCTGAACG
Found at i:15889755 original size:20 final size:20
Alignment explanation
Indices: 15889713--15889754 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
15889703 TAGAAAGTTC
*
15889713 AAACTTATTATTATTCGATA
1 AAACTTATTATTATTAGATA
15889733 AAACTTATTATTATTAG-TA
1 AAACTTATTATTATTAGATA
15889752 AAA
1 AAA
15889755 AGTTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (20 bp):
AAACTTATTATTATTAGATA
Found at i:15899788 original size:24 final size:24
Alignment explanation
Indices: 15899773--15899824 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
15899763 AATCAAAGTC
15899773 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
15899797 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
15899821 AAAT
1 AAAT
15899825 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:15901058 original size:13 final size:14
Alignment explanation
Indices: 15901034--15901098 Score: 52
Period size: 13 Copynumber: 5.0 Consensus size: 14
15901024 AAAAATATTT
15901034 ATAAATATTAAATA
1 ATAAATATTAAATA
15901048 ATAAA-ATT--A-A
1 ATAAATATTAAATA
*
15901058 ATAAATTTTAAAT-
1 ATAAATATTAAATA
*
15901071 ATAAAATATTAATTA
1 AT-AAATATTAAATA
*
15901086 AT-AATATAAAATA
1 ATAAATATTAAATA
15901099 TTATTTAACA
Statistics
Matches: 40, Mismatches: 5, Indels: 13
0.69 0.09 0.22
Matches are distributed among these distances:
10 6 0.15
11 3 0.08
13 15 0.38
14 14 0.35
15 2 0.05
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
ATAAATATTAAATA
Found at i:15901091 original size:20 final size:20
Alignment explanation
Indices: 15901068--15901106 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
15901058 ATAAATTTTA
15901068 AATATAAAATATTAATTAAT
1 AATATAAAATATTAATTAAT
*
15901088 AATATAAAATATTATTTAA
1 AATATAAAATATTAATTAA
15901107 CAAGCTTCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
AATATAAAATATTAATTAAT
Found at i:15902439 original size:16 final size:16
Alignment explanation
Indices: 15902415--15902468 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
15902405 TTTGGTTCGC
* *
15902415 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
15902431 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
*
15902447 TATAATGGAATAGAGG
1 TGTAATGGAATAGAGG
15902463 TGTAAT
1 TGTAAT
15902469 AGCAAATCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.33, T:0.31
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:15902721 original size:18 final size:17
Alignment explanation
Indices: 15902700--15902734 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15902690 TTATTATTAA
*
15902700 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
15902718 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
15902735 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:15902841 original size:18 final size:17
Alignment explanation
Indices: 15902820--15902854 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15902810 TTATTATTAA
*
15902820 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
15902838 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
15902855 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:15902852 original size:59 final size:57
Alignment explanation
Indices: 15902680--15902975 Score: 208
Period size: 59 Copynumber: 5.0 Consensus size: 57
15902670 TTAATCATAT
* *
15902680 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTC
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTA
* * * ** * * *
15902737 TTAATAATCA-ATATTCTTATATGAATTTATTAAAATCATAATATATGATACT-ATAAAATATAA
1 TT--TAA-CATA-ATTATTAT-TAAATATATTTTAATTAAAATATATGAT-TTAATAAAAT-T-A
* *
15902800 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTC
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTA
* * * ** * * *
15902857 TTAATAATCA-ATATTCTT-TTATGAATTTACTAAAATCATAATATATGATACT-ATAAAATATA
1 TT--TAA-CATA-ATTATTATTA--AATATATTTTAATTAAAATATATGAT-TTAATAAAAT-T-
15902919 A
57 A
15902920 TTTGAA-ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 TTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
15902976 CTTAATAATC
Statistics
Matches: 178, Mismatches: 38, Indels: 45
0.68 0.15 0.17
Matches are distributed among these distances:
57 4 0.02
58 4 0.02
59 66 0.37
60 31 0.17
61 63 0.35
62 6 0.03
63 4 0.02
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (57 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTA
Found at i:15902893 original size:120 final size:120
Alignment explanation
Indices: 15902680--15903012 Score: 623
Period size: 120 Copynumber: 2.8 Consensus size: 120
15902670 TTAATCATAT
15902680 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
15902745 CAATATTCTTATATGAATTTATTAAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
15902800 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
15902865 CAATATTCTTTTATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
*
15902920 TTTGAA-ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAA
1 TTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
15902984 TCAATATTCTTATATGAATTTACTAAAAT
65 TCAATATTCTTATATGAATTTACTAAAAT
15903013 ATATGATACT
Statistics
Matches: 208, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
120 206 0.99
121 2 0.01
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
Found at i:15902961 original size:18 final size:17
Alignment explanation
Indices: 15902938--15902974 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
15902928 AATTATTATT
15902938 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
15902954 AAATATATGATTTAATA
1 AAATATATGATTTAATA
15902971 AAAT
1 AAAT
15902975 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:15903017 original size:18 final size:19
Alignment explanation
Indices: 15902994--15903031 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
15902984 TCAATATTCT
15902994 TATATGA-A-TTTACTAAAA
1 TATATGATACTTTA-TAAAA
15903012 TATATGATACTTTATAAAA
1 TATATGATACTTTATAAAA
15903031 T
1 T
15903032 TAAAATTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 7 0.39
20 4 0.22
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (19 bp):
TATATGATACTTTATAAAA
Found at i:15906648 original size:16 final size:16
Alignment explanation
Indices: 15906627--15906678 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
15906617 TTTGGTTCGC
*
15906627 TGTATTAGATTAGAGG
1 TGTATTGGATTAGAGG
15906643 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
15906659 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
15906675 TGTA
1 TGTA
15906679 ATAGCAAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.27, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:15906931 original size:16 final size:16
Alignment explanation
Indices: 15906894--15906935 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
15906884 TTAATCATAT
*
15906894 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
15906910 TT-AAATATATTATAA
1 TTAAAATATATTATAA
15906925 TTAAAATATAT
1 TTAAAATATAT
15906936 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:15906942 original size:14 final size:15
Alignment explanation
Indices: 15906903--15906944 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
15906893 TTTAAACATA
*
15906903 ATTATTATTAAATAT
1 ATTATAATTAAATAT
15906918 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
15906932 A-TATAATTTAATA
1 ATTATAATTAAATA
15906945 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:15907153 original size:15 final size:15
Alignment explanation
Indices: 15907110--15907163 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 15
15907100 TATGAATTTG
15907110 TATAATTTAA-AATA
1 TATAATTTAATAATA
* *
15907124 -ATTA-TTATTAA-A
1 TATAATTTAATAATA
15907136 TATAATTTAATAATA
1 TATAATTTAATAATA
*
15907151 TATAATTTCATAA
1 TATAATTTAATAA
15907164 AATTCTTGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
12 4 0.13
13 8 0.26
14 6 0.19
15 13 0.42
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
TATAATTTAATAATA
Found at i:15907281 original size:91 final size:90
Alignment explanation
Indices: 15907085--15907340 Score: 444
Period size: 91 Copynumber: 2.8 Consensus size: 90
15907075 TAATTATACC
* * *
15907085 TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAA-TT-TAATA
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTATAATG
15907148 ATATATAATTTCATAAAATTCTTGA
66 ATATATAATTTCATAAAATTCTTGA
15907173 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTCATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTT-ATAAT
15907238 GATATATAATTTCATAAAATTCTTGA
65 GATATATAATTTCATAAAATTCTTGA
*
15907264 TAATAAATTTTTTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTT-ATAAT
15907329 GATATATAATTT
65 GATATATAATTT
15907341 ATACATTTAA
Statistics
Matches: 160, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
88 54 0.34
89 2 0.01
91 104 0.65
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (90 bp):
TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTATAATG
ATATATAATTTCATAAAATTCTTGA
Found at i:15907335 original size:44 final size:43
Alignment explanation
Indices: 15907110--15907341 Score: 184
Period size: 44 Copynumber: 5.2 Consensus size: 43
15907100 TATGAATTTG
*
15907110 TATAATTTAAAATAATTATTATTAAATATAATTTAATAATATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
* ** * * * *
15907153 TA-ATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAATT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATATA
*
15907198 TATAATTTAAAATAATTAATATTAAATATAATTTCATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
** * * ** *
15907242 TATAATTTCATAAAATTCTTGATAATAAAT-TTTTTTATATGAATTTA
1 TATAA-TT--TAAAATAATTAATATTAAATATAATTTA-AT-AATATA
15907289 TATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
15907333 TATAATTTA
1 TATAATTTA
15907342 TACATTTAAC
Statistics
Matches: 142, Mismatches: 31, Indels: 31
0.70 0.15 0.15
Matches are distributed among these distances:
42 4 0.03
43 12 0.08
44 71 0.50
45 17 0.12
46 10 0.07
47 25 0.18
48 3 0.02
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.47
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
Found at i:15909916 original size:3 final size:3
Alignment explanation
Indices: 15909910--15909960 Score: 57
Period size: 3 Copynumber: 17.0 Consensus size: 3
15909900 GCTGTTTGCA
* * * * *
15909910 GAT GAT GAT GAT GAT GAT GAT GAT GAT GTT GTT GTT GAA AAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
15909958 GAT
1 GAT
15909961 TCTGCACCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.31, C:0.00, G:0.31, T:0.37
Consensus pattern (3 bp):
GAT
Found at i:15918135 original size:21 final size:21
Alignment explanation
Indices: 15918109--15918156 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
15918099 CCATGTGACC
15918109 GCACCTTAGATCTTCCAACCT
1 GCACCTTAGATCTTCCAACCT
*
15918130 GCACCTTAGATCTTCTAACCT
1 GCACCTTAGATCTTCCAACCT
15918151 GCACCT
1 GCACCT
15918157 GTTTAAGACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.23, C:0.38, G:0.10, T:0.29
Consensus pattern (21 bp):
GCACCTTAGATCTTCCAACCT
Found at i:15919992 original size:29 final size:24
Alignment explanation
Indices: 15919934--15919979 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
15919924 ATTTTTTTAA
15919934 AAACCAAACTGATCACAAACATTT
1 AAACCAAACTGATCACAAACATTT
15919958 AAACCAAACTGATCACAAACAT
1 AAACCAAACTGATCACAAACAT
15919980 GGAAATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.52, C:0.26, G:0.04, T:0.17
Consensus pattern (24 bp):
AAACCAAACTGATCACAAACATTT
Found at i:15920732 original size:41 final size:41
Alignment explanation
Indices: 15920687--15920857 Score: 252
Period size: 41 Copynumber: 4.2 Consensus size: 41
15920677 AGCACTTCAT
* * * * *
15920687 CTGCTAGGTTTAAAGTCTAATTCAGTTCACTGGCACTTAGC
1 CTGCTAGGCTTATAGCCTGATTCAGTTCACCGGCACTTAGC
* *
15920728 CTGCTAGACTTATAGCCTGATTCAGTTCACCGACACTTAGC
1 CTGCTAGGCTTATAGCCTGATTCAGTTCACCGGCACTTAGC
*
15920769 CTGCTAGGCTTATAGCCTGATTCAATTCACCGGCACTTAGC
1 CTGCTAGGCTTATAGCCTGATTCAGTTCACCGGCACTTAGC
* *
15920810 CTACTAGGCTTATAGCCTGATTCGGTTCACCGGCACTTAGC
1 CTGCTAGGCTTATAGCCTGATTCAGTTCACCGGCACTTAGC
15920851 CTGCTAG
1 CTGCTAG
15920858 ACATATAGTC
Statistics
Matches: 116, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 116 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (41 bp):
CTGCTAGGCTTATAGCCTGATTCAGTTCACCGGCACTTAGC
Found at i:15922644 original size:13 final size:13
Alignment explanation
Indices: 15922626--15922652 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15922616 CACCAACGAT
15922626 AAAATTTTCACAC
1 AAAATTTTCACAC
15922639 AAAATTTTCACAC
1 AAAATTTTCACAC
15922652 A
1 A
15922653 TATAAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:15925786 original size:30 final size:30
Alignment explanation
Indices: 15925751--15925808 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
15925741 CCTCGACTCT
*
15925751 AACTTTTTCAAAATTACAATTTTTCCCCTA
1 AACTTTTGCAAAATTACAATTTTTCCCCTA
* *
15925781 AACTTTTGCATAATTACATTTTTTCCCC
1 AACTTTTGCAAAATTACAATTTTTCCCC
15925809 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.45
Consensus pattern (30 bp):
AACTTTTGCAAAATTACAATTTTTCCCCTA
Found at i:15931282 original size:27 final size:28
Alignment explanation
Indices: 15931120--15931269 Score: 232
Period size: 28 Copynumber: 5.4 Consensus size: 28
15931110 GAGATTGGCG
* * * *
15931120 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
15931149 CT-AGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
15931176 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
15931204 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
15931232 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
15931259 CTGAGTGTGCG
1 CTAAGTGTGCG
15931270 GACTTAATAT
Statistics
Matches: 115, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 35 0.30
28 78 0.68
29 2 0.02
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:15939291 original size:27 final size:28
Alignment explanation
Indices: 15939128--15939278 Score: 241
Period size: 28 Copynumber: 5.4 Consensus size: 28
15939118 GAGATTGGCG
* * * *
15939128 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
15939157 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
15939185 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
15939213 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
15939241 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
15939268 CTGAGTGTGCG
1 CTAAGTGTGCG
15939279 GACTTAATAT
Statistics
Matches: 117, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
27 24 0.21
28 78 0.67
29 15 0.13
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:15939292 original size:84 final size:85
Alignment explanation
Indices: 15939128--15939292 Score: 228
Period size: 83 Copynumber: 2.0 Consensus size: 85
15939118 GAGATTGGCG
* *
15939128 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGT
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGT
* *
15939193 GCGAGTTTGATTATATAGCA
66 GCGAGCTTAATTATATAGCA
* * *
15939213 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGT
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGT
15939276 GCG-GACTTAATATATAT
66 GCGAG-CTTAAT-TATAT
15939293 TTTGAATCAC
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
82 1 0.01
83 28 0.39
84 27 0.38
85 15 0.21
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (85 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGT
GCGAGCTTAATTATATAGCA
Found at i:15944119 original size:50 final size:50
Alignment explanation
Indices: 15944003--15944295 Score: 417
Period size: 50 Copynumber: 5.8 Consensus size: 50
15943993 GATCATAACA
* ** *
15944003 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTACTCATGTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCT-CTCATCTCGG
* **
15944054 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *
15944104 TGCCAACGCCATGTCCCAGACATGGTCTTATATGAGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
15944154 TGCTC-ATGCCATGTCCCAGACATGGTCTTACAGGGGACCTATCATCTCGG
1 TGC-CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
15944204 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
15944254 TGCCAGTGTCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
15944296 TTACCCAAAT
Statistics
Matches: 215, Mismatches: 25, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
49 1 0.00
50 179 0.83
51 35 0.16
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:15944451 original size:15 final size:15
Alignment explanation
Indices: 15944431--15944465 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
15944421 ATTGCTGGAA
15944431 AATAACCACATTAAC
1 AATAACCACATTAAC
15944446 AATAACCACATTAAC
1 AATAACCACATTAAC
15944461 AATAA
1 AATAA
15944466 TTATTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.57, C:0.23, G:0.00, T:0.20
Consensus pattern (15 bp):
AATAACCACATTAAC
Found at i:15944682 original size:30 final size:30
Alignment explanation
Indices: 15944647--15944704 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
15944637 CCTCGACTCT
*
15944647 AACTTTTTCAAAATTACGA-TTTTGCCCCTA
1 AACTTTTACAAAATTAC-ATTTTTGCCCCTA
*
15944677 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACATTTTTGCCCC
15944705 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACATTTTTGCCCCTA
Found at i:15947394 original size:24 final size:25
Alignment explanation
Indices: 15947351--15947405 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
15947341 CCATCTGTTA
15947351 TTTATTTTTATTTTATTTTA-TAAC
1 TTTATTTTTATTTTATTTTATTAAC
* *
15947375 TTTATGTTTTGTTTTA-TTTATTAAT
1 TTTAT-TTTTATTTTATTTTATTAAC
15947400 TTTATT
1 TTTATT
15947406 ACATTTTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.73
Consensus pattern (25 bp):
TTTATTTTTATTTTATTTTATTAAC
Found at i:15948804 original size:19 final size:19
Alignment explanation
Indices: 15948744--15948804 Score: 51
Period size: 18 Copynumber: 3.4 Consensus size: 19
15948734 TATTAGTTTC
15948744 AATACATGCATCTAATA-ATA
1 AATACATGCATCT--TAGATA
*
15948764 AAT--ATGTATC-TAG-TA
1 AATACATGCATCTTAGATA
*
15948779 CATACATGCATCTTAGATA
1 AATACATGCATCTTAGATA
15948798 AATACAT
1 AATACAT
15948805 TCATGCATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 11
0.68 0.09 0.23
Matches are distributed among these distances:
15 6 0.19
17 6 0.19
18 9 0.28
19 8 0.25
20 3 0.09
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.33
Consensus pattern (19 bp):
AATACATGCATCTTAGATA
Found at i:15958394 original size:23 final size:23
Alignment explanation
Indices: 15958368--15958411 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
15958358 TTACCATCTT
*
15958368 TCTAAATAAAATATTAATAAACA
1 TCTAAACAAAATATTAATAAACA
*
15958391 TCTAAGCAAAATATTAATAAA
1 TCTAAACAAAATATTAATAAA
15958412 ATAATACTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.30
Consensus pattern (23 bp):
TCTAAACAAAATATTAATAAACA
Found at i:15959603 original size:22 final size:22
Alignment explanation
Indices: 15959561--15959603 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
15959551 TTAATTTACC
* *
15959561 AAATTATCAATTTGTCCTTTAA
1 AAATTATCAAATTGTCATTTAA
15959583 AAATTATCCAAATT-TCATTTA
1 AAATTAT-CAAATTGTCATTTA
15959604 TTTAATCACT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.40, C:0.14, G:0.02, T:0.44
Consensus pattern (22 bp):
AAATTATCAAATTGTCATTTAA
Found at i:15964376 original size:34 final size:34
Alignment explanation
Indices: 15964331--15964398 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
15964321 TTGCATCTAA
* *
15964331 ATGTTGTTTTAATATTGTAGAAAAATGTATTATT
1 ATGTTGATTTAAAATTGTAGAAAAATGTATTATT
** *
15964365 ATGTTGATTTAAAATTGTTTAGAAATGTATTATT
1 ATGTTGATTTAAAATTGTAGAAAAATGTATTATT
15964399 CTGTGATGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (34 bp):
ATGTTGATTTAAAATTGTAGAAAAATGTATTATT
Found at i:15975973 original size:26 final size:26
Alignment explanation
Indices: 15975937--15975988 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15975927 CACCACTGAA
* *
15975937 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
15975963 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
15975989 CTTTTCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:15976062 original size:70 final size:71
Alignment explanation
Indices: 15975949--15976098 Score: 248
Period size: 70 Copynumber: 2.1 Consensus size: 71
15975939 GGGGAATCAT
* *
15975949 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATGG
15976013 ATATCG
66 ATATCG
***
15976019 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATGG
15976084 ATATCG
66 ATATCG
15976090 CACTTAGCA
1 CACTTAGCA
15976099 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
70 44 0.59
71 30 0.41
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATGG
ATATCG
Found at i:15976202 original size:104 final size:103
Alignment explanation
Indices: 15976018--15976240 Score: 367
Period size: 104 Copynumber: 2.2 Consensus size: 103
15976008 AATGGATATC
15976018 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
* *
15976083 GATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
15976121 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
15976186 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
65 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
15976225 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
15976241 TTATATACAA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 17 0.15
104 94 0.84
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (103 bp):
GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:15976601 original size:29 final size:29
Alignment explanation
Indices: 15976568--15976631 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
15976558 TAATCCACCA
15976568 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
15976597 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
15976627 CCCAA
1 CCCAA
15976632 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:15976605 original size:30 final size:30
Alignment explanation
Indices: 15976575--15976631 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
15976565 CCACCCAACT
15976575 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
15976604 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
15976632 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:15983598 original size:70 final size:71
Alignment explanation
Indices: 15983482--15983632 Score: 241
Period size: 70 Copynumber: 2.1 Consensus size: 71
15983472 CGGGAATCAT
* *
15983482 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAA-CCCCTTTTCATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAGATACAATGG
15983546 ATATCG
66 ATATCG
***
15983552 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTT-ACATTTCAAAGATACAATG
15983617 GATATCG
65 GATATCG
15983624 CACTTAGCA
1 CACTTAGCA
15983633 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 37 0.50
71 7 0.09
72 30 0.41
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAGATACAATGG
ATATCG
Found at i:15983677 original size:102 final size:104
Alignment explanation
Indices: 15983551--15983772 Score: 360
Period size: 102 Copynumber: 2.2 Consensus size: 104
15983541 AATGGATATC
15983551 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
15983616 GGAT-ATCGCACTTAGCACCACCAATGAA-CCGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAATCCGGGAATCA
15983654 GCACTTAGC-ACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
15983718 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAATCCGGGAATCA
**
15983757 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
15983773 TTTATATACA
Statistics
Matches: 110, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
102 78 0.71
103 26 0.24
104 6 0.05
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAATCCGGGAATCA
Found at i:15984134 original size:29 final size:29
Alignment explanation
Indices: 15984101--15984164 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
15984091 TAATCCACCA
15984101 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
15984130 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
15984160 CCCAA
1 CCCAA
15984165 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:15984138 original size:30 final size:30
Alignment explanation
Indices: 15984108--15984164 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
15984098 CCACCCAACT
15984108 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
15984137 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
15984165 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:15985721 original size:13 final size:13
Alignment explanation
Indices: 15985703--15985727 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15985693 TAAACGTATT
15985703 ATATTTAAACTTA
1 ATATTTAAACTTA
15985716 ATATTTAAACTT
1 ATATTTAAACTT
15985728 TTTGTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (13 bp):
ATATTTAAACTTA
Found at i:15989950 original size:30 final size:31
Alignment explanation
Indices: 15989868--15989962 Score: 102
Period size: 30 Copynumber: 3.1 Consensus size: 31
15989858 TGAATTCAAA
* * * * *
15989868 TGTATATGTTTTAAATATTGTCGAATTTATT
1 TGTATATGATATATATATTGCCGAATTGATT
* * *
15989899 TATATGTAGATATATACATTGCCGAATTGATT
1 TGTATAT-GATATATATATTGCCGAATTGATT
15989931 TGTATATG-TATATATATTGCCGAATTGATT
1 TGTATATGATATATATATTGCCGAATTGATT
15989961 TG
1 TG
15989963 AGATCCCGTA
Statistics
Matches: 52, Mismatches: 11, Indels: 3
0.79 0.17 0.05
Matches are distributed among these distances:
30 23 0.44
31 6 0.12
32 23 0.44
ACGTcount: A:0.31, C:0.06, G:0.16, T:0.47
Consensus pattern (31 bp):
TGTATATGATATATATATTGCCGAATTGATT
Found at i:15990028 original size:48 final size:48
Alignment explanation
Indices: 15989954--15990142 Score: 288
Period size: 48 Copynumber: 3.9 Consensus size: 48
15989944 ATATTGCCGA
*
15989954 ATTGATTTGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGC
1 ATTGATTTGAGATCCCGTATAAGACCATATCTAGGATATGGCATCGGC
* * * *
15990002 ATCGATTTGAGATCTCGTATAAGACCATATCTGGGATATGGCATTGGC
1 ATTGATTTGAGATCCCGTATAAGACCATATCTAGGATATGGCATCGGC
* * *
15990050 ATTGATTTGAGATCCCATATAAAACCATATCTAGGATATGGTATCGGC
1 ATTGATTTGAGATCCCGTATAAGACCATATCTAGGATATGGCATCGGC
**
15990098 ATTGATTTGAGATTTCGTATAAGACCATATCTAGGATATGGCATC
1 ATTGATTTGAGATCCCGTATAAGACCATATCTAGGATATGGCATC
15990143 AATATGAGAC
Statistics
Matches: 126, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 126 1.00
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (48 bp):
ATTGATTTGAGATCCCGTATAAGACCATATCTAGGATATGGCATCGGC
Found at i:15993166 original size:31 final size:31
Alignment explanation
Indices: 15993131--15993189 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
15993121 ATTTAATAGA
*
15993131 GAGTGACCAAAATAGAAACAAACTAAAACGT
1 GAGTGACCAAAATAAAAACAAACTAAAACGT
* * *
15993162 GAGTGGCCAAAATAAAAATAATCTAAAA
1 GAGTGACCAAAATAAAAACAAACTAAAA
15993190 ACGTTAGTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.56, C:0.14, G:0.15, T:0.15
Consensus pattern (31 bp):
GAGTGACCAAAATAAAAACAAACTAAAACGT
Found at i:15996322 original size:27 final size:27
Alignment explanation
Indices: 15996256--15996330 Score: 66
Period size: 28 Copynumber: 2.7 Consensus size: 27
15996246 TTCAATTTTA
*
15996256 TATTAAT-ATTAAAATAATAAAATAAAAG
1 TATTAATGTTTAAAATAAT--AATAAAAG
*
15996284 TATTATTGTTTAGAAATAATAATAAAA-
1 TATTAATGTTTA-AAATAATAATAAAAG
*
15996311 TATATAAT-TTTAAATTAATA
1 TAT-TAATGTTTAAAATAATA
15996331 TTAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
26 7 0.17
27 7 0.17
28 16 0.40
29 3 0.08
30 7 0.17
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (27 bp):
TATTAATGTTTAAAATAATAATAAAAG
Found at i:15996335 original size:6 final size:6
Alignment explanation
Indices: 15996309--15996358 Score: 57
Period size: 6 Copynumber: 8.3 Consensus size: 6
15996299 ATAATAATAA
* * *
15996309 AATATAT AATTTT AA-ATT AATATT AATATT AATATT ACTATT AACATT
1 AATAT-T AATATT AATATT AATATT AATATT AATATT AATATT AATATT
15996357 AA
1 AA
15996359 AATGTATAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
5 4 0.11
6 29 0.78
7 4 0.11
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (6 bp):
AATATT
Found at i:15996443 original size:8 final size:8
Alignment explanation
Indices: 15996420--15996463 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
15996410 ATAAAATAAA
*
15996420 ATAATTAT
1 ATAATTTT
15996428 ATAATTTT
1 ATAATTTT
*
15996436 ATAGTTTT
1 ATAATTTT
15996444 ATATATTTT
1 ATA-ATTTT
*
15996453 ACAATTTT
1 ATAATTTT
15996461 ATA
1 ATA
15996464 TTAAATATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
8 24 0.80
9 6 0.20
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (8 bp):
ATAATTTT
Found at i:15996453 original size:17 final size:18
Alignment explanation
Indices: 15996424--15996464 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
15996414 AATAAAATAA
* *
15996424 TTATATAATTTTATAGTT
1 TTATATAATTTTACAATT
15996442 TTATAT-ATTTTACAATT
1 TTATATAATTTTACAATT
15996459 TTATAT
1 TTATAT
15996465 TAAATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (18 bp):
TTATATAATTTTACAATT
Found at i:15996489 original size:23 final size:24
Alignment explanation
Indices: 15996461--15996511 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
15996451 TTACAATTTT
15996461 ATATTAA-ATATATAAAATAA-AAA
1 ATATTAATATATA-AAAATAATAAA
* *
15996484 ATATTACTATTTAAAAATAATAAA
1 ATATTAATATATAAAAATAATAAA
15996508 ATAT
1 ATAT
15996512 ATAACTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 13 0.54
24 11 0.46
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (24 bp):
ATATTAATATATAAAAATAATAAA
Found at i:15996909 original size:11 final size:11
Alignment explanation
Indices: 15996893--15996917 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
15996883 TTTTCTAACA
15996893 AATTAAAAAAC
1 AATTAAAAAAC
15996904 AATTAAAAAAC
1 AATTAAAAAAC
15996915 AAT
1 AAT
15996918 ATGTATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (11 bp):
AATTAAAAAAC
Found at i:15997220 original size:43 final size:43
Alignment explanation
Indices: 15997159--15997301 Score: 207
Period size: 43 Copynumber: 3.3 Consensus size: 43
15997149 GCGTCGGTAA
*
15997159 CTTTAGCGGCGCTTATCCATCAAACGCCGCTATAGACCATGGT
1 CTTTAGCGGCGCTTATCCAACAAACGCCGCTATAGACCATGGT
* * *
15997202 CTTTAGTGGCGCTTATCCACCAAACGCCGCTATAGAACATGGT
1 CTTTAGCGGCGCTTATCCAACAAACGCCGCTATAGACCATGGT
*
15997245 CTTTAGCGGCGCTTAACCAACAAACGCCGCTATAG-CTCATGGT
1 CTTTAGCGGCGCTTATCCAACAAACGCCGCTATAGAC-CATGGT
* *
15997288 TTTTAGCAGCGCTT
1 CTTTAGCGGCGCTT
15997302 TTAAAAAAAC
Statistics
Matches: 90, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
43 90 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (43 bp):
CTTTAGCGGCGCTTATCCAACAAACGCCGCTATAGACCATGGT
Found at i:15997703 original size:21 final size:21
Alignment explanation
Indices: 15997616--15997706 Score: 137
Period size: 21 Copynumber: 4.3 Consensus size: 21
15997606 TTTAAGCTGT
15997616 TCTGCTTCCCTCGCTGCAGCC
1 TCTGCTTCCCTCGCTGCAGCC
*
15997637 TCTACTTCCCTCGCTGCAGCC
1 TCTGCTTCCCTCGCTGCAGCC
*
15997658 TCTACTTCCCTCGCTGCAGCC
1 TCTGCTTCCCTCGCTGCAGCC
* * *
15997679 TCTGCTTCTCTCGCTGCCGCA
1 TCTGCTTCCCTCGCTGCAGCC
15997700 TCTGCTT
1 TCTGCTT
15997707 TAAGCTGTTG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 65 1.00
ACGTcount: A:0.07, C:0.45, G:0.16, T:0.32
Consensus pattern (21 bp):
TCTGCTTCCCTCGCTGCAGCC
Found at i:15997783 original size:87 final size:87
Alignment explanation
Indices: 15997662--15997859 Score: 281
Period size: 87 Copynumber: 2.3 Consensus size: 87
15997652 GCAGCCTCTA
* * * * *
15997662 CTTCCCTCGCTGCAGCCTCTGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTGTTGCTGGAGTTGT
1 CTTCTCTCGATGCTGCCTCTGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTGTAGCTGGAGTTCT
15997727 TCATA-CTTTCGTTGAACCTCAG
66 TCATATCTTT-GTTGAACCTCAG
* * *
15997749 CTTCTCTCGTTGCTGCCTCTGCTTCTCTTGCTGCCGCATCTGCTTTAAGTTGTAGCTGGAGTTCT
1 CTTCTCTCGATGCTGCCTCTGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTGTAGCTGGAGTTCT
*
15997814 TCATATCTTTTTTGAACCTCAG
66 TCATATCTTTGTTGAACCTCAG
* *
15997836 CTTCTCTCGATGTTGCCTCCGCTT
1 CTTCTCTCGATGCTGCCTCTGCTT
15997860 TAAGTTGTGT
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
87 95 0.96
88 4 0.04
ACGTcount: A:0.11, C:0.31, G:0.19, T:0.39
Consensus pattern (87 bp):
CTTCTCTCGATGCTGCCTCTGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTGTAGCTGGAGTTCT
TCATATCTTTGTTGAACCTCAG
Found at i:15997790 original size:21 final size:21
Alignment explanation
Indices: 15997748--15997793 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
15997738 TTGAACCTCA
* * *
15997748 GCTTCTCTCGTTGCTGCCTCT
1 GCTTCTCTCGCTGCCGCATCT
*
15997769 GCTTCTCTTGCTGCCGCATCT
1 GCTTCTCTCGCTGCCGCATCT
15997790 GCTT
1 GCTT
15997794 TAAGTTGTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.02, C:0.37, G:0.20, T:0.41
Consensus pattern (21 bp):
GCTTCTCTCGCTGCCGCATCT
Found at i:16000871 original size:3 final size:3
Alignment explanation
Indices: 16000852--16000944 Score: 82
Period size: 3 Copynumber: 30.3 Consensus size: 3
16000842 TTTAGCAACT
* * *
16000852 TTA TTAA TTA GTTA TTA TTA TTA TTA TAA TTA TTA TCT- TTA TTG TTC
1 TTA TT-A TTA -TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
* * *
16000899 TTA TTA TTA TTA -TA TTCA TTA ATA TTA TTG TTA TTA TTA TTT TTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
16000944 T
1 T
16000945 ATTCACTTAT
Statistics
Matches: 73, Mismatches: 11, Indels: 12
0.76 0.11 0.12
Matches are distributed among these distances:
2 3 0.04
3 60 0.82
4 10 0.14
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:16000904 original size:33 final size:34
Alignment explanation
Indices: 16000864--16000949 Score: 108
Period size: 33 Copynumber: 2.6 Consensus size: 34
16000854 ATTAATTAGT
*
16000864 TATTATTATTATTATAATT-ATT-ATCTTTATTGT
1 TATTATTATTATTATAATTCATTAAT-ATTATTGT
*
16000897 TCTTATTATTATTAT-ATTCATTAATATTATTGT
1 TATTATTATTATTATAATTCATTAATATTATTGT
*
16000930 TATTATTATTTTTAT-ATTCA
1 TATTATTATTATTATAATTCA
16000950 CTTATGGAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
32 3 0.06
33 42 0.89
34 2 0.04
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (34 bp):
TATTATTATTATTATAATTCATTAATATTATTGT
Found at i:16002617 original size:23 final size:23
Alignment explanation
Indices: 16002574--16002618 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
16002564 TGCTTTTATA
*
16002574 CCCTAAAACCCGAAGCTATTAAT
1 CCCTAAAACCCGAAACTATTAAT
*
16002597 CCCTATAACCCGTAAAC-ATTAA
1 CCCTAAAACCCG-AAACTATTAA
16002619 AATTAAAGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.40, C:0.31, G:0.07, T:0.22
Consensus pattern (23 bp):
CCCTAAAACCCGAAACTATTAAT
Found at i:16003658 original size:40 final size:39
Alignment explanation
Indices: 16003581--16003699 Score: 121
Period size: 40 Copynumber: 3.0 Consensus size: 39
16003571 GCGCTTTTTG
* * * *
16003581 TAAAACGCCGCTAATGCTTGGTTTTAGCGGCGTTTTTTTA
1 TAAAACGCCGCTAATGCTCGATTTTAGTGGCG-TTTTTCA
** * *
16003621 TGTAACGCCGCTAATGCTCGATATTTTGTGGCGTTTTTCG
1 TAAAACGCCGCTAATGCTCGAT-TTTAGTGGCGTTTTTCA
**
16003661 TAAAATACCGCTAATGCTCGATTGTTAGTGGCGTTTTTC
1 TAAAACGCCGCTAATGCTCGATT-TTAGTGGCGTTTTTC
16003700 GCCCAAACGC
Statistics
Matches: 64, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.02
40 55 0.86
41 8 0.12
ACGTcount: A:0.19, C:0.18, G:0.23, T:0.39
Consensus pattern (39 bp):
TAAAACGCCGCTAATGCTCGATTTTAGTGGCGTTTTTCA
Found at i:16010686 original size:13 final size:13
Alignment explanation
Indices: 16010668--16010693 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16010658 AGGAATAATA
16010668 GCAGTTAACAGTT
1 GCAGTTAACAGTT
16010681 GCAGTTAACAGTT
1 GCAGTTAACAGTT
16010694 AAGGAAGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
GCAGTTAACAGTT
Found at i:16014332 original size:21 final size:21
Alignment explanation
Indices: 16014306--16014346 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
16014296 AGACGAGCAA
* *
16014306 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
16014327 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
16014347 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:16020511 original size:13 final size:13
Alignment explanation
Indices: 16020493--16020518 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16020483 AGGAATAATA
16020493 GCAGTTAACAGTT
1 GCAGTTAACAGTT
16020506 GCAGTTAACAGTT
1 GCAGTTAACAGTT
16020519 AAGGAAGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
GCAGTTAACAGTT
Found at i:16024869 original size:48 final size:48
Alignment explanation
Indices: 16024787--16024880 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
16024777 TTTCTTGGCT
* *
16024787 TAAAAACGCCTAAGTCAGCCTAACTTCCACCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
16024835 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
16024881 AGAATTCCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 4 0.10
48 38 0.90
ACGTcount: A:0.40, C:0.28, G:0.13, T:0.19
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:16027385 original size:48 final size:48
Alignment explanation
Indices: 16027303--16027396 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
16027293 TTTCTTGGCT
* *
16027303 TAAAAACGCCTAAGTCAGCCTAACTTCCACCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
16027351 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
16027397 AGAATTCCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 4 0.10
48 38 0.90
ACGTcount: A:0.40, C:0.28, G:0.13, T:0.19
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:16030215 original size:14 final size:14
Alignment explanation
Indices: 16030196--16030243 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
16030186 TAGGAAAGTC
16030196 ATTTTTGCAGTGAA
1 ATTTTTGCAGTGAA
* *
16030210 ATTTTTGTCGGTCAA
1 ATTTTTG-CAGTGAA
*
16030225 TATTTTTGAAGTGAA
1 -ATTTTTGCAGTGAA
16030240 ATTT
1 ATTT
16030244 GGTCATATGA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
14 11 0.41
15 9 0.33
16 7 0.26
ACGTcount: A:0.27, C:0.06, G:0.19, T:0.48
Consensus pattern (14 bp):
ATTTTTGCAGTGAA
Found at i:16031238 original size:75 final size:75
Alignment explanation
Indices: 16031128--16031421 Score: 376
Period size: 75 Copynumber: 3.9 Consensus size: 75
16031118 ACGCCTGCTG
* * * *
16031128 ATTTCTAAGATCTTCTAGGAGCCAGCTGTTGGTAAAAGAGACACCATTGGCTCCATTTTGAGAAG
1 ATTTCTAAGATCTTCTTGAAACCAACTGTTGGTAAAAGAGACACCATTGGCTCCATTTTGAGAAG
*
16031193 CTTGCTGATG
66 CTTGCTGATC
* * * * * *
16031203 ATTTCTAACATCTTCTTGCAACCAATTGTTTGTAAAAGAGGCACCATTGGCTCCTTTTTGAGAAG
1 ATTTCTAAGATCTTCTTGAAACCAACTGTTGGTAAAAGAGACACCATTGGCTCCATTTTGAGAAG
*
16031268 CTTGGTGATC
66 CTTGCTGATC
* *
16031278 ATTT-TGATGATCTTCTTGAAACCAACTGTTGGTAAAAGAGGA-ACCATTGGCTCCATTTCGAGA
1 ATTTCT-AAGATCTTCTTGAAACCAACTGTTGGTAAAAGA-GACACCATTGGCTCCATTTTGAGA
16031341 AGCTTGCTGATC
64 AGCTTGCTGATC
* * * * * *
16031353 ATTTCTATGATCTTCTTGAAACCAATTGTAGGGAAAAGAGGCACCATTAGCTCCATTTTGAGAAG
1 ATTTCTAAGATCTTCTTGAAACCAACTGTTGGTAAAAGAGACACCATTGGCTCCATTTTGAGAAG
16031418 CTTG
66 CTTG
16031422 GTCTTGCTGA
Statistics
Matches: 189, Mismatches: 26, Indels: 8
0.85 0.12 0.04
Matches are distributed among these distances:
74 2 0.01
75 185 0.98
76 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (75 bp):
ATTTCTAAGATCTTCTTGAAACCAACTGTTGGTAAAAGAGACACCATTGGCTCCATTTTGAGAAG
CTTGCTGATC
Found at i:16031325 original size:150 final size:150
Alignment explanation
Indices: 16031153--16031423 Score: 436
Period size: 150 Copynumber: 1.8 Consensus size: 150
16031143 TAGGAGCCAG
* *
16031153 CTGTTGGTAAAAGAGACACCATTGGCTCCATTTTGAGAAGCTTGCTGATGATTTCTAACATCTTC
1 CTGTTGGTAAAAGAGACACCATTGGCTCCATTTCGAGAAGCTTGCTGATCATTTCTAACATCTTC
* ** * * *
16031218 TTGCAACCAATTGTTTGTAAAAGAGGCACCATTGGCTCCTTTTTGAGAAGCTTGGTGATCATTTT
66 TTGAAACCAATTGTAGGGAAAAGAGGCACCATTAGCTCCATTTTGAGAAGCTTGGTGATCATTTT
16031283 GATGATCTTCTTGAAACCAA
131 GATGATCTTCTTGAAACCAA
**
16031303 CTGTTGGTAAAAGAGGA-ACCATTGGCTCCATTTCGAGAAGCTTGCTGATCATTTCTATGATCTT
1 CTGTTGGTAAAAGA-GACACCATTGGCTCCATTTCGAGAAGCTTGCTGATCATTTCTAACATCTT
16031367 CTTGAAACCAATTGTAGGGAAAAGAGGCACCATTAGCTCCATTTTGAGAAGCTTGGT
65 CTTGAAACCAATTGTAGGGAAAAGAGGCACCATTAGCTCCATTTTGAGAAGCTTGGT
16031424 CTTGCTGAAA
Statistics
Matches: 110, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
150 108 0.98
151 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.33
Consensus pattern (150 bp):
CTGTTGGTAAAAGAGACACCATTGGCTCCATTTCGAGAAGCTTGCTGATCATTTCTAACATCTTC
TTGAAACCAATTGTAGGGAAAAGAGGCACCATTAGCTCCATTTTGAGAAGCTTGGTGATCATTTT
GATGATCTTCTTGAAACCAA
Found at i:16035076 original size:25 final size:26
Alignment explanation
Indices: 16035031--16035084 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
16035021 ATACCATAGG
* *
16035031 TAAAAAATTATGTAAAAATATATTAA
1 TAAAAAATCATGTAAAAATATATAAA
*
16035057 TAAAAAATCATGT-AATATATATAAA
1 TAAAAAATCATGTAAAAATATATAAA
16035082 TAA
1 TAA
16035085 GTGGTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (26 bp):
TAAAAAATCATGTAAAAATATATAAA
Found at i:16043759 original size:21 final size:21
Alignment explanation
Indices: 16043733--16043773 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
16043723 ATCTGCTCAA
* *
16043733 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
16043754 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
16043774 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:16051766 original size:19 final size:19
Alignment explanation
Indices: 16051742--16051779 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
16051732 TGCACTTTAC
16051742 AATCAGTAATTCAATGTAT
1 AATCAGTAATTCAATGTAT
16051761 AATCAGTAATTCAATGTAT
1 AATCAGTAATTCAATGTAT
16051780 CTTGACAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (19 bp):
AATCAGTAATTCAATGTAT
Found at i:16053894 original size:29 final size:30
Alignment explanation
Indices: 16053835--16053892 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
16053825 TCCGAGCCTT
*
16053835 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
16053865 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
16053893 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:16054121 original size:13 final size:13
Alignment explanation
Indices: 16054103--16054134 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
16054093 TTTCCAGCAA
16054103 TTATGAATTTATT
1 TTATGAATTTATT
16054116 TTATGAATTTATT
1 TTATGAATTTATT
*
16054129 TGATGA
1 TTATGA
16054135 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:16054342 original size:50 final size:50
Alignment explanation
Indices: 16054229--16054470 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
16054219 ATTTGGGTAA
* * *
16054229 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
16054285 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
16054335 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
16054385 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
16054435 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
16054471 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:16054418 original size:100 final size:103
Alignment explanation
Indices: 16054229--16054478 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
16054219 ATTTGGGTAA
16054229 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
16054294 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
16054335 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
16054397 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
16054435 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
16054479 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:16061495 original size:29 final size:30
Alignment explanation
Indices: 16061436--16061493 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
16061426 TCCGAGCCTT
*
16061436 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
16061466 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
16061494 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:16061723 original size:13 final size:13
Alignment explanation
Indices: 16061705--16061736 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
16061695 TTTCCAGCAA
16061705 TTATGAATTTATT
1 TTATGAATTTATT
16061718 TTATGAATTTATT
1 TTATGAATTTATT
*
16061731 TGATGA
1 TTATGA
16061737 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:16061944 original size:50 final size:50
Alignment explanation
Indices: 16061831--16062072 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
16061821 ATTTGGGTAA
* * *
16061831 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
16061887 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
16061937 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
16061987 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
16062037 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
16062073 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:16062020 original size:100 final size:103
Alignment explanation
Indices: 16061831--16062080 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
16061821 ATTTGGGTAA
16061831 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
16061896 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
16061937 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
16061999 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
16062037 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
16062081 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:16067124 original size:43 final size:43
Alignment explanation
Indices: 16066964--16067116 Score: 220
Period size: 43 Copynumber: 3.6 Consensus size: 43
16066954 ATTTGAGGTC
16066964 TACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATT
1 TACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATT
*
16067007 TATGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATT
1 TACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATT
* * *
16067050 TACGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGA-T
1 TACGTGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATT
* *
16067093 TACATGCAAGACC-TCGTCTGGGAC
1 TACGTGTAAGACCAT-GTCTGGGAC
16067117 GTAGGCATTG
Statistics
Matches: 101, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
42 1 0.01
43 94 0.93
44 6 0.06
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
TACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATT
Found at i:16071567 original size:44 final size:44
Alignment explanation
Indices: 16071504--16071593 Score: 171
Period size: 44 Copynumber: 2.0 Consensus size: 44
16071494 TGTTTTAAAA
*
16071504 TGTTTAATTTGCCAGCAAGTTAAAGCTGAGCATCAAGTACCGTC
1 TGTTTAATTTGCCAGCAAGTTAAAGCCGAGCATCAAGTACCGTC
16071548 TGTTTAATTTGCCAGCAAGTTAAAGCCGAGCATCAAGTACCGTC
1 TGTTTAATTTGCCAGCAAGTTAAAGCCGAGCATCAAGTACCGTC
16071592 TG
1 TG
16071594 GATTACTTCA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (44 bp):
TGTTTAATTTGCCAGCAAGTTAAAGCCGAGCATCAAGTACCGTC
Found at i:16074734 original size:43 final size:43
Alignment explanation
Indices: 16074674--16074826 Score: 213
Period size: 43 Copynumber: 3.6 Consensus size: 43
16074664 ATTTGAGATC
16074674 TACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATT
1 TACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATT
*
16074717 TATGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATT
1 TACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATT
* *
16074760 TACGTGTAAGACTC-TGTCTGGGACAGTGGCATCGATATTTGA-T
1 TACGTGTAAGAC-CATGTCTGGGACATTGGCATCG-TATATGATT
* *
16074803 TACATGCAAGACC-TCGTCTGGGAC
1 TACGTGTAAGACCAT-GTCTGGGAC
16074827 GTAGGCATTG
Statistics
Matches: 101, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
42 2 0.02
43 92 0.91
44 7 0.07
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
TACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATT
Found at i:16080556 original size:23 final size:22
Alignment explanation
Indices: 16080504--16080556 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
16080494 TCCTTGTCTT
*
16080504 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
* *
16080526 CTTATTTTCTCTTCTTTCTTC-AA
1 TTTCTTTTCT-TTCTTT-TTCTAA
16080549 TTTCTTTT
1 TTTCTTTT
16080557 TCACTTTTCT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
22 7 0.29
23 14 0.58
24 3 0.12
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:16080659 original size:71 final size:71
Alignment explanation
Indices: 16080568--16080711 Score: 279
Period size: 71 Copynumber: 2.0 Consensus size: 71
16080558 CACTTTTCTT
*
16080568 TTCTGTTTCACATTCTTTTTCACTCTCAATCTTTTTTTGCTCTTTTTCATTCTCTTTTTCTTTTT
1 TTCTGTTTCACATTCCTTTTCACTCTCAATCTTTTTTTGCTCTTTTTCATTCTCTTTTTCTTTTT
16080633 TCTCAC
66 TCTCAC
16080639 TTCTGTTTCACATTCCTTTTCACTCTCAATCTTTTTTTGCTCTTTTTCATTCTCTTTTTCTTTTT
1 TTCTGTTTCACATTCCTTTTCACTCTCAATCTTTTTTTGCTCTTTTTCATTCTCTTTTTCTTTTT
16080704 TCTCAC
66 TCTCAC
16080710 TT
1 TT
16080712 GTTTTAACAA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 72 1.00
ACGTcount: A:0.10, C:0.26, G:0.03, T:0.62
Consensus pattern (71 bp):
TTCTGTTTCACATTCCTTTTCACTCTCAATCTTTTTTTGCTCTTTTTCATTCTCTTTTTCTTTTT
TCTCAC
Found at i:16085899 original size:46 final size:46
Alignment explanation
Indices: 16085846--16085940 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
16085836 TGTTGGATTT
16085846 TCTTCAGCTACACATTGGTTTGTTGGTTATCAGTTAGTCAGTTTTA
1 TCTTCAGCTACACATTGGTTTGTTGGTTATCAGTTAGTCAGTTTTA
16085892 TCTTCAGCTACACATTGGTTTGTTGGTTATCAGTTAGTCAGTTTTA
1 TCTTCAGCTACACATTGGTTTGTTGGTTATCAGTTAGTCAGTTTTA
16085938 TCT
1 TCT
16085941 CGACATGGCT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.19, C:0.16, G:0.19, T:0.46
Consensus pattern (46 bp):
TCTTCAGCTACACATTGGTTTGTTGGTTATCAGTTAGTCAGTTTTA
Found at i:16091366 original size:8 final size:8
Alignment explanation
Indices: 16091343--16091382 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
16091333 TCACCTCTCA
*
16091343 CTCACTCA
1 CTCACTCT
16091351 CTCACTCT
1 CTCACTCT
16091359 CTCACTCT
1 CTCACTCT
*
16091367 CTCTCTCT
1 CTCACTCT
*
16091375 CTCTCTCT
1 CTCACTCT
16091383 TTTCATTTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.10, C:0.50, G:0.00, T:0.40
Consensus pattern (8 bp):
CTCACTCT
Found at i:16091370 original size:12 final size:12
Alignment explanation
Indices: 16091347--16091382 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
16091337 CTCTCACTCA
*
16091347 CTCACTCACTCT
1 CTCACTCTCTCT
16091359 CTCACTCTCTCT
1 CTCACTCTCTCT
*
16091371 CTCTCTCTCTCT
1 CTCACTCTCTCT
16091383 TTTCATTTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.08, C:0.50, G:0.00, T:0.42
Consensus pattern (12 bp):
CTCACTCTCTCT
Found at i:16098902 original size:25 final size:24
Alignment explanation
Indices: 16098874--16098926 Score: 79
Period size: 25 Copynumber: 2.2 Consensus size: 24
16098864 ACATATCGCA
16098874 GCTCTTTATGAGCATCCCGATATAG
1 GCTCTTTATGAGCATCCCGATAT-G
* *
16098899 GCTCTTTATGAGCTTCCTGATATG
1 GCTCTTTATGAGCATCCCGATATG
16098923 GCTC
1 GCTC
16098927 GCTTGAACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 5 0.19
25 21 0.81
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.36
Consensus pattern (24 bp):
GCTCTTTATGAGCATCCCGATATG
Found at i:16104114 original size:24 final size:24
Alignment explanation
Indices: 16104074--16104133 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
16104064 AATTTTTTAA
*
16104074 AAAAATT-TAAAAGAAAA-ATATAT
1 AAAAATTATAAAAGAAAAGAAAT-T
* *
16104097 AAAAATTATAATATAAAAGAAATT
1 AAAAATTATAAAAGAAAAGAAATT
*
16104121 ATAAATTATAAAA
1 AAAAATTATAAAA
16104134 ATAAATGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
23 7 0.23
24 20 0.67
25 3 0.10
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.28
Consensus pattern (24 bp):
AAAAATTATAAAAGAAAAGAAATT
Found at i:16104121 original size:17 final size:16
Alignment explanation
Indices: 16104090--16104175 Score: 59
Period size: 16 Copynumber: 5.1 Consensus size: 16
16104080 TTAAAAGAAA
*
16104090 AATATATAAAAATTAT
1 AATATAAAAAAATTAT
16104106 AATATAAAAGAAATTAT
1 AATATAAAA-AAATTAT
* *
16104123 AAATTATAAAAATAAATGT
1 -AA-TATAAAAA-AATTAT
* *
16104142 -ATGTAAAAAAATTTAA
1 AATATAAAAAAA-TTAT
16104158 AATATTAAAAAAA-TAT
1 AATA-TAAAAAAATTAT
16104174 AA
1 AA
16104176 AATTCAAGTT
Statistics
Matches: 54, Mismatches: 9, Indels: 14
0.70 0.12 0.18
Matches are distributed among these distances:
15 2 0.04
16 20 0.37
17 10 0.19
18 11 0.20
19 11 0.20
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.31
Consensus pattern (16 bp):
AATATAAAAAAATTAT
Found at i:16111040 original size:19 final size:19
Alignment explanation
Indices: 16111017--16111053 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
16111007 GCTTTTAACA
16111017 AAAAAAAT-AAAATAAAAT
1 AAAAAAATAAAAATAAAAT
16111035 AAAAAAATAAAAATAAAAT
1 AAAAAAATAAAAATAAAAT
16111054 CTTTACGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (19 bp):
AAAAAAATAAAAATAAAAT
Found at i:16111047 original size:14 final size:14
Alignment explanation
Indices: 16111016--16111052 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
16111006 CGCTTTTAAC
16111016 AAAAA-AAATAAAAT
1 AAAAATAAA-AAAAT
16111030 -AAAATAAAAAAAT
1 AAAAATAAAAAAAT
16111043 AAAAATAAAA
1 AAAAATAAAA
16111053 TCTTTACGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAAATAAAAAAAT
Found at i:16115018 original size:34 final size:34
Alignment explanation
Indices: 16114980--16115057 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
16114970 CTATAGTGTT
*
16114980 ATTTGGTGTGATGGATGGATTCATTCATACGAAC
1 ATTTGGTGTGATGGATGGATTCACTCATACGAAC
* * * *
16115014 ATTTGATGTGTTGGATGGATTGACTCATACGAGC
1 ATTTGGTGTGATGGATGGATTCACTCATACGAAC
16115048 ATTTGGTGTG
1 ATTTGGTGTG
16115058 CTAGATAAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.37
Consensus pattern (34 bp):
ATTTGGTGTGATGGATGGATTCACTCATACGAAC
Found at i:16117022 original size:18 final size:17
Alignment explanation
Indices: 16116979--16117023 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
16116969 GTAATTTTAA
16116979 ATTTTATATGCAAAAGT
1 ATTTTATATGCAAAAGT
* *
16116996 ATTTGTATAGTGTAAATGT
1 ATTT-TATA-TGCAAAAGT
16117015 ATTTTATAT
1 ATTTTATAT
16117024 AATATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 5 0.21
18 8 0.33
19 11 0.46
ACGTcount: A:0.36, C:0.02, G:0.13, T:0.49
Consensus pattern (17 bp):
ATTTTATATGCAAAAGT
Found at i:16118070 original size:17 final size:18
Alignment explanation
Indices: 16118029--16118062 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
16118019 TAAAAGGTGT
16118029 AATAATTATACATTTAAA
1 AATAATTATACATTTAAA
16118047 AATAATTATA-ATTTAA
1 AATAATTATACATTTAA
16118063 TAAAAATTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (18 bp):
AATAATTATACATTTAAA
Found at i:16118511 original size:8 final size:8
Alignment explanation
Indices: 16118461--16118558 Score: 64
Period size: 8 Copynumber: 12.8 Consensus size: 8
16118451 TATTAAATTT
16118461 TAATATAA
1 TAATATAA
*
16118469 TAATTTAA
1 TAATATAA
16118477 TAATA-AA
1 TAATATAA
*
16118484 TAATTTAA
1 TAATATAA
**
16118492 TAATATTT
1 TAATATAA
16118500 TAATATAA
1 TAATATAA
*
16118508 TAAT-TAT
1 TAATATAA
16118515 TAAATATAA
1 T-AATATAA
*
16118524 T-TTGATAA
1 TAAT-ATAA
16118532 -AA-ATAA
1 TAATATAA
*
16118538 AAATAT-A
1 TAATATAA
*
16118545 TAATTTAA
1 TAATATAA
16118553 TAATAT
1 TAATAT
16118559 TTTAAATATA
Statistics
Matches: 67, Mismatches: 15, Indels: 16
0.68 0.15 0.16
Matches are distributed among these distances:
6 4 0.06
7 17 0.25
8 43 0.64
9 3 0.04
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (8 bp):
TAATATAA
Found at i:16118531 original size:24 final size:24
Alignment explanation
Indices: 16118468--16118571 Score: 79
Period size: 24 Copynumber: 4.2 Consensus size: 24
16118458 TTTTAATATA
* *
16118468 ATAATTTAATAATAAATAATTTAAT
1 ATAATTTAATAAT-AATTATTAAAT
*
16118493 AATATTTTAATATAATAATTATTAAAT
1 -ATAATTT-A-ATAATAATTATTAAAT
* * **
16118520 ATAATTTGATAA-AAATAAAAATAT
1 ATAATTTAATAATAATTATTAA-AT
16118544 ATAATTTAATAAT-ATT-TTAAAT
1 ATAATTTAATAATAATTATTAAAT
16118566 ATAATT
1 ATAATT
16118572 ATATCTAAAA
Statistics
Matches: 62, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
22 8 0.13
23 8 0.13
24 19 0.31
26 12 0.19
27 10 0.16
28 5 0.08
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (24 bp):
ATAATTTAATAATAATTATTAAAT
Found at i:16119326 original size:29 final size:29
Alignment explanation
Indices: 16119281--16119340 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
16119271 ATATATTTTA
16119281 ATTATATTTAATAATTCAAGTAA-TAAAT
1 ATTATATTTAATAATTCAAGTAATTAAAT
**
16119309 ATTAT-TTTAAGTCAATTCCTGTAATTAAAT
1 ATTATATTTAA-T-AATTCAAGTAATTAAAT
16119339 AT
1 AT
16119341 ATAATACTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 5 0.19
28 6 0.22
29 9 0.33
30 7 0.26
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (29 bp):
ATTATATTTAATAATTCAAGTAATTAAAT
Found at i:16121414 original size:16 final size:16
Alignment explanation
Indices: 16121393--16121426 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
16121383 AATTTTCATT
16121393 ATTTTCTACCTCTTTC
1 ATTTTCTACCTCTTTC
*
16121409 ATTTTCTACCTTTTTC
1 ATTTTCTACCTCTTTC
16121425 AT
1 AT
16121427 CAGTTCATCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.15, C:0.26, G:0.00, T:0.59
Consensus pattern (16 bp):
ATTTTCTACCTCTTTC
Found at i:16130261 original size:14 final size:15
Alignment explanation
Indices: 16130237--16130271 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
16130227 TATATATATT
16130237 ACCATATAAATACTA
1 ACCATATAAATACTA
16130252 ACCATA-AAATACTA
1 ACCATATAAATACTA
16130266 ATCCAT
1 A-CCAT
16130272 GATTAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
ACCATATAAATACTA
Found at i:16130970 original size:41 final size:41
Alignment explanation
Indices: 16130939--16131386 Score: 567
Period size: 41 Copynumber: 10.9 Consensus size: 41
16130929 CTATATAAAA
* * ** * *
16130939 CACCGGCATAAAGCCTGCTAGGCACAAAGCC-CGATTCATTT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAAT-AATT
* * ** *
16130980 CACCGGCA-CAAAGCCTGCTAGACATAAAGTCGGAATTAATT
1 CACCGGCATC-AAGCCTGCTAGGCATAAAGCCTAAAATAATT
* *
16131021 CACCGGCATCAAGCCTGCTAGACATAAAGTCTAAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
* * *
16131062 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
* *
16131103 CACCGGCATCAAGCCTGCTAGACATAAAGTCTAAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
* * *
16131144 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
* *
16131185 CACCGGCATCAAGCCTGCTAGACATAAAGTCTAAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
* * *
16131226 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
* *
16131267 CACCGGCATCAAGCCTGCTAGACATAAAGTCTAAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
* * *
16131308 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
*
16131349 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAAAT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCT-AAAAT
16131387 CTCATATACA
Statistics
Matches: 357, Mismatches: 46, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
41 349 0.98
42 8 0.02
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (41 bp):
CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
Found at i:16131064 original size:82 final size:82
Alignment explanation
Indices: 16130978--16131369 Score: 714
Period size: 82 Copynumber: 4.8 Consensus size: 82
16130968 CCCGATTCAT
* * * * * *
16130978 TTCACCGGCA-CAAAGCCTGCTAGACATAAAGTCGGAATTAATTCACCGGCATCAAGCCTGCTAG
1 TTCACCGGCATC-AAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAG
16131042 ACATAAAGTCTAAAATAA
65 ACATAAAGTCTAAAATAA
16131060 TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAGA
1 TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAGA
16131125 CATAAAGTCTAAAATAA
66 CATAAAGTCTAAAATAA
16131142 TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAGA
1 TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAGA
16131207 CATAAAGTCTAAAATAA
66 CATAAAGTCTAAAATAA
16131224 TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAGA
1 TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAGA
16131289 CATAAAGTCTAAAATAA
66 CATAAAGTCTAAAATAA
16131306 TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAG
1 TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAG
16131370 GCATTAAGCC
Statistics
Matches: 303, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
82 302 1.00
83 1 0.00
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.21
Consensus pattern (82 bp):
TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAGA
CATAAAGTCTAAAATAA
Found at i:16131608 original size:64 final size:65
Alignment explanation
Indices: 16131499--16131679 Score: 243
Period size: 64 Copynumber: 2.9 Consensus size: 65
16131489 GCAAACAAAC
*
16131499 ATTCGAACCACATATG--TAT-AATTTACA-ACATTAAAATTCAGCTCAAAGAA-TTTGTAACCT
1 ATTCGAACCACATATGTATATAAAATT-CATACATT-AAATTCAGCTCAAAGAACTTTGTAACCT
16131559 AT
64 AT
*
16131561 ATTCGAACCACATCTGTA-AGTAAAATTCATACATTAAATTCAGCTC-AAGAACTTTGTAACCTA
1 ATTCGAACCACATATGTATA-TAAAATTCATACATTAAATTCAGCTCAAAGAACTTTGTAACCTA
16131624 T
65 T
* *
16131625 ATTTGAACCACATATGTATATAAAATTCATACATTAAATACAGCTC-AAGAACTTT
1 ATTCGAACCACATATGTATATAAAATTCATACATTAAATTCAGCTCAAAGAACTTT
16131680 AAATATATAT
Statistics
Matches: 107, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
62 15 0.14
63 6 0.06
64 76 0.71
65 10 0.09
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.32
Consensus pattern (65 bp):
ATTCGAACCACATATGTATATAAAATTCATACATTAAATTCAGCTCAAAGAACTTTGTAACCTAT
Found at i:16137393 original size:14 final size:15
Alignment explanation
Indices: 16137369--16137403 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
16137359 TATATATATT
16137369 ACCATATAAATACTA
1 ACCATATAAATACTA
16137384 ACCATA-AAATACTA
1 ACCATATAAATACTA
16137398 ATCCAT
1 A-CCAT
16137404 GATTAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
ACCATATAAATACTA
Found at i:16138102 original size:41 final size:41
Alignment explanation
Indices: 16138071--16138518 Score: 567
Period size: 41 Copynumber: 10.9 Consensus size: 41
16138061 CTATATAAAA
* * ** * *
16138071 CACCGGCATAAAGCCTGCTAGGCACAAAGCC-CGATTCATTT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAAT-AATT
* * ** *
16138112 CACCGGCA-CAAAGCCTGCTAGACATAAAGTCGGAATTAATT
1 CACCGGCATC-AAGCCTGCTAGGCATAAAGCCTAAAATAATT
* *
16138153 CACCGGCATCAAGCCTGCTAGACATAAAGTCTAAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
* * *
16138194 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
* *
16138235 CACCGGCATCAAGCCTGCTAGACATAAAGTCTAAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
* * *
16138276 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
* *
16138317 CACCGGCATCAAGCCTGCTAGACATAAAGTCTAAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
* * *
16138358 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
* *
16138399 CACCGGCATCAAGCCTGCTAGACATAAAGTCTAAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
* * *
16138440 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
*
16138481 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAAAT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCT-AAAAT
16138519 CTCATATACA
Statistics
Matches: 357, Mismatches: 46, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
41 349 0.98
42 8 0.02
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (41 bp):
CACCGGCATCAAGCCTGCTAGGCATAAAGCCTAAAATAATT
Found at i:16138196 original size:82 final size:82
Alignment explanation
Indices: 16138110--16138501 Score: 714
Period size: 82 Copynumber: 4.8 Consensus size: 82
16138100 CCCGATTCAT
* * * * * *
16138110 TTCACCGGCA-CAAAGCCTGCTAGACATAAAGTCGGAATTAATTCACCGGCATCAAGCCTGCTAG
1 TTCACCGGCATC-AAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAG
16138174 ACATAAAGTCTAAAATAA
65 ACATAAAGTCTAAAATAA
16138192 TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAGA
1 TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAGA
16138257 CATAAAGTCTAAAATAA
66 CATAAAGTCTAAAATAA
16138274 TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAGA
1 TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAGA
16138339 CATAAAGTCTAAAATAA
66 CATAAAGTCTAAAATAA
16138356 TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAGA
1 TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAGA
16138421 CATAAAGTCTAAAATAA
66 CATAAAGTCTAAAATAA
16138438 TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAG
1 TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAG
16138502 GCATTAAGCC
Statistics
Matches: 303, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
82 302 1.00
83 1 0.00
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.21
Consensus pattern (82 bp):
TTCACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTGCTAGA
CATAAAGTCTAAAATAA
Found at i:16138749 original size:64 final size:63
Alignment explanation
Indices: 16138631--16138811 Score: 262
Period size: 64 Copynumber: 2.9 Consensus size: 63
16138621 GCAAACAAAC
*
16138631 ATTCGAACCACATATGT-AT-AATTTACA-ACATTAAAATTCAGCTCAAAGAA-TTTGTAACCTA
1 ATTCGAACCACATATGTAATAAAATT-CATACATT-AAATTCAGCTC-AAGAACTTTGTAACCTA
16138692 T
63 T
16138693 ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
1 ATTCGAACCACATATGTAA-TAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
* *
16138757 ATTTGAACCACATATGTATATAAAATTCATACATTAAATACAGCTCAAGAACTTT
1 ATTCGAACCACATATGTA-ATAAAATTCATACATTAAATTCAGCTCAAGAACTTT
16138812 AAATATATAT
Statistics
Matches: 110, Mismatches: 3, Indels: 10
0.89 0.02 0.08
Matches are distributed among these distances:
62 17 0.15
63 6 0.05
64 77 0.70
65 10 0.09
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (63 bp):
ATTCGAACCACATATGTAATAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
Found at i:16148124 original size:18 final size:17
Alignment explanation
Indices: 16148078--16148120 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
16148068 TAATATCAAT
16148078 TAATAAAATATTATTAC
1 TAATAAAATATTATTAC
* *
16148095 TTATTAAAATATTATTAG
1 -TAATAAAATATTATTAC
16148113 TAATAAAA
1 TAATAAAA
16148121 ATATCATTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (17 bp):
TAATAAAATATTATTAC
Found at i:16153635 original size:10 final size:11
Alignment explanation
Indices: 16153603--16153629 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
16153593 AATTTGAAAT
16153603 TGAAAAAGGAG
1 TGAAAAAGGAG
16153614 TGAAAAAGGAG
1 TGAAAAAGGAG
16153625 TGAAA
1 TGAAA
16153630 TAGAGTAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.33, T:0.11
Consensus pattern (11 bp):
TGAAAAAGGAG
Found at i:16155251 original size:26 final size:26
Alignment explanation
Indices: 16155215--16155268 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
16155205 CTTGAGGGAT
* *
16155215 TTCTTGGAACACTTTTATGAAGTCAC
1 TTCTTAGAACACTTTTATAAAGTCAC
16155241 TTCTTAGAACACTTTTATAAAGTCAC
1 TTCTTAGAACACTTTTATAAAGTCAC
16155267 TT
1 TT
16155269 TGTGTATATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.41
Consensus pattern (26 bp):
TTCTTAGAACACTTTTATAAAGTCAC
Found at i:16155269 original size:14 final size:14
Alignment explanation
Indices: 16155224--16155269 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
16155214 TTTCTTGGAA
16155224 CACTTTTATGAAGT
1 CACTTTTATGAAGT
16155238 CACTTCTTA-GAA--
1 CACTT-TTATGAAGT
*
16155250 CACTTTTATAAAGT
1 CACTTTTATGAAGT
16155264 CACTTT
1 CACTTT
16155270 GTGTATATCT
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
11 3 0.11
12 7 0.26
14 14 0.52
15 3 0.11
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (14 bp):
CACTTTTATGAAGT
Found at i:16156196 original size:114 final size:112
Alignment explanation
Indices: 16156026--16156567 Score: 442
Period size: 114 Copynumber: 4.8 Consensus size: 112
16156016 GCATTTTTGA
* * * * *
16156026 GAAAGCGCCGCAAAAAACCT-AGCGCAACGACGCCGTTTCCCCAGC-ATCCGGTGATTTAGCGGC
1 GAAAGCGCCGCAAAAAAACTAAGCGCAACGACGTCGTTTCCCGAGCTTTCAGG-GATTTAGCGGC
* *
16156089 GTTTTTCAGTAAGCGCCGCTAATTCTCAAGGCTTTAGCGGCGATTCTAT
65 GTTTTTCAGTAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTCT-T
* *
16156138 GAAAGCGCCGCAAAAATAACTAAGCCCAACGATGTCGTTTCCCGAGCTTTCAGGGATTTAGCGGC
1 GAAAGCGCCGCAAAAA-AACTAAGCGCAACGACGTCGTTTCCCGAGCTTTCAGGGATTTAGCGGC
* * * * *
16156203 G-CTTTCTA-TAAAGCGCCGCTAATGGT-TAGGTCTTTAGCAGCGTTTCTG
65 GTTTTTC-AGT-AAGCGCCGCTAATGCTCAAGG-CTTTAGCGGCGTTTCTT
* ** * *
16156251 GAAAAGCGCTGCTACTTAAAACT-AGCGCAAGGACGTCGTCTCCCGAGCTTTCAGGGATTTAGCG
1 G-AAAGCGCCGC-A-AAAAAACTAAGCGCAACGACGTCGTTTCCCGAGCTTTCAGGGATTTAGCG
* * * * * *
16156315 GCGCTTTTACAGAAAGTGCCGCTAATGCTGAAGTCTTTAGCGGTGTTT-TT
63 GCG-TTTTTCAGTAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTCTT
* * * * * *
16156365 GTTAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTG-GCTTTCGGGGATTTTAGCG
1 G--AAAGCGCCGCAAAAAAACTAAGCGCAACGACGTCGTTTCCCGAGCTTTCAGGGA-TTTAGCG
* * * *
16156429 GCGTTTTT--GTAAAGCGTCGCTAATGTTC-AGTCTTTAGCGGCGTTTTTT
63 GCGTTTTTCAGT-AAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTCTT
* * * * * * * *
16156477 GGAAAGTGCCACAAAAAAAACTAAGCGCAACGTCGTCGTTTTCTGTGCTTTTGAAGGATTTAGCG
1 -GAAAGCGCCGC-AAAAAAACTAAGCGCAACGACGTCGTTTCCCGAGC-TTTCAGGGATTTAGCG
*
16156542 GCGTTTTT-AGAAAAGCGCCGCTAATG
63 GCGTTTTTCAG-TAAGCGCCGCTAATG
16156568 ATTAGGGATT
Statistics
Matches: 345, Mismatches: 61, Indels: 46
0.76 0.13 0.10
Matches are distributed among these distances:
111 25 0.07
112 59 0.17
113 49 0.14
114 160 0.46
115 45 0.13
116 7 0.02
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.27
Consensus pattern (112 bp):
GAAAGCGCCGCAAAAAAACTAAGCGCAACGACGTCGTTTCCCGAGCTTTCAGGGATTTAGCGGCG
TTTTTCAGTAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTCTT
Found at i:16156544 original size:227 final size:228
Alignment explanation
Indices: 16156037--16156567 Score: 531
Period size: 228 Copynumber: 2.3 Consensus size: 228
16156027 AAAGCGCCGC
* * * * * ** * *
16156037 AAAAAACCTAGCGCAACGACGCCGTTTCCCCAGC-ATCCGGTGATTTAGCGGCGTTTTTCAGTAA
1 AAAAAAACTAGCGCAACGACGTCGTCTCCCGAGCTTTCAAG-GATTTAGCGGCGTTTTACAGAAA
*
16156101 GCGCCGCTAATTCTCAAGGCTTTAGCGGCGATTCTATGAAAGCGCCGCAAAAATAACTAAGCCCA
65 GCGCCGCTAATGCTCAAGGCTTTAGCGGCGATTCTATGAAAGCGCCGCAAAAATAACTAAGCCCA
* *
16156166 ACGATGTCGTTTCCCGAGCTTTCAGGGATTTAGCGGCGCTTTCTATAAAGCGCCGCTAATGGTTA
130 ACGACGCCGTTTCCCGAGCTTTCAGGGATTTAGCGGCGCTTTCTATAAAGCGCCGCTAATGGTTA
**
16156231 GGTCTTTAGCAGCGTTTCTGGAAAAGCGCTGCTA
195 GGTCTTTAGCAGCGTTTCTGGAAAAGCGCCACTA
*** * *
16156265 CTTAAAACTAGCGCAAGGACGTCGTCTCCCGAGCTTTCAGGGATTTAGCGGCGCTTTTACAGAAA
1 AAAAAAACTAGCGCAACGACGTCGTCTCCCGAGCTTTCAAGGATTTAGCGGCG-TTTTACAGAAA
* * * * * * * * *
16156330 GTGCCGCTAATGCTGAAGTCTTTAGCGGTGTTTTTGTTAAAGCGCCGCAAAAA-ACCTAAGCCCA
65 GCGCCGCTAATGCTCAAGGCTTTAGCGGCGATTCTATGAAAGCGCCGCAAAAATAACTAAGCCCA
* * * * * *
16156394 ACGACGCCGTTTTCTG-GCTTTCGGGGATTTTAGCGGCG-TTTTTGTAAAGCGTCGCTAAT-GTT
130 ACGACGCCGTTTCCCGAGCTTTCAGGGA-TTTAGCGGCGCTTTCTATAAAGCGCCGCTAATGGTT
* * *
16156456 CA-GTCTTTAGCGGCGTTTTTTGG-AAAGTGCCAC-A
194 -AGGTCTTTAGCAGCG-TTTCTGGAAAAGCGCCACTA
* * * * * * *
16156490 AAAAAAACTAAGCGCAACGTCGTCGTTTTCTGTGCTTTTGAAGGATTTAGCGGCGTTTT-TAGAA
1 AAAAAAACT-AGCGCAACGACGTCGTCTCCCGAGC-TTTCAAGGATTTAGCGGCGTTTTACAG-A
16156554 AAGCGCCGCTAATG
63 AAGCGCCGCTAATG
16156568 ATTAGGGATT
Statistics
Matches: 247, Mismatches: 48, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
225 9 0.04
226 59 0.24
227 52 0.21
228 70 0.28
229 57 0.23
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (228 bp):
AAAAAAACTAGCGCAACGACGTCGTCTCCCGAGCTTTCAAGGATTTAGCGGCGTTTTACAGAAAG
CGCCGCTAATGCTCAAGGCTTTAGCGGCGATTCTATGAAAGCGCCGCAAAAATAACTAAGCCCAA
CGACGCCGTTTCCCGAGCTTTCAGGGATTTAGCGGCGCTTTCTATAAAGCGCCGCTAATGGTTAG
GTCTTTAGCAGCGTTTCTGGAAAAGCGCCACTA
Done.